|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
1-438 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 734.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 1 MLDNLTNRLSRVVKTMRGQARLTEANTQEMLREVRMALLEADVALPVVREFIQEVKEKAMGQEVVGSLNPGQALVGVVSD 80
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 81 ELTRIMGGDlplaETELSLAAQPPAVILMAGLQGAGKTTTTAKLARLLREgeltqngkkiDKKKVLVVSADVYRPAAIEQ 160
Cdd:COG0541 81 ELVELLGGE----NEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKK----------KGKKPLLVAADVYRPAAIEQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 161 LKTVAAQVGVDFFPSDGSQKPLDIAHSALEHAKRHFYDVLIVDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDAMQGQ 240
Cdd:COG0541 147 LKTLGEQIGVPVFPEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQ 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 241 DAVNVAKAFSDVLPLTGVVMTKLDGDSRGGAALSVRHVTGKPLKFVGTSEKLDGLEIFYPERMAQRVLGMGDILSLVEQT 320
Cdd:COG0541 227 DAVNVAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKA 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 321 KRNIDIAEAEKMAAKLKKGdKFDLNDFLDQLQQVKKMGDMGSIMEKLPAqFSAMAGQLQGGEAEKQLRRTEGIINSMTIE 400
Cdd:COG0541 307 QEAIDEEEAEKLAKKLKKG-KFDLEDFLEQLQQMKKMGPLKKLLGMLPG-MGKLKQLKDLDIDEKELKRIEAIINSMTPE 384
|
410 420 430
....*....|....*....|....*....|....*...
gi 738652318 401 ERSKPEILKASRKQRIAKGAGVQVQEVNRLLKQFEQMQ 438
Cdd:COG0541 385 ERRNPDIINGSRKRRIAKGSGTTVQDVNRLLKQFEQMK 422
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
2-443 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 585.02 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 2 LDNLTNRLSRVVKTMRGQARLTEANTQEMLREVRMALLEADVALPVVREFIQEVKEKAMGQEVVGSLNPGQALVGVVSDE 81
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 82 LTRIMGGDlplaETELSLAAQPPAVILMAGLQGAGKTTTTAKLARLLregeltqngKKIDKKKVLVVSADVYRPAAIEQL 161
Cdd:TIGR00959 81 LVAILGGE----NAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYL---------KKKQGKKVLLVACDLYRPAAIEQL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 162 KTVAAQVGVDFFPSDGSQKPLDIAHSALEHAKRHFYDVLIVDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDAMQGQD 241
Cdd:TIGR00959 148 KVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQD 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 242 AVNVAKAFSDVLPLTGVVMTKLDGDSRGGAALSVRHVTGKPLKFVGTSEKLDGLEIFYPERMAQRVLGMGDILSLVEQTK 321
Cdd:TIGR00959 228 AVNTAKTFNERLGLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQ 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 322 RNIDIAEAEKMAAKLKKGdKFDLNDFLDQLQQVKKMGDMGSIMEKLPAQFSAMAGQLQGGEAEKQLRRTEGIINSMTIEE 401
Cdd:TIGR00959 308 EVVDEEEAKKLAEKMKKG-QFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDADLDEKQFKRIEAIISSMTPEE 386
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 738652318 402 RSKPEILKASRKQRIAKGAGVQVQEVNRLLKQFEQMQAMMKQ 443
Cdd:TIGR00959 387 RRNPKILNPSRRKRIAAGSGTTVQDVNKLIKRFEQMKKMMKK 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
5-454 |
6.59e-160 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 460.83 E-value: 6.59e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 5 LTNRLSRVVKTMRGQARLTEANTQEMLREVRMALLEADVALPVVREFIQEVKEKAMGQEVVGSLNPGQALVGVVSDELTR 84
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 85 IMGGDLPLAETELSlaaqpPAVILMAGLQGAGKTTTTAKLARLLRegeltqngKKidKKKVLVVSADVYRPAAIEQLKTV 164
Cdd:PRK00771 81 LLGEETEPLVLPLK-----PQTIMLVGLQGSGKTTTAAKLARYFK--------KK--GLKVGLVAADTYRPAAYDQLKQL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 165 AAQVGVDFFPSDGSQKPLDIAHSALEHAKRhfYDVLIVDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDAMQGQDAVN 244
Cdd:PRK00771 146 AEKIGVPFYGDPDNKDAVEIAKEGLEKFKK--ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKN 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 245 VAKAFSDVLPLTGVVMTKLDGDSRGGAALSVRHVTGKPLKFVGTSEKLDGLEIFYPERMAQRVLGMGDILSLVEQTKRNI 324
Cdd:PRK00771 224 QAKAFHEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEAL 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 325 DIAEAEKMAAKLKKGdKFDLNDFLDQLQQVKKMGDMGSIMEKLPaqfsAMAGQLQGGE---AEKQLRRTEGIINSMTIEE 401
Cdd:PRK00771 304 DEEEEEKDVEKMMKG-KFTLKDMYKQLEAMNKMGPLKQILQMLP----GLGGKLPDEAlevTEEKLKKYKAIMDSMTEEE 378
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 738652318 402 RSKPEILKASRKQRIAKGAGVQVQEVNRLLKQFEQMQAMMKQFKKGG--MQKMMR 454
Cdd:PRK00771 379 LENPEIINASRIRRIARGSGTTVEDVRELLKYYKMMKKAMKQLKKGKgkMGKLMK 433
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
105-307 |
9.52e-108 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 318.39 E-value: 9.52e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 105 AVILMAGLQGAGKTTTTAKLARLLREgeltqngkkiDKKKVLVVSADVYRPAAIEQLKTVAAQVGVDFFPSDGSQKPLDI 184
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKK----------KGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 185 AHSALEHAKRHFYDVLIVDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDAMQGQDAVNVAKAFSDVLPLTGVVMTKLD 264
Cdd:cd18539 71 AKRALEKAKEEGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLD 150
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 738652318 265 GDSRGGAALSVRHVTGKPLKFVGTSEKLDGLEIFYPERMAQRV 307
Cdd:cd18539 151 GDARGGAALSIRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
104-309 |
1.67e-101 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 302.79 E-value: 1.67e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 104 PAVILMAGLQGAGKTTTTAKLARLLregeltqngKKIDKKKVLVVSADVYRPAAIEQLKTVAAQVGVDFFPSDGSQKPLD 183
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARL---------KLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 184 IAHSALEHAKRHFYDVLIVDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDAMQGQDAVNVAKAFSDVLPLTGVVMTKL 263
Cdd:smart00962 72 VAKDAVELAKARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKL 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 738652318 264 DGDSRGGAALSVRHVTGKPLKFVGTSEKLDGLEIFYPERMAQRVLG 309
Cdd:smart00962 152 DGTAKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
106-306 |
7.08e-90 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 272.88 E-value: 7.08e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 106 VILMAGLQGAGKTTTTAKLARLLREgeltqngkkiDKKKVLVVSADVYRPAAIEQLKTVAAQVGVDFFPSDGSQKPLDIA 185
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKK----------KGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 186 HSALEHAKRHFYDVLIVDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDAMQGQDAVNVAKAFSDVLPLTGVVMTKLDG 265
Cdd:pfam00448 72 FDAVEKAKAENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDG 151
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 738652318 266 DSRGGAALSVRHVTGKPLKFVGTSEKLDGLEIFYPERMAQR 306
Cdd:pfam00448 152 DAKGGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSR 192
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
105-307 |
4.72e-78 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 242.28 E-value: 4.72e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 105 AVILMAGLQGAGKTTTTAKLARLLREgeltqngkkiDKKKVLVVSADVYRPAAIEQLKTVAAQVGVDFFPSDGSQKPLDI 184
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQE----------KGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 185 AHSALEHAKRHFYDVLIVDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDAMQGQDAVNVAKAFSDVLPLTGVVMTKLD 264
Cdd:cd03115 71 AQEAVEKAKLEGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLD 150
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 738652318 265 GDSRGGAALSVRHVTGKPLKFVGTSEKLDGLEIFYPERMAQRV 307
Cdd:cd03115 151 GTAKGGAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
3-309 |
1.73e-76 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 242.24 E-value: 1.73e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 3 DNLTNRLSRVVKtmrGQARLTEantqEMLREVRMALLEADVALPVVREFIQEVKEKAMGQEVvgslNPGQALVGVVSDEL 82
Cdd:COG0552 14 SGLGEKLKSLFS---GKKKIDE----DLLEELEELLIEADVGVETTEEIIEELRERVKRKKL----KDPEELKEALKEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 83 TRIMGGDlplaETELSLAAQPPAVILMAGLQGAGKTTTTAKLARLLREgeltqngkkiDKKKVLVVSADVYRPAAIEQLK 162
Cdd:COG0552 83 LEILDPV----DKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKA----------EGKSVLLAAGDTFRAAAIEQLE 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 163 TVAAQVGVDFFPSDGSQKPLDIAHSALEHAKRHFYDVLIVDTAGRLGIDQDMMDEISALHRFLK------PVETLFVVDA 236
Cdd:COG0552 149 VWGERVGVPVIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKkldpdaPHEVLLVLDA 228
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 738652318 237 MQGQDAVNVAKAFSDVLPLTGVVMTKLDGDSRGGAALSVRHVTGKPLKFVGTSEKLDGLEIFYPERMAQRVLG 309
Cdd:COG0552 229 TTGQNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
1-440 |
2.46e-74 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 240.89 E-value: 2.46e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 1 MLDNLTNRLSRVVKTMRGQARLTEANTQEMLREVRMALLEADVALPVVREFIQEVKEKAMGQEVVGSLNPGQALVGVVSD 80
Cdd:TIGR01425 1 VLAQLGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 81 ELTRIMGGDLPlaetELSLAAQPPAVILMAGLQGAGKTTTTAKLARLLREGELtqngkkidkkKVLVVSADVYRPAAIEQ 160
Cdd:TIGR01425 81 ELCNLVDPGVE----AFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGF----------KPALVCADTFRAGAFDQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 161 LKTVAAQVGVDFFPSDGSQKPLDIAHSALEHAKRHFYDVLIVDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDAMQGQ 240
Cdd:TIGR01425 147 LKQNATKAGIPFYGSYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQ 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 241 DAVNVAKAFSDVLPLTGVVMTKLDGDSRGGAALSVRHVTGKPLKFVGTSEKLDGLEIFYPERMAQRVLGMGDILSLVEQT 320
Cdd:TIGR01425 227 AAFGQAKAFKDSVEVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKV 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 321 KRNIDIAEAEKMAAKLKKGdKFDLNDFLDQLQQVKKMGDMGSIMEKLPAQFSAMAGQLQGGEAEKQLRRTEGIINSMTIE 400
Cdd:TIGR01425 307 QDLALNDEEKTLIEHLKEG-TFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSHPMMSKGNEEETSAKIKVFMTIMDSMTDR 385
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 738652318 401 E---RSKPEILKASRKQRIAKGAGVQVQEVNRLLKQFEQMQAM 440
Cdd:TIGR01425 386 EldsTAKTMLKDPSRIRRVARGSGRDIREVNELLEQYKLFAQM 428
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
21-309 |
1.83e-67 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 220.23 E-value: 1.83e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 21 RLTEANTQEMLREVRMALLEADVALPVVREFIQEVKEKAMGQEVVGSLNPGQALVGVVSDELTRIMGGDLPLAETELSLA 100
Cdd:PRK14974 57 EIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDLFDLIEEIKS 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 101 AQPPAVILMAGLQGAGKTTTTAKLARLLREgeltqNGKKidkkkVLVVSADVYRPAAIEQLKTVAAQVGVDFFPSDGSQK 180
Cdd:PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKK-----NGFS-----VVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGAD 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 181 PLDIAHSALEHAKRHFYDVLIVDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDAMQGQDAVNVAKAFSDVLPLTGVVM 260
Cdd:PRK14974 207 PAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVIL 286
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 738652318 261 TKLDGDSRGGAALSVRHVTGKPLKFVGTSEKLDGLEIFYPERMAQRVLG 309
Cdd:PRK14974 287 TKVDADAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
29-308 |
1.04e-65 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 213.66 E-value: 1.04e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 29 EMLREVRMALLEADVALPVVREFIQEVKEKAMGQEVvgslNPGQALVGVVSDEL-TRIMGGDLPLAETELSLAAQPPAVI 107
Cdd:TIGR00064 5 DFFEELEEILLESDVGYEVVEKIIEALKKELKGKKV----KDAEKLKEILKEYLkEILKEDLLKNTDLELIVEENKPNVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 108 LMAGLQGAGKTTTTAKLARLLregelTQNGKKidkkkVLVVSADVYRPAAIEQLKTVAAQVGVDFFPSDGSQKPLDIAHS 187
Cdd:TIGR00064 81 LFVGVNGVGKTTTIAKLANKL-----KKQGKS-----VLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFD 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 188 ALEHAKRHFYDVLIVDTAGRLGIDQDMMDEISALHRFLK------PVETLFVVDAMQGQDAVNVAKAFSDVLPLTGVVMT 261
Cdd:TIGR00064 151 AIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKkvdkdaPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILT 230
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 738652318 262 KLDGDSRGGAALSVRHVTGKPLKFVGTSEKLDGLEIFYPERMAQRVL 308
Cdd:TIGR00064 231 KLDGTAKGGIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
3-309 |
3.89e-63 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 208.03 E-value: 3.89e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 3 DNLTNRLSRVVktmrGQARLTEantqEMLREVRMALLEADVALPVVREFIQEVKEKAMGQEVVGSlnpgQALVGVVSDEL 82
Cdd:PRK10416 29 ENFGEGINGLF----AKKKIDE----DLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDP----EELKELLKEEL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 83 TRIMGGDlplaETELSLAAQPPAVILMAGLQGAGKTTTTAKLARLLR-EGeltqngkkidkKKVLVVSADVYRPAAIEQL 161
Cdd:PRK10416 97 AEILEPV----EKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKaQG-----------KKVLLAAGDTFRAAAIEQL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 162 KTVAAQVGVDFF-PSDGSQkPLDIAHSALEHAKRHFYDVLIVDTAGRLGIDQDMMDEISALHRFLK------PVETLFVV 234
Cdd:PRK10416 162 QVWGERVGVPVIaQKEGAD-PASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKkadpdaPHEVLLVL 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 738652318 235 DAMQGQDAVNVAKAFSDVLPLTGVVMTKLDGDSRGGAALSVRHVTGKPLKFVGTSEKLDGLEIFYPERMAQRVLG 309
Cdd:PRK10416 241 DATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
105-307 |
1.99e-61 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 199.72 E-value: 1.99e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 105 AVILMAGLQGAGKTTTTAKLARLLREgeltqngkkiDKKKVLVVSADVYRPAAIEQLKTVAAQVGVDFFPSDGSQKPLDI 184
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKN----------QGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAV 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 185 AHSALEHAKRHFYDVLIVDTAGRLGIDQDMMDEISALHRFLK------PVETLFVVDAMQGQDAVNVAKAFSDVLPLTGV 258
Cdd:cd17874 71 AFDAIQAAKARGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKkkdpeaPHEVLLVLDATTGQNALEQAKEFNEAVGLTGI 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 738652318 259 VMTKLDGDSRGGAALSVRHVTGKPLKFVGTSEKLDGLEIFYPERMAQRV 307
Cdd:cd17874 151 ILTKLDGTAKGGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
106-307 |
8.25e-59 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 192.41 E-value: 8.25e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 106 VILMAGLQGAGKTTTTAKLARLLRegeltqngkkidKK--KVLVVSADVYRPAAIEQLKTVAAQVGVDFFPSDGSQKPLD 183
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQ------------KKgyKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVK 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 184 IAHSALEHAKRHFYDVLIVDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDAMQGQDAVNVAKAFSDVLPLTGVVMTKL 263
Cdd:cd17875 70 IAKEGVEKFKKEKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKL 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 738652318 264 DGDSRGGAALSVRHVTGKPLKFVGTSEKLDGLEIFYPERMAQRV 307
Cdd:cd17875 150 DGHAKGGGALSAVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
341-438 |
1.61e-43 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 148.70 E-value: 1.61e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 341 KFDLNDFLDQLQQVKKMGDMGSIMEKLPAqfsaMAGQLQGGEAEKQLRRTEGIINSMTIEERSKPEILKASRKQRIAKGA 420
Cdd:pfam02978 1 KFTLRDFLEQLQQIKKMGPLSKILSMIPG----MGKKDDDIDSEKKLKRIEAIIDSMTPKERDNPDIINASRKRRIARGS 76
|
90
....*....|....*...
gi 738652318 421 GVQVQEVNRLLKQFEQMQ 438
Cdd:pfam02978 77 GTSVQEVNRLLKQFKQMK 94
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
2-309 |
1.54e-37 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 141.16 E-value: 1.54e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 2 LDNLTNRLSRVVKTMRGQARLTEANTQEMLREvrmaLLEADVALPVVREFIQEVKEKAmgqevvgslnPGQALVGVVSDE 81
Cdd:COG1419 83 LAELKELLEEQLSGLAGESARLPPELAELLER----LLEAGVSPELARELLEKLPEDL----------SAEEAWRALLEA 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 82 LTRImggdLPLAETELSlaaQPPAVILMAGLQGAGKTTTTAKLA-RLLREGeltqngkkidKKKVLVVSADVYRPAAIEQ 160
Cdd:COG1419 149 LARR----LPVAEDPLL---DEGGVIALVGPTGVGKTTTIAKLAaRFVLRG----------KKKVALITTDTYRIGAVEQ 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 161 LKTVAAQVGVdffpsdgsqkPLDIAHSA--LEHAKRHF--YDVLIVDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDA 236
Cdd:COG1419 212 LKTYARILGV----------PVEVAYDPeeLKEALERLrdKDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVLSA 281
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 738652318 237 -MQGQDAVNVAKAFSDvLPLTGVVMTKLDGDSRGGAALSVRHVTGKPLKFVGTSEKL-DGLEIFYPERMAQRVLG 309
Cdd:COG1419 282 tTKYEDLKEIVEAFSS-LGLDGLILTKLDETASLGSILNLLIRTGLPLSYITNGQRVpEDIEVADPERLARLLLG 355
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
106-291 |
1.06e-31 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 120.80 E-value: 1.06e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 106 VILMAGLQGAGKTTTTAKLARLLregelTQNGKKidkkkVLVVSADVYRPAAIEQLKTVAAQVGVDFFPSDGSQKPLDIA 185
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWL-----LSNGFR-----VLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 186 HSALEHAKRHFYDVLIVDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDAMQGQDAVNVAKAFSDVL----------PL 255
Cdd:cd17876 72 KEAIKYARDQGFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnprLI 151
|
170 180 190
....*....|....*....|....*....|....*..
gi 738652318 256 TGVVMTKLDG-DSRGGAALSVRHVTGKPLKFVGTSEK 291
Cdd:cd17876 152 DGIVLTKFDTiDDKVGAALSMVYATGQPIVFVGTGQT 188
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
106-307 |
9.15e-31 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 117.65 E-value: 9.15e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 106 VILMAGLQGAGKTTTTAKLA-RL-LREGeltqngkkidkKKVLVVSADVYRPAAIEQLKTVAAQVGVDFFPSDGSQKpld 183
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAaRYvLKKG-----------KKVALITTDTYRIGAVEQLKTYAEIMGIPVEVAEDPED--- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 184 iAHSALEHAKRhfYDVLIVDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDA-MQGQDAVNVAKAFSdVLPLTGVVMTK 262
Cdd:cd17873 68 -LADALERLSD--RDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSAtTKAKDLKEIIERFS-PLGYRGLILTK 143
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 738652318 263 LDGDSRGGAALSVRHVTGKPLKFVGTSEKL-DGLEIFYPERMAQRV 307
Cdd:cd17873 144 LDETTSLGSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
106-309 |
2.07e-19 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 90.34 E-value: 2.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 106 VILMAGLQGAGKTTTTAKLA-RLLregeltqngKKIDKKKVLVVSADVYRPAAIEQLKTVAAQVGVdffpsdgsqkPLDI 184
Cdd:PRK05703 223 VVALVGPTGVGKTTTLAKLAaRYA---------LLYGKKKVALITLDTYRIGAVEQLKTYAKIMGI----------PVEV 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 185 AHSA--LEHAKRHF--YDVLIVDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDAMQGQ--DAVNVAKAFSDvLPLTGV 258
Cdd:PRK05703 284 VYDPkeLAKALEQLrdCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKyeDLKDIYKHFSR-LPLDGL 362
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 738652318 259 VMTKLDGDSRGGAALSVRHVTGKPLKFVGTSEKL-DGLEIFYPERMAQRVLG 309
Cdd:PRK05703 363 IFTKLDETSSLGSILSLLIESGLPISYLTNGQRVpDDIKVANPEELVRLLLG 414
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
5-82 |
4.83e-18 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 78.28 E-value: 4.83e-18
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 738652318 5 LTNRLSRVVKTMRGQARLTEANTQEMLREVRMALLEADVALPVVREFIQEVKEKAMGQEVvgsLNPGQALVGVVSDEL 82
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVGEKK---LKPPQEVKKILKEEL 75
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
9-86 |
6.90e-18 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 77.98 E-value: 6.90e-18
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 738652318 9 LSRVVKTMRGQARLTEANTQEMLREVRMALLEADVALPVVREFIQEVKEKAMGqEVVGSLNPGQALVGVVSDELTRIM 86
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKG-EVLKGLTPKQEVKKILKEELVKIL 77
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
71-292 |
5.14e-14 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 73.60 E-value: 5.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 71 GQALVGVVSDELTRIMGGDLPLAETELSLAAQPPAVILMaGLQGAGKTTTTAKLAR--LLREGeltqngkkidKKKVLVV 148
Cdd:PRK14722 105 GYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALM-GPTGVGKTTTTAKLAArcVMRFG----------ASKVALL 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 149 SADVYRPAAIEQLKTVAAQVGVdffPSDGSQKPLDIAHSALEHAKRHfydVLIVDTAGRLGIDQDMMDEISALHRFLKPV 228
Cdd:PRK14722 174 TTDSYRIGGHEQLRIFGKILGV---PVHAVKDGGDLQLALAELRNKH---MVLIDTIGMSQRDRTVSDQIAMLHGADTPV 247
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 738652318 229 ETLFVVDAMQGQDAVN-VAKAFSD-------VLP-LTGVVMTKLDGDSRGGAALSVRHVTGKPLKFVGTSEKL 292
Cdd:PRK14722 248 QRLLLLNATSHGDTLNeVVQAYRSaagqpkaALPdLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKV 320
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
20-206 |
1.05e-13 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 71.60 E-value: 1.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 20 ARLTEANTQEMLREVRMALLEADVALPVVREFIQEVKEKAMGQEVVgslnpgQALVGVVSDELTRIMGGDLPLAEtelsl 99
Cdd:TIGR03499 125 AGLAWLQRPPERAKLYERLLEAGVSEELARELLEKLPEDADAEDAW------RWLREALEGMLPVKPEEDPILEQ----- 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 100 aaqpPAVILMAGLQGAGKTTTTAKLA-RLLREGEltqngkkidKKKVLVVSADVYRPAAIEQLKTVAAQVGVdffpsdgs 178
Cdd:TIGR03499 194 ----GGVIALVGPTGVGKTTTLAKLAaRFALEHG---------KKKVALITTDTYRIGAVEQLKTYAEILGI-------- 252
|
170 180 190
....*....|....*....|....*....|..
gi 738652318 179 qkPLDIAHSA--LEHAKRHF--YDVLIVDTAG 206
Cdd:TIGR03499 253 --PVKVARDPkeLREALDRLrdKDLILIDTAG 282
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
81-275 |
4.49e-12 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 68.09 E-value: 4.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 81 ELTRIMGGDLPLAETELSLAAQPP----AVILMAGLQGAGKTTTTAKLARLLREgeltqngkKIDKKKVLVVSADVYRPA 156
Cdd:PRK12727 323 ELHRGRGLMLGLLSKRLPVAPVDPlergGVIALVGPTGAGKTTTIAKLAQRFAA--------QHAPRDVALVTTDTQRVG 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 157 AIEQLKTVAAQVGVDFFPSDGSQKPLDIahsaLEHAKRhfYDVLIVDTAGRLGIDQDMMDEISALhRFLKPVETLFVVDA 236
Cdd:PRK12727 395 GREQLHSYGRQLGIAVHEADSAESLLDL----LERLRD--YKLVLIDTAGMGQRDRALAAQLNWL-RAARQVTSLLVLPA 467
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 738652318 237 -MQGQDAVNVAKAFSDVLPlTGVVMTKLDGDSRGGAALSV 275
Cdd:PRK12727 468 nAHFSDLDEVVRRFAHAKP-QGVVLTKLDETGRFGSALSV 506
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
90-304 |
1.03e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 64.05 E-value: 1.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 90 LPLAETELSLAAQPpAVILMAGLQGAGKTTTTAKLAR--LLREGeltqngkkidKKKVLVVSADVYRPAAIEQLKTVAAQ 167
Cdd:PRK14723 172 LPVLRDEDALLAQG-GVLALVGPTGVGKTTTTAKLAArcVAREG----------ADQLALLTTDSFRIGALEQLRIYGRI 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 168 VGVDFFpsdgSQKPLDIAHSALEHAK-RHfydVLIVDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDAMQGQDAVN-V 245
Cdd:PRK14723 241 LGVPVH----AVKDAADLRFALAALGdKH---LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNeV 313
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 738652318 246 AKAF-SDVLP-LTGVVMTKLDGDSRGGAALSV--RHVTgkPLKFVGTSEKLdgleifyPERMA 304
Cdd:PRK14723 314 VHAYrHGAGEdVDGCIITKLDEATHLGPALDTviRHRL--PVHYVSTGQKV-------PEHLE 367
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
106-309 |
5.76e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 61.29 E-value: 5.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 106 VILMAGLQGAGKTTTTAKLARLLregeLTQNgkkidkKKVLVVSADVYRPAAIEQLKTVAAQVGVDFFPSdgsQKPLDIA 185
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQL----LKQN------RTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---TSPAELE 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 186 HSALEHAKRHFYDVLIVDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDA-MQGQDAVNVAKAFSDVlPLTGVVMTKLD 264
Cdd:PRK12726 275 EAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSgMKSADVMTILPKLAEI-PIDGFIITKMD 353
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 738652318 265 GDSRGGAALSVRHVTGKPLKFVGTSEKLDGlEIFYPER--MAQRVLG 309
Cdd:PRK12726 354 ETTRIGDLYTVMQETNLPVLYMTDGQNITE-NIFRPKSrwLAERFVG 399
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
106-264 |
1.15e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 57.28 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 106 VILMAGLQGAGKTTTTAKLAR--LLREGeltqngkkidkKKVLVVSADVYRPAAIEQLKTVAAQVGVDFFPSDGSQKpld 183
Cdd:PRK12724 225 VVFFVGPTGSGKTTSIAKLAAkyFLHMG-----------KSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKK--- 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 184 iahsALEHAKRHFYDVLIVDTAGRLGIDQDMMDEISALHRFL---KPVETLFVVDAMQGQDAVN-VAKAFsDVLPLTGVV 259
Cdd:PRK12724 291 ----FKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFgekDSVENLLVLSSTSSYHHTLtVLKAY-ESLNYRRIL 365
|
....*
gi 738652318 260 MTKLD 264
Cdd:PRK12724 366 LTKLD 370
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
103-226 |
2.21e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 53.15 E-value: 2.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 103 PPAVILMAGLQGAGKTTTTAKLARLLREgeltqngkkiDKKKVLVVSADVYRPAAIEQLKtvaaQVGVDFFPSDGSQKpl 182
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGP----------PGGGVIYIDGEDILEEVLDQLL----LIIVGGKKASGSGE-- 64
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 738652318 183 DIAHSALEHAKRHFYDVLIVDTAGRLGIDQDMMDEISALHRFLK 226
Cdd:smart00382 65 LRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLL 108
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
84-277 |
9.92e-07 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 51.12 E-value: 9.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 84 RIMGGDLPLAETELSLAAQPPAVILMaGLQGAGKTTTTAKLAR--LLREGeltqngkkidKKKVLVVSADVYRPAAIEQL 161
Cdd:PRK06995 237 SALAKNLPVLDSEDALLDRGGVFALM-GPTGVGKTTTTAKLAArcVMRHG----------ASKVALLTTDSYRIGGHEQL 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 162 KTVAAQVGVDFFPSDGSQKpLDIAHSALehakRHFYDVLIvDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDAMQGQD 241
Cdd:PRK06995 306 RIYGKILGVPVHAVKDAAD-LRLALSEL----RNKHIVLI-DTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGD 379
|
170 180 190
....*....|....*....|....*....|....*....
gi 738652318 242 AVN-VAKAFSDvLPLTGVVMTKLDGDSRGGAALSV--RH 277
Cdd:PRK06995 380 TLNeVVQAYRG-PGLAGCILTKLDEAASLGGALDVviRY 417
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
107-336 |
1.19e-06 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 50.84 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 107 ILMAGLQGAGKTTTTAKLARLLregeltqNGKkidKKKVLVVSADVYRPAAIEQLKtvaaqvgvDFFPSDGSQKPLDIAH 186
Cdd:PRK11889 244 IALIGPTGVGKTTTLAKMAWQF-------HGK---KKTVGFITTDHSRIGTVQQLQ--------DYVKTIGFEVIAVRDE 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 187 SALEHAKRHF-----YDVLIVDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDA-MQGQDAVNVAKAFSDVlPLTGVVM 260
Cdd:PRK11889 306 AAMTRALTYFkeearVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKDMIEIITNFKDI-HIDGIVF 384
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 738652318 261 TKLDGDSRGGAALSVRHVTGKPLKFVgtsekLDGLEIfypermaqrvlgmgdilslveqtKRNIDIAEAEKMAAKL 336
Cdd:PRK11889 385 TKFDETASSGELLKIPAVSSAPIVLM-----TDGQDV-----------------------KKNIHIATAEHLAKQM 432
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
114-269 |
1.33e-06 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 49.27 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 114 GAGKTTTTAKLARLLREgeltqngkkiDKKKVLVVSADVYRPAA---------IEQLKTVAA------------------ 166
Cdd:pfam01656 9 GVGKTTLAANLARALAR----------RGLRVLLIDLDPQSNNSsveglegdiAPALQALAEglkgrvnldpillkeksd 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 167 QVGVDFFPSD----------GSQKPLDIAHSALEHAKRHfYDVLIVDTAGrlGIDQDMMDEISALHRFLKPV--ETLFVV 234
Cdd:pfam01656 79 EGGLDLIPGNidlekfekelLGPRKEERLREALEALKED-YDYVIIDGAP--GLGELLRNALIAADYVIIPLepEVILVE 155
|
170 180 190
....*....|....*....|....*....|....*..
gi 738652318 235 DAMQ-GQDAVNVAKAFSD-VLPLTGVVMTKLDGDSRG 269
Cdd:pfam01656 156 DAKRlGGVIAALVGGYALlGLKIIGVVLNKVDGDNHG 192
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
106-275 |
5.97e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 48.41 E-value: 5.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 106 VILMAGLQGAGKTTTTAKLAR--LLREGeltqngkkidKKKVLVVSADVYRPAAIEQLKTVAAQVGVdffpSDGSQKPLD 183
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLAAraVIRHG----------ADKVALLTTDSYRIGGHEQLRIYGKLLGV----SVRSIKDIA 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 184 IAHSALeHAKRHFYDVLIvDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDAMQGQDAVN-VAKAFSDVlPLTGVVMTK 262
Cdd:PRK14721 259 DLQLML-HELRGKHMVLI-DTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDeVISAYQGH-GIHGCIITK 335
|
170
....*....|...
gi 738652318 263 LDGDSRGGAALSV 275
Cdd:PRK14721 336 VDEAASLGIALDA 348
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
107-308 |
2.40e-05 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 45.89 E-value: 2.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 107 ILMAGLQGAGKTTTTAKLARLLregeltqNGKkidKKKVLVVSADVYRPAAIEQLKTVAAQVGVDFFPSDgSQKPLDIAH 186
Cdd:PRK06731 78 IALIGPTGVGKTTTLAKMAWQF-------HGK---KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR-DEAAMTRAL 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 187 SALEHAKRhfYDVLIVDTAGRLGIDQDMMDEISALHRFLKPVETLFVVDA-MQGQDAVNVAKAFSDVlPLTGVVMTKLDG 265
Cdd:PRK06731 147 TYFKEEAR--VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKDMIEIITNFKDI-HIDGIVFTKFDE 223
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 738652318 266 DSRGGAALSVRHVTGKPLKFVGTSEKL-DGLEIFYPERMAQRVL 308
Cdd:PRK06731 224 TASSGELLKIPAVSSAPIVLMTDGQDVkKNIHIATAEHLAKQML 267
|
|
| Mrp |
COG0489 |
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ... |
17-269 |
3.26e-05 |
|
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440255 [Multi-domain] Cd Length: 289 Bit Score: 45.56 E-value: 3.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 17 RGQARLTEANTQEMLREVRMALLEADVALPVVREFIQEVKEKAMGQEVVGSLNPGQALVGVVSDELTRIMGGDLPLAETE 96
Cdd:COG0489 4 AALELLLLREEAQALLLLLLLLLLLLRLEEAAAAAALAAAAPAAAAPAPLPPAPALLLLLLLLLGLLLLLLLALALLLLL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 97 LSLAAQPPAVILM--AGLQGAGKTTTTAKLARLLRegeltQNGkkidkKKVLVVSADVYRP------------------- 155
Cdd:COG0489 84 LLLLLRLLLEVIAvtSGKGGEGKSTVAANLALALA-----QSG-----KRVLLIDADLRGPslhrmlglenrpglsdvla 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 156 --AAIEQLKTVAAQVGVDFFPSdGSQKPLD---IAHSA----LEHAKRHfYDVLIVDTA-GRLGID----QDMMDeisal 221
Cdd:COG0489 154 geASLEDVIQPTEVEGLDVLPA-GPLPPNPselLASKRlkqlLEELRGR-YDYVIIDTPpGLGVADatllASLVD----- 226
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 738652318 222 hrflkpvETLFVVDA--MQGQDAVNVAKAFSDV-LPLTGVVMTKLDGDSRG 269
Cdd:COG0489 227 -------GVLLVVRPgkTALDDVRKALEMLEKAgVPVLGVVLNMVCPKGER 270
|
|
| ParA |
COG1192 |
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ... |
105-268 |
6.35e-04 |
|
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440805 [Multi-domain] Cd Length: 253 Bit Score: 41.38 E-value: 6.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 105 AVILMAGlqGAGKTTTTAKLARLLREgeltqngkkiDKKKVLVVSAD-------------------VY----RPAAIEQL 161
Cdd:COG1192 5 AVANQKG--GVGKTTTAVNLAAALAR----------RGKRVLLIDLDpqgnltsglgldpddldptLYdlllDDAPLEDA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 162 KTVAAQVGVDFFPSDGS-----------QKPLDIAHSALEHAKRHfYDVLIVDTAGRLGIdqdMMdeISAL---HRFLKP 227
Cdd:COG1192 73 IVPTEIPGLDLIPANIDlagaeielvsrPGRELRLKRALAPLADD-YDYILIDCPPSLGL---LT--LNALaaaDSVLIP 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 738652318 228 VET-LFVVDAM-QGQDAVN-VAKAFSDVLPLTGVVMTKLDGDSR 268
Cdd:COG1192 147 VQPeYLSLEGLaQLLETIEeVREDLNPKLEILGILLTMVDPRTR 190
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
106-231 |
2.79e-03 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 39.88 E-value: 2.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 106 VILMAGLQGAGKTTTTAKLARLLREGELTqNGKKIDKKKVLVVSADVYRPAAIEQLKTVAAQVGVDF--------FPSDG 177
Cdd:COG3598 15 VTLLAGPPGTGKSFLALQLAAAVAAGGPW-LGRRVPPGKVLYLAAEDDRGELRRRLKALGADLGLPFadldgrlrLLSLA 93
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 738652318 178 SQKPLDIAHSALEHA-KRHFYDVLIVDTAGRLGIdqdmMDEISALH--RFLKPVETL 231
Cdd:COG3598 94 GDLDDTDDLEALERAiEEEGPDLVVIDPLARVFG----GDENDAEEmrAFLNPLDRL 146
|
|
| Zeta_toxin |
pfam06414 |
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is ... |
104-205 |
2.90e-03 |
|
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Pssm-ID: 428926 Cd Length: 192 Bit Score: 38.88 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 104 PAVILMAGLQGAGKTTTTAKLARllregELTQNGkkidkkKVLVVSADVYR---PAAIEQLKTVAAQVGvDFFPSDGSQk 180
Cdd:pfam06414 11 PKAILLGGQPGAGKTELARALLD-----ELGRQG------NVVRIDPDDFRelhPHYRELQAADPKTAS-EYTQPDASR- 77
|
90 100
....*....|....*....|....*
gi 738652318 181 pldIAHSALEHAKRHFYDVlIVDTA 205
Cdd:pfam06414 78 ---WVEKLLQHAIENGYNI-ILEGT 98
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
104-286 |
3.26e-03 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 39.88 E-value: 3.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 104 PAVILMAGLQGAGKTTTTAKLArllregELTQNGKKIDKKKVLVVSADVYRPAAIEQLKTVAAQVGVdffPSDGSQKPLD 183
Cdd:PRK12723 174 KRVFILVGPTGVGKTTTIAKLA------AIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGI---PVKAIESFKD 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 184 IAHSALEHAKrhfYDVLIVDTAGRLGID----QDMMDEISALHRflkPVETLFVVDAMqgQDAVNVAKAFSDVLPL--TG 257
Cdd:PRK12723 245 LKEEITQSKD---FDLVLVDTIGKSPKDfmklAEMKELLNACGR---DAEFHLAVSST--TKTSDVKEIFHQFSPFsyKT 316
|
170 180
....*....|....*....|....*....
gi 738652318 258 VVMTKLDGDSRGGAALSVRHVTGKPLKFV 286
Cdd:PRK12723 317 VIFTKLDETTCVGNLISLIYEMRKEVSYV 345
|
|
| SIMIBI |
cd01983 |
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
104-262 |
4.53e-03 |
|
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 37.03 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 104 PAVILMAGLQGAGKTTTTAKLARLLREgeltqngkkiDKKKVLVVSADvyrpaaieqlktvaaqvgvdffpsdgsqkpld 183
Cdd:cd01983 1 RVIAVTGGKGGVGKTTLAAALAVALAA----------KGYKVLLIDLD-------------------------------- 38
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652318 184 iahsalehakrhfyDVLIVDTAGRLGIDQDmMDEISALHRFLKPVETLFVVDAMQG--QDAVNVAKAFSDVLP---LTGV 258
Cdd:cd01983 39 --------------DYVLIDGGGGLETGLL-LGTIVALLALKKADEVIVVVDPELGslLEAVKLLLALLLLGIgirPDGI 103
|
....
gi 738652318 259 VMTK 262
Cdd:cd01983 104 VLNK 107
|
|
| |
