|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09183 |
PRK09183 |
transposase/IS protein; Provisional |
1-257 |
3.11e-151 |
|
transposase/IS protein; Provisional
Pssm-ID: 181681 Cd Length: 259 Bit Score: 421.81 E-value: 3.11e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 1 MNLQSERIADLCRQLGLYAINEAWPQVSERNLQSEGSYADFVEQLLMEELKAKGVRSQTTLLKFAGLPSIKTVEEYDFAF 80
Cdd:PRK09183 2 MELQHQRLMALCGQLQLESLISAAPALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 81 ASGVSKTKVTELSSLTFITRQENVVLLGPSGVGKTHLAIGLAYKAIMSQLKVRFMTAADLMLQLMAAYRQGKLKSYMNRV 160
Cdd:PRK09183 82 ATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 161 VMAPKLLVIDEIGYLPFGREEANLFFNVVAKRYEKGSLLLTSNLPFSQWADTFAGDTSLTAAMLDRLLHHCHVVQMSGES 240
Cdd:PRK09183 162 VMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGES 241
|
250
....*....|....*..
gi 738652574 241 YRLKDKRKVGFISTKVS 257
Cdd:PRK09183 242 YRLKQKRKAGVIAEANP 258
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
12-245 |
1.63e-115 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 330.59 E-value: 1.63e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 12 CRQLGLYAINEAWPQVSERNLQSEGSYADFVEQLLMEELKAKGVRSQTTLLKFAGLPSIKTVEEYDFAFASGVSKTKVTE 91
Cdd:NF038214 1 LRQLKLPGMARALEELAEQAAREELSFEEFLALLLEAELAERENRRIERRLKRARFPAAKTLEDFDFTAAPGLDKAQIRE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 92 LSSLTFITRQENVVLLGPSGVGKTHLAIGLAYKAIMSQLKVRFMTAADLMLQLMAAYRQGKLKSYMNRvVMAPKLLVIDE 171
Cdd:NF038214 81 LATLDFIERAENVLLLGPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLAQARADGRLGRLLRR-LARYDLLIIDE 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 738652574 172 IGYLPFGREEANLFFNVVAKRYEKGSLLLTSNLPFSQWADTFaGDTSLTAAMLDRLLHHCHVVQMSGESYRLKD 245
Cdd:NF038214 160 LGYLPFSREGANLLFELIADRYERGSTIITSNLPFSEWGEVF-GDPTLAAAILDRLVHHAHILELKGESYRLKE 232
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
4-246 |
8.66e-106 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 306.32 E-value: 8.66e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 4 QSERIADLCRQLGLYAINEAWPQVSERNLQSEGSYADFVEQLLMEELKAKGVRSQTTLLKFAGLPSIKTVEEYDFAFASG 83
Cdd:COG1484 2 LMEELKELLKALKLPGMAEALDELLAQAACDELSYEEFLALLLEAEVAEREQRRIERRLKAARFPAAKTLEDFDFDAQPG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 84 VSKTKVTELSSLTFITRQENVVLLGPSGVGKTHLAIGLAYKAIMSQLKVRFMTAADLMLQLMAAYRQGKLKSYMNRvVMA 163
Cdd:COG1484 82 LDRRQILELATLDFIERGENLILLGPPGTGKTHLAIALGHEACRAGYRVRFTTAPDLVNELKEARADGRLERLLKR-LAK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 164 PKLLVIDEIGYLPFGREEANLFFNVVAKRYEKGSLLLTSNLPFSQWADTFaGDTSLTAAMLDRLLHHCHVVQMSGESYRL 243
Cdd:COG1484 161 VDLLILDELGYLPLDAEGAELLFELISDRYERRSTIITSNLPFSEWGEVF-GDPTLATAILDRLVHHAHIIELKGESYRL 239
|
...
gi 738652574 244 KDK 246
Cdd:COG1484 240 KEA 242
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
11-248 |
5.01e-98 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 286.26 E-value: 5.01e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 11 LCRQLGLYAINEAWPQVSERNLQSEGSYADFVEQLLMEELKAKGVRSQTTLLKFAGLPSIKTVEEYDFAFASGVSKTKVT 90
Cdd:pfam01695 2 QLKQLKLPGMAEAWEELSQQAASTSLSYEEFLEHLLEEELAWRDTRRLERLLRMAKLPPHKTLEDFDFTFAPGLDQRIVA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 91 ELSSLTFITRQENVVLLGPSGVGKTHLAIGLAYKAIMSQLKVRFMTAADLMLQLMAAYRQGKLKSYMnRVVMAPKLLVID 170
Cdd:pfam01695 82 ELASLSFIDRAQNVVLLGPPGVGKTHLAIALGVEACRAGYSVRFTSAADLVNQLKRAHGDGKLTRKL-QQLLKPDVLILD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 738652574 171 EIGYLPFGREEANLFFNVVAKRYEKGSLLLTSNLPFSQWADTFaGDTSLTAAMLDRLLHHCHVVQMSGESYRLKDKRK 248
Cdd:pfam01695 161 EWGYLPLDQAEANLLFQVISKRYEHRSIILTSNLPFGEWGQVF-GDAVLATAILDRLLHHCHIVPIKGESYRLKTKSE 237
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
89-208 |
2.72e-12 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 62.93 E-value: 2.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 89 VTELSSLTFITRQENVVLLGPSGVGKTHLAIGLAYKAIMSQLKVRFMTAADLMLQLMAAyrqGKLKSYMNRVV------M 162
Cdd:cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVA---ELFGHFLVRLLfelaekA 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 738652574 163 APKLLVIDEIGYLPFGREEANL----FFNVVAKRYEKGSLLLTSNLPFSQ 208
Cdd:cd00009 84 KPGVLFIDEIDSLSRGAQNALLrvleTLNDLRIDRENVRVIGATNRPLLG 133
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
100-230 |
2.87e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.61 E-value: 2.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 100 RQENVVLLGPSGVGKTHLAIGLAYKAIMSQLKVRFMTAADLMLQLMAAYRQGKLKSY--------MNRVVMA------PK 165
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKkasgsgelRLRLALAlarklkPD 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 738652574 166 LLVIDEIGYLPFGREEANLFFNVVA------KRYEKGSLLLTSNlpfsqwaDTFAGDTSLTAAMLDRLLHH 230
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLEELrlllllKSEKNLTVILTTN-------DEKDLGPALLRRRFDRRIVL 144
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
108-172 |
9.18e-06 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 46.37 E-value: 9.18e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 738652574 108 GPSGVGKTHL--AIGLAYKAIMSQLKVRFMTAADLMLQLMAAYRQGKLKSYMNRvVMAPKLLVIDEI 172
Cdd:TIGR00362 144 GGVGLGKTHLlhAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEK-YRSVDLLLIDDI 209
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
104-140 |
7.75e-03 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 37.59 E-value: 7.75e-03
10 20 30
....*....|....*....|....*....|....*..
gi 738652574 104 VVLLGPSGVGKTHLAIGLAYkaimsqlkvRFMTAADL 140
Cdd:NF040586 32 QALHGLGGVGKTQLALEYAH---------RFRADYDL 59
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09183 |
PRK09183 |
transposase/IS protein; Provisional |
1-257 |
3.11e-151 |
|
transposase/IS protein; Provisional
Pssm-ID: 181681 Cd Length: 259 Bit Score: 421.81 E-value: 3.11e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 1 MNLQSERIADLCRQLGLYAINEAWPQVSERNLQSEGSYADFVEQLLMEELKAKGVRSQTTLLKFAGLPSIKTVEEYDFAF 80
Cdd:PRK09183 2 MELQHQRLMALCGQLQLESLISAAPALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 81 ASGVSKTKVTELSSLTFITRQENVVLLGPSGVGKTHLAIGLAYKAIMSQLKVRFMTAADLMLQLMAAYRQGKLKSYMNRV 160
Cdd:PRK09183 82 ATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 161 VMAPKLLVIDEIGYLPFGREEANLFFNVVAKRYEKGSLLLTSNLPFSQWADTFAGDTSLTAAMLDRLLHHCHVVQMSGES 240
Cdd:PRK09183 162 VMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGES 241
|
250
....*....|....*..
gi 738652574 241 YRLKDKRKVGFISTKVS 257
Cdd:PRK09183 242 YRLKQKRKAGVIAEANP 258
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
12-245 |
1.63e-115 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 330.59 E-value: 1.63e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 12 CRQLGLYAINEAWPQVSERNLQSEGSYADFVEQLLMEELKAKGVRSQTTLLKFAGLPSIKTVEEYDFAFASGVSKTKVTE 91
Cdd:NF038214 1 LRQLKLPGMARALEELAEQAAREELSFEEFLALLLEAELAERENRRIERRLKRARFPAAKTLEDFDFTAAPGLDKAQIRE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 92 LSSLTFITRQENVVLLGPSGVGKTHLAIGLAYKAIMSQLKVRFMTAADLMLQLMAAYRQGKLKSYMNRvVMAPKLLVIDE 171
Cdd:NF038214 81 LATLDFIERAENVLLLGPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLAQARADGRLGRLLRR-LARYDLLIIDE 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 738652574 172 IGYLPFGREEANLFFNVVAKRYEKGSLLLTSNLPFSQWADTFaGDTSLTAAMLDRLLHHCHVVQMSGESYRLKD 245
Cdd:NF038214 160 LGYLPFSREGANLLFELIADRYERGSTIITSNLPFSEWGEVF-GDPTLAAAILDRLVHHAHILELKGESYRLKE 232
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
4-246 |
8.66e-106 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 306.32 E-value: 8.66e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 4 QSERIADLCRQLGLYAINEAWPQVSERNLQSEGSYADFVEQLLMEELKAKGVRSQTTLLKFAGLPSIKTVEEYDFAFASG 83
Cdd:COG1484 2 LMEELKELLKALKLPGMAEALDELLAQAACDELSYEEFLALLLEAEVAEREQRRIERRLKAARFPAAKTLEDFDFDAQPG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 84 VSKTKVTELSSLTFITRQENVVLLGPSGVGKTHLAIGLAYKAIMSQLKVRFMTAADLMLQLMAAYRQGKLKSYMNRvVMA 163
Cdd:COG1484 82 LDRRQILELATLDFIERGENLILLGPPGTGKTHLAIALGHEACRAGYRVRFTTAPDLVNELKEARADGRLERLLKR-LAK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 164 PKLLVIDEIGYLPFGREEANLFFNVVAKRYEKGSLLLTSNLPFSQWADTFaGDTSLTAAMLDRLLHHCHVVQMSGESYRL 243
Cdd:COG1484 161 VDLLILDELGYLPLDAEGAELLFELISDRYERRSTIITSNLPFSEWGEVF-GDPTLATAILDRLVHHAHIIELKGESYRL 239
|
...
gi 738652574 244 KDK 246
Cdd:COG1484 240 KEA 242
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
11-248 |
5.01e-98 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 286.26 E-value: 5.01e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 11 LCRQLGLYAINEAWPQVSERNLQSEGSYADFVEQLLMEELKAKGVRSQTTLLKFAGLPSIKTVEEYDFAFASGVSKTKVT 90
Cdd:pfam01695 2 QLKQLKLPGMAEAWEELSQQAASTSLSYEEFLEHLLEEELAWRDTRRLERLLRMAKLPPHKTLEDFDFTFAPGLDQRIVA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 91 ELSSLTFITRQENVVLLGPSGVGKTHLAIGLAYKAIMSQLKVRFMTAADLMLQLMAAYRQGKLKSYMnRVVMAPKLLVID 170
Cdd:pfam01695 82 ELASLSFIDRAQNVVLLGPPGVGKTHLAIALGVEACRAGYSVRFTSAADLVNQLKRAHGDGKLTRKL-QQLLKPDVLILD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 738652574 171 EIGYLPFGREEANLFFNVVAKRYEKGSLLLTSNLPFSQWADTFaGDTSLTAAMLDRLLHHCHVVQMSGESYRLKDKRK 248
Cdd:pfam01695 161 EWGYLPLDQAEANLLFQVISKRYEHRSIILTSNLPFGEWGQVF-GDAVLATAILDRLLHHCHIVPIKGESYRLKTKSE 237
|
|
| PRK06526 |
PRK06526 |
transposase; Provisional |
5-246 |
6.24e-76 |
|
transposase; Provisional
Pssm-ID: 180607 Cd Length: 254 Bit Score: 230.91 E-value: 6.24e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 5 SERIADLCRQLGLYAINEAWPQVSERNLQSEGSYADFVEQLLMEELKAKGVRSQTTLLKFAGLPSIKTVEEYDFAFASGV 84
Cdd:PRK06526 2 ASELAYLTRALKAPTLAGAVERLAERARAESWSHEEFLAACLQREVAARESHGGEGRIRAARFPARKSLEEFDFDHQRSL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 85 SKTKVTELSSLTFITRQENVVLLGPSGVGKTHLAIGLAYKAIMSQLKVRFMTAADLMLQLMAAYRQGKLKSYMNRVVMAP 164
Cdd:PRK06526 82 KRDTIAHLGTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 165 kLLVIDEIGYLPFGREEANLFFNVVAKRYEKGSLLLTSNLPFSQWADTFaGDTSLTAAMLDRLLHHCHVVQMSGESYRLK 244
Cdd:PRK06526 162 -LLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVF-GDDVVAAAMIDRLVHHAEVISLKGDSYRLK 239
|
..
gi 738652574 245 DK 246
Cdd:PRK06526 240 DR 241
|
|
| PRK08181 |
PRK08181 |
transposase; Validated |
7-258 |
1.48e-40 |
|
transposase; Validated
Pssm-ID: 136670 [Multi-domain] Cd Length: 269 Bit Score: 140.83 E-value: 1.48e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 7 RIADLCRQLGLYAINEAWPQVSERNLQSEGSYADFVEQLLMEELKAKGVRSQTTLLKFAGLPSIKTVEEYDFAFASGVSK 86
Cdd:PRK08181 11 RLGLLLNELRLPTIKTLWPQFAEQADKEGWPAARFLAAIAEHELAERARRRIERHLAEAHLPPGKTLDSFDFEAVPMVSK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 87 TKVTELSS-LTFITRQENVVLLGPSGVGKTHLAIGLAYKAIMSQLKVRFMTAADLMLQLMAAYRQGKLKSYMNRVVMApK 165
Cdd:PRK08181 91 AQVMAIAAgDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKF-D 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 166 LLVIDEIGYLPFGREEANLFFNVVAKRYEKGSLLLTSNLPFSQWADTFAgDTSLTAAMLDRLLHHCHVVQMSGESYR--- 242
Cdd:PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFP-DPAMTLAAVDRLVHHATIFEMNVESYRrrt 248
|
250
....*....|....*..
gi 738652574 243 -LKDKRKVGFISTKVSI 258
Cdd:PRK08181 249 aLERKRGPGRPPTRATI 265
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
100-244 |
1.57e-14 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 71.21 E-value: 1.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 100 RQENVVLL--GPSGVGKTHLAIGLAYKAIMSQLKVRFMTAADLMLQLMAAYR-QGKLKS--YMNRVVMAPkLLVIDEIGY 174
Cdd:PRK08116 111 KKENVGLLlwGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKsSGKEDEneIIRSLVNAD-LLILDDLGA 189
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 738652574 175 ---LPFGREEanlFFNVVAKRYEKG-SLLLTSNLPFSQWADTfagdtsLTAAMLDRLLHHCHVVQMSGESYRLK 244
Cdd:PRK08116 190 erdTEWAREK---VYNIIDSRYRKGlPTIVTTNLSLEELKNQ------YGKRIYDRILEMCTPVENEGKSYRKE 254
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
89-208 |
2.72e-12 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 62.93 E-value: 2.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 89 VTELSSLTFITRQENVVLLGPSGVGKTHLAIGLAYKAIMSQLKVRFMTAADLMLQLMAAyrqGKLKSYMNRVV------M 162
Cdd:cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVA---ELFGHFLVRLLfelaekA 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 738652574 163 APKLLVIDEIGYLPFGREEANL----FFNVVAKRYEKGSLLLTSNLPFSQ 208
Cdd:cd00009 84 KPGVLFIDEIDSLSRGAQNALLrvleTLNDLRIDRENVRVIGATNRPLLG 133
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
104-227 |
2.52e-09 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 56.74 E-value: 2.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 104 VVLLGPSGVGKTHL--AIGLAYKAIMSQLKVRFMTAADLMLQLMAAYRQGKLKSYMNRVVMAPkLLVIDEIGYLPfGREE 181
Cdd:COG0593 37 LFLYGGVGLGKTHLlhAIGNEALENNPGARVVYLTAEEFTNDFINAIRNNTIEEFKEKYRSVD-VLLIDDIQFLA-GKEA 114
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 738652574 182 AN--LF--FNVVakrYEKG-SLLLTSNLPFSQWADtfagdtsltaaMLDRL 227
Cdd:COG0593 115 TQeeFFhtFNAL---REAGkQIVLTSDRPPKELPG-----------LEERL 151
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
100-230 |
2.87e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.61 E-value: 2.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 100 RQENVVLLGPSGVGKTHLAIGLAYKAIMSQLKVRFMTAADLMLQLMAAYRQGKLKSY--------MNRVVMA------PK 165
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKkasgsgelRLRLALAlarklkPD 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 738652574 166 LLVIDEIGYLPFGREEANLFFNVVA------KRYEKGSLLLTSNlpfsqwaDTFAGDTSLTAAMLDRLLHH 230
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLEELrlllllKSEKNLTVILTTN-------DEKDLGPALLRRRFDRRIVL 144
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
106-152 |
2.54e-06 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 47.82 E-value: 2.54e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 738652574 106 LLGPSGVGKTHL--AIGLAYKAIMSQLKVRFMTAADLMLQLMAAYRQGK 152
Cdd:PRK00149 104 IYGGVGLGKTHLlhAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNT 152
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
108-172 |
9.18e-06 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 46.37 E-value: 9.18e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 738652574 108 GPSGVGKTHL--AIGLAYKAIMSQLKVRFMTAADLMLQLMAAYRQGKLKSYMNRvVMAPKLLVIDEI 172
Cdd:TIGR00362 144 GGVGLGKTHLlhAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEK-YRSVDLLLIDDI 209
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
97-246 |
1.77e-05 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 45.28 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 97 FITRQENVVLLGPSGVGKTHLAIGLAyKAIMSQLK-VRFMTAADLMLQLmaayRQGKLKSYMN-----RVVMAPKLLVID 170
Cdd:PRK06835 179 FDKNNENLLFYGNTGTGKTFLSNCIA-KELLDRGKsVIYRTADELIEIL----REIRFNNDKEleevyDLLINCDLLIID 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 171 EIGYLP---FGREEanlFFNVVAKRYEKG-SLLLTSNLPFSQWADTFAGDTSltaamlDRLLHHCHVVQMSGESYRLKDK 246
Cdd:PRK06835 254 DLGTEKiteFSKSE---LFNLINKRLLRQkKMIISTNLSLEELLKTYSERIS------SRLLGNFTLLKFYGEDIRIKKN 324
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
97-242 |
2.15e-05 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 44.44 E-value: 2.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 97 FITRQENVVLLGPSGVGKTHLAIGLAYKAIMSQLKVRFMTAADLMLQLMAAYRQGKLKSYMNRVVMAPKLLVIDEIGYLP 176
Cdd:PRK12377 97 LMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQR 176
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 738652574 177 FGREEANLFFNVVAKRYEK-GSLLLTSNLPFSqwadtfAGDTSLTAAMLDRLlhhchvvQMSG--------ESYR 242
Cdd:PRK12377 177 ETKNEQVVLNQIIDRRTASmRSVGMLTNLNHE------AMSTLLGERVMDRM-------TMNGgrwvnfnwESWR 238
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
108-175 |
2.48e-05 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 44.24 E-value: 2.48e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 108 GPSGVGKTHL--AIGLAYKAIMSQLKVRFMTAADLMLQLMAAYRQGKLKSYMNRvVMAPKLLVIDEIGYL 175
Cdd:pfam00308 41 GGVGLGKTHLlhAIGNYALQNAPNLRVVYLTAEEFLNDFVDAIRDNKTNQFKEK-YRNVDVLLIDDIQFL 109
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
104-230 |
7.81e-05 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 41.42 E-value: 7.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 104 VVLLGPSGVGKTHLAiglayKAIMSQLKVRFMT--AADLMLQLMAAyRQGKLKSYMNRV-VMAPKLLVIDEI-------- 172
Cdd:pfam00004 1 LLLYGPPGTGKTTLA-----KAVAKELGAPFIEisGSELVSKYVGE-SEKRLRELFEAAkKLAPCVIFIDEIdalagsrg 74
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 738652574 173 -GYLPFGREEANLFFNV---VAKRYEKGSLLLTSNLPFsqwadtfagdtSLTAAMLDRLLHH 230
Cdd:pfam00004 75 sGGDSESRRVVNQLLTEldgFTSSNSKVIVIAATNRPD-----------KLDPALLGRFDRI 125
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
103-172 |
3.17e-04 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 39.58 E-value: 3.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 103 NVVLLGPSGVGKTHLAigLAYKAIMSQLKV------RFMTAADL-----MLQLMAAYRQGKLKSYMNRvvmaPKLLVIDE 171
Cdd:pfam07728 1 GVLLVGPPGTGKTELA--ERLAAALSNRPVfyvqltRDTTEEDLfgrrnIDPGGASWVDGPLVRAARE----GEIAVLDE 74
|
.
gi 738652574 172 I 172
Cdd:pfam07728 75 I 75
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
103-172 |
5.00e-04 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 39.57 E-value: 5.00e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 738652574 103 NVVLLGPSGVGKTHLAiglayKAIMSQLKVRFM--TAADLMLQLMaAYRQGKLKSYMNRVV-MAPKLLVIDEI 172
Cdd:cd19481 28 GILLYGPPGTGKTLLA-----KALAGELGLPLIvvKLSSLLSKYV-GESEKNLRKIFERARrLAPCILFIDEI 94
|
|
| McrB |
COG1401 |
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ... |
103-135 |
8.30e-04 |
|
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];
Pssm-ID: 441011 [Multi-domain] Cd Length: 477 Bit Score: 40.14 E-value: 8.30e-04
10 20 30
....*....|....*....|....*....|...
gi 738652574 103 NVVLLGPSGVGKTHLAIGLAYkAIMSQLKVRFM 135
Cdd:COG1401 223 NVILAGPPGTGKTYLARRLAE-ALGGEDNGRIE 254
|
|
| COG1373 |
COG1373 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
104-215 |
1.18e-03 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440984 [Multi-domain] Cd Length: 405 Bit Score: 39.54 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 104 VVLLGPSGVGKTHLAiglayKAIMSQLK-VRFMTAADLMLQLMAAYRQGKLKSYMNRVVMAPKLLVIDEIGYLPfgreEA 182
Cdd:COG1373 23 VVITGPRQVGKTTLL-----KQLAKELEnILYINLDDPRLRALAEEDPDDLLEALKELYPGKTYLFLDEIQRVP----EW 93
|
90 100 110
....*....|....*....|....*....|....*.
gi 738652574 183 NLFFNVVAKRYEKGSLLLT-SNLPF--SQWADTFAG 215
Cdd:COG1373 94 EDALKRLVDDGRNGRFILTgSSSLLlsKELAESLAG 129
|
|
| AAA_14 |
pfam13173 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
104-215 |
1.53e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 463799 [Multi-domain] Cd Length: 128 Bit Score: 37.57 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 104 VVLLGPSGVGKTHLAIGLAYKAIMSQlKVRFMTAADLMLQLMAAYRQgkLKSYMNRVVMAPKLLVIDEIGYLPfgreEAN 183
Cdd:pfam13173 5 LVITGPRQVGKTTLLLQLIKELLPPE-NILYINLDDPRLLKLADFEL--LELFLELLYPGKTYLFLDEIQRVP----DWE 77
|
90 100 110
....*....|....*....|....*....|....*
gi 738652574 184 LFFNVVAKRYEKGSLLLT-SNLPF--SQWADTFAG 215
Cdd:pfam13173 78 LALKRLYDDGPNGRVILTgSSALLlsKEIAESLAG 112
|
|
| RecA-like_NVL_r1-like |
cd19518 |
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
104-182 |
2.63e-03 |
|
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410926 [Multi-domain] Cd Length: 169 Bit Score: 37.77 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738652574 104 VVLLGPSGVGKTHLAiglayKAIMSQLKVRFMT-AADLMLQLMAAYRQGKLKS-YMNRVVMAPKLLVIDEIGYLPFGREE 181
Cdd:cd19518 37 VLLHGPPGCGKTMLA-----NAIAGELKVPFLKiSATEIVSGVSGESEEKIRElFDQAISNAPCIVFIDEIDAITPKRES 111
|
.
gi 738652574 182 A 182
Cdd:cd19518 112 A 112
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
103-137 |
6.07e-03 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 37.17 E-value: 6.07e-03
10 20 30
....*....|....*....|....*....|....*
gi 738652574 103 NVVLLGPSGVGKTHLAiglayKAIMSQLKVRFMTA 137
Cdd:COG1223 37 KILFYGPPGTGKTMLA-----EALAGELKLPLLTV 66
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
104-140 |
7.75e-03 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 37.59 E-value: 7.75e-03
10 20 30
....*....|....*....|....*....|....*..
gi 738652574 104 VVLLGPSGVGKTHLAIGLAYkaimsqlkvRFMTAADL 140
Cdd:NF040586 32 QALHGLGGVGKTQLALEYAH---------RFRADYDL 59
|
|
| AAA_2 |
pfam07724 |
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ... |
103-145 |
9.68e-03 |
|
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400187 [Multi-domain] Cd Length: 168 Bit Score: 36.02 E-value: 9.68e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 738652574 103 NVVLLGPSGVGKTHLAIGLAYKAIMSQlkvRFMTAADlMLQLM 145
Cdd:pfam07724 5 SFLFLGPTGVGKTELAKALAELLFGDE---RALIRID-MSEYM 43
|
|
| |
