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Conserved domains on  [gi|738877673|ref|WP_036765661|]
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YdcH family protein [Photobacterium damselae]

Protein Classification

YdcH family protein( domain architecture ID 10006723)

YdcH family protein similar to Helicobacter pylori protein HP1242

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YdcH COG2841
Uncharacterized conserved protein YdcH, DUF465 family [Function unknown];
11-81 4.97e-20

Uncharacterized conserved protein YdcH, DUF465 family [Function unknown];


:

Pssm-ID: 442089  Cd Length: 71  Bit Score: 75.58  E-value: 4.97e-20
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 738877673 11 EFPDYIDTISHLNQTDTAFAKQSKLYDNLDNEIRKLELRGSPIDDHEMNLMKAERAELKDRLYQTIISAQK 81
Cdd:COG2841   1 EFPEYRDLIHALKQSDAHFARLFDEYHELDKEIHRLETGVEPISDEELEELKKERLRLKDELYAMLKAAKA 71
 
Name Accession Description Interval E-value
YdcH COG2841
Uncharacterized conserved protein YdcH, DUF465 family [Function unknown];
11-81 4.97e-20

Uncharacterized conserved protein YdcH, DUF465 family [Function unknown];


Pssm-ID: 442089  Cd Length: 71  Bit Score: 75.58  E-value: 4.97e-20
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 738877673 11 EFPDYIDTISHLNQTDTAFAKQSKLYDNLDNEIRKLELRGSPIDDHEMNLMKAERAELKDRLYQTIISAQK 81
Cdd:COG2841   1 EFPEYRDLIHALKQSDAHFARLFDEYHELDKEIHRLETGVEPISDEELEELKKERLRLKDELYAMLKAAKA 71
DUF465 pfam04325
Protein of unknown function (DUF465); Family members are found in small bacterial proteins, ...
 29-74 6.42e-09

Protein of unknown function (DUF465); Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C terminal of the motor domain (Myosin pfam00063, Kinesin pfam00225). Members of this family may form coiled coil structures.


Pssm-ID: 461262  Cd Length: 48  Bit Score: 46.60  E-value: 6.42e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 738877673  29 FAKQSKLYDNLDNEIRKLELRGSPIDDHEMNLMKAERAELKDRLYQ 74
Cdd:pfam04325  1 FAKLFEEHRELDKEIRRLEARPEPTDDLELERLKKEKLRLKDEIYR 46
PRK04456 PRK04456
acetyl-CoA decarbonylase/synthase complex subunit beta; Reviewed
 7-64 8.71e-04

acetyl-CoA decarbonylase/synthase complex subunit beta; Reviewed


Pssm-ID: 235302 [Multi-domain]  Cd Length: 463  Bit Score: 35.82  E-value: 8.71e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 738877673   7 SLVHEFPDYIDTISHLNQTDTAFAKQSKlyDNLDNEIRKLELRGSPIddheMNLMKAE 64
Cdd:PRK04456  90 RRIHEFCNYIQGVMHLNQRYDIWIRVSK--DAHAKGLRSLEHIGKAL----MMLFKNE 141
 
Name Accession Description Interval E-value
YdcH COG2841
Uncharacterized conserved protein YdcH, DUF465 family [Function unknown];
11-81 4.97e-20

Uncharacterized conserved protein YdcH, DUF465 family [Function unknown];


Pssm-ID: 442089  Cd Length: 71  Bit Score: 75.58  E-value: 4.97e-20
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 738877673 11 EFPDYIDTISHLNQTDTAFAKQSKLYDNLDNEIRKLELRGSPIDDHEMNLMKAERAELKDRLYQTIISAQK 81
Cdd:COG2841   1 EFPEYRDLIHALKQSDAHFARLFDEYHELDKEIHRLETGVEPISDEELEELKKERLRLKDELYAMLKAAKA 71
DUF465 pfam04325
Protein of unknown function (DUF465); Family members are found in small bacterial proteins, ...
 29-74 6.42e-09

Protein of unknown function (DUF465); Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C terminal of the motor domain (Myosin pfam00063, Kinesin pfam00225). Members of this family may form coiled coil structures.


Pssm-ID: 461262  Cd Length: 48  Bit Score: 46.60  E-value: 6.42e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 738877673  29 FAKQSKLYDNLDNEIRKLELRGSPIDDHEMNLMKAERAELKDRLYQ 74
Cdd:pfam04325  1 FAKLFEEHRELDKEIRRLEARPEPTDDLELERLKKEKLRLKDEIYR 46
PRK04456 PRK04456
acetyl-CoA decarbonylase/synthase complex subunit beta; Reviewed
 7-64 8.71e-04

acetyl-CoA decarbonylase/synthase complex subunit beta; Reviewed


Pssm-ID: 235302 [Multi-domain]  Cd Length: 463  Bit Score: 35.82  E-value: 8.71e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 738877673   7 SLVHEFPDYIDTISHLNQTDTAFAKQSKlyDNLDNEIRKLELRGSPIddheMNLMKAE 64
Cdd:PRK04456  90 RRIHEFCNYIQGVMHLNQRYDIWIRVSK--DAHAKGLRSLEHIGKAL----MMLFKNE 141
PRK11415 PRK11415
hypothetical protein; Provisional
 12-74 9.50e-03

hypothetical protein; Provisional


Pssm-ID: 183127  Cd Length: 74  Bit Score: 31.70  E-value: 9.50e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 738877673 12 FPDYIDTISHLNQTDTAFAKQSKLYDNLDNEIRKLELRGSPIDDHEMNLMKAERAELKDRLYQ 74
Cdd:PRK11415  2 FPEYRDLISRLKNENPRFMSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEMLK 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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