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Conserved domains on  [gi|739087447|ref|WP_036958532|]
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MULTISPECIES: porin family protein [Providencia]

Protein Classification

porin family protein( domain architecture ID 12169018)

porin family protein containing tetratricopeptide repeats and a DUF560 domain belonging to the porin superfamily of outer membrane channels that share a beta-barrel structure

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OM_channels super family cl21487
Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in ...
 198-484 2.13e-45

Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20), which associate as trimers. Maltoporin-like channels have specificities for various sugars and form 18 beta-stranded barrels (18,22), which associate as trimers. Ligand-gated protein channels cooperate with a TonB associated inner membrane complex to actively transport ligands via the proton motive force and they form monomeric, (22,24) barrels. The 150-200 N-terminal residues form a plug that blocks the channel from the periplasmic end.


The actual alignment was detected with superfamily member pfam04575:

Pssm-ID: 473880  Cd Length: 288  Bit Score: 160.20  E-value: 2.13e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  198 WTGSLSFGYKYNSNINQVPDKNKVWETPGGTWKMANPKSSPGLTYDASLSKIIPISSNHSLQIKGTSYGDRYPHYAEFSE 277
Cdd:pfam04575   1 WKFNGGFSYIREDNINNAPDKTTYNFIKSGNWTFPKPKKANGLSYDLGAEKKWPLSGGHYLEFRADTYGKSYWDNKKYND 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  278 NTSSLATLYRFNDANTTIAFGPLIELKTVNEKRRYLGMGGKIEADYQFTPRVILSTSADYQQLHYQKpYDSADGNRSSLH 357
Cdd:pfam04575  81 LSTRAGLGYGYKNAKTDVSVLPFYEKRFYGNDRYYRAIGVRLSKNYWLNPNWQLSGALEYERERYTR-RKHLDGNIYLVS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  358 LTGVYGITPDTSLFLGADATRLTTEVRSDDYDQLGIRGGLYTVLTPDIHLLALATYRESQFKA---FNQMLNVKRHDKEA 434
Cdd:pfam04575 160 ASLIYYPNPRRYWFGGGDYSREDVQDKADSYDRKGIRFGWGQEWGGGLSTRLRASAAKRQYKGkalFSGPFNIKRKDKEY 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 739087447  435 MYFARLSFPNYSLLTFTPYTSYRFRDNRSSADgIYSYHQHEISIGLETRF 484
Cdd:pfam04575 240 NVSLSLWHRDIHLWGITPKLTYSYRKNNSNVP-LYSYNKNNVFVEFSKTF 288
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 70-187 1.88e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.70  E-value: 1.88e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  70 LKNNAQDLGQAIYLAINHRQFQDVQRLLPRYQQLTDADP--LLILFAKAETAKAQNHYPEAIAHYQQILALSPKFLRIKL 147
Cdd:COG4235   10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPdnADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALY 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 739087447 148 ELARAYFEDNQNKESLALFQNLIN-DETLALPASVKQTIQQ 187
Cdd:COG4235   90 LLGLAAFQQGDYAEAIAAWQKLLAlLPADAPARLLEASIAE 130
 
Name Accession Description Interval E-value
SlipAM pfam04575
Surface lipoprotein assembly modifier; Surface lipoprotein assembly modifier (Slam) is a ...
 198-484 2.13e-45

Surface lipoprotein assembly modifier; Surface lipoprotein assembly modifier (Slam) is a surface lipoprotein that may have a role in virulence. In Neisseria, it is required for the surface display of lipidated virulence factors. Proteins in this family contain an eight-stranded beta-barrel domain.


Pssm-ID: 398328  Cd Length: 288  Bit Score: 160.20  E-value: 2.13e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  198 WTGSLSFGYKYNSNINQVPDKNKVWETPGGTWKMANPKSSPGLTYDASLSKIIPISSNHSLQIKGTSYGDRYPHYAEFSE 277
Cdd:pfam04575   1 WKFNGGFSYIREDNINNAPDKTTYNFIKSGNWTFPKPKKANGLSYDLGAEKKWPLSGGHYLEFRADTYGKSYWDNKKYND 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  278 NTSSLATLYRFNDANTTIAFGPLIELKTVNEKRRYLGMGGKIEADYQFTPRVILSTSADYQQLHYQKpYDSADGNRSSLH 357
Cdd:pfam04575  81 LSTRAGLGYGYKNAKTDVSVLPFYEKRFYGNDRYYRAIGVRLSKNYWLNPNWQLSGALEYERERYTR-RKHLDGNIYLVS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  358 LTGVYGITPDTSLFLGADATRLTTEVRSDDYDQLGIRGGLYTVLTPDIHLLALATYRESQFKA---FNQMLNVKRHDKEA 434
Cdd:pfam04575 160 ASLIYYPNPRRYWFGGGDYSREDVQDKADSYDRKGIRFGWGQEWGGGLSTRLRASAAKRQYKGkalFSGPFNIKRKDKEY 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 739087447  435 MYFARLSFPNYSLLTFTPYTSYRFRDNRSSADgIYSYHQHEISIGLETRF 484
Cdd:pfam04575 240 NVSLSLWHRDIHLWGITPKLTYSYRKNNSNVP-LYSYNKNNVFVEFSKTF 288
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 70-187 1.88e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.70  E-value: 1.88e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  70 LKNNAQDLGQAIYLAINHRQFQDVQRLLPRYQQLTDADP--LLILFAKAETAKAQNHYPEAIAHYQQILALSPKFLRIKL 147
Cdd:COG4235   10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPdnADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALY 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 739087447 148 ELARAYFEDNQNKESLALFQNLIN-DETLALPASVKQTIQQ 187
Cdd:COG4235   90 LLGLAAFQQGDYAEAIAAWQKLLAlLPADAPARLLEASIAE 130
TPR_19 pfam14559
Tetratricopeptide repeat;
122-173 3.83e-05

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 41.42  E-value: 3.83e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 739087447  122 QNHYPEAIAHYQQILALSPKFLRIKLELARAYFEDNQNKESLALFQNLINDE 173
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAAD 52
COG5338 COG5338
Uncharacterized conserved protein [Function unknown];
198-397 7.96e-04

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 444122  Cd Length: 386  Bit Score: 41.53  E-value: 7.96e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447 198 WTGSLSFGYKYNSNINQVPDKNK---VWET-PGGTWKMANPKSSPGLTYDASLSKIIPISS----NHSLQIKGtsygdRY 269
Cdd:COG5338   23 LRPSLELGLGYDDNIFATSTNEVsdaITTVsPGLRLRSDWSRHALTLDARGDYGRYFSSSDenytDHNLGARG-----RL 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447 270 phyaEFSENTS---SLATLYRFNDANTTIAFGPLIELKTVNEKRRYLGmggkIEADyqfTPRVILSTSADYQQLHYQ--- 343
Cdd:COG5338   98 ----DLTRRTRldlSAGYRLGHEDRGSPDAPGGASEPVEYDTLGASLG----VTRD---FGRLRLTLGAGYDRTDYDdae 166

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 739087447 344 ------KPYDSADGNRSSLHLTGVYGITPDTSLFLGADATRLTTEVRSD------DYDQLGIRGGL 397
Cdd:COG5338  167 ladgttLDQSDRDRTEYTGGLRLGYELSPGTALFVEVRGNRRDYDEAPDtggydrDSDGYRARVGV 232
 
Name Accession Description Interval E-value
SlipAM pfam04575
Surface lipoprotein assembly modifier; Surface lipoprotein assembly modifier (Slam) is a ...
 198-484 2.13e-45

Surface lipoprotein assembly modifier; Surface lipoprotein assembly modifier (Slam) is a surface lipoprotein that may have a role in virulence. In Neisseria, it is required for the surface display of lipidated virulence factors. Proteins in this family contain an eight-stranded beta-barrel domain.


Pssm-ID: 398328  Cd Length: 288  Bit Score: 160.20  E-value: 2.13e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  198 WTGSLSFGYKYNSNINQVPDKNKVWETPGGTWKMANPKSSPGLTYDASLSKIIPISSNHSLQIKGTSYGDRYPHYAEFSE 277
Cdd:pfam04575   1 WKFNGGFSYIREDNINNAPDKTTYNFIKSGNWTFPKPKKANGLSYDLGAEKKWPLSGGHYLEFRADTYGKSYWDNKKYND 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  278 NTSSLATLYRFNDANTTIAFGPLIELKTVNEKRRYLGMGGKIEADYQFTPRVILSTSADYQQLHYQKpYDSADGNRSSLH 357
Cdd:pfam04575  81 LSTRAGLGYGYKNAKTDVSVLPFYEKRFYGNDRYYRAIGVRLSKNYWLNPNWQLSGALEYERERYTR-RKHLDGNIYLVS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  358 LTGVYGITPDTSLFLGADATRLTTEVRSDDYDQLGIRGGLYTVLTPDIHLLALATYRESQFKA---FNQMLNVKRHDKEA 434
Cdd:pfam04575 160 ASLIYYPNPRRYWFGGGDYSREDVQDKADSYDRKGIRFGWGQEWGGGLSTRLRASAAKRQYKGkalFSGPFNIKRKDKEY 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 739087447  435 MYFARLSFPNYSLLTFTPYTSYRFRDNRSSADgIYSYHQHEISIGLETRF 484
Cdd:pfam04575 240 NVSLSLWHRDIHLWGITPKLTYSYRKNNSNVP-LYSYNKNNVFVEFSKTF 288
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 70-187 1.88e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.70  E-value: 1.88e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  70 LKNNAQDLGQAIYLAINHRQFQDVQRLLPRYQQLTDADP--LLILFAKAETAKAQNHYPEAIAHYQQILALSPKFLRIKL 147
Cdd:COG4235   10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPdnADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALY 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 739087447 148 ELARAYFEDNQNKESLALFQNLIN-DETLALPASVKQTIQQ 187
Cdd:COG4235   90 LLGLAAFQQGDYAEAIAAWQKLLAlLPADAPARLLEASIAE 130
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 70-179 2.75e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.12  E-value: 2.75e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  70 LKNNAQDLGQAIYLAINHRQFQDVQRLLPRYQQLTDADP--LLILFAKAETAKAQNHYPEAIAHYQQILALSPKFLRIKL 147
Cdd:COG2956  103 LELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPenAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALL 182

                         90       100       110
                 ....*....|....*....|....*....|..
gi 739087447 148 ELARAYFEDNQNKESLALFQNLINDETLALPA 179
Cdd:COG2956  183 LLAELYLEQGDYEEAIAALERALEQDPDYLPA 214
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 74-170 2.83e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.50  E-value: 2.83e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  74 AQDLGQAIYLAINHRQFQDVQRLLPRYQQLTDADP--LLILFAKAETAKAQNHYPEAIAHYQQILALSPKFLRIKLELAR 151
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPdnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90
                 ....*....|....*....
gi 739087447 152 AYFEDNQNKESLALFQNLI 170
Cdd:COG4783   81 ALLKAGDYDEALALLEKAL 99
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 82-170 5.49e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.88  E-value: 5.49e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  82 YLAINHRQFQDVQRLLPRYQQLTDADP--LLILFAKAETAKAQNHYPEAIAHYQQILALSPKFLRIKLELARAYFEDNQN 159
Cdd:COG2956  149 ELAELYLEQGDYDEAIEALEKALKLDPdcARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP 228

                         90
                 ....*....|.
gi 739087447 160 KESLALFQNLI 170
Cdd:COG2956  229 EEALELLRKAL 239
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 30-170 1.30e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 50.76  E-value: 1.30e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  30 QLLWQKDKQNYRDKSAVVPNKDQLLLPDDLSIKLNGENYTLKNNAQDLGQAIYLAINHRQFQDVQRLLPRYQQLTDADPL 109
Cdd:COG3914    1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 739087447 110 LILFAKAetAKAQNHYPEAIAHYQQILALSPKFLRIKLELARAYFEDNQNKESLALFQNLI 170
Cdd:COG3914   81 LELAALL--LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRAL 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 52-171 1.47e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 50.76  E-value: 1.47e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  52 QLLLPDDLSIKLNGENYTLKNNAQDLGQAIYLAIN-HRQFQDVQRLLPRYQQLTDADPLL--ILFAKAETAKAQNHYPEA 128
Cdd:COG3914   52 AEAAAAALLALAAGEAAAAAAALLLLAALLELAALlLQALGRYEEALALYRRALALNPDNaeALFNLGNLLLALGRLEEA 131

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 739087447 129 IAHYQQILALSPKFLRIKLELARAYFEDNQNKESLALFQNLIN 171
Cdd:COG3914  132 LAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALE 174
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 81-193 1.63e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.73  E-value: 1.63e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  81 IYLAINHRQFQDVQRLLPRYQQLTDADP--LLILFAKAETAKAQNHYPEAIAHYQQILALSPKFLRIKLELARAYFEDNQ 158
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEALELDPetVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 739087447 159 NKESLALFQNLI-----NDETLALPASVKQTIQQFIDAIE 193
Cdd:COG2956   92 LDRAEELLEKLLeldpdDAEALRLLAEIYEQEGDWEKAIE 131
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 70-170 4.38e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 4.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  70 LKNNAQDLGQAIYLAINHRQFQDVQRLLPRYQQLTDADP--LLILFAKAETAKAQNHYPEAIAHYQQILALSPKFLRIKL 147
Cdd:COG4783   31 LELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPdePEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYL 110

                         90       100
                 ....*....|....*....|...
gi 739087447 148 ELARAYFEDNQNKESLALFQNLI 170
Cdd:COG4783  111 RLARAYRALGRPDEAIAALEKAL 133
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 82-167 1.11e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.07  E-value: 1.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  82 YLAINHRQFQDVQRLLPRYQQLTDADP--LLILFAKAETAKAQNHYPEAIAHYQQILALSPKFLRIKLELARAYFEDNQN 159
Cdd:COG3914  117 NLGNLLLALGRLEEALAALRRALALNPdfAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRL 196


                 ....*...
gi 739087447 160 KESLALFQ 167
Cdd:COG3914  197 EEAIAAYR 204
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 70-172 1.64e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.65  E-value: 1.64e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  70 LKNNAQDLGQAIYLAINHRQFQDVQRLLPRYQQLTDADP--LLILFAKAETAKAQNHYPEAIAHYQQILALSPKFLRIKL 147
Cdd:COG2956   35 LELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPdrAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALR 114

                         90       100
                 ....*....|....*....|....*
gi 739087447 148 ELARAYFEDNQNKESLALFQNLIND 172
Cdd:COG2956  115 LLAEIYEQEGDWEKAIEVLERLLKL 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
81-170 2.54e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.77  E-value: 2.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  81 IYLAINHRQFQDVQRLLPRYQQLTDADP--LLILFAKAETAKAQNHYPEAIAHYQQILALSPKFLRIKLELARAYFEDNQ 158
Cdd:COG0457   12 NNLGLAYRRLGRYEEAIEDYEKALELDPddAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGR 91

                         90
                 ....*....|..
gi 739087447 159 NKESLALFQNLI 170
Cdd:COG0457   92 YEEALEDYDKAL 103
TPR_19 pfam14559
Tetratricopeptide repeat;
122-173 3.83e-05

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 41.42  E-value: 3.83e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 739087447  122 QNHYPEAIAHYQQILALSPKFLRIKLELARAYFEDNQNKESLALFQNLINDE 173
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAAD 52
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
82-179 4.16e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.00  E-value: 4.16e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  82 YLAINHRQFQDVQRLLPRYQQLTDADP--LLILFAKAETAKAQNHYPEAIAHYQQILALSPKFLRIKLELARAYFEDNQN 159
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPddAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         90       100
                 ....*....|....*....|
gi 739087447 160 KESLALFQNLINDETLALPA 179
Cdd:COG0457  161 EEALELLEKLEAAALAALLA 180
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 88-172 8.19e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.90  E-value: 8.19e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  88 RQFQDVQRLLPRYQQLTDAdplliLFAKAETAKAQNHYPEAIAHYQQILAL---SPKFLRIKLELARAYFEDNQNKESLA 164
Cdd:COG1729   14 AAFKAFLKRYPNSPLAPDA-----LYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLELGDYDKARA 88


                 ....*...
gi 739087447 165 LFQNLIND 172
Cdd:COG1729   89 TLEELIKK 96
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 52-176 9.06e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.03  E-value: 9.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  52 QLLLPDDLSIKLNGENYTLKNNAQDLGQAIYLAINHRQFQDVQRLLPRYQQLTDADPLlILFAKAETAKAQNHYPEAIAH 131
Cdd:COG5010   32 AGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE-LYYNLALLYSRSGDKDEAKEY 110

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 739087447 132 YQQILALSPKFLRIKLELARAYFEDNQNKESLALFQNLINDETLA 176
Cdd:COG5010  111 YEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPLK 155
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
76-170 1.45e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.46  E-value: 1.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  76 DLGQAIY-LAINHRQFQDVQRLLPRYQQLTDADP--LLILFAKAETAKAQNHYPEAIAHYQQILALSPKFLRIKLELARA 152
Cdd:COG0457   40 DDAEALYnLGLAYLRLGRYEEALADYEQALELDPddAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLA 119

                         90
                 ....*....|....*...
gi 739087447 153 YFEDNQNKESLALFQNLI 170
Cdd:COG0457  120 LLELGRYDEAIEAYERAL 137
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
87-177 2.83e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.77  E-value: 2.83e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  87 HRQFQDVQRLLPRYQQLTDADP--LLILFAKAETAKAQNHYPEAIAhYQQILALSPKFLRIKLELARAYFEDNQNKESLA 164
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPdnADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                         90
                 ....*....|...
gi 739087447 165 LFQNLINDETLAL 177
Cdd:COG3063   81 YLERALELDPSAL 93
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 74-170 7.09e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.33  E-value: 7.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447  74 AQDLGQAIYLAINHRQFQDVQRLLPRYQQLTDADPLLILFAKAETAKAQNHYPEAIAHYQQILALSPKFLRIKLELARAY 153
Cdd:COG5010   19 KLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLY 98

                         90
                 ....*....|....*..
gi 739087447 154 FEDNQNKESLALFQNLI 170
Cdd:COG5010   99 SRSGDKDEAKEYYEKAL 115
COG5338 COG5338
Uncharacterized conserved protein [Function unknown];
198-397 7.96e-04

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 444122  Cd Length: 386  Bit Score: 41.53  E-value: 7.96e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447 198 WTGSLSFGYKYNSNINQVPDKNK---VWET-PGGTWKMANPKSSPGLTYDASLSKIIPISS----NHSLQIKGtsygdRY 269
Cdd:COG5338   23 LRPSLELGLGYDDNIFATSTNEVsdaITTVsPGLRLRSDWSRHALTLDARGDYGRYFSSSDenytDHNLGARG-----RL 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087447 270 phyaEFSENTS---SLATLYRFNDANTTIAFGPLIELKTVNEKRRYLGmggkIEADyqfTPRVILSTSADYQQLHYQ--- 343
Cdd:COG5338   98 ----DLTRRTRldlSAGYRLGHEDRGSPDAPGGASEPVEYDTLGASLG----VTRD---FGRLRLTLGAGYDRTDYDdae 166

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 739087447 344 ------KPYDSADGNRSSLHLTGVYGITPDTSLFLGADATRLTTEVRSD------DYDQLGIRGGL 397
Cdd:COG5338  167 ladgttLDQSDRDRTEYTGGLRLGYELSPGTALFVEVRGNRRDYDEAPDtggydrDSDGYRARVGV 232
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
105-170 1.31e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.38  E-value: 1.31e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 739087447 105 DADPLLILFAKAETAKAQNHYPEAIAHYQQILALSPKFLRIKLELARAYFEDNQNKESLALFQNLI 170
Cdd:COG0457    4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQAL 69
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 100-170 4.84e-03

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 38.71  E-value: 4.84e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 739087447 100 YQQLTDADPLLILFAKAETAKAQNHYPEAIAHYQQILAL---SPKFLRIKLELARAYFEDNQNKESLALFQNLI 170
Cdd:COG4105   23 FKKALKSWDAEELYEEAKEALEKGDYEKAIKLFEELEPRypgSPYAEQAQLMLAYAYYKQGDYEEAIAAADRFI 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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