|
Name |
Accession |
Description |
Interval |
E-value |
| DadA |
COG0665 |
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism]; |
8-412 |
1.06e-76 |
|
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
Pssm-ID: 440429 [Multi-domain] Cd Length: 364 Bit Score: 242.12 E-value: 1.06e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 8 RVAVIGAGVIGICTALQLQQAGFAVTLYDENGLAQGCSKGNAGHFATeqvfplaqvallkklpamlfnplgplridwrya 87
Cdd:COG0665 4 DVVVIGGGIAGLSTAYHLARRGLDVTVLERGRPGSGASGRNAGQLRP--------------------------------- 50
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 88 ikALPWFwqfiknmptarfiaHTHALKALNEHAIHAYERLLANYQLGHLLTKQGSL-LTFEKTPLVDVQRTLAMYQAQGI 166
Cdd:COG0665 51 --GLAAL--------------ADRALVRLAREALDLWRELAAELGIDCDFRRTGVLyLARTEAELAALRAEAEALRALGL 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 167 KVKLLDTKQVHALEPSL-SDKIKHALLFEDVAHsIEPHLFCIQLAQKFSLLKGQFRQQ-KVVAITPKSEGF-MVSDEQDS 243
Cdd:COG0665 115 PVELLDAAELREREPGLgSPDYAGGLYDPDDGH-VDPAKLVRALARAARAAGVRIREGtPVTGLEREGGRVtGVRTERGT 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 244 LNFDKVVIAAGAWSASLIEPLGYTAPLDTERGYHCMVNINHGLTRPVASAERSLIMTPMSQG-LRVAGTVEFAGINRKAN 322
Cdd:COG0665 194 VRADAVVLAAGAWSARLLPMLGLRLPLRPVRGYVLVTEPLPDLPLRPVLDDTGVYLRPTADGrLLVGGTAEPAGFDRAPT 273
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 323 NKRALALLPHAQALL-ASQPLSAKTTWMGCRPSLPDSLPIIGQAPNHNNLYFAFGHQHLGLTQGAITSELITDLCLNKAP 401
Cdd:COG0665 274 PERLEALLRRLRRLFpALADAEIVRAWAGLRPMTPDGLPIIGRLPGAPGLYVATGHGGHGVTLAPAAGRLLADLILGGEP 353
|
410
....*....|.
gi 739103264 402 SINLEPYSINR 412
Cdd:COG0665 354 PLDLAPFSPDR 364
|
|
| DAO |
pfam01266 |
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ... |
8-395 |
9.64e-51 |
|
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Pssm-ID: 426168 [Multi-domain] Cd Length: 339 Bit Score: 174.12 E-value: 9.64e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 8 RVAVIGAGVIGICTALQLQQAGFAVTLYD-ENGLAQGCSKGNAGHfateqvfplaqvallkklpamlfnplgplridWRY 86
Cdd:pfam01266 1 DVVVIGGGIVGLSTAYELARRGLSVTLLErGDDPGSGASGRNAGL--------------------------------IHP 48
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 87 AIKALPWFwqfiknmptarfiahthALKALNEHAIHAYERLLANYQLGHLLTKQGSLLTFEKTPLVDVQRTLAMYQAQGI 166
Cdd:pfam01266 49 GLRYLEPS-----------------ELARLALEALDLWEELEEELGIDCGFRRCGVLVLARDEEEEALEKLLAALRRLGV 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 167 KVKLLDTKQVHALEPsLSDKIKHALLFEDVAHsIEPHLFCIQLAQKFSLLKGQFRQQ-KVVAITPKSEGFMVSDEQdslN 245
Cdd:pfam01266 112 PAELLDAEELRELEP-LLPGLRGGLFYPDGGH-VDPARLLRALARAAEALGVRIIEGtEVTGIEEEGGVWGVVTTG---E 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 246 FDKVVIAAGAWSAsLIEPLGYTAPLDTERGYHCMV-----NINHGLTRPVASAERSLIMTPMSQG-LRVAGTVEFAGINR 319
Cdd:pfam01266 187 ADAVVNAAGAWAD-LLALPGLRLPVRPVRGQVLVLeplpeALLILPVPITVDPGRGVYLRPRADGrLLLGGTDEEDGFDD 265
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 739103264 320 KANNKRALA-LLPHAQALLAsQPLSAKTTWMGCRPsLPDSLPIIGQaPNHNNLYFAFGHQHLGLTQGAITSELITDL 395
Cdd:pfam01266 266 PTPDPEEIEeLLEAARRLFP-ALADIERAWAGLRP-LPDGLPIIGR-PGSPGLYLATGHGGHGLTLAPGIGKLLAEL 339
|
|
| PRK00711 |
PRK00711 |
D-amino acid dehydrogenase; |
8-413 |
2.68e-41 |
|
D-amino acid dehydrogenase;
Pssm-ID: 234819 [Multi-domain] Cd Length: 416 Bit Score: 150.72 E-value: 2.68e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 8 RVAVIGAGVIGICTALQLQQAGFAVTLYD-ENGLAQGCSKGNAGHFATEQVFPLAQVALLKKLPAMLFNPLGPLRIDWRY 86
Cdd:PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDrQPGPALETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRPDG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 87 AIKALPWFWQFIKNMPTARFIAHTHALKALNEHAIHAYERLLANYQLGHLLTKQGSLLTFEKTPLVDVQRTLAMYQAQ-G 165
Cdd:PRK00711 82 DPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRAETGIQYEGRQGGTLQLFRTQQQLDAAAKDIAVLEEaG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 166 IKVKLLDTKQVHALEPSL---SDKIKHALLF--EDVAhsiEPHLFCIQLAQKFSLLKGQFRQ----QKVVAITPKSEGFM 236
Cdd:PRK00711 162 VPYELLDRDELAAVEPALagvRHKLVGGLRLpnDETG---DCQLFTQRLAAMAEQLGVKFRFntpvDGLLVEGGRITGVQ 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 237 VSDEQdsLNFDKVVIAAGAWSASLIEPLGYTAPLDTERGYhcmvninhGLTRPVASAERS-----------LIMTPMSQG 305
Cdd:PRK00711 239 TGGGV--ITADAYVVALGSYSTALLKPLGVDIPVYPLKGY--------SLTVPITDEDRApvstvldetykIAITRFDDR 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 306 LRVAGTVEFAGINRKANNKRAlALLPH-AQALL-ASQPLSAKTTWMGCRPSLPDSLPIIGQAPnHNNLYFAFGHQHLGLT 383
Cdd:PRK00711 309 IRVGGMAEIVGFDLRLDPARR-ETLEMvVRDLFpGGGDLSQATFWTGLRPMTPDGTPIVGATR-YKNLWLNTGHGTLGWT 386
|
410 420 430
....*....|....*....|....*....|
gi 739103264 384 QGAITSELITDLCLNKAPSINLEPYSINRF 413
Cdd:PRK00711 387 MACGSGQLLADLISGRKPAIDADDLSVARY 416
|
|
| PRK12409 |
PRK12409 |
D-amino acid dehydrogenase small subunit; Provisional |
7-401 |
1.21e-29 |
|
D-amino acid dehydrogenase small subunit; Provisional
Pssm-ID: 237093 [Multi-domain] Cd Length: 410 Bit Score: 118.97 E-value: 1.21e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 7 QRVAVIGAGVIGICTALQLQQAGFAVTLYD-------ENGLAQG--CSKGNA---GHFATeqvfplaqvaLLKKLPAMLf 74
Cdd:PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDrhryaamETSFANGgqLSASNAevwNHWAT----------VLKGLKWML- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 75 NPLGPLRIDWRYAIKALPWFWQFIKNMPTARfiAHTHALKALnehAIHAYERLLA---NYQLGHLLTKQGSLLTF-EKTP 150
Cdd:PRK12409 71 RKDAPLLLNPKPSWHKYSWLAEFLAHIPNYR--ANTIETVRL---AIAARKHLFDiaeREGIDFDLERRGILHIYhDKAG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 151 LVDVQRTLAMYQAQGIKVKLLDTKQVHALEPSLSDKIkHALLFEDVAHSIEPHLFCIQLAQKFSLLKGQFRQ-QKVVAIT 229
Cdd:PRK12409 146 FDHAKRVNALLAEGGLERRAVTPEEMRAIEPTLTGEY-YGGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYgQEVTSIK 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 230 PKSEGFMV----SDEQDS--LNFDKVVIAAGAWSASLIEPLGYTAPLDTERGYHCMVNINHGLTR---PVASA--ERSLI 298
Cdd:PRK12409 225 TDGGGVVLtvqpSAEHPSrtLEFDGVVVCAGVGSRALAAMLGDRVNVYPVKGYSITVNLDDEASRaaaPWVSLldDSAKI 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 299 MTPM--SQGLRVAGTVEFAGINRKANNKRALALLPHAQALLASQPLSAKTTWMGCRPSLPDSLPIIGQApNHNNLYFAFG 376
Cdd:PRK12409 305 VTSRlgADRFRVAGTAEFNGYNRDIRADRIRPLVDWVRRNFPDVSTRRVVPWAGLRPMMPNMMPRVGRG-RRPGVFYNTG 383
|
410 420
....*....|....*....|....*
gi 739103264 377 HQHLGLTQGAITSELITDLCLNKAP 401
Cdd:PRK12409 384 HGHLGWTLSAATADLVAQVVAQKLP 408
|
|
| LhgO |
COG0579 |
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism]; |
3-266 |
1.80e-13 |
|
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
Pssm-ID: 440344 [Multi-domain] Cd Length: 418 Bit Score: 71.33 E-value: 1.80e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 3 NTRTQRVAVIGAGVIGICTALQLQQA-GFAVTLYD-ENGLAQGCSKGNAG--HFAteqvfplaqvallkklpamlFN-PL 77
Cdd:COG0579 1 MMEMYDVVIIGAGIVGLALARELSRYeDLKVLVLEkEDDVAQESSGNNSGviHAG--------------------LYyTP 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 78 GPLRIdwRYAIKALPWFWQFIKnmptarfiahthalkalnehaihayERLLANYQLGHLltkqgsLLTFEKTplvDVQRt 157
Cdd:COG0579 61 GSLKA--RLCVEGNELFYELCR-------------------------ELGIPFKRCGKL------VVATGEE---EVAF- 103
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 158 LAMYQAQGIK-----VKLLDTKQVHALEPSLSDKIKHALLFEDvAHSIEPHLFCIQLAQKFSLLKGQFR-QQKVVAITPK 231
Cdd:COG0579 104 LEKLYERGKAngvpgLEILDREELRELEPLLSDEGVAALYSPS-TGIVDPGALTRALAENAEANGVELLlNTEVTGIERE 182
|
250 260 270
....*....|....*....|....*....|....*
gi 739103264 232 SEGFMVSDEQDSLNFDKVVIAAGAWSASLIEPLGY 266
Cdd:COG0579 183 GDGWEVTTNGGTIRARFVINAAGLYADRLAQMAGI 217
|
|
| MnmC_Cterm |
TIGR03197 |
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain; In ... |
21-392 |
9.61e-09 |
|
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain; In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 274478 [Multi-domain] Cd Length: 381 Bit Score: 56.89 E-value: 9.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 21 TALQLQQAGFAVTLYDE-NGLAQGCSkGNaghfateqvfplaqvallkklPAMLFNPLgplridwryaikalpwfwqfik 99
Cdd:TIGR03197 1 TAYSLARRGWQVTLYEQdEAPAQGAS-GN---------------------PQGALYPL---------------------- 36
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 100 nmPTARFIAHTHALKALNEHAIHAYERLLanyqlghlltKQGSLLTFEKTPLV-------DVQRTLAMYQAQGIKVKLLD 172
Cdd:TIGR03197 37 --LSADDNPLSRFFLAAFLYARRFYRQLA----------EAGFPFDHEWCGVLqlaydekEAERLQKLLEQLGFPEELAR 104
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 173 TKQVHALEPSLSDKIKHALLFEDVAHSIEPHLFCIQLAQKFSLLKGQFRQQKVVAITPKSEGFMVSDEQ-DSLNFDKVVI 251
Cdd:TIGR03197 105 WVDAEQASQLAGIPLPYGGLFFPQGGWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANgEVIAASVVVL 184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 252 AAGaWSASLIEPLGYtAPLDTERGyhcmvNINHGLTRPVASAERSLI-----MTPMSQGLRVAG-TVEFAGINR------ 319
Cdd:TIGR03197 185 ANG-AQAPQLAQTAH-LPLRPVRG-----QVSHLPATEALSALKTVLcydgyLTPANNGEHCIGaSYDRNDDDLalread 257
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 320 -KANNKRALALLPhAQALLASQPLSAKTTWMGCRPSLPDSLPIIGQAPN-------------------------HNNLYF 373
Cdd:TIGR03197 258 hAENLERLAECLP-ALAWASEVDISALQGRVGVRCASPDHLPLVGAVPDfeaikeayaelakdknrpiaepapyYPGLYV 336
|
410
....*....|....*....
gi 739103264 374 AFGHQHLGLTQGAITSELI 392
Cdd:TIGR03197 337 LGGLGSRGLTSAPLAAEIL 355
|
|
| mnmC |
PRK01747 |
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ... |
2-395 |
1.98e-07 |
|
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;
Pssm-ID: 234978 [Multi-domain] Cd Length: 662 Bit Score: 53.31 E-value: 1.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 2 TNTRTQRVAVIGAGVIGICTALQLQQAGFAVTLYDE-NGLAQGCSkGN-AGHFateqvFPLaqvaLLKKLPAMlfnplgp 79
Cdd:PRK01747 256 GSPKARDAAIIGGGIAGAALALALARRGWQVTLYEAdEAPAQGAS-GNrQGAL-----YPL----LSKDDNAL------- 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 80 lridwryaikalpwfwqfiknmptARFIAH--THALKAL--NEHAIHAYERLLAN-YQLGHlltkqgSLLTFEKtplvdv 154
Cdd:PRK01747 319 ------------------------SRFFRAafLFARRFYdaLPAAGVAFDHDWCGvLQLAW------DEKSAEK------ 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 155 QRTLAMYQAQGIKVKLLDTKQVHALepSLSDKIKHALLFEDvAHSIEPHLFCiqlAQKFSLLKGQFR---QQKVVAITPK 231
Cdd:PRK01747 363 IAKMLALGLPAELARALDAEEAEEL--AGLPVPCGGIFYPQ-GGWLCPAELC---RALLALAGQQLTihfGHEVARLERE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 232 SEGFMVSDEQDSLNFDKVVIAAGAWSASLIEPLgYTAPLDTERGyhcmvNINHGLTRPVASAERSLI-----MTPMSQ-G 305
Cdd:PRK01747 437 DDGWQLDFAGGTLASAPVVVLANGHDAARFAQT-AHLPLYSVRG-----QVSHLPTTPALSALKQVLcydgyLTPQPAnG 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 306 LRVAG-TVEFAGINR-------KANNKRALALLPhAQALLASQPLSAKTTWMGCRPSLPDSLPIIGQ------------- 364
Cdd:PRK01747 511 THCIGaSYDRDDTDTafreadhQENLERLAECLP-QALWAKEVDVSALQGRVGFRCASRDRLPMVGNvpdeaatlaeyaa 589
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 739103264 365 ---------APNHNNLYFAFGHQHLGLTQGAITSELITDL 395
Cdd:PRK01747 590 lanqqpardAPRLPGLYVAGALGSRGLCSAPLGAELLASQ 629
|
|
| YobN |
COG1231 |
Monoamine oxidase [Amino acid transport and metabolism]; |
1-35 |
1.80e-04 |
|
Monoamine oxidase [Amino acid transport and metabolism];
Pssm-ID: 440844 [Multi-domain] Cd Length: 440 Bit Score: 43.37 E-value: 1.80e-04
10 20 30
....*....|....*....|....*....|....*.
gi 739103264 1 MTNTRTQ-RVAVIGAGVIGICTALQLQQAGFAVTLY 35
Cdd:COG1231 1 MSRRARGkDVVIVGAGLAGLAAARELRKAGLDVTVL 36
|
|
| CzcO |
COG2072 |
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ... |
8-39 |
2.82e-04 |
|
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];
Pssm-ID: 441675 [Multi-domain] Cd Length: 414 Bit Score: 42.93 E-value: 2.82e-04
10 20 30
....*....|....*....|....*....|..
gi 739103264 8 RVAVIGAGVIGICTALQLQQAGFAVTLYDENG 39
Cdd:COG2072 8 DVVVIGAGQAGLAAAYHLRRAGIDFVVLEKAD 39
|
|
| UbiH |
COG0654 |
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ... |
4-36 |
3.34e-04 |
|
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 440419 [Multi-domain] Cd Length: 326 Bit Score: 42.23 E-value: 3.34e-04
10 20 30
....*....|....*....|....*....|...
gi 739103264 4 TRTQRVAVIGAGVIGICTALQLQQAGFAVTLYD 36
Cdd:COG0654 1 MMRTDVLIVGGGPAGLALALALARAGIRVTVVE 33
|
|
| FadB |
COG1250 |
3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]; 3-hydroxyacyl-CoA ... |
7-43 |
4.78e-04 |
|
3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]; 3-hydroxyacyl-CoA dehydrogenase is part of the Pathway/BioSystem: Fatty acid biosynthesis
Pssm-ID: 440862 [Multi-domain] Cd Length: 281 Bit Score: 41.63 E-value: 4.78e-04
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 739103264 7 QRVAVIGAGVIG--IctALQLQQAGFAVTLYD--ENGLAQG 43
Cdd:COG1250 3 KKVAVIGAGTMGagI--AAVFANAGYEVVLLDisPEALERA 41
|
|
| GltD |
COG0493 |
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ... |
7-36 |
8.51e-04 |
|
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis
Pssm-ID: 440259 [Multi-domain] Cd Length: 434 Bit Score: 41.27 E-value: 8.51e-04
10 20 30
....*....|....*....|....*....|
gi 739103264 7 QRVAVIGAGVIGICTALQLQQAGFAVTLYD 36
Cdd:COG0493 122 KKVAVVGSGPAGLAAAYQLARAGHEVTVFE 151
|
|
| PRK06847 |
PRK06847 |
hypothetical protein; Provisional |
3-34 |
9.70e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 235874 [Multi-domain] Cd Length: 375 Bit Score: 41.01 E-value: 9.70e-04
10 20 30
....*....|....*....|....*....|..
gi 739103264 3 NTRTQRVAVIGAGVIGICTALQLQQAGFAVTL 34
Cdd:PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDL 32
|
|
| COG1233 |
COG1233 |
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ... |
4-44 |
1.07e-03 |
|
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 440846 [Multi-domain] Cd Length: 491 Bit Score: 40.99 E-value: 1.07e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 739103264 4 TRTQRVAVIGAGVIGICTALQLQQAGFAVTLYDENGLAQGC 44
Cdd:COG1233 1 MMMYDVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTPGGR 41
|
|
| HemY |
COG1232 |
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ... |
7-36 |
1.16e-03 |
|
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis
Pssm-ID: 440845 [Multi-domain] Cd Length: 443 Bit Score: 40.97 E-value: 1.16e-03
10 20 30
....*....|....*....|....*....|
gi 739103264 7 QRVAVIGAGVIGICTALQLQQAGFAVTLYD 36
Cdd:COG1232 2 KRVAVIGGGIAGLTAAYRLAKAGHEVTVLE 31
|
|
| gltD |
PRK12810 |
glutamate synthase subunit beta; Reviewed |
4-36 |
1.37e-03 |
|
glutamate synthase subunit beta; Reviewed
Pssm-ID: 237213 [Multi-domain] Cd Length: 471 Bit Score: 40.92 E-value: 1.37e-03
10 20 30
....*....|....*....|....*....|....
gi 739103264 4 TRT-QRVAVIGAGVIGICTALQLQQAGFAVTLYD 36
Cdd:PRK12810 140 KRTgKKVAVVGSGPAGLAAADQLARAGHKVTVFE 173
|
|
| COG3349 |
COG3349 |
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ... |
5-36 |
1.39e-03 |
|
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];
Pssm-ID: 442577 [Multi-domain] Cd Length: 445 Bit Score: 40.61 E-value: 1.39e-03
10 20 30
....*....|....*....|....*....|..
gi 739103264 5 RTQRVAVIGAGVIGICTALQLQQAGFAVTLYD 36
Cdd:COG3349 2 MPPRVVVVGGGLAGLAAAVELAEAGFRVTLLE 33
|
|
| PRK12771 |
PRK12771 |
putative glutamate synthase (NADPH) small subunit; Provisional |
8-43 |
1.58e-03 |
|
putative glutamate synthase (NADPH) small subunit; Provisional
Pssm-ID: 237198 [Multi-domain] Cd Length: 564 Bit Score: 40.63 E-value: 1.58e-03
10 20 30
....*....|....*....|....*....|....*.
gi 739103264 8 RVAVIGAGVIGICTALQLQQAGFAVTLYDENGLAQG 43
Cdd:PRK12771 139 RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174
|
|
| soxA_mon |
TIGR01377 |
sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of ... |
129-274 |
1.66e-03 |
|
sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]
Pssm-ID: 130444 [Multi-domain] Cd Length: 380 Bit Score: 40.20 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 129 ANYQLgHLLTKQGSLLTFEKTPLVDVQRTLamyQAQGIKVKLLDTKQVHALEPSLSDKIKHALLFEDVAHSIEPHLfCIQ 208
Cdd:TIGR01377 75 AGTKL-HRQTGLLLLGPKENQFLKTIQATL---SRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEK-ALR 149
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 739103264 209 LAQKFSL-LKGQFRQ-QKVVAITPKSEGFMVSDEQDSLNFDKVVIAAGAWSASLIEPLGYTAPLDTER 274
Cdd:TIGR01377 150 ALQELAEaHGATVRDgTKVVEIEPTELLVTVKTTKGSYQANKLVVTAGAWTSKLLSPLGIEIPLQPLR 217
|
|
| PRK07538 |
PRK07538 |
hypothetical protein; Provisional |
8-36 |
2.14e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 236046 [Multi-domain] Cd Length: 413 Bit Score: 39.88 E-value: 2.14e-03
10 20
....*....|....*....|....*....
gi 739103264 8 RVAVIGAGVIGICTALQLQQAGFAVTLYD 36
Cdd:PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFE 30
|
|
| HdrA |
COG1148 |
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion]; |
6-34 |
3.03e-03 |
|
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
Pssm-ID: 440762 [Multi-domain] Cd Length: 563 Bit Score: 39.84 E-value: 3.03e-03
10 20
....*....|....*....|....*....
gi 739103264 6 TQRVAVIGAGVIGICTALQLQQAGFAVTL 34
Cdd:COG1148 140 NKRALVIGGGIAGMTAALELAEQGYEVYL 168
|
|
| PRK07233 |
PRK07233 |
hypothetical protein; Provisional |
8-45 |
4.53e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 235977 [Multi-domain] Cd Length: 434 Bit Score: 39.10 E-value: 4.53e-03
10 20 30
....*....|....*....|....*....|....*...
gi 739103264 8 RVAVIGAGVIGICTALQLQQAGFAVTLYDENGLAQGCS 45
Cdd:PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38
|
|
| 3HCDH_N |
pfam02737 |
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; This family also includes lambda ... |
8-38 |
4.92e-03 |
|
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; This family also includes lambda crystallin.
Pssm-ID: 397037 [Multi-domain] Cd Length: 180 Bit Score: 37.90 E-value: 4.92e-03
10 20 30
....*....|....*....|....*....|.
gi 739103264 8 RVAVIGAGVIGICTALQLQQAGFAVTLYDEN 38
Cdd:pfam02737 1 KVAVIGAGTMGAGIAQVFALAGLEVVLVDIS 31
|
|
| PRK11749 |
PRK11749 |
dihydropyrimidine dehydrogenase subunit A; Provisional |
7-36 |
5.49e-03 |
|
dihydropyrimidine dehydrogenase subunit A; Provisional
Pssm-ID: 236967 [Multi-domain] Cd Length: 457 Bit Score: 39.01 E-value: 5.49e-03
10 20 30
....*....|....*....|....*....|
gi 739103264 7 QRVAVIGAGVIGICTALQLQQAGFAVTLYD 36
Cdd:PRK11749 141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFE 170
|
|
| Pyr_redox_2 |
pfam07992 |
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ... |
8-68 |
5.65e-03 |
|
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Pssm-ID: 400379 [Multi-domain] Cd Length: 301 Bit Score: 38.45 E-value: 5.65e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 739103264 8 RVAVIGAGVIGICTALQLQQAGFAVTLYDENG--LAQGC--SKG--NAGHFAtEQVFPLAQVALLKK 68
Cdd:pfam07992 2 DVVVIGGGPAGLAAALTLAQLGGKVTLIEDEGtcPYGGCvlSKAllGAAEAP-EIASLWADLYKRKE 67
|
|
| NirB |
COG1251 |
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion]; |
7-34 |
6.73e-03 |
|
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
Pssm-ID: 440863 [Multi-domain] Cd Length: 402 Bit Score: 38.58 E-value: 6.73e-03
10 20
....*....|....*....|....*...
gi 739103264 7 QRVAVIGAGVIGICTALQLQQAGFAVTL 34
Cdd:COG1251 143 KRVVVIGGGLIGLEAAAALRKRGLEVTV 170
|
|
| PRK04965 |
PRK04965 |
NADH:flavorubredoxin reductase NorW; |
7-38 |
8.87e-03 |
|
NADH:flavorubredoxin reductase NorW;
Pssm-ID: 179902 [Multi-domain] Cd Length: 377 Bit Score: 37.97 E-value: 8.87e-03
10 20 30
....*....|....*....|....*....|..
gi 739103264 7 QRVAVIGAGVIGICTALQLQQAGFAVTLYDEN 38
Cdd:PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNA 173
|
|
|