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Conserved domains on  [gi|739103264|ref|WP_036973849|]
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MULTISPECIES: FAD-binding oxidoreductase [Pseudoalteromonas]

Protein Classification

NAD(P)/FAD-dependent oxidoreductase( domain architecture ID 11429741)

FAD/NAD(P)-binding oxidoreductase that catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant

CATH:  3.30.9.10
EC:  1.-.-.-
Gene Ontology:  GO:0016491|GO:0050660
SCOP:  3000055

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
8-412 1.06e-76

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


:

Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 242.12  E-value: 1.06e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264   8 RVAVIGAGVIGICTALQLQQAGFAVTLYDENGLAQGCSKGNAGHFATeqvfplaqvallkklpamlfnplgplridwrya 87
Cdd:COG0665    4 DVVVIGGGIAGLSTAYHLARRGLDVTVLERGRPGSGASGRNAGQLRP--------------------------------- 50
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  88 ikALPWFwqfiknmptarfiaHTHALKALNEHAIHAYERLLANYQLGHLLTKQGSL-LTFEKTPLVDVQRTLAMYQAQGI 166
Cdd:COG0665   51 --GLAAL--------------ADRALVRLAREALDLWRELAAELGIDCDFRRTGVLyLARTEAELAALRAEAEALRALGL 114
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 167 KVKLLDTKQVHALEPSL-SDKIKHALLFEDVAHsIEPHLFCIQLAQKFSLLKGQFRQQ-KVVAITPKSEGF-MVSDEQDS 243
Cdd:COG0665  115 PVELLDAAELREREPGLgSPDYAGGLYDPDDGH-VDPAKLVRALARAARAAGVRIREGtPVTGLEREGGRVtGVRTERGT 193
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 244 LNFDKVVIAAGAWSASLIEPLGYTAPLDTERGYHCMVNINHGLTRPVASAERSLIMTPMSQG-LRVAGTVEFAGINRKAN 322
Cdd:COG0665  194 VRADAVVLAAGAWSARLLPMLGLRLPLRPVRGYVLVTEPLPDLPLRPVLDDTGVYLRPTADGrLLVGGTAEPAGFDRAPT 273
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 323 NKRALALLPHAQALL-ASQPLSAKTTWMGCRPSLPDSLPIIGQAPNHNNLYFAFGHQHLGLTQGAITSELITDLCLNKAP 401
Cdd:COG0665  274 PERLEALLRRLRRLFpALADAEIVRAWAGLRPMTPDGLPIIGRLPGAPGLYVATGHGGHGVTLAPAAGRLLADLILGGEP 353
                        410
                 ....*....|.
gi 739103264 402 SINLEPYSINR 412
Cdd:COG0665  354 PLDLAPFSPDR 364
 
Name Accession Description Interval E-value
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
8-412 1.06e-76

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 242.12  E-value: 1.06e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264   8 RVAVIGAGVIGICTALQLQQAGFAVTLYDENGLAQGCSKGNAGHFATeqvfplaqvallkklpamlfnplgplridwrya 87
Cdd:COG0665    4 DVVVIGGGIAGLSTAYHLARRGLDVTVLERGRPGSGASGRNAGQLRP--------------------------------- 50
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  88 ikALPWFwqfiknmptarfiaHTHALKALNEHAIHAYERLLANYQLGHLLTKQGSL-LTFEKTPLVDVQRTLAMYQAQGI 166
Cdd:COG0665   51 --GLAAL--------------ADRALVRLAREALDLWRELAAELGIDCDFRRTGVLyLARTEAELAALRAEAEALRALGL 114
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 167 KVKLLDTKQVHALEPSL-SDKIKHALLFEDVAHsIEPHLFCIQLAQKFSLLKGQFRQQ-KVVAITPKSEGF-MVSDEQDS 243
Cdd:COG0665  115 PVELLDAAELREREPGLgSPDYAGGLYDPDDGH-VDPAKLVRALARAARAAGVRIREGtPVTGLEREGGRVtGVRTERGT 193
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 244 LNFDKVVIAAGAWSASLIEPLGYTAPLDTERGYHCMVNINHGLTRPVASAERSLIMTPMSQG-LRVAGTVEFAGINRKAN 322
Cdd:COG0665  194 VRADAVVLAAGAWSARLLPMLGLRLPLRPVRGYVLVTEPLPDLPLRPVLDDTGVYLRPTADGrLLVGGTAEPAGFDRAPT 273
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 323 NKRALALLPHAQALL-ASQPLSAKTTWMGCRPSLPDSLPIIGQAPNHNNLYFAFGHQHLGLTQGAITSELITDLCLNKAP 401
Cdd:COG0665  274 PERLEALLRRLRRLFpALADAEIVRAWAGLRPMTPDGLPIIGRLPGAPGLYVATGHGGHGVTLAPAAGRLLADLILGGEP 353
                        410
                 ....*....|.
gi 739103264 402 SINLEPYSINR 412
Cdd:COG0665  354 PLDLAPFSPDR 364
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
8-395 9.64e-51

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 174.12  E-value: 9.64e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264    8 RVAVIGAGVIGICTALQLQQAGFAVTLYD-ENGLAQGCSKGNAGHfateqvfplaqvallkklpamlfnplgplridWRY 86
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLErGDDPGSGASGRNAGL--------------------------------IHP 48
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264   87 AIKALPWFwqfiknmptarfiahthALKALNEHAIHAYERLLANYQLGHLLTKQGSLLTFEKTPLVDVQRTLAMYQAQGI 166
Cdd:pfam01266  49 GLRYLEPS-----------------ELARLALEALDLWEELEEELGIDCGFRRCGVLVLARDEEEEALEKLLAALRRLGV 111
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  167 KVKLLDTKQVHALEPsLSDKIKHALLFEDVAHsIEPHLFCIQLAQKFSLLKGQFRQQ-KVVAITPKSEGFMVSDEQdslN 245
Cdd:pfam01266 112 PAELLDAEELRELEP-LLPGLRGGLFYPDGGH-VDPARLLRALARAAEALGVRIIEGtEVTGIEEEGGVWGVVTTG---E 186
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  246 FDKVVIAAGAWSAsLIEPLGYTAPLDTERGYHCMV-----NINHGLTRPVASAERSLIMTPMSQG-LRVAGTVEFAGINR 319
Cdd:pfam01266 187 ADAVVNAAGAWAD-LLALPGLRLPVRPVRGQVLVLeplpeALLILPVPITVDPGRGVYLRPRADGrLLLGGTDEEDGFDD 265
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 739103264  320 KANNKRALA-LLPHAQALLAsQPLSAKTTWMGCRPsLPDSLPIIGQaPNHNNLYFAFGHQHLGLTQGAITSELITDL 395
Cdd:pfam01266 266 PTPDPEEIEeLLEAARRLFP-ALADIERAWAGLRP-LPDGLPIIGR-PGSPGLYLATGHGGHGLTLAPGIGKLLAEL 339
PRK00711 PRK00711
D-amino acid dehydrogenase;
8-413 2.68e-41

D-amino acid dehydrogenase;


Pssm-ID: 234819 [Multi-domain]  Cd Length: 416  Bit Score: 150.72  E-value: 2.68e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264   8 RVAVIGAGVIGICTALQLQQAGFAVTLYD-ENGLAQGCSKGNAGHFATEQVFPLAQVALLKKLPAMLFNPLGPLRIDWRY 86
Cdd:PRK00711   2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDrQPGPALETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRPDG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  87 AIKALPWFWQFIKNMPTARFIAHTHALKALNEHAIHAYERLLANYQLGHLLTKQGSLLTFEKTPLVDVQRTLAMYQAQ-G 165
Cdd:PRK00711  82 DPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRAETGIQYEGRQGGTLQLFRTQQQLDAAAKDIAVLEEaG 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 166 IKVKLLDTKQVHALEPSL---SDKIKHALLF--EDVAhsiEPHLFCIQLAQKFSLLKGQFRQ----QKVVAITPKSEGFM 236
Cdd:PRK00711 162 VPYELLDRDELAAVEPALagvRHKLVGGLRLpnDETG---DCQLFTQRLAAMAEQLGVKFRFntpvDGLLVEGGRITGVQ 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 237 VSDEQdsLNFDKVVIAAGAWSASLIEPLGYTAPLDTERGYhcmvninhGLTRPVASAERS-----------LIMTPMSQG 305
Cdd:PRK00711 239 TGGGV--ITADAYVVALGSYSTALLKPLGVDIPVYPLKGY--------SLTVPITDEDRApvstvldetykIAITRFDDR 308
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 306 LRVAGTVEFAGINRKANNKRAlALLPH-AQALL-ASQPLSAKTTWMGCRPSLPDSLPIIGQAPnHNNLYFAFGHQHLGLT 383
Cdd:PRK00711 309 IRVGGMAEIVGFDLRLDPARR-ETLEMvVRDLFpGGGDLSQATFWTGLRPMTPDGTPIVGATR-YKNLWLNTGHGTLGWT 386
                        410       420       430
                 ....*....|....*....|....*....|
gi 739103264 384 QGAITSELITDLCLNKAPSINLEPYSINRF 413
Cdd:PRK00711 387 MACGSGQLLADLISGRKPAIDADDLSVARY 416
MnmC_Cterm TIGR03197
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain; In ...
21-392 9.61e-09

tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain; In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 274478 [Multi-domain]  Cd Length: 381  Bit Score: 56.89  E-value: 9.61e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264   21 TALQLQQAGFAVTLYDE-NGLAQGCSkGNaghfateqvfplaqvallkklPAMLFNPLgplridwryaikalpwfwqfik 99
Cdd:TIGR03197   1 TAYSLARRGWQVTLYEQdEAPAQGAS-GN---------------------PQGALYPL---------------------- 36
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  100 nmPTARFIAHTHALKALNEHAIHAYERLLanyqlghlltKQGSLLTFEKTPLV-------DVQRTLAMYQAQGIKVKLLD 172
Cdd:TIGR03197  37 --LSADDNPLSRFFLAAFLYARRFYRQLA----------EAGFPFDHEWCGVLqlaydekEAERLQKLLEQLGFPEELAR 104
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  173 TKQVHALEPSLSDKIKHALLFEDVAHSIEPHLFCIQLAQKFSLLKGQFRQQKVVAITPKSEGFMVSDEQ-DSLNFDKVVI 251
Cdd:TIGR03197 105 WVDAEQASQLAGIPLPYGGLFFPQGGWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANgEVIAASVVVL 184
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  252 AAGaWSASLIEPLGYtAPLDTERGyhcmvNINHGLTRPVASAERSLI-----MTPMSQGLRVAG-TVEFAGINR------ 319
Cdd:TIGR03197 185 ANG-AQAPQLAQTAH-LPLRPVRG-----QVSHLPATEALSALKTVLcydgyLTPANNGEHCIGaSYDRNDDDLalread 257
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  320 -KANNKRALALLPhAQALLASQPLSAKTTWMGCRPSLPDSLPIIGQAPN-------------------------HNNLYF 373
Cdd:TIGR03197 258 hAENLERLAECLP-ALAWASEVDISALQGRVGVRCASPDHLPLVGAVPDfeaikeayaelakdknrpiaepapyYPGLYV 336
                         410
                  ....*....|....*....
gi 739103264  374 AFGHQHLGLTQGAITSELI 392
Cdd:TIGR03197 337 LGGLGSRGLTSAPLAAEIL 355
 
Name Accession Description Interval E-value
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
8-412 1.06e-76

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 242.12  E-value: 1.06e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264   8 RVAVIGAGVIGICTALQLQQAGFAVTLYDENGLAQGCSKGNAGHFATeqvfplaqvallkklpamlfnplgplridwrya 87
Cdd:COG0665    4 DVVVIGGGIAGLSTAYHLARRGLDVTVLERGRPGSGASGRNAGQLRP--------------------------------- 50
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  88 ikALPWFwqfiknmptarfiaHTHALKALNEHAIHAYERLLANYQLGHLLTKQGSL-LTFEKTPLVDVQRTLAMYQAQGI 166
Cdd:COG0665   51 --GLAAL--------------ADRALVRLAREALDLWRELAAELGIDCDFRRTGVLyLARTEAELAALRAEAEALRALGL 114
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 167 KVKLLDTKQVHALEPSL-SDKIKHALLFEDVAHsIEPHLFCIQLAQKFSLLKGQFRQQ-KVVAITPKSEGF-MVSDEQDS 243
Cdd:COG0665  115 PVELLDAAELREREPGLgSPDYAGGLYDPDDGH-VDPAKLVRALARAARAAGVRIREGtPVTGLEREGGRVtGVRTERGT 193
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 244 LNFDKVVIAAGAWSASLIEPLGYTAPLDTERGYHCMVNINHGLTRPVASAERSLIMTPMSQG-LRVAGTVEFAGINRKAN 322
Cdd:COG0665  194 VRADAVVLAAGAWSARLLPMLGLRLPLRPVRGYVLVTEPLPDLPLRPVLDDTGVYLRPTADGrLLVGGTAEPAGFDRAPT 273
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 323 NKRALALLPHAQALL-ASQPLSAKTTWMGCRPSLPDSLPIIGQAPNHNNLYFAFGHQHLGLTQGAITSELITDLCLNKAP 401
Cdd:COG0665  274 PERLEALLRRLRRLFpALADAEIVRAWAGLRPMTPDGLPIIGRLPGAPGLYVATGHGGHGVTLAPAAGRLLADLILGGEP 353
                        410
                 ....*....|.
gi 739103264 402 SINLEPYSINR 412
Cdd:COG0665  354 PLDLAPFSPDR 364
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
8-395 9.64e-51

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 174.12  E-value: 9.64e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264    8 RVAVIGAGVIGICTALQLQQAGFAVTLYD-ENGLAQGCSKGNAGHfateqvfplaqvallkklpamlfnplgplridWRY 86
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLErGDDPGSGASGRNAGL--------------------------------IHP 48
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264   87 AIKALPWFwqfiknmptarfiahthALKALNEHAIHAYERLLANYQLGHLLTKQGSLLTFEKTPLVDVQRTLAMYQAQGI 166
Cdd:pfam01266  49 GLRYLEPS-----------------ELARLALEALDLWEELEEELGIDCGFRRCGVLVLARDEEEEALEKLLAALRRLGV 111
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  167 KVKLLDTKQVHALEPsLSDKIKHALLFEDVAHsIEPHLFCIQLAQKFSLLKGQFRQQ-KVVAITPKSEGFMVSDEQdslN 245
Cdd:pfam01266 112 PAELLDAEELRELEP-LLPGLRGGLFYPDGGH-VDPARLLRALARAAEALGVRIIEGtEVTGIEEEGGVWGVVTTG---E 186
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  246 FDKVVIAAGAWSAsLIEPLGYTAPLDTERGYHCMV-----NINHGLTRPVASAERSLIMTPMSQG-LRVAGTVEFAGINR 319
Cdd:pfam01266 187 ADAVVNAAGAWAD-LLALPGLRLPVRPVRGQVLVLeplpeALLILPVPITVDPGRGVYLRPRADGrLLLGGTDEEDGFDD 265
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 739103264  320 KANNKRALA-LLPHAQALLAsQPLSAKTTWMGCRPsLPDSLPIIGQaPNHNNLYFAFGHQHLGLTQGAITSELITDL 395
Cdd:pfam01266 266 PTPDPEEIEeLLEAARRLFP-ALADIERAWAGLRP-LPDGLPIIGR-PGSPGLYLATGHGGHGLTLAPGIGKLLAEL 339
PRK00711 PRK00711
D-amino acid dehydrogenase;
8-413 2.68e-41

D-amino acid dehydrogenase;


Pssm-ID: 234819 [Multi-domain]  Cd Length: 416  Bit Score: 150.72  E-value: 2.68e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264   8 RVAVIGAGVIGICTALQLQQAGFAVTLYD-ENGLAQGCSKGNAGHFATEQVFPLAQVALLKKLPAMLFNPLGPLRIDWRY 86
Cdd:PRK00711   2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDrQPGPALETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRPDG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  87 AIKALPWFWQFIKNMPTARFIAHTHALKALNEHAIHAYERLLANYQLGHLLTKQGSLLTFEKTPLVDVQRTLAMYQAQ-G 165
Cdd:PRK00711  82 DPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRAETGIQYEGRQGGTLQLFRTQQQLDAAAKDIAVLEEaG 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 166 IKVKLLDTKQVHALEPSL---SDKIKHALLF--EDVAhsiEPHLFCIQLAQKFSLLKGQFRQ----QKVVAITPKSEGFM 236
Cdd:PRK00711 162 VPYELLDRDELAAVEPALagvRHKLVGGLRLpnDETG---DCQLFTQRLAAMAEQLGVKFRFntpvDGLLVEGGRITGVQ 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 237 VSDEQdsLNFDKVVIAAGAWSASLIEPLGYTAPLDTERGYhcmvninhGLTRPVASAERS-----------LIMTPMSQG 305
Cdd:PRK00711 239 TGGGV--ITADAYVVALGSYSTALLKPLGVDIPVYPLKGY--------SLTVPITDEDRApvstvldetykIAITRFDDR 308
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 306 LRVAGTVEFAGINRKANNKRAlALLPH-AQALL-ASQPLSAKTTWMGCRPSLPDSLPIIGQAPnHNNLYFAFGHQHLGLT 383
Cdd:PRK00711 309 IRVGGMAEIVGFDLRLDPARR-ETLEMvVRDLFpGGGDLSQATFWTGLRPMTPDGTPIVGATR-YKNLWLNTGHGTLGWT 386
                        410       420       430
                 ....*....|....*....|....*....|
gi 739103264 384 QGAITSELITDLCLNKAPSINLEPYSINRF 413
Cdd:PRK00711 387 MACGSGQLLADLISGRKPAIDADDLSVARY 416
PRK12409 PRK12409
D-amino acid dehydrogenase small subunit; Provisional
7-401 1.21e-29

D-amino acid dehydrogenase small subunit; Provisional


Pssm-ID: 237093 [Multi-domain]  Cd Length: 410  Bit Score: 118.97  E-value: 1.21e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264   7 QRVAVIGAGVIGICTALQLQQAGFAVTLYD-------ENGLAQG--CSKGNA---GHFATeqvfplaqvaLLKKLPAMLf 74
Cdd:PRK12409   2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDrhryaamETSFANGgqLSASNAevwNHWAT----------VLKGLKWML- 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  75 NPLGPLRIDWRYAIKALPWFWQFIKNMPTARfiAHTHALKALnehAIHAYERLLA---NYQLGHLLTKQGSLLTF-EKTP 150
Cdd:PRK12409  71 RKDAPLLLNPKPSWHKYSWLAEFLAHIPNYR--ANTIETVRL---AIAARKHLFDiaeREGIDFDLERRGILHIYhDKAG 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 151 LVDVQRTLAMYQAQGIKVKLLDTKQVHALEPSLSDKIkHALLFEDVAHSIEPHLFCIQLAQKFSLLKGQFRQ-QKVVAIT 229
Cdd:PRK12409 146 FDHAKRVNALLAEGGLERRAVTPEEMRAIEPTLTGEY-YGGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYgQEVTSIK 224
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 230 PKSEGFMV----SDEQDS--LNFDKVVIAAGAWSASLIEPLGYTAPLDTERGYHCMVNINHGLTR---PVASA--ERSLI 298
Cdd:PRK12409 225 TDGGGVVLtvqpSAEHPSrtLEFDGVVVCAGVGSRALAAMLGDRVNVYPVKGYSITVNLDDEASRaaaPWVSLldDSAKI 304
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 299 MTPM--SQGLRVAGTVEFAGINRKANNKRALALLPHAQALLASQPLSAKTTWMGCRPSLPDSLPIIGQApNHNNLYFAFG 376
Cdd:PRK12409 305 VTSRlgADRFRVAGTAEFNGYNRDIRADRIRPLVDWVRRNFPDVSTRRVVPWAGLRPMMPNMMPRVGRG-RRPGVFYNTG 383
                        410       420
                 ....*....|....*....|....*
gi 739103264 377 HQHLGLTQGAITSELITDLCLNKAP 401
Cdd:PRK12409 384 HGHLGWTLSAATADLVAQVVAQKLP 408
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
3-266 1.80e-13

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 71.33  E-value: 1.80e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264   3 NTRTQRVAVIGAGVIGICTALQLQQA-GFAVTLYD-ENGLAQGCSKGNAG--HFAteqvfplaqvallkklpamlFN-PL 77
Cdd:COG0579    1 MMEMYDVVIIGAGIVGLALARELSRYeDLKVLVLEkEDDVAQESSGNNSGviHAG--------------------LYyTP 60
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  78 GPLRIdwRYAIKALPWFWQFIKnmptarfiahthalkalnehaihayERLLANYQLGHLltkqgsLLTFEKTplvDVQRt 157
Cdd:COG0579   61 GSLKA--RLCVEGNELFYELCR-------------------------ELGIPFKRCGKL------VVATGEE---EVAF- 103
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 158 LAMYQAQGIK-----VKLLDTKQVHALEPSLSDKIKHALLFEDvAHSIEPHLFCIQLAQKFSLLKGQFR-QQKVVAITPK 231
Cdd:COG0579  104 LEKLYERGKAngvpgLEILDREELRELEPLLSDEGVAALYSPS-TGIVDPGALTRALAENAEANGVELLlNTEVTGIERE 182
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 739103264 232 SEGFMVSDEQDSLNFDKVVIAAGAWSASLIEPLGY 266
Cdd:COG0579  183 GDGWEVTTNGGTIRARFVINAAGLYADRLAQMAGI 217
MnmC_Cterm TIGR03197
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain; In ...
21-392 9.61e-09

tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain; In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 274478 [Multi-domain]  Cd Length: 381  Bit Score: 56.89  E-value: 9.61e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264   21 TALQLQQAGFAVTLYDE-NGLAQGCSkGNaghfateqvfplaqvallkklPAMLFNPLgplridwryaikalpwfwqfik 99
Cdd:TIGR03197   1 TAYSLARRGWQVTLYEQdEAPAQGAS-GN---------------------PQGALYPL---------------------- 36
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  100 nmPTARFIAHTHALKALNEHAIHAYERLLanyqlghlltKQGSLLTFEKTPLV-------DVQRTLAMYQAQGIKVKLLD 172
Cdd:TIGR03197  37 --LSADDNPLSRFFLAAFLYARRFYRQLA----------EAGFPFDHEWCGVLqlaydekEAERLQKLLEQLGFPEELAR 104
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  173 TKQVHALEPSLSDKIKHALLFEDVAHSIEPHLFCIQLAQKFSLLKGQFRQQKVVAITPKSEGFMVSDEQ-DSLNFDKVVI 251
Cdd:TIGR03197 105 WVDAEQASQLAGIPLPYGGLFFPQGGWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANgEVIAASVVVL 184
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  252 AAGaWSASLIEPLGYtAPLDTERGyhcmvNINHGLTRPVASAERSLI-----MTPMSQGLRVAG-TVEFAGINR------ 319
Cdd:TIGR03197 185 ANG-AQAPQLAQTAH-LPLRPVRG-----QVSHLPATEALSALKTVLcydgyLTPANNGEHCIGaSYDRNDDDLalread 257
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  320 -KANNKRALALLPhAQALLASQPLSAKTTWMGCRPSLPDSLPIIGQAPN-------------------------HNNLYF 373
Cdd:TIGR03197 258 hAENLERLAECLP-ALAWASEVDISALQGRVGVRCASPDHLPLVGAVPDfeaikeayaelakdknrpiaepapyYPGLYV 336
                         410
                  ....*....|....*....
gi 739103264  374 AFGHQHLGLTQGAITSELI 392
Cdd:TIGR03197 337 LGGLGSRGLTSAPLAAEIL 355
mnmC PRK01747
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ...
2-395 1.98e-07

bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;


Pssm-ID: 234978 [Multi-domain]  Cd Length: 662  Bit Score: 53.31  E-value: 1.98e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264   2 TNTRTQRVAVIGAGVIGICTALQLQQAGFAVTLYDE-NGLAQGCSkGN-AGHFateqvFPLaqvaLLKKLPAMlfnplgp 79
Cdd:PRK01747 256 GSPKARDAAIIGGGIAGAALALALARRGWQVTLYEAdEAPAQGAS-GNrQGAL-----YPL----LSKDDNAL------- 318
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  80 lridwryaikalpwfwqfiknmptARFIAH--THALKAL--NEHAIHAYERLLAN-YQLGHlltkqgSLLTFEKtplvdv 154
Cdd:PRK01747 319 ------------------------SRFFRAafLFARRFYdaLPAAGVAFDHDWCGvLQLAW------DEKSAEK------ 362
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 155 QRTLAMYQAQGIKVKLLDTKQVHALepSLSDKIKHALLFEDvAHSIEPHLFCiqlAQKFSLLKGQFR---QQKVVAITPK 231
Cdd:PRK01747 363 IAKMLALGLPAELARALDAEEAEEL--AGLPVPCGGIFYPQ-GGWLCPAELC---RALLALAGQQLTihfGHEVARLERE 436
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 232 SEGFMVSDEQDSLNFDKVVIAAGAWSASLIEPLgYTAPLDTERGyhcmvNINHGLTRPVASAERSLI-----MTPMSQ-G 305
Cdd:PRK01747 437 DDGWQLDFAGGTLASAPVVVLANGHDAARFAQT-AHLPLYSVRG-----QVSHLPTTPALSALKQVLcydgyLTPQPAnG 510
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264 306 LRVAG-TVEFAGINR-------KANNKRALALLPhAQALLASQPLSAKTTWMGCRPSLPDSLPIIGQ------------- 364
Cdd:PRK01747 511 THCIGaSYDRDDTDTafreadhQENLERLAECLP-QALWAKEVDVSALQGRVGFRCASRDRLPMVGNvpdeaatlaeyaa 589
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|
gi 739103264 365 ---------APNHNNLYFAFGHQHLGLTQGAITSELITDL 395
Cdd:PRK01747 590 lanqqpardAPRLPGLYVAGALGSRGLCSAPLGAELLASQ 629
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
1-35 1.80e-04

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 43.37  E-value: 1.80e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 739103264   1 MTNTRTQ-RVAVIGAGVIGICTALQLQQAGFAVTLY 35
Cdd:COG1231    1 MSRRARGkDVVIVGAGLAGLAAARELRKAGLDVTVL 36
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
8-39 2.82e-04

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 42.93  E-value: 2.82e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 739103264   8 RVAVIGAGVIGICTALQLQQAGFAVTLYDENG 39
Cdd:COG2072    8 DVVVIGAGQAGLAAAYHLRRAGIDFVVLEKAD 39
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
4-36 3.34e-04

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 42.23  E-value: 3.34e-04
                         10        20        30
                 ....*....|....*....|....*....|...
gi 739103264   4 TRTQRVAVIGAGVIGICTALQLQQAGFAVTLYD 36
Cdd:COG0654    1 MMRTDVLIVGGGPAGLALALALARAGIRVTVVE 33
FadB COG1250
3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]; 3-hydroxyacyl-CoA ...
7-43 4.78e-04

3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]; 3-hydroxyacyl-CoA dehydrogenase is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440862 [Multi-domain]  Cd Length: 281  Bit Score: 41.63  E-value: 4.78e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 739103264   7 QRVAVIGAGVIG--IctALQLQQAGFAVTLYD--ENGLAQG 43
Cdd:COG1250    3 KKVAVIGAGTMGagI--AAVFANAGYEVVLLDisPEALERA 41
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
7-36 8.51e-04

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 41.27  E-value: 8.51e-04
                         10        20        30
                 ....*....|....*....|....*....|
gi 739103264   7 QRVAVIGAGVIGICTALQLQQAGFAVTLYD 36
Cdd:COG0493  122 KKVAVVGSGPAGLAAAYQLARAGHEVTVFE 151
PRK06847 PRK06847
hypothetical protein; Provisional
3-34 9.70e-04

hypothetical protein; Provisional


Pssm-ID: 235874 [Multi-domain]  Cd Length: 375  Bit Score: 41.01  E-value: 9.70e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 739103264   3 NTRTQRVAVIGAGVIGICTALQLQQAGFAVTL 34
Cdd:PRK06847   1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDL 32
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
4-44 1.07e-03

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 40.99  E-value: 1.07e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 739103264   4 TRTQRVAVIGAGVIGICTALQLQQAGFAVTLYDENGLAQGC 44
Cdd:COG1233    1 MMMYDVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTPGGR 41
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
7-36 1.16e-03

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 40.97  E-value: 1.16e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 739103264   7 QRVAVIGAGVIGICTALQLQQAGFAVTLYD 36
Cdd:COG1232    2 KRVAVIGGGIAGLTAAYRLAKAGHEVTVLE 31
gltD PRK12810
glutamate synthase subunit beta; Reviewed
4-36 1.37e-03

glutamate synthase subunit beta; Reviewed


Pssm-ID: 237213 [Multi-domain]  Cd Length: 471  Bit Score: 40.92  E-value: 1.37e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 739103264   4 TRT-QRVAVIGAGVIGICTALQLQQAGFAVTLYD 36
Cdd:PRK12810 140 KRTgKKVAVVGSGPAGLAAADQLARAGHKVTVFE 173
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
5-36 1.39e-03

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 40.61  E-value: 1.39e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 739103264   5 RTQRVAVIGAGVIGICTALQLQQAGFAVTLYD 36
Cdd:COG3349    2 MPPRVVVVGGGLAGLAAAVELAEAGFRVTLLE 33
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
8-43 1.58e-03

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 40.63  E-value: 1.58e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 739103264   8 RVAVIGAGVIGICTALQLQQAGFAVTLYDENGLAQG 43
Cdd:PRK12771 139 RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174
soxA_mon TIGR01377
sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of ...
129-274 1.66e-03

sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]


Pssm-ID: 130444 [Multi-domain]  Cd Length: 380  Bit Score: 40.20  E-value: 1.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103264  129 ANYQLgHLLTKQGSLLTFEKTPLVDVQRTLamyQAQGIKVKLLDTKQVHALEPSLSDKIKHALLFEDVAHSIEPHLfCIQ 208
Cdd:TIGR01377  75 AGTKL-HRQTGLLLLGPKENQFLKTIQATL---SRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEK-ALR 149
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 739103264  209 LAQKFSL-LKGQFRQ-QKVVAITPKSEGFMVSDEQDSLNFDKVVIAAGAWSASLIEPLGYTAPLDTER 274
Cdd:TIGR01377 150 ALQELAEaHGATVRDgTKVVEIEPTELLVTVKTTKGSYQANKLVVTAGAWTSKLLSPLGIEIPLQPLR 217
PRK07538 PRK07538
hypothetical protein; Provisional
8-36 2.14e-03

hypothetical protein; Provisional


Pssm-ID: 236046 [Multi-domain]  Cd Length: 413  Bit Score: 39.88  E-value: 2.14e-03
                         10        20
                 ....*....|....*....|....*....
gi 739103264   8 RVAVIGAGVIGICTALQLQQAGFAVTLYD 36
Cdd:PRK07538   2 KVLIAGGGIGGLTLALTLHQRGIEVVVFE 30
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
6-34 3.03e-03

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 39.84  E-value: 3.03e-03
                         10        20
                 ....*....|....*....|....*....
gi 739103264   6 TQRVAVIGAGVIGICTALQLQQAGFAVTL 34
Cdd:COG1148  140 NKRALVIGGGIAGMTAALELAEQGYEVYL 168
PRK07233 PRK07233
hypothetical protein; Provisional
8-45 4.53e-03

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 39.10  E-value: 4.53e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 739103264   8 RVAVIGAGVIGICTALQLQQAGFAVTLYDENGLAQGCS 45
Cdd:PRK07233   1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38
3HCDH_N pfam02737
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; This family also includes lambda ...
8-38 4.92e-03

3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; This family also includes lambda crystallin.


Pssm-ID: 397037 [Multi-domain]  Cd Length: 180  Bit Score: 37.90  E-value: 4.92e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 739103264    8 RVAVIGAGVIGICTALQLQQAGFAVTLYDEN 38
Cdd:pfam02737   1 KVAVIGAGTMGAGIAQVFALAGLEVVLVDIS 31
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
7-36 5.49e-03

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 39.01  E-value: 5.49e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 739103264   7 QRVAVIGAGVIGICTALQLQQAGFAVTLYD 36
Cdd:PRK11749 141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFE 170
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
8-68 5.65e-03

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 38.45  E-value: 5.65e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 739103264    8 RVAVIGAGVIGICTALQLQQAGFAVTLYDENG--LAQGC--SKG--NAGHFAtEQVFPLAQVALLKK 68
Cdd:pfam07992   2 DVVVIGGGPAGLAAALTLAQLGGKVTLIEDEGtcPYGGCvlSKAllGAAEAP-EIASLWADLYKRKE 67
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
7-34 6.73e-03

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 38.58  E-value: 6.73e-03
                         10        20
                 ....*....|....*....|....*...
gi 739103264   7 QRVAVIGAGVIGICTALQLQQAGFAVTL 34
Cdd:COG1251  143 KRVVVIGGGLIGLEAAAALRKRGLEVTV 170
PRK04965 PRK04965
NADH:flavorubredoxin reductase NorW;
7-38 8.87e-03

NADH:flavorubredoxin reductase NorW;


Pssm-ID: 179902 [Multi-domain]  Cd Length: 377  Bit Score: 37.97  E-value: 8.87e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 739103264   7 QRVAVIGAGVIGICTALQLQQAGFAVTLYDEN 38
Cdd:PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNA 173
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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