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Conserved domains on  [gi|739103506|ref|WP_036974089|]
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MULTISPECIES: OmpA family protein [Pseudoalteromonas]

Protein Classification

OmpA family protein( domain architecture ID 10163224)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes; may function in peptidoglycan binding

CATH:  3.30.1330.60
Gene Ontology:  GO:0016020|GO:0009279|GO:0015288|GO:0042834
PubMed:  17559395

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 101-204 1.19e-49

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 156.94  E-value: 1.19e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506 101 NITFATDQSYISSGFHSTLDAIAQVMNKYEKTYLSVEGHTDSTGKDSYNMTLSQQRAQSVKDYLVNHQIMSARISTRGYG 180
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                         90       100
                 ....*....|....*....|....
gi 739103506 181 ETRPVASNDTANGRALNRRVEIQI 204
Cdd:cd07185   83 ESRPIASNDTEEGRAKNRRVEIVI 106
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 101-204 1.19e-49

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 156.94  E-value: 1.19e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506 101 NITFATDQSYISSGFHSTLDAIAQVMNKYEKTYLSVEGHTDSTGKDSYNMTLSQQRAQSVKDYLVNHQIMSARISTRGYG 180
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                         90       100
                 ....*....|....*....|....
gi 739103506 181 ETRPVASNDTANGRALNRRVEIQI 204
Cdd:cd07185   83 ESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 78-207 7.62e-49

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 161.10  E-value: 7.62e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  78 DELAGSGVEVVREGDNIRLVMPSNITFATDQSYISSGFHSTLDAIAQVMNKYEKTYLSVEGHTDSTGKDSYNMTLSQQRA 157
Cdd:COG2885  165 KAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRA 244

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 739103506 158 QSVKDYLVNHQIMSARISTRGYGETRPVASNDTANGRALNRRVEIQIVPN 207
Cdd:COG2885  245 EAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
PRK10510 PRK10510
OmpA family lipoprotein;
68-206 3.14e-47

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 154.65  E-value: 3.14e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  68 YMDKQEEAFRDELAGSGVEVVREGDNIRLVMPSNITFATDQSYISSGFHSTLDAIAQVMNKYEKTYLSVEGHTDSTGKDS 147
Cdd:PRK10510  80 YMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHD 159

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 739103506 148 YNMTLSQQRAQSVKDYLVNHQIMSARISTRGYGETRPVASNDTANGRALNRRVEIQIVP 206
Cdd:PRK10510 160 LNMRLSQQRADSVASALITQGVDASRIRTQGMGPANPIASNSTAEGKAQNRRVEITLSP 218
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 75-204 1.14e-26

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 99.30  E-value: 1.14e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506   75 AFRDELAGSGVEVVREGDNIRLVMPSNITFATDQSYISSGFHSTLDAIAQVMNKyEKTYLSVEGHTDS----TGKDSYNM 150
Cdd:TIGR03350   5 LLAPEIAAGLLTVDEDGDRSVVRLRGDELFASGSAEVRAEFEPLLLRIAKALAA-VPGRITVVGHTDNvpirTARFPSNW 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 739103506  151 TLSQQRAQSVKDYLVNHQIMSARISTRGYGETRPVASNDTANGRALNRRVEIQI 204
Cdd:TIGR03350  84 HLSEARAKAVADVLAQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 104-197 8.24e-24

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 90.50  E-value: 8.24e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  104 FATDQSYISSGFHSTLDAIAQVMNKYE-KTYLSVEGHTDSTGKDSYNMTLSQQRAQSVKDYLVNHQIMSARISTRGYGET 182
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPElKNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 739103506  183 RPVASNDTANGRALN 197
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 101-204 1.19e-49

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 156.94  E-value: 1.19e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506 101 NITFATDQSYISSGFHSTLDAIAQVMNKYEKTYLSVEGHTDSTGKDSYNMTLSQQRAQSVKDYLVNHQIMSARISTRGYG 180
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                         90       100
                 ....*....|....*....|....
gi 739103506 181 ETRPVASNDTANGRALNRRVEIQI 204
Cdd:cd07185   83 ESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 78-207 7.62e-49

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 161.10  E-value: 7.62e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  78 DELAGSGVEVVREGDNIRLVMPSNITFATDQSYISSGFHSTLDAIAQVMNKYEKTYLSVEGHTDSTGKDSYNMTLSQQRA 157
Cdd:COG2885  165 KAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRA 244

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 739103506 158 QSVKDYLVNHQIMSARISTRGYGETRPVASNDTANGRALNRRVEIQIVPN 207
Cdd:COG2885  245 EAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
PRK10510 PRK10510
OmpA family lipoprotein;
68-206 3.14e-47

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 154.65  E-value: 3.14e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  68 YMDKQEEAFRDELAGSGVEVVREGDNIRLVMPSNITFATDQSYISSGFHSTLDAIAQVMNKYEKTYLSVEGHTDSTGKDS 147
Cdd:PRK10510  80 YMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHD 159

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 739103506 148 YNMTLSQQRAQSVKDYLVNHQIMSARISTRGYGETRPVASNDTANGRALNRRVEIQIVP 206
Cdd:PRK10510 160 LNMRLSQQRADSVASALITQGVDASRIRTQGMGPANPIASNSTAEGKAQNRRVEITLSP 218
MotB COG1360
Flagellar motor protein MotB [Cell motility];
74-207 5.27e-37

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 126.88  E-value: 5.27e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  74 EAFRDELAGSGVEVVREGDNIRLVMPSNITFATDQSYISSGFHSTLDAIAQVMNKYEKtYLSVEGHTD----STGKDSYN 149
Cdd:COG1360   33 SALEENLLSGQVEVRITEEGLVIEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEVPN-RIRVEGHTDnvpiSTARFPSN 111

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 739103506 150 MTLSQQRAQSVKDYLVNHQIMSARISTRGYGETRPVASNDTANGRALNRRVEIQIVPN 207
Cdd:COG1360  112 WELSAARAAAVVRYLIEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILRR 169
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 75-204 1.14e-26

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 99.30  E-value: 1.14e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506   75 AFRDELAGSGVEVVREGDNIRLVMPSNITFATDQSYISSGFHSTLDAIAQVMNKyEKTYLSVEGHTDS----TGKDSYNM 150
Cdd:TIGR03350   5 LLAPEIAAGLLTVDEDGDRSVVRLRGDELFASGSAEVRAEFEPLLLRIAKALAA-VPGRITVVGHTDNvpirTARFPSNW 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 739103506  151 TLSQQRAQSVKDYLVNHQIMSARISTRGYGETRPVASNDTANGRALNRRVEIQI 204
Cdd:TIGR03350  84 HLSEARAKAVADVLAQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 102-202 1.27e-24

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 93.01  E-value: 1.27e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  102 ITFATDQSYISSGFHSTLDAIAQVMNKYEKTYLSVEGHTDSTGKDSYNMTLSQQRAQSVKDYLVNHQIMSARISTRGYGE 181
Cdd:TIGR02802   2 VYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYGK 81

                          90       100
                  ....*....|....*....|.
gi 739103506  182 TRPVASNDTANGRALNRRVEI 202
Cdd:TIGR02802  82 EKPAALGHDEAAWAKNRRAVL 102
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 104-197 8.24e-24

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 90.50  E-value: 8.24e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  104 FATDQSYISSGFHSTLDAIAQVMNKYE-KTYLSVEGHTDSTGKDSYNMTLSQQRAQSVKDYLVNHQIMSARISTRGYGET 182
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPElKNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 739103506  183 RPVASNDTANGRALN 197
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 79-208 3.35e-22

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 91.23  E-value: 3.35e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  79 ELAGSGVEVVREGDN-IRLVMPSNITFATDQSYISSGFHSTLDAIAQVMNKYEKTyLSVEGHTD----STGKDSYNMTLS 153
Cdd:PRK09038 111 PLIESGQVTVRRNELwIEIEINSSLLFGSGDAMLSDQAFAILEKVAEVLKPAPNP-IHVEGFTDnvpiATAQFPSNWELS 189

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 739103506 154 QQRAQSVKDYLVNHQIMSARISTRGYGETRPVASNDTANGRALNRRVEIQIVPNT 208
Cdd:PRK09038 190 AARAASVVRLLADDGVAPSRLAAVGYGEFQPVADNDTAEGRARNRRVVLVILRNL 244
motB PRK08944
flagellar motor protein MotB; Reviewed
 67-204 2.91e-20

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 86.22  E-value: 2.91e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  67 DYMDKQEEAFRDELAGSGVEVVREGDNIRLVMPSNITFATDQSYISSGFHSTLDAIAQVMNKYEKTyLSVEGHTD----S 142
Cdd:PRK08944 146 DLVKKLAQQLEKEIEDGAIEIESLGQQIIIRIREKGSFPSGSAFLQPKFKPVVRKIGELLKDVPGI-ITVSGHTDnvpiS 224

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 739103506 143 TGKDSYNMTLSQQRAQSVKDYLV-NHQIMSARISTRGYGETRPVASNDTANGRALNRRVEIQI 204
Cdd:PRK08944 225 SELYRSNWDLSSARAVAVAHELLkVKGFDPQRLKVVGMADTQPLVPNDTAENRARNRRVEIII 287
PRK07033 PRK07033
DotU family type VI secretion system protein;
77-202 2.19e-19

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 85.10  E-value: 2.19e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  77 RDELAGSGVEVVREGDNIRLVMPSNITFATDQSYISSGFHSTLDAIAQVMNKYEKTYLsVEGHTDS----TGKDSYNMTL 152
Cdd:PRK07033 291 EPEIRAGLVAVRDEADRSVVTLRGDGLFASASTSVRDRYQPVLARVADALNQVKGNVL-VTGYSDNvpirTARFPSNWEL 369

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 739103506 153 SQQRAQSVKDYLVNHQIMSARISTRGYGETRPVASNDTANGRALNRRVEI 202
Cdd:PRK07033 370 SQARAQAVRALLAARLGQPERVTAEGRGDSDPVAPNDSAENRARNRRVEI 419
PRK09967 PRK09967
OmpA family protein;
96-206 1.76e-18

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 78.48  E-value: 1.76e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  96 LVMPSNITFATDQSYISSGFHSTLDAIAQVMNKYEKTYLSVEGHTDSTGKDSYNMTLSQQRAQSVKD-YLVNHQIMSARI 174
Cdd:PRK09967  48 LGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADaWAMGGQIPRSNL 127

                         90       100       110
                 ....*....|....*....|....*....|..
gi 739103506 175 STRGYGETRPVASNDTANGRALNRRVEIQIVP 206
Cdd:PRK09967 128 TTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159
PRK10808 PRK10808
outer membrane protein A; Reviewed
 136-204 1.17e-17

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 79.73  E-value: 1.17e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 739103506 136 VEGHTDSTGKDSYNMTLSQQRAQSVKDYLVNHQIMSARISTRGYGETRPVASNDTANGR---------ALNRRVEIQI 204
Cdd:PRK10808 262 VLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGMGKSNPVTGNTCDNVKpraalidclAPDRRVEIEV 339
motB PRK08457
flagellar motor protein MotB; Reviewed
 69-202 5.25e-17

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 76.68  E-value: 5.25e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  69 MDKQEEAFRDELAGSGVEVVREGDNIRLVMPSNITFATDQSYISSG----FhstLDAIAQVMNKYEK-TYLSVEGHTDST 143
Cdd:PRK08457  91 SQNTQQETIERRKGEGGALDQIDNGIALKLPSKLLFENGSAEIINAdmmdY---LKRIAKIITKLPKqVKINVRGYTDNS 167

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 739103506 144 ------GKDSYNmtLSQQRAQSVKDYLVNHQIMSARISTRGYGETRPVASNDTANGRALNRRVEI 202
Cdd:PRK08457 168 plnksrYKDHYE--LAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAPNDSLENRLKNNRVEI 230
PRK09039 PRK09039
peptidoglycan -binding protein;
77-202 5.52e-16

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 75.00  E-value: 5.52e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  77 RDELAG-SGVEVVreGDniRLVMPSNITFATDQSYISSGFHSTLDAIAQVMNKYEKTY-------LSVEGHTD-----ST 143
Cdd:PRK09039 204 REILGDrEGIRIV--GD--RFVFQSEVLFPTGSAELNPEGQAEIAKLAAALIELAKEIppeinwvLRVDGHTDnvplsGT 279

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 739103506 144 GKDSYNMTLSQQRAQSVKDYLVNHQIMSARISTRGYGETRPVASNDTANGRALNRRVEI 202
Cdd:PRK09039 280 GRFRDNWELSSARAISVVKFLIALGVPADRLAAAGFGEFQPLDPGDTPEARARNRRIEL 338
motB PRK07734
flagellar motor protein MotB; Reviewed
 136-209 1.02e-15

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 73.24  E-value: 1.02e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 739103506 136 VEGHTDS----TGKDSYNMTLSQQRAQS-VKDYLVNHQIMSARISTRGYGETRPVASNDTANGRALNRRVEIQIVPNTQ 209
Cdd:PRK07734 178 ISGHTDNvpiaNAQFASNWELSVMRAVNfMQVLLENKELDPEKFSAKGYGEYKPIASNDTAEGRAKNRRVEVLILPLTE 256
PRK06925 PRK06925
flagellar motor protein MotB;
96-208 7.45e-15

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 70.56  E-value: 7.45e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  96 LVMPSNITFATDQSYISSGFHSTLDAIAqVMNKYEKTYLSVEGHTDSTGKDSY----NMTLSQQRAQSVKDYLVNHQIMS 171
Cdd:PRK06925 114 LVLQEAVLFETGEADILKQAEPFLHKIG-VLLSTIPNDIKVEGHTDSRPISTYrypsNWELSAARASSVIRYFTSKEKLD 192

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 739103506 172 A-RISTRGYGETRPVASNDTANGRALNRRVEIQIVPNT 208
Cdd:PRK06925 193 SsRFIAVGYADTKPVVPNTTEENMQENRRVEIVISDPT 230
PRK08126 PRK08126
hypothetical protein; Provisional
 77-206 1.72e-14

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 71.26  E-value: 1.72e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  77 RDELAGSGVEVVREGDNIRLVMPSNITFATDQSYISSGFHSTLDAIAQ----VMNKyektyLSVEGHTDS----TGKDSY 148
Cdd:PRK08126 300 KNEIARGTLSVDEDARHSSVVFRGDAMFVPGQATVNPAMGPLIAKIAReiarVGGK-----VTVTGHTDNqpirSAQFAS 374

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 739103506 149 NMTLSQQRAQSVKDYLVNHQIMSARISTRGYGETRPVASNDTANGRALNRRVEIQIVP 206
Cdd:PRK08126 375 NLVLSEKRAAQVAQMLQSAGVPASRLEAVGKGDAQPVADNRTPQGRAQNRRVEITVAE 432
motB PRK06667
flagellar motor protein MotB; Validated
 136-204 2.41e-13

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 66.74  E-value: 2.41e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 739103506 136 VEGHTDSTGKD-----SYNMTLSQQRAQSVKDYLVNHQIMS-ARISTRGYGETRPVASNDTANGRALNRRVEIQI 204
Cdd:PRK06667 164 IEGHTDNVDVNpegpwKSNWELSGARAVNMLEYILNYGDQSeSWFQVSGFAGSRPLATEDTPEGRAYNRRIDIVI 238
PRK09040 PRK09040
hypothetical protein; Provisional
 73-206 8.48e-12

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 61.96  E-value: 8.48e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  73 EEAFRDELAGSGVEVVregdNIRLVMPSNITFATDQSYISSGFHSTLDAIAQVMNKYEKTY---LSVEGHTD----STGK 145
Cdd:PRK09040  65 EQALAGPLAAGRVTLV----NGRIGISGSVLFALNSDQLQPEGRELLKSLAGPLAAYLRARdeiLMVSGFTDdqpvRAGN 140

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 739103506 146 DSY--NMTLSQQRAQSVKDYLVNHQIMSARISTRGYGETRPVASNDTANGRALNRRVEIQIVP 206
Cdd:PRK09040 141 RRFadNWELSAQRALTVTRALIDAGVPASSVFAAAFGSEQPVASNADDEGRAKNRRVEIAPVP 203
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 67-204 1.49e-11

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 61.23  E-value: 1.49e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  67 DYMDKQEEAFRDELAGSGVEVVREGDNIRLVMPSNITFATDQSYISSgfhSTLDAIAQVMNKYEK--TYLSVEGHTDS-- 142
Cdd:PRK06742  82 DELYKKLKAYVDNNGISQVNVYREDTGVSVVIVDNLIFDTGDANVKP---EAKEIISQLVGFFQSvpNPIVVEGHTDSrp 158

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 739103506 143 --TGKDSYNMTLSQQRAQSVKDYLVN-HQIMSARISTRGYGETRPVASNDTANGRALNRRVEIQI 204
Cdd:PRK06742 159 ihNDKFPSNWELSSARAANMIHHLIEvYNVDDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVIYI 223
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
100-199 3.54e-10

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 56.80  E-value: 3.54e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506 100 SNIT-FATDQSYISSGFHSTLDAIAQVMNKYEKTYLSVEGHTDSTGKDSYNMTLSQQRAQSVKDYLVNHQIMSARISTRG 178
Cdd:PRK10802  68 NNIVyFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVS 147

                         90       100
                 ....*....|....*....|..
gi 739103506 179 YGETRP-VASNDTAnGRALNRR 199
Cdd:PRK10802 148 YGKEKPaVLGHDEA-AYAKNRR 168
PRK07034 PRK07034
hypothetical protein; Provisional
 85-202 6.43e-06

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 45.94  E-value: 6.43e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739103506  85 VEVVREGDNIRLVMPSNITFATDQSYISSGF--HSTLDAIAQVMNKYEKTyLSVEGHTDS----TGKDSYNMTLSQQRAQ 158
Cdd:PRK07034 379 LEVRKDPRGWLLIFTSDGAFRTGEATLSEEFinKKNIERLGLALAPWPGD-IEVIGHTDNkpfrSTSGNNNLKLSAARAS 457

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 739103506 159 SVKDYLVN----HQIMSARISTRGYGETRPVASNDTANGRALNRRVEI 202
Cdd:PRK07034 458 VVADKLREstqiNETHQREISAIGRGESDPLADNATEEGRKRNRRVDI 505
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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