NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|739110592|ref|WP_036980337|]
View 

MULTISPECIES: c-type cytochrome [Pseudoalteromonas]

Protein Classification

c-type cytochrome( domain architecture ID 10006741)

c-type cytochrome is an electron carrier protein that contains one or more heme groups; similar to Helicobacter pylori cytochrome c-553 that binds 1 heme and functions as the natural electron acceptor for a formate dehydrogenase

CATH:  1.10.760.10
Gene Ontology:  GO:0020037|GO:0009055|GO:0046872
PubMed:  31252007|22723177|18568041|12594933|10647174|10395550
SCOP:  3000815

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
34-107 1.47e-23

Cytochrome c553 [Energy production and conversion];


:

Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 86.32  E-value: 1.47e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 739110592  34 AKNCQTCHGADGKAPIMAMYPKLNGQNKEYLVAQMKDIKSGARNNGMsmaMKAMVATVTDEEFEAIADYLSKVQ 107
Cdd:COG2863   22 AAACAACHGADGEGNPGGGAPRLAGQHAEYLVAQLKAFRSGARKNGV---MPAIAKGLSDEDIKALAAYIASLK 92
 
Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
34-107 1.47e-23

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 86.32  E-value: 1.47e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 739110592  34 AKNCQTCHGADGKAPIMAMYPKLNGQNKEYLVAQMKDIKSGARNNGMsmaMKAMVATVTDEEFEAIADYLSKVQ 107
Cdd:COG2863   22 AAACAACHGADGEGNPGGGAPRLAGQHAEYLVAQLKAFRSGARKNGV---MPAIAKGLSDEDIKALAAYIASLK 92
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
34-103 7.45e-07

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 42.78  E-value: 7.45e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739110592   34 AKNCQTCHGADGKAPIMAMYPKlngqNKEYLVAQMKDIKsgarnngmsMAMKAMVATVTDEEFEAIADYL 103
Cdd:pfam13442  11 AANCASCHGTGGAGPSLAGRAL----PPEALVDIIRNGK---------GAMPAFGGDLSDEELEALAAYL 67
 
Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
34-107 1.47e-23

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 86.32  E-value: 1.47e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 739110592  34 AKNCQTCHGADGKAPIMAMYPKLNGQNKEYLVAQMKDIKSGARNNGMsmaMKAMVATVTDEEFEAIADYLSKVQ 107
Cdd:COG2863   22 AAACAACHGADGEGNPGGGAPRLAGQHAEYLVAQLKAFRSGARKNGV---MPAIAKGLSDEDIKALAAYIASLK 92
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
34-103 7.45e-07

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 42.78  E-value: 7.45e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739110592   34 AKNCQTCHGADGKAPIMAMYPKlngqNKEYLVAQMKDIKsgarnngmsMAMKAMVATVTDEEFEAIADYL 103
Cdd:pfam13442  11 AANCASCHGTGGAGPSLAGRAL----PPEALVDIIRNGK---------GAMPAFGGDLSDEELEALAAYL 67
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 34-107 1.16e-06

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 42.91  E-value: 1.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739110592   34 AKNCQTCHGADGKaPIMAMYPKLNGQNKEYLVAQMKDIKS---------GARNNGMSMAMKAMVATVTDEEFEAIADYLS 104
Cdd:pfam00034   8 AANCAACHGVNGE-GAGAGGPDLAGLAARYPGDALGAIREnkhaiggggVDRAGGPPGTGMPAFDGLTDEEIADLVAYLL 86


                  ...
gi 739110592  105 KVQ 107
Cdd:pfam00034  87 SLS 89
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
31-103 2.91e-06

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 43.40  E-value: 2.91e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 739110592  31 LYTAkNCQTCHGADGKApIMAMYPKL-----NGQNKEYLVAQmkdIKSGARNNGMSmamkAMVATVTDEEFEAIADYL 103
Cdd:COG2010   95 LYEQ-NCAACHGADGKG-GLGAAPNLtddalYGGDPEALVET---ILNGRPGGAMP----AFGGQLSDEEIAALAAYL 163
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
31-103 4.76e-04

Cytochrome c551/c552 [Energy production and conversion];


Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 36.03  E-value: 4.76e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 739110592  31 LYTAKNCQTCHGADGKA---PIMAMYPKLNGQNK--EYLVAQmkdIKSGARNNGMSMAMKAMvATVTDEEFEAIADYL 103
Cdd:COG4654   10 LAKKSGCLACHAVDKKLvgpSYKDVAKKYKGKADavAKLAKK---IKKGGSGVWGDVPMPPH-PQLSDAEAKALVKWI 83
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
 31-103 2.34e-03

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 35.60  E-value: 2.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739110592  31 LYtAKNCQTCHGADGK----APIMAMYPKLNGqNKEYLV-AQMKDIKSGA---RNNGMSMAMKamvATVTDEEFEAIADY 102
Cdd:COG3258  123 LY-AERCASCHGADGEgqgrADGQYGFPPLWG-GDSYNDgAGMARLGTLAdfiKGRNMPLGKP---GSLSDDEAWDVAAY 197


                 .
gi 739110592 103 L 103
Cdd:COG3258  198 V 198
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH