|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
8-316 |
4.27e-83 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 254.26 E-value: 4.27e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 8 REWLLAGIIIVMIAGFAMRAPGFGRPGNLVNIFNDTSILIILALGQMVVILTKSIDLSVAANLAFTGMAVAMTNAAFpGI 87
Cdd:COG1172 17 PELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVAL-GL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 88 PLPLLIVMAVGIGAFLGSLNGVLVWWLGIPPIVVTLGTLTIYRGMAFVLSGGGWVNAhqLSPTFLNVPRTMLLGMPVLSW 167
Cdd:COG1172 96 PILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISG--LPDAFRALGQGSLLGIPVPVL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 168 VAILIIAGAWLVLGRTSFGRSAYASGGNPSAAVYAGIDVGRTRFFAFVLSGALAGLASYLWVSRYAVAYVDIAAGFELDS 247
Cdd:COG1172 174 IALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDA 253
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 739227961 248 VAANVIGGISIAGGIGSVAGAVLGALFLGVIKNALPVIGISPFAQMAISGVVIVLAVVFNARAEARKGR 316
Cdd:COG1172 254 IAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRAR 322
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
43-307 |
1.10e-65 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 207.65 E-value: 1.10e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 43 TSILIILALGQMVVILTKSIDLSVAANLAFTGMAVAMTnAAFPGIPLPLLIVMAVGIGAFLGSLNGVLVWWLGIPPIVVT 122
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALL-LVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 123 LGTLTIYRGMAFVLSGGGWVNAHQLSPTFLNVpRTMLLGMPVLSWVAILIIAGAWLVLGRTSFGRSAYASGGNPSAAVYA 202
Cdd:cd06579 80 LGTMFILRGLALLITGGRPISGLPPLFSFFLG-GGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 203 GIDVGRTRFFAFVLSGALAGLASYLWVSRYAVAYVDIAAGFELDSVAANVIGGISIAGGIGSVAGAVLGALFLGVIKNAL 282
Cdd:cd06579 159 GINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGL 238
|
250 260
....*....|....*....|....*
gi 739227961 283 PVIGISPFAQMAISGVVIVLAVVFN 307
Cdd:cd06579 239 NLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
1-305 |
1.28e-44 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 155.26 E-value: 1.28e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 1 MQRLLKNREWLLAG----IIIVMIAGFAMRAPGFGRPGNLVNIFNDTSILIILALGQMVVILTKSIDLSVAANLAFTGmA 76
Cdd:PRK09512 6 SGRRYFTKAWLIEQksliALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTG-A 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 77 VAmtnAAFPGIPLPLLIVM--AVGIGAFLGSLNGVLVWWLGIPPIVVTLGTLTIYRGMAFVLSGGGWVNA--HQLSPTFL 152
Cdd:PRK09512 85 VA---ASIVGIEVNALVAVpaALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTgfTDNADLFG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 153 NVPRTMLLGMPVLSWVAILIIAGAWLVLGRTSFGRSAYASGGNPSAAVYAGIDVGRTRFFAFVLSGALAGLASYLWVSRY 232
Cdd:PRK09512 162 WFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARL 241
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 739227961 233 AVAYVDIAAGFELDSVAANVIGGISIAGGIGSVAGAVLGALFLGVIKNALPVIGISPFAQMAISGVVIVLAVV 305
Cdd:PRK09512 242 SSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVL 314
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
32-306 |
4.40e-29 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 114.86 E-value: 4.40e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 32 RPGNLVNIFNDTSILIILALGQMVVILTKSIDLSVAANLAFTG--MAVAMTNAafpGIPLPLLIVMAVGIGAFLGSLNGV 109
Cdd:NF040906 28 RPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGavAAVLMVNW---GMPWWLAVLLCLLVGALIGAWQGF 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 110 LVWWLGIPPIVVTLGTLTIYRGMAFVLSGG----------------------GWVNAHQLS------------------- 148
Cdd:NF040906 105 WVAYVGIPAFIVTLAGMLVFRGLTLVVLGGqsigpfpdgfqkissgflpdlfGGTGLHLLTlllgvlaaaalvwsqlrgr 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 149 -----------PTFLNVPRTMLL---------------GMP-VLSWVAILIIAGAwLVLGRTSFGRSAYASGGNPSAAVY 201
Cdd:NF040906 185 rrrikyglevePMALFIAKLVLIaaailfftyllasyrGLPnVLIILGVLILVYS-FVTNRTVIGRHIYAVGGNEKAAKL 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 202 AGIDVGRTRFFAFVLSGALAGLASYLWVSRYAVAYVDIAAGFELDSVAANVIGGISIAGGIGSVAGAVLGALFLGVIKNA 281
Cdd:NF040906 264 SGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVMGVLNNG 343
|
330 340
....*....|....*....|....*
gi 739227961 282 LPVIGISPFAQMAISGVVIVLAVVF 306
Cdd:NF040906 344 MSILGIGIDWQQVIKGLVLLAAVAF 368
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
35-304 |
9.49e-20 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 87.31 E-value: 9.49e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 35 NLVNIFNDTSILIILALG-QMVVILTKSIDLSVAANLAFTGMAVAMTNAAFpGIPLPLLIVMAVGIGAFLGSLNGVLVWW 113
Cdd:pfam02653 1 NILNILTLASIYAIAALGlTLIYGIAGVINLGHGGFMMLGAYVAAMLLNLL-GPGLWLALPVGILVGAAVGLLIGILTLR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 114 LGIPPIVVTLGTLTIYRGMAFVLSGG--GWVNAHQLSPTFLNVPRTMLLGMPVLSWV-AILIIAGAWLVLGRTSFGRSAY 190
Cdd:pfam02653 80 LKINEVIITLLLNLAALGLALFLVTGilGGEGGTSGITGPSGFPGAFLSFAFAFIFLlALLLVLALWLLLYRTKFGRALR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 191 ASGGNPSAAVYAGIDVGRTRFFAFVLSGALAGLASYLWVSRYAVAYVDIA-AGFELDSVAANViggisiAGGIGSVAGAV 269
Cdd:pfam02653 160 AVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNFgVGLGLDAIAAVV------LGGAGSPIGVV 233
|
250 260 270
....*....|....*....|....*....|....*.
gi 739227961 270 LGALFLGVIKN-ALPVIGISPFAQMAISGVVIVLAV 304
Cdd:pfam02653 234 IGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
8-316 |
4.27e-83 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 254.26 E-value: 4.27e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 8 REWLLAGIIIVMIAGFAMRAPGFGRPGNLVNIFNDTSILIILALGQMVVILTKSIDLSVAANLAFTGMAVAMTNAAFpGI 87
Cdd:COG1172 17 PELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVAL-GL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 88 PLPLLIVMAVGIGAFLGSLNGVLVWWLGIPPIVVTLGTLTIYRGMAFVLSGGGWVNAhqLSPTFLNVPRTMLLGMPVLSW 167
Cdd:COG1172 96 PILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISG--LPDAFRALGQGSLLGIPVPVL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 168 VAILIIAGAWLVLGRTSFGRSAYASGGNPSAAVYAGIDVGRTRFFAFVLSGALAGLASYLWVSRYAVAYVDIAAGFELDS 247
Cdd:COG1172 174 IALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDA 253
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 739227961 248 VAANVIGGISIAGGIGSVAGAVLGALFLGVIKNALPVIGISPFAQMAISGVVIVLAVVFNARAEARKGR 316
Cdd:COG1172 254 IAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRAR 322
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
43-307 |
1.10e-65 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 207.65 E-value: 1.10e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 43 TSILIILALGQMVVILTKSIDLSVAANLAFTGMAVAMTnAAFPGIPLPLLIVMAVGIGAFLGSLNGVLVWWLGIPPIVVT 122
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALL-LVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 123 LGTLTIYRGMAFVLSGGGWVNAHQLSPTFLNVpRTMLLGMPVLSWVAILIIAGAWLVLGRTSFGRSAYASGGNPSAAVYA 202
Cdd:cd06579 80 LGTMFILRGLALLITGGRPISGLPPLFSFFLG-GGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 203 GIDVGRTRFFAFVLSGALAGLASYLWVSRYAVAYVDIAAGFELDSVAANVIGGISIAGGIGSVAGAVLGALFLGVIKNAL 282
Cdd:cd06579 159 GINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGL 238
|
250 260
....*....|....*....|....*
gi 739227961 283 PVIGISPFAQMAISGVVIVLAVVFN 307
Cdd:cd06579 239 NLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
11-316 |
1.79e-45 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 159.13 E-value: 1.79e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 11 LLAGIIIVMIAGFAMRAPGFGRPGNLVNIFNDTSILIILALGQMVVILTKSIDLSVAANLAFTG--MAVAMTNAafpGIP 88
Cdd:COG4214 27 MIIALVVIWIVFQILTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGavAAVLMVNW---GLP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 89 LPLLIVMAVGIGAFLGSLNGVLVWWLGIPPIVVTLGTLTIYRGMAFVLSGGGWVNAhqLSPTFLNV----------PRTM 158
Cdd:COG4214 104 WWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAP--FDPTFQAIgngflpdilgTLSW 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 159 LL----------------------GMPVLSW---------VAILIIAGAWL-----------------------VLGRTS 184
Cdd:COG4214 182 VLgavavaayvalqlrsrrrrrryGLPVEPLwlfvlklalLAVLILGAVYLlnsyrgipivvlillvlvvvytfVLTRTV 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 185 FGRSAYASGGNPSAAVYAGIDVGRTRFFAFVLSGALAGLASYLWVSRYAVAYVDIAAGFELDSVAANVIGGISIAGGIGS 264
Cdd:COG4214 262 FGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFGGVGT 341
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 739227961 265 VAGAVLGALFLGVIKNALPVIGISPFAQMAISGVVIVLAVVFNARAEARKGR 316
Cdd:COG4214 342 VYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVLSRRRRGA 393
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
1-305 |
1.28e-44 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 155.26 E-value: 1.28e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 1 MQRLLKNREWLLAG----IIIVMIAGFAMRAPGFGRPGNLVNIFNDTSILIILALGQMVVILTKSIDLSVAANLAFTGmA 76
Cdd:PRK09512 6 SGRRYFTKAWLIEQksliALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTG-A 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 77 VAmtnAAFPGIPLPLLIVM--AVGIGAFLGSLNGVLVWWLGIPPIVVTLGTLTIYRGMAFVLSGGGWVNA--HQLSPTFL 152
Cdd:PRK09512 85 VA---ASIVGIEVNALVAVpaALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTgfTDNADLFG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 153 NVPRTMLLGMPVLSWVAILIIAGAWLVLGRTSFGRSAYASGGNPSAAVYAGIDVGRTRFFAFVLSGALAGLASYLWVSRY 232
Cdd:PRK09512 162 WFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARL 241
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 739227961 233 AVAYVDIAAGFELDSVAANVIGGISIAGGIGSVAGAVLGALFLGVIKNALPVIGISPFAQMAISGVVIVLAVV 305
Cdd:PRK09512 242 SSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVL 314
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
1-309 |
1.09e-41 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 147.95 E-value: 1.09e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 1 MQRLLKNREWLLAGIIIVMIAGFAMRAPGFGRPGNLVNIFNDTSILIILALGQMVVILTKSIDLSVAANLAFTGMAVAMT 80
Cdd:PRK15432 2 LKFIQNNRELTALLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGML 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 81 NAAFPGIPLPLLIVMAVGIGAflGSLNGVLVWWLGIPPIVVTLGTLTIYRGMAFVLSGGGWVNAHQLSPTFLNVPrtMLL 160
Cdd:PRK15432 82 LNAGYSLPVACLATLLLGLLA--GFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAP--ILL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 161 GMPVLSWVAILIIAGAWLVLGRTSFGRSAYASGGNPSAAVYAGIDVGRTRFFAFVLSGALAGLASYLWVSRYAVAYVDIA 240
Cdd:PRK15432 158 GISPIGWLTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTG 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 739227961 241 AGFELDSVAANVIGGISIAGGIGSVAGAVLGALFLGVIKNALPVIGISPFAQMAISGVVIVLAVVFNAR 309
Cdd:PRK15432 238 TGLEMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFDGR 306
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
14-304 |
2.93e-40 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 143.37 E-value: 2.93e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 14 GIIIVMIAGFAMRAPG-FGRPGNLVNIFNDTSILIILALGQMVVILTKSIDLSVAANLAFTGMAVAMTNAAfpGI-PLPL 91
Cdd:PRK09699 16 FILAIIVAIFGSLSPEyFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLA--GVdPFLA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 92 LIVMAVGIGAFLGSLNGVLVWWLGIPPIVVTLGTLTIYRGMAFVLSGGGWVNAhqLSPTFLNVPRTMLLGMPVLSWVAIL 171
Cdd:PRK09699 94 ALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYG--FSFDFVNFFAASVIGIPVPVIFSLI 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 172 IIAGAWLVLGRTSFGRSAYASGGNPSAAVYAGIDVGRTRFFAFVLSGALAGLASYLWVSRYAVAYVDIAAGFELDSVAAN 251
Cdd:PRK09699 172 VALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASA 251
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 739227961 252 VIGGISIAGGIGSVAGAVLGALFLGVIKNALPVIGISPFAQMAISGVVIVLAV 304
Cdd:PRK09699 252 IIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAV 304
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
15-314 |
7.00e-38 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 137.90 E-value: 7.00e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 15 IIIVMIAGFAMRAPGFGRPGNLVNIFNDTSILIILALGQMVVILTKSIDLS------VAANLAFTgMAVAMTNA-----A 83
Cdd:PRK09478 21 VLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSagrqvgLAAVVAAT-LLQSMDNAnkvfpE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 84 FPGIPLPLLIVMAVGIGAFLGSLNGVLVWWLGIPPIVVTLGTLTIYRG---MAFVLSGGGWVNAhqLSPTFLNVPRTML- 159
Cdd:PRK09478 100 LATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGinsLYYDFVGASPISG--FDSGFSTFAQGFVa 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 160 ---LGMPVLSWVAILIIAGAWLVLGRTSFGRSAYASGGNPSAAVYAGIDVGRTRFFAFVLSGALAGLASYLWVSRYAVAY 236
Cdd:PRK09478 178 lgsFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSAT 257
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 739227961 237 VDIAAGFELDSVAANVIGGISIAGGIGSVAGAVLGALFLGVIKNALPVIGISPFAQMAISGVVIVLAVVFNARAEARK 314
Cdd:PRK09478 258 NNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSLKYARK 335
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
9-317 |
9.88e-36 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 132.11 E-value: 9.88e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 9 EWLLAGIIIVMIAGFAMRAPGFGRPGNLVNIFNDTSILIILALGQMVVILTKSIDLSVAANLAFTGMAVAMTNAAFPGIP 88
Cdd:PRK11285 29 QYGMLVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATESLW 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 89 LPllIVMAVGIGAFLGSLNGVLVWWLGIPPIVVTLGTLTIYRGMAFVLSGGGWVNAHQlsPTFLNVPRTMLLGMPVLSWV 168
Cdd:PRK11285 109 LG--VAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGISD--ERFFALGYANFFGVPAPIWL 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 169 AILIIAGAWLVLGRTSFGRSAYASGGNPSAAVYAGIDVGRTRFFAFVLSGALAGLASYLWVSRYAVAYVDIAAGFELDSV 248
Cdd:PRK11285 185 TVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVI 264
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 739227961 249 AANVIGGISIAGGIGSVAGAVLGALFLGVIKNALPVIGISPFAQMAISGVVIVLAVVFNARAEARKGRI 317
Cdd:PRK11285 265 SACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQRAKRTV 333
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
32-306 |
4.40e-29 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 114.86 E-value: 4.40e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 32 RPGNLVNIFNDTSILIILALGQMVVILTKSIDLSVAANLAFTG--MAVAMTNAafpGIPLPLLIVMAVGIGAFLGSLNGV 109
Cdd:NF040906 28 RPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGavAAVLMVNW---GMPWWLAVLLCLLVGALIGAWQGF 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 110 LVWWLGIPPIVVTLGTLTIYRGMAFVLSGG----------------------GWVNAHQLS------------------- 148
Cdd:NF040906 105 WVAYVGIPAFIVTLAGMLVFRGLTLVVLGGqsigpfpdgfqkissgflpdlfGGTGLHLLTlllgvlaaaalvwsqlrgr 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 149 -----------PTFLNVPRTMLL---------------GMP-VLSWVAILIIAGAwLVLGRTSFGRSAYASGGNPSAAVY 201
Cdd:NF040906 185 rrrikyglevePMALFIAKLVLIaaailfftyllasyrGLPnVLIILGVLILVYS-FVTNRTVIGRHIYAVGGNEKAAKL 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 202 AGIDVGRTRFFAFVLSGALAGLASYLWVSRYAVAYVDIAAGFELDSVAANVIGGISIAGGIGSVAGAVLGALFLGVIKNA 281
Cdd:NF040906 264 SGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVMGVLNNG 343
|
330 340
....*....|....*....|....*
gi 739227961 282 LPVIGISPFAQMAISGVVIVLAVVF 306
Cdd:NF040906 344 MSILGIGIDWQQVIKGLVLLAAVAF 368
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
10-279 |
2.05e-26 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 106.58 E-value: 2.05e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 10 WLLAGIIIVMIAGFAMRAPGFGRPGNLVNIFNDTSILIILALGQMVVILTKSIDLSVAANLAFTGMAVAMTNAAFpGIPL 89
Cdd:PRK11618 9 MITIGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDY-GWSP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 90 PLLIVMAVGIGAFLGSLNGVLVWWLGIPPIVVTLGTLTIYRGMAFVLSGGGWVNAH----QLSPTFLNVPRTMLLGMPVL 165
Cdd:PRK11618 88 LLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESIPINHpfydTLSSLAWKLPGGGRLSAMAL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 166 swVAILIIAGAWLVLGRTSFGRSAYASGGNPSAAVYAGIDVGRTRFFAFVLSGALAGLA----SYLWVSRYAVAyvdiAA 241
Cdd:PRK11618 168 --IMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAgivfSLYTSAGYALA----AV 241
|
250 260 270
....*....|....*....|....*....|....*...
gi 739227961 242 GFELDSVAANVIGGISIAGGIGSVAGAVLGALFLGVIK 279
Cdd:PRK11618 242 GVELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQ 279
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
9-305 |
4.13e-25 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 103.37 E-value: 4.13e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 9 EWLLAGIIIVMIAGFAMRAPGFGRPGNLVNIFNDTSILIILALGQMVVILTKSIDLSVAANLAFTGMAVAMTNAAfpGIP 88
Cdd:PRK15038 8 ELALAALLVIEILAFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQS--GVP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 89 LPLLIVMAVGIGAFLGSLNGVLVWWLGIPPIVVTLGTLTIYRGMAFVLSG----GGWVNAHQLSPTFLNVPRTMLLGMPV 164
Cdd:PRK15038 86 MPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLSGmagaTGYEGIGGFPMAFTDFANLDVLGLPV 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 165 LSWVAILIIAGAWLVLGRTSFGRSAYASGGNPSAAVYAGIDVGRTRFFAFVLSGALAGLASYLWVSRYAVAYVDIAAGFE 244
Cdd:PRK15038 166 PLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFL 245
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 739227961 245 LDSVAANVIGGISIAGGIGSVAGAVLGALFLGVIKNALPVIGISPFAQMAISGVVIVLAVV 305
Cdd:PRK15038 246 MPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVVV 306
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
35-304 |
9.49e-20 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 87.31 E-value: 9.49e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 35 NLVNIFNDTSILIILALG-QMVVILTKSIDLSVAANLAFTGMAVAMTNAAFpGIPLPLLIVMAVGIGAFLGSLNGVLVWW 113
Cdd:pfam02653 1 NILNILTLASIYAIAALGlTLIYGIAGVINLGHGGFMMLGAYVAAMLLNLL-GPGLWLALPVGILVGAAVGLLIGILTLR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 114 LGIPPIVVTLGTLTIYRGMAFVLSGG--GWVNAHQLSPTFLNVPRTMLLGMPVLSWV-AILIIAGAWLVLGRTSFGRSAY 190
Cdd:pfam02653 80 LKINEVIITLLLNLAALGLALFLVTGilGGEGGTSGITGPSGFPGAFLSFAFAFIFLlALLLVLALWLLLYRTKFGRALR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 191 ASGGNPSAAVYAGIDVGRTRFFAFVLSGALAGLASYLWVSRYAVAYVDIA-AGFELDSVAANViggisiAGGIGSVAGAV 269
Cdd:pfam02653 160 AVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNFgVGLGLDAIAAVV------LGGAGSPIGVV 233
|
250 260 270
....*....|....*....|....*....|....*.
gi 739227961 270 LGALFLGVIKN-ALPVIGISPFAQMAISGVVIVLAV 304
Cdd:pfam02653 234 IGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
43-304 |
1.44e-17 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 81.17 E-value: 1.44e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 43 TSILIILALGQMVVILTKSIDLSVAANLAFTGMAVAMTNAAFPGIPLPLLIVMAVgIGAFLGSLNGVLVWWLGIPPIVVT 122
Cdd:cd06574 1 GLIYAILALGVYIVFRILGFPDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAIL-AGAAAGLVTGFLHTRLKINGLLAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 123 LGTLTIYRGMAFVLSGGGWVNAHQ---LSPTFLNVPRTMLLGMPVLSWVAILIIAGAWLVLGRTSFGRSAYASGGNPSAA 199
Cdd:cd06574 80 ILIMIGLYSINLRIMGGPNIPLGTrdtLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 200 VYAGIDVGRTRFFAFVLSGALAGLASYLWVSRYAVAYVDIAAGFELDSVAANVI--GGISIAGGIGSVAGAVLGALFLGV 277
Cdd:cd06574 160 RSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIggAIVGRRTIKASILGVIIGAILYRI 239
|
250 260
....*....|....*....|....*..
gi 739227961 278 IKNALPVIGISPFAQMAISGVVIVLAV 304
Cdd:cd06574 240 ALALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
11-224 |
1.42e-14 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 73.62 E-value: 1.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 11 LLAGIIIVMIAGF-------AMRAPGFGRPGNLVNIFNDTSILIILALGQMVVILTKSIDLSVAANLAFTGMAVAMTNAA 83
Cdd:COG4603 27 LLVGALLILLAGAnpleaysALFQGAFGSPYGLGETLVKATPLILTGLAVAVAFRAGLFNIGAEGQLYLGALAAAAVGLA 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 84 FPGIP----LPLLIVMAVGIGAFLGSLNGVLVWWLGIPPIVVTLGTLTIYRGMAFVLSGGGWVNAHQLSPTFLNVPRTML 159
Cdd:COG4603 107 LPGLPgplhLPLALLAGALAGALWAAIPGLLKARFGVNEVITTLMLNYIALYLVNYLVRGPLRDPGSGFPQTPPIPESAR 186
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 739227961 160 LGMPV----LSW---VAILIIAGAWLVLGRTSFGRSAYASGGNPSAAVYAGIDVGRTRFFAFVLSGALAGLA 224
Cdd:COG4603 187 LPRLLpgtrLHLgllIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLA 258
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
71-306 |
5.12e-14 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 70.16 E-value: 5.12e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 71 AFTGMAVAMTNAAFPGIPLPLLIVMAVGIGAFLGSLNGVLVWWLGIPPIVVTLgtltiyrgmAFVLSGGGWVNahqlspt 150
Cdd:cd06580 32 AFAAALVALYLGLPATGSLPLGLLAAALAGALWALLPALLKAKLGVNEVISGL---------MLNYIALGLTS------- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 151 flnvprtmllgmpVLSWVAILIIAGAWLVLGRTSFGRSAYASGGNPSAAVYAGIDVGRTRFFAFVLSGALAGLA-SYLWV 229
Cdd:cd06580 96 -------------YLLLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAgAYLVL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 739227961 230 SRYAVAYVDIAAGFELDSVAAnviggisIAGGIGSVAGAVLGALFLGVIKNALPVIGISPFAQMAISGVVIVLAVVF 306
Cdd:cd06580 163 GVQGRFTEGMSAGYGFIAIAV-------ALLGRWNPLGILLAALLFGALEAGGIALQRSGGVPSELVQVLPGIIVLF 232
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
44-301 |
6.59e-11 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 62.06 E-value: 6.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 44 SILIILALG-QMVVILTKSIDLSVAAnLAFTGMAVAMTNAAFPGIPLPLLIVMAVGIGAFLGSLNGVLVWWL-----GIP 117
Cdd:cd06582 6 AIYALIALGlTLIFGVTGVINFAHGE-FYMLGAYVAYTLLVALGLPFWLALLLALLVAALLGVLLERLVLRPlrgapLLT 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 118 PIVVTLGTLTIYRGMAFVLSGGGWVNAHQLSPTFLNVPRTMLLGMPVLSW-VAILIIAGAWLVLGRTSFGRSAYASGGNP 196
Cdd:cd06582 85 LLITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGVTIPPYRLFIIaVALVLLAALYLFLRRTRLGRAIRAVAQNP 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 197 SAAVYAGIDVGRTRFFAFVLSGALAGLASYLWVSRYAVaYVDIAAGFELDSVAANViggisiAGGIGSVAGAVLGALFLG 276
Cdd:cd06582 165 EAARLLGINVRRVFALTFALGAALAGLAGVLLAPITGV-SPTMGLLLLLKAFAAVV------LGGLGSIPGAVVGGLLLG 237
|
250 260
....*....|....*....|....*
gi 739227961 277 VIKNALPVIGISPFAQMAISGVVIV 301
Cdd:cd06582 238 LAESLAAAYLSSGYKDAVAFVLLIL 262
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
36-306 |
1.27e-09 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 58.17 E-value: 1.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 36 LVNIFNDTSILIILALGQMVVI-LTKSIDLSVAANLAFTGMAVAMTNAAFpGIPLPLLIVMAVGIGAFLGSLNGVLVWWL 114
Cdd:COG4177 4 YLSLLTLILIYAILALGLNLLLgYTGLLSLGHAAFFGIGAYAAALLTTHL-GLPFWLALLLAGLVAALLGLLIGLPALRL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 115 -GIPPIVVTLGTLTIYRGMAFVLSGggWVNAHQlspTFLNVPRTMLLGMPVLSWVAILIIAGAWLVLG--------RTSF 185
Cdd:COG4177 83 rGDYLAIATLAFAEIVRLLALNLES--LTGGAD---GLSGIPRPTLFGLDLGSPLAFYYLVLALLVLVllllrrlvRSRF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 186 GRSAYASGGNPSAAVYAGIDVGRTRFFAFVLSGALAGLASYLWVSRYAVA---YVDIAAGFELDSVAAnviggisiAGGI 262
Cdd:COG4177 158 GRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVspeSFSFLLSIEILLMVV--------LGGL 229
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 739227961 263 GSVAGAVLGALFLGVIKNALPVIgisPFAQMAISGVVIVLAVVF 306
Cdd:COG4177 230 GSLLGPVLGAVLLVLLPELLRSL---PEYRLLIFGLLLILVVLF 270
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
44-301 |
3.44e-09 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 56.99 E-value: 3.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 44 SILIILALG-QMVVILTKSIDLSVAANLAFTGMAVAMTNAAFpGIPLPLLIVMAVGIGAFLGslngVLVWWLGIPP---- 118
Cdd:COG0559 16 SIYALIALGlTLIFGVMGVINFAHGEFVMLGAYVAYTLATLL-GLPLWLALLLAVLVAALLG----VLLERLVIRPlrga 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 119 -----IVVTLGTLTIYRGMAFVLSGG-------GWVNAHQLSPTFLNVPRTMLLGmpvlswVAILIIAGAWLVLGRTSFG 186
Cdd:COG0559 91 pplalLLATIGLSLVLQGLVLLIFGAdprsfpaLLSGSVELGGVSIPAYRLFIIV------VALVLLAALWLFLRRTRLG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 187 RSAYASGGNPSAAVYAGIDVGRTRFFAFVLSGALAGLASYLWVSRYAVAYvDIAAGFELDSVAANViggisiAGGIGSVA 266
Cdd:COG0559 165 LAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSVSP-TMGFLLGLKAFAAVV------LGGLGSIP 237
|
250 260 270
....*....|....*....|....*....|....*
gi 739227961 267 GAVLGALFLGVIKNALPVIGISPFAQMAISGVVIV 301
Cdd:COG0559 238 GAVVGGLLLGLAESLGAAYLPSGYKDVVAFVLLIL 272
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
82-306 |
9.54e-08 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 52.45 E-value: 9.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 82 AAFPGIPLPLLIVMAVGIGAFLGSLNGVLVWWL-GIPPIVVTLGTLTIYRgmAFVLSGGGWVNAHQ-----LSPTFLNVP 155
Cdd:cd06581 40 ATRLGLPFWLALLAAGLVAALVGLLLGLPALRLrGVYFAIATLAFAEIVR--LLALNWSSLTGGSNglsgiPPPLLGGLL 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739227961 156 RTMLLGMPVLSWVAILIIAGAWLVLGRTSFGRSAYASGGNPSAAVYAGIDVGRTRFFAFVLSGALAGLASYLWVSRYAVA 235
Cdd:cd06581 118 LSSPLAFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFV 197
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 739227961 236 YVDIAAGFELDSVAANViggisIAGGIGSVAGAVLGALFLGVIKNALpvIGISPFAQMAISGVVIVLAVVF 306
Cdd:cd06581 198 SPESFGFALSIELLLMV-----VLGGLGSLLGPVLGAALLVLLPELL--RSLGPGLRLLVFGLLLILVVLF 261
|
|
| |
