|
Name |
Accession |
Description |
Interval |
E-value |
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
17-278 |
1.42e-65 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 205.82 E-value: 1.42e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 17 VDDPADPRIAAFRDIRERDLTGRQGRFIAEGT-VVLRMLAAAHKAggafaaESILILRNRLSGVADILSDF-PEDVPVYV 94
Cdd:COG0566 1 MTSPSNPRVKDLRKLRDKKYREEEGLFLAEGRhAVEEALKAGREI------EELLVTEGALDRLAELLALAkAAGIPVYE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 95 AEAPVLDGIVGFHLHRGILALGRRVRDDGLEEMIAALPASSLVLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCCDPL 174
Cdd:COG0566 75 VSREVLDKLSGTETHQGVLAVVRPPEYADLEDLLAEAGEPPLLLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 175 YRKALRVSVGSVLSVPYHRGGGAVEMLERLAAAGFAIWSLSPGGETEIRDIPRAERMALVIGTEGEGLPQSVLSR-FHTA 253
Cdd:COG0566 155 NPKVVRASAGALFHVPVARVTNLADALEELKEAGFWVVGTDLDGEASLYEVDLPGPVALVLGNEGKGLSRLVLEAcDELV 234
|
250 260
....*....|....*....|....*
gi 739228538 254 RIAQSPQLDSLNAGTASGLALYQMA 278
Cdd:COG0566 235 RIPMAGGVESLNVAVAAAILLYEAA 259
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
136-277 |
4.89e-35 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 123.31 E-value: 4.89e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 136 LVLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEMLERLAAAGFAIWSLS 215
Cdd:cd18095 1 LVLVLDGVQDPGNLGTIIRTAAAFGVDGVILSKGTVDPYNPKVVRASMGALFRLPIIRVDDLEELLEELKEAGYKVVAAD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 739228538 216 PGGETEIRDIPRAERMALVIGTEGEGLPQSVLSR-FHTARIAQSPQLDSLNAGTASGLALYQM 277
Cdd:cd18095 81 LDGGSSLYDLDLPKPVALVLGNEGNGLSDELLELcDKRVTIPMSGGVESLNVAVAAAILLYEL 143
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
135-275 |
1.15e-31 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 114.55 E-value: 1.15e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 135 SLVLVGCGISNHDNLGAMFRNAAAFYADAVLL-DETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEMLERLAAAGFAIWS 213
Cdd:pfam00588 1 PLVVVLDNIQDPGNLGAIIRTAAAFGADGLILvEPRSADPYNPKAIRASAGALFHLPLVVVDNLEEALKDLKEAGYAVVA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 739228538 214 LSPGGeTEIRDIPRAERMALVIGTEGEGLPQSVLSRFH-TARIAQSPQLDSLNAGTASGLALY 275
Cdd:pfam00588 81 TSLGG-KSLYEIDFPKKVALVFGNEGTGLSNEVLELCDrLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
90-275 |
3.04e-17 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 78.92 E-value: 3.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 90 VPVYVAEAPVLDGIVGFHLHRGILALGRRVRDDGLEEMIAALPA--SSLVLVGCGISNHDNLGAMFRNAAAFYADAVLLD 167
Cdd:TIGR00186 43 INIQLVDRQKLDQLTKGGNHQGIAAKVKPILYKDLNDLYKTAKSkkQPFLLILDEITDPHNLGAILRTAEAFGVDGVILP 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 168 ETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEMLERLAAAGFAIWSLSPGGETEIRDIPRAERMALVIGTEGEGLPQSVL 247
Cdd:TIGR00186 123 KRRSAPLNSTVVKTSSGAVEYVPLARVTNLSRTITKLKESGFWTVGTDLDAQDTLYQVKLTKPLALVVGNEGEGVSRLIK 202
|
170 180
....*....|....*....|....*....
gi 739228538 248 SRF-HTARIAQSPQLDSLNAGTASGLALY 275
Cdd:TIGR00186 203 ENCdFLIKIPMAGKVDSLNVSVAAGILLF 231
|
|
| PRK10864 |
PRK10864 |
putative methyltransferase; Provisional |
93-274 |
2.36e-10 |
|
putative methyltransferase; Provisional
Pssm-ID: 236779 [Multi-domain] Cd Length: 346 Bit Score: 60.18 E-value: 2.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 93 YVAEAPVLDGIVGFHLHRGILALGRRVRDDGLEEMIAALPASSLVLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCcd 172
Cdd:PRK10864 156 HVVDEAELTKASGTEHHGGVCFLIKKRNGTDVQQWLAQAGAQDCVLALEDVGNPHNLGGIMRSCAHFGVKGVVVQDAA-- 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 173 pLYRK--ALRVSVGSVLSVPYHRGGGAVEMLERLAAAGFAIWSLSPGGETEIRDIPRAERMALVIGTEGEGLPQSVLSRF 250
Cdd:PRK10864 234 -LLESgaAIRTAEGGAEHVQPITGDSFVDVLDDFRQAGYTIVTTSSHKGTPLFKASLPAKMVLVLGQEYDGLSDAARQQG 312
|
170 180
....*....|....*....|....*
gi 739228538 251 HTA-RIAQSPQLDSLNAGTASGLAL 274
Cdd:PRK10864 313 DLSvSIDGTGNVESLNVSVATGVLL 337
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
17-278 |
1.42e-65 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 205.82 E-value: 1.42e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 17 VDDPADPRIAAFRDIRERDLTGRQGRFIAEGT-VVLRMLAAAHKAggafaaESILILRNRLSGVADILSDF-PEDVPVYV 94
Cdd:COG0566 1 MTSPSNPRVKDLRKLRDKKYREEEGLFLAEGRhAVEEALKAGREI------EELLVTEGALDRLAELLALAkAAGIPVYE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 95 AEAPVLDGIVGFHLHRGILALGRRVRDDGLEEMIAALPASSLVLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCCDPL 174
Cdd:COG0566 75 VSREVLDKLSGTETHQGVLAVVRPPEYADLEDLLAEAGEPPLLLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 175 YRKALRVSVGSVLSVPYHRGGGAVEMLERLAAAGFAIWSLSPGGETEIRDIPRAERMALVIGTEGEGLPQSVLSR-FHTA 253
Cdd:COG0566 155 NPKVVRASAGALFHVPVARVTNLADALEELKEAGFWVVGTDLDGEASLYEVDLPGPVALVLGNEGKGLSRLVLEAcDELV 234
|
250 260
....*....|....*....|....*
gi 739228538 254 RIAQSPQLDSLNAGTASGLALYQMA 278
Cdd:COG0566 235 RIPMAGGVESLNVAVAAAILLYEAA 259
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
136-277 |
4.89e-35 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 123.31 E-value: 4.89e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 136 LVLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEMLERLAAAGFAIWSLS 215
Cdd:cd18095 1 LVLVLDGVQDPGNLGTIIRTAAAFGVDGVILSKGTVDPYNPKVVRASMGALFRLPIIRVDDLEELLEELKEAGYKVVAAD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 739228538 216 PGGETEIRDIPRAERMALVIGTEGEGLPQSVLSR-FHTARIAQSPQLDSLNAGTASGLALYQM 277
Cdd:cd18095 81 LDGGSSLYDLDLPKPVALVLGNEGNGLSDELLELcDKRVTIPMSGGVESLNVAVAAAILLYEL 143
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
135-275 |
1.15e-31 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 114.55 E-value: 1.15e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 135 SLVLVGCGISNHDNLGAMFRNAAAFYADAVLL-DETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEMLERLAAAGFAIWS 213
Cdd:pfam00588 1 PLVVVLDNIQDPGNLGAIIRTAAAFGADGLILvEPRSADPYNPKAIRASAGALFHLPLVVVDNLEEALKDLKEAGYAVVA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 739228538 214 LSPGGeTEIRDIPRAERMALVIGTEGEGLPQSVLSRFH-TARIAQSPQLDSLNAGTASGLALY 275
Cdd:pfam00588 81 TSLGG-KSLYEIDFPKKVALVFGNEGTGLSNEVLELCDrLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| SpoU-like_family |
cd18082 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
137-276 |
3.97e-18 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349955 Cd Length: 145 Bit Score: 78.81 E-value: 3.97e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 137 VLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEMLERLAAAGFAIWSLSP 216
Cdd:cd18082 1 HLVLDNIRSPGNIGSIFRTADAFGVEKIYLVGPTADIFDPKAKRTSRGTHFSVPYERVDNFEEYLKSLKEEGYPLIGLEL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 739228538 217 G-GETEIRD--IPRAERMALVIGTEGEGLPQSVLSR-FHTARIAQSPQLDSLNAGTASGLALYQ 276
Cdd:cd18082 81 TdGSIPLSEfkFKKPKKIALIFGNERSGLSPELLALcDYTVHIPMSGKNSSLNVSVATGIALYE 144
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
90-275 |
3.04e-17 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 78.92 E-value: 3.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 90 VPVYVAEAPVLDGIVGFHLHRGILALGRRVRDDGLEEMIAALPA--SSLVLVGCGISNHDNLGAMFRNAAAFYADAVLLD 167
Cdd:TIGR00186 43 INIQLVDRQKLDQLTKGGNHQGIAAKVKPILYKDLNDLYKTAKSkkQPFLLILDEITDPHNLGAILRTAEAFGVDGVILP 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 168 ETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEMLERLAAAGFAIWSLSPGGETEIRDIPRAERMALVIGTEGEGLPQSVL 247
Cdd:TIGR00186 123 KRRSAPLNSTVVKTSSGAVEYVPLARVTNLSRTITKLKESGFWTVGTDLDAQDTLYQVKLTKPLALVVGNEGEGVSRLIK 202
|
170 180
....*....|....*....|....*....
gi 739228538 248 SRF-HTARIAQSPQLDSLNAGTASGLALY 275
Cdd:TIGR00186 203 ENCdFLIKIPMAGKVDSLNVSVAAGILLF 231
|
|
| SpoU-like |
cd18097 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
148-277 |
7.07e-12 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349970 Cd Length: 144 Bit Score: 61.81 E-value: 7.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 148 NLGAMFRNAAAFYADAVLLDETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEMLERLAAAGFAIWSLspggETE-----I 222
Cdd:cd18097 13 NVGSIFRTADAAGVEKIYLCGYTPTPPHPKVAKTALGAEESVPWEHFEDTLEAVRALKARGYTIIAL----ETTensvpL 88
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 739228538 223 RDIPRAERMALVIGTEGEGLPQSVLSRFHtaRIAQSPQL---DSLNAGTASGLALYQM 277
Cdd:cd18097 89 HEARLPRPLALVLGNEVRGVSPEVLALCD--AVVEIPMFgrkNSLNVAVAAAVALYEL 144
|
|
| SpoU-like_RNA-MTase |
cd18109 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
142-277 |
2.31e-11 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349982 Cd Length: 141 Bit Score: 60.25 E-value: 2.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 142 GISNHDNLGAMFRNAAAFYADAVLLDETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEMLErlAAAGFAIWSLSPGGEtE 221
Cdd:cd18109 7 GIQDPGNLGTIIRTADWFGIRQIICSPDTVDPYNPKVVQASMGSIFRVQIHYTDLPALLAE--LKKAFPVYGADLDGE-N 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 222 IRDIPRAERMALVIGTEGEGLPQSVLS----RFHTARIAQSPqlDSLNAGTASGLALYQM 277
Cdd:cd18109 84 LYEFTLPEKGILVMGNEGHGISPEVLKllthRLTIPRYGKGA--ESLNVAVATAILLSEF 141
|
|
| PRK10864 |
PRK10864 |
putative methyltransferase; Provisional |
93-274 |
2.36e-10 |
|
putative methyltransferase; Provisional
Pssm-ID: 236779 [Multi-domain] Cd Length: 346 Bit Score: 60.18 E-value: 2.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 93 YVAEAPVLDGIVGFHLHRGILALGRRVRDDGLEEMIAALPASSLVLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCcd 172
Cdd:PRK10864 156 HVVDEAELTKASGTEHHGGVCFLIKKRNGTDVQQWLAQAGAQDCVLALEDVGNPHNLGGIMRSCAHFGVKGVVVQDAA-- 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 173 pLYRK--ALRVSVGSVLSVPYHRGGGAVEMLERLAAAGFAIWSLSPGGETEIRDIPRAERMALVIGTEGEGLPQSVLSRF 250
Cdd:PRK10864 234 -LLESgaAIRTAEGGAEHVQPITGDSFVDVLDDFRQAGYTIVTTSSHKGTPLFKASLPAKMVLVLGQEYDGLSDAARQQG 312
|
170 180
....*....|....*....|....*
gi 739228538 251 HTA-RIAQSPQLDSLNAGTASGLAL 274
Cdd:PRK10864 313 DLSvSIDGTGNVESLNVSVATGVLL 337
|
|
| SpoU-like_MRM1 |
cd18105 |
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose ... |
148-277 |
4.27e-09 |
|
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose residues G1145 to GmG residue of the mitochondrial 16S rRNA. MRM1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349978 Cd Length: 158 Bit Score: 54.45 E-value: 4.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 148 NLGAMFRNAAAFYADAVLLDETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEMLERLAAAGFAIWSLSPGGE-------- 219
Cdd:cd18105 13 NLGAILRSAYFLGVDGVVVSSKNSAPLSPVVSKASAGALELMPIYSVDNLASFLKSSKENGWKVVGTSAPPSassdkkti 92
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 739228538 220 --TEIRDIPRAERMALVIGTEGEGLPQSVLS------RFHTARIAQSPQLDSLNAGTASGLALYQM 277
Cdd:cd18105 93 paNELSELLLEKPTILVLGNEGRGLRTNIKNlcdylvSIPGGRSAENPGVDSLNVSVAAGILLHSL 158
|
|
| PRK11181 |
PRK11181 |
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; |
75-277 |
1.03e-08 |
|
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;
Pssm-ID: 183021 [Multi-domain] Cd Length: 244 Bit Score: 54.59 E-value: 1.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 75 RLSGVADILSDFpeDVPVYVAEAPVLDGIVGFHLHRGILAL---GRRVRDDGLEEMIAALpASSLVLVGCGISNHDNLGA 151
Cdd:PRK11181 35 RLLPLINELEAQ--GIVIQLANRQTLDEKAEGAVHQGIIARvkpGRQLQENDLPDLLASL-EQPFLLILDGVTDPHNLGA 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 152 MFRNAAAFYADAVLLDETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEMLERLAAAGfaIWSLSPGGETEiRDIPRAE-- 229
Cdd:PRK11181 112 CLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAETVPLIRVTNLARTMRMLQEKN--IWIVGTAGEAD-HTLYQSKlt 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 739228538 230 -RMALVIGTEGEGLPQsvLSRFHTARIAQSP---QLDSLNAGTASGLALYQM 277
Cdd:PRK11181 189 gPLALVMGAEGEGMRR--LTREHCDELISIPmagSVSSLNVSVATGICLFEA 238
|
|
| SpoU-like_RNMTL1 |
cd18106 |
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) ... |
137-277 |
1.07e-07 |
|
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) catalyzes the methylation of 2'-O-ribose residues G1370 to GmG residue of the mitochondrial 16S rRNA. RNMTL1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349979 Cd Length: 148 Bit Score: 50.33 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 137 VLVGC-GISNHDNLGAMFRNAAAFYADAVLLDETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEMLERLA-------AAG 208
Cdd:cd18106 1 LTVICdNIRDPGNLGSILRSAAAAGCSKVLLTKGCVDPWEPKVLRAGAGAHFRLPIYGNLSWDDIPNYLPddskvflADN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 739228538 209 FAIWSLSPggetEIrDIPRAeRMALVIGTEGEGL-PQSV----LSRFHTARIAQSPQLDSLNAGTASGLALYQM 277
Cdd:cd18106 81 NLPVQPYD----SI-DYCSG-PIVLVIGGETHGVsPEAYklahSTGGSRVHIPLANGVDSLNSAVAASILLFEM 148
|
|
| SpoU-like_TrmH |
cd18092 |
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group ... |
148-277 |
1.43e-07 |
|
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the ribose of the universally conserved guanosine 18 (G18) position in tRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349965 Cd Length: 162 Bit Score: 50.16 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 148 NLGAMFRNAAAF-YADAVLLDEtccDPLYRKALRVSVGSV--LSVpyHRGGGAVEMLERLAAAGFAIWSLSPGGETE-IR 223
Cdd:cd18092 29 NASAVLRTCDAFgVQDVHVIEP---KNKFKKNRGVAMGADkwLDV--HRHDSTEECLAALKEQGYRIVATSLSPDAVpLD 103
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 739228538 224 DIPRAERMALVIGTEGEGLPQSVLS----RFHtarIaqsPQL---DSLNAGTASGLALYQM 277
Cdd:cd18092 104 ELDYTRPTALVFGNEKDGVSEEALAaadeRVY---I---PMYgfvESLNVSVAAAIILYEL 158
|
|
| SpoU-like_NHR |
cd18108 |
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) ... |
148-276 |
1.75e-07 |
|
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) confers resistance to the thiazole antibiotic nosiheptide via catalyzing 2'O-methylation of 23S rRNA at the nucleotide A1067. NHR is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349981 Cd Length: 144 Bit Score: 49.40 E-value: 1.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 148 NLGAMFRNAAAFYADA-VLLDETCCDPLYRKALRVSVGSVLSVPYHRGGGAvEMLERLAAAGFAIWSLSPGGETEIRDIP 226
Cdd:cd18108 13 NIGAIVRTSLALGAAGiVLVDSDLATVADRRLLRASRGYVFSLPVVLADRE-EAVAFLRDNDIPLMTLDADGDVPVKELG 91
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 739228538 227 R-AERMALVIGTEGEGlPQSVLSRFHTAR--IAQSPQLDSLNAGTASGLALYQ 276
Cdd:cd18108 92 DrPDRLALVFGSEKGG-PSGLFEEAAAGTvsIPMSSSTESLNVSVSAGIALHE 143
|
|
| SpoU-like_AviRb |
cd18107 |
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes ... |
148-276 |
9.60e-06 |
|
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes methylates the 2'-O atom of U2479 of the 23S ribosomal RNA. AviRb is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349980 Cd Length: 148 Bit Score: 44.69 E-value: 9.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 148 NLGAMFRNAAAFYADAVLLDETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEML-----ERLAAAGFAIWSLSPGGETEI 222
Cdd:cd18107 13 NLGTIIRSADALGAHGLVVTGHAADVYDPKTIRASTGSLFSLPIVRVPSNRELEdwveaRKARGTPLQLVGTDEHGDHQI 92
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 739228538 223 RDIPRAERMALVIGTEGEGLpqSVLSRF---HTARIAQSPQLDSLNAGTASGLALYQ 276
Cdd:cd18107 93 ADHDFTRPTLLLIGNETAGL--SAAWRElcdETVSIPMAGSASSLNAACAASIFLYE 147
|
|
| SpoU-like |
cd18096 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
136-276 |
1.42e-05 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349969 Cd Length: 140 Bit Score: 43.74 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 136 LVLVGCGISNHDNLGAMFRNAAAFYADAVLLdetccdpLYRK--ALRVSVGSVLSVPYHRGGGAVEMLERLAAAGFAIWS 213
Cdd:cd18096 1 LYLVLHNVAKRHNIGTIVRSANAFGVKEVHL-------VGRRkfNPFGAMGTDRHVKFRHFDTLAEAKEYLKERGIRLVG 73
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 739228538 214 LSPGGETE-IRDIPRAERMALVIGTEGEGL-PQSVLSRFHTARIAQ-SPQLDSLNAGTASGLALYQ 276
Cdd:cd18096 74 VEIVPGAEpIETHPFPGDTAFVLGNEGTGLsDEQLAICDGFVYIPQyGSGTASLNVSVAASIVLHH 139
|
|
| SpoU-like_TRM3-like |
cd18091 |
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O) ... |
136-276 |
1.42e-04 |
|
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O)-methyltransferase TRM3 catalyzes the formation of 2'-O-methylguanosine at position 18 (Gm18) in various tRNAs. TRM3 is similar to C-terminal domain of TAR (HIV-1) RNA binding protein 1 (TARBP1), a protein binding to TAR, which functions as a RNA regulatory signal by forming a stable stem-loop structure to which transactivator protein Tat binds. The role of TARBP1 is believed to be to disengage RNA polymerase II from TAR during transcriptional elongation. TRM3 and the C-terminal methyltransferase domain of TARBP1 are members of the SPOUT methyltransferase superfamily.
Pssm-ID: 349964 Cd Length: 145 Bit Score: 40.98 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739228538 136 LVLVGCGISNHDNLGAMFRNAAAFYADAVLL-DETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEMLERLAAAGFAIWSL 214
Cdd:cd18091 1 LIVVASLIDKPPNLGGLCRTCEIFGVSKLVLpNLAVVEDKQFKALSVSAEKWLPIEEVKPEDLLPYLKEKKQEGYTIVGL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 739228538 215 SPGGE-TEIRDIPRAERMALVIGTEGEGLPQSVLSRF-HTARIAQSPQLDSLNAGTASGLALYQ 276
Cdd:cd18091 81 EQTANsVSLHDFQFPKKTVLVLGNEKEGIPAELLSLLdVCVEIPQLGVIRSLNVHVSGAIAIYE 144
|
|
| SpoU-like_TrmL |
cd18094 |
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL ... |
233-276 |
6.48e-04 |
|
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349967 Cd Length: 145 Bit Score: 39.36 E-value: 6.48e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 739228538 233 LVIGTEGEGLPQSVLSRF--HTARIAQSPQLDSLNAGTASGLALYQ 276
Cdd:cd18094 95 LVFGRESTGLPEEILDAFpdRRLRIPMRPKVRSLNLSNSVAIVLYE 140
|
|
| |
