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Conserved domains on  [gi|739563881|ref|WP_037422014|]
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MULTISPECIES: PTS IIA-like nitrogen regulatory protein PtsN [Shewanella]

Protein Classification

PTS sugar transporter subunit IIA( domain architecture ID 76)

PTS sugar transporter subunit IIA is part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active transport system that catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane

CATH:  3.40.930.10
Gene Ontology:  GO:1902495|GO:0009401|GO:0016310|GO:0016301|GO:0008643
PubMed:  11532441|10393270
SCOP:  4001876

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTS_IIA_fru super family cl00163
PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: ...
 1-145 8.25e-59

PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.


The actual alignment was detected with superfamily member PRK10896:

Pssm-ID: 469635 [Multi-domain]  Cd Length: 154  Bit Score: 179.18  E-value: 8.25e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881   1 MELRTILRPECTTCATP-GSKKKVLELISDLAAAQYpTLSSQEIFESLVAREKMGSTGIGNGIAIPHGRL-TDITQPIAI 78
Cdd:PRK10896   7 LQLSSVLNRECTRSRVHcQSKKRALEIISELAAKQL-SLPPQVVFEAILTREKMGSTGIGNGIAIPHGKLeEDTLRAVGV 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 739563881  79 LIKCEEPIAFDAIDKQPVDILFALLVPADQCQQHLSTLSCMAEKLSDKQILKQLRKTHDETELYQVI 145
Cdd:PRK10896  86 FVQLEQPIAFDAIDNQPVDLLFALLVPADQCKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQII 152
 
Name Accession Description Interval E-value
PRK10896 PRK10896
PTS IIA-like nitrogen regulatory protein PtsN;
1-145 8.25e-59

PTS IIA-like nitrogen regulatory protein PtsN;


Pssm-ID: 182818 [Multi-domain]  Cd Length: 154  Bit Score: 179.18  E-value: 8.25e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881   1 MELRTILRPECTTCATP-GSKKKVLELISDLAAAQYpTLSSQEIFESLVAREKMGSTGIGNGIAIPHGRL-TDITQPIAI 78
Cdd:PRK10896   7 LQLSSVLNRECTRSRVHcQSKKRALEIISELAAKQL-SLPPQVVFEAILTREKMGSTGIGNGIAIPHGKLeEDTLRAVGV 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 739563881  79 LIKCEEPIAFDAIDKQPVDILFALLVPADQCQQHLSTLSCMAEKLSDKQILKQLRKTHDETELYQVI 145
Cdd:PRK10896  86 FVQLEQPIAFDAIDNQPVDLLFALLVPADQCKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQII 152
nitro_reg_IIA TIGR01419
PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of ...
 3-145 1.50e-53

PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of about 160 residues closely related to the fructose-specific phosphotransferase (PTS) system IIA component. It is a regulatory protein found only in species with a phosphoenolpyruvate-protein phosphotransferase (enzyme I of PTS systems) and an HPr-like phosphocarrier protein, but not all species have a IIC-like permease. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum. [Signal transduction, PTS]


Pssm-ID: 162350 [Multi-domain]  Cd Length: 145  Bit Score: 165.66  E-value: 1.50e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881    3 LRTILRPECTTCAT-PGSKKKVLELISDLAAAQYPtLSSQEIFESLVAREKMGSTGIGNGIAIPHGRLTDITQPIAILIK 81
Cdd:TIGR01419   2 LIGLLLPEAIRVAMeCGSKKRLLEIISLLAARELS-LPEQDVFECLLAREKLGSTGVGNGIAIPHGRLSGLKQPVGVFIR 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 739563881   82 CEEPIAFDAIDKQPVDILFALLVPADQCQQHLSTLSCMAEKLSDKQILKQLRKTHDEtELYQVI 145
Cdd:TIGR01419  81 LDAPVDFDALDGKPVDLLFALLVPENATAEHLEALSRIARKLSDKTICRRLRAASAE-EIYQIL 143
PtsN COG1762
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate ...
 1-145 5.41e-49

Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 441368 [Multi-domain]  Cd Length: 150  Bit Score: 154.24  E-value: 5.41e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881   1 MELRTILRPECTTC-ATPGSKKKVLELISDLAAAQYPTLSSQEIFESLVAREKMGSTGIGNGIAIPHGRLTDITQPIAIL 79
Cdd:COG1762    1 MMLSDLLTPELILLdLEASSKEEAIEELAELLAEKGYVLDKEEYLEALLEREELGSTGIGPGIAIPHARPEGVKKPGIAV 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 739563881  80 IKCEEPIAFDAIDKQPVDILFALLVPADQCQQHLSTLSCMAEKLSDKQILKQLRKTHDETELYQVI 145
Cdd:COG1762   81 ARLKEPVDFGAMDGEPVDLVFLLAAPEDDSEEHLKLLAELARLLSDEEFREKLLNAKSPEEILELL 146
PTS_IIA_fru cd00211
PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: ...
 19-145 4.66e-39

PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.


Pssm-ID: 238129 [Multi-domain]  Cd Length: 136  Bit Score: 128.45  E-value: 4.66e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881  19 SKKKVLELISDLAAAQypTLSSQEIFESLVAREKMGSTGIGNGIAIPHGRLTDITQPIAILIKCEEPIAFDAIDKQPVDI 98
Cdd:cd00211   14 SKEEAIEELAQLLVAA--GYVEEEYIEALLEREKEGSTGIGNGIAIPHAKSEAVKKPGIAVLRLKEPVDFGSLDGQPVHL 91

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 739563881  99 LFALLVPadQCQQHLSTLSCMAEKLSDKQILKQLRKTHDETELYQVI 145
Cdd:cd00211   92 IFLLAAP--DSNEHLKALSQLARLLSDEEFVEQLLNAQSKEEILALL 136
PTS_EIIA_2 pfam00359
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;
6-145 1.93e-35

Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;


Pssm-ID: 459780 [Multi-domain]  Cd Length: 139  Bit Score: 119.62  E-value: 1.93e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881    6 ILRPECTT-CATPGSKKKVLELISDLAAAQYPTlsSQEIFESLVAREKMGSTGIGNGIAIPHGRLTDITQPIAILIKCEE 84
Cdd:pfam00359   1 LLDKELIFlNLEAKSKEEAIEFLADKLVEAGYV--EPAYLEAILEREKEGSTGIGNGIAIPHARSEAVKKPGIAVLTLKE 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 739563881   85 PIAFDAIDKQPVDILFALLVPADQcQQHLSTLSCMAEKLSDKQILKQLRKTHDETELYQVI 145
Cdd:pfam00359  79 PVDFGSEDGKPVKLIFLLAAPDNE-ASHLKILSQLARLLQDEEFVEKLLKAKDPEEILEIL 138
 
Name Accession Description Interval E-value
PRK10896 PRK10896
PTS IIA-like nitrogen regulatory protein PtsN;
1-145 8.25e-59

PTS IIA-like nitrogen regulatory protein PtsN;


Pssm-ID: 182818 [Multi-domain]  Cd Length: 154  Bit Score: 179.18  E-value: 8.25e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881   1 MELRTILRPECTTCATP-GSKKKVLELISDLAAAQYpTLSSQEIFESLVAREKMGSTGIGNGIAIPHGRL-TDITQPIAI 78
Cdd:PRK10896   7 LQLSSVLNRECTRSRVHcQSKKRALEIISELAAKQL-SLPPQVVFEAILTREKMGSTGIGNGIAIPHGKLeEDTLRAVGV 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 739563881  79 LIKCEEPIAFDAIDKQPVDILFALLVPADQCQQHLSTLSCMAEKLSDKQILKQLRKTHDETELYQVI 145
Cdd:PRK10896  86 FVQLEQPIAFDAIDNQPVDLLFALLVPADQCKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQII 152
nitro_reg_IIA TIGR01419
PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of ...
 3-145 1.50e-53

PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of about 160 residues closely related to the fructose-specific phosphotransferase (PTS) system IIA component. It is a regulatory protein found only in species with a phosphoenolpyruvate-protein phosphotransferase (enzyme I of PTS systems) and an HPr-like phosphocarrier protein, but not all species have a IIC-like permease. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum. [Signal transduction, PTS]


Pssm-ID: 162350 [Multi-domain]  Cd Length: 145  Bit Score: 165.66  E-value: 1.50e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881    3 LRTILRPECTTCAT-PGSKKKVLELISDLAAAQYPtLSSQEIFESLVAREKMGSTGIGNGIAIPHGRLTDITQPIAILIK 81
Cdd:TIGR01419   2 LIGLLLPEAIRVAMeCGSKKRLLEIISLLAARELS-LPEQDVFECLLAREKLGSTGVGNGIAIPHGRLSGLKQPVGVFIR 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 739563881   82 CEEPIAFDAIDKQPVDILFALLVPADQCQQHLSTLSCMAEKLSDKQILKQLRKTHDEtELYQVI 145
Cdd:TIGR01419  81 LDAPVDFDALDGKPVDLLFALLVPENATAEHLEALSRIARKLSDKTICRRLRAASAE-EIYQIL 143
PtsN COG1762
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate ...
 1-145 5.41e-49

Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 441368 [Multi-domain]  Cd Length: 150  Bit Score: 154.24  E-value: 5.41e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881   1 MELRTILRPECTTC-ATPGSKKKVLELISDLAAAQYPTLSSQEIFESLVAREKMGSTGIGNGIAIPHGRLTDITQPIAIL 79
Cdd:COG1762    1 MMLSDLLTPELILLdLEASSKEEAIEELAELLAEKGYVLDKEEYLEALLEREELGSTGIGPGIAIPHARPEGVKKPGIAV 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 739563881  80 IKCEEPIAFDAIDKQPVDILFALLVPADQCQQHLSTLSCMAEKLSDKQILKQLRKTHDETELYQVI 145
Cdd:COG1762   81 ARLKEPVDFGAMDGEPVDLVFLLAAPEDDSEEHLKLLAELARLLSDEEFREKLLNAKSPEEILELL 146
PTS_IIA_fru cd00211
PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: ...
 19-145 4.66e-39

PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.


Pssm-ID: 238129 [Multi-domain]  Cd Length: 136  Bit Score: 128.45  E-value: 4.66e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881  19 SKKKVLELISDLAAAQypTLSSQEIFESLVAREKMGSTGIGNGIAIPHGRLTDITQPIAILIKCEEPIAFDAIDKQPVDI 98
Cdd:cd00211   14 SKEEAIEELAQLLVAA--GYVEEEYIEALLEREKEGSTGIGNGIAIPHAKSEAVKKPGIAVLRLKEPVDFGSLDGQPVHL 91

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 739563881  99 LFALLVPadQCQQHLSTLSCMAEKLSDKQILKQLRKTHDETELYQVI 145
Cdd:cd00211   92 IFLLAAP--DSNEHLKALSQLARLLSDEEFVEQLLNAQSKEEILALL 136
PTS_EIIA_2 pfam00359
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;
6-145 1.93e-35

Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;


Pssm-ID: 459780 [Multi-domain]  Cd Length: 139  Bit Score: 119.62  E-value: 1.93e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881    6 ILRPECTT-CATPGSKKKVLELISDLAAAQYPTlsSQEIFESLVAREKMGSTGIGNGIAIPHGRLTDITQPIAILIKCEE 84
Cdd:pfam00359   1 LLDKELIFlNLEAKSKEEAIEFLADKLVEAGYV--EPAYLEAILEREKEGSTGIGNGIAIPHARSEAVKKPGIAVLTLKE 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 739563881   85 PIAFDAIDKQPVDILFALLVPADQcQQHLSTLSCMAEKLSDKQILKQLRKTHDETELYQVI 145
Cdd:pfam00359  79 PVDFGSEDGKPVKLIFLLAAPDNE-ASHLKILSQLARLLQDEEFVEKLLKAKDPEEILEIL 138
fruA TIGR00848
PTS system, fructose subfamily, IIA component; 4.A.2 The PTS Fructose-Mannitol (Fru) Family ...
 19-132 1.48e-23

PTS system, fructose subfamily, IIA component; 4.A.2 The PTS Fructose-Mannitol (Fru) Family Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several putative PTS permeases of unknown specificities. The fructose permeases of this family phosphorylate fructose on the 1-position. Those of family 4.6 phosphorylate fructose on the 6-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This model is specific for the IIA domain of the fructose PTS transporters. Also similar to the Enzyme IIA Fru subunits of the PTS, but included in TIGR01419 rather than this model, is enzyme IIA Ntr (nitrogen), also called PtsN, found in E. coli and other organisms, which may play a solely regulatory role. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]


Pssm-ID: 273298 [Multi-domain]  Cd Length: 129  Bit Score: 88.87  E-value: 1.48e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881   19 SKKKVLE-LISDLAAAQYPTlSSQEIFESLVAREKMGSTGIGNGIAIPHGRLTDITQP-IAILIKcEEPIAFDAIDKQPV 96
Cdd:TIGR00848  15 SKEDVIKfLANKLLENGYIS-DTEEFLEDLLKREEEGTTGIGDGVAIPHAKSAAVKQPfVAIARL-VKGVDWQSLDGKPV 92

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 739563881   97 DILFALLVPADQCQ-QHLSTLSCMAEKLSDKQILKQL 132
Cdd:TIGR00848  93 KLIFLIAVPKDEAGnTHLKALSQLARLLLNDEFRAKL 129
PRK09913 PRK09913
PTS fructose transporter subunit IIA;
19-145 9.69e-20

PTS fructose transporter subunit IIA;


Pssm-ID: 182141 [Multi-domain]  Cd Length: 148  Bit Score: 79.55  E-value: 9.69e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881  19 SKKKVLELISDLAAAQYPTLSSQEIFESLVAREKMGSTGIGNGIAIPHGRLTDITQPIAILIKCEEPIAFDAIDKQPVDI 98
Cdd:PRK09913  17 GAYSILKQLATIALQNGFITDSHQFLQTLLLREKMHSTGFGSGVAVPHGKSACVKQPFVLFARKAQAIDWQASDGEDVNC 96

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 739563881  99 LFALLVPADQCQQHLSTLSCMAEKLSDKQILKQLRKThDETELYQVI 145
Cdd:PRK09913  97 WICLGVPQSGEEDQVKIIGTLCRKIIHQDFIHQLKQG-DTDQVLALL 142
PRK09765 PRK09765
PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
 1-142 3.43e-16

PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional


Pssm-ID: 182066 [Multi-domain]  Cd Length: 631  Bit Score: 74.00  E-value: 3.43e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881   1 MELRTILRPECTTCATP-GSKKKVLELISDLAAAQYPTLSSQEIFESLVAREKMGSTGIGNGIAIPHGRLTDITQPIAIL 79
Cdd:PRK09765   1 MNLTTLTHRDLLCLNARfTSREEAIHALAQRLAALGKISSTEQFLEEVYRRESLGPTALGEGLAVPHGKTAAVKEAAFAV 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 739563881  80 IKCEEPIAFDAIDK-QPVDILFALLVPADQC-QQHLSTLSCMAEKLSDKQILKQLRKTHDETELY 142
Cdd:PRK09765  81 ATLSEPLQWEGVDGpEAVDLIFLLAIPPNEAgTTHMQLLTALTTRLADDEIRARIQSATTPDELL 145
MtlA2 COG4668
Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and ...
 45-145 4.15e-12

Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism];


Pssm-ID: 443705 [Multi-domain]  Cd Length: 143  Bit Score: 59.40  E-value: 4.15e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881  45 ESLVAREKMGSTGIGNGIAIPHGRLTDITQ----PIAILIkCEEPIAFDaiDKQPVDILFALlvpADQCQQHLSTLSCMA 120
Cdd:COG4668   41 DAMLEREAQVSTYLGNGIAIPHGTNEAKDLvlktGISVLQ-FPDGVDWG--DGNTVYLVIGI---AAKSDEHLEILRQLA 114

                         90       100
                 ....*....|....*....|....*
gi 739563881 121 EKLSDKQILKQLRKTHDETELYQVI 145
Cdd:COG4668  115 RVLSDEENVEKLAKATDAEEILALL 139
PRK11109 PRK11109
fused PTS fructose transporter subunit IIA/HPr protein;
45-147 4.30e-06

fused PTS fructose transporter subunit IIA/HPr protein;


Pssm-ID: 236849 [Multi-domain]  Cd Length: 375  Bit Score: 44.94  E-value: 4.30e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881  45 ESLVAREKMGSTGIGNGIAIPHGRlTD----ITQPIAILIKCEEPIAFDaiDKQPVDILFALLVPADqcqQHLSTLSCMA 120
Cdd:PRK11109  41 DGMLAREQQTSTFLGNGIAIPHGT-TDtrdlVLKTGVQVFQFPQGVTWG--DGQTAYVAIGIAAKSD---EHLGLLRQLT 114

                         90       100
                 ....*....|....*....|....*..
gi 739563881 121 EKLSDKQILKQLRKTHDETELYQVIIG 147
Cdd:PRK11109 115 HVLSDDSVAEQLKSATTAEELRALLMG 141
PRK09665 PRK09665
PTS galactitol transporter subunit IIA;
45-132 1.85e-04

PTS galactitol transporter subunit IIA;


Pssm-ID: 182023 [Multi-domain]  Cd Length: 150  Bit Score: 39.40  E-value: 1.85e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881  45 ESLVAREKMGSTGIG---NGIAIPHGRLTDITQPIAILIKCEEPIAFDAIDKQ---PVDILFALLVpaDQCQQHLSTLSC 118
Cdd:PRK09665  38 QALIAREAEFPTGIMleqHAVAIPHCEAIHAKSPAIYLIRPDKKVHFQQADDDndvAVSLVIALIV--ENPQQQLKLLRC 115

                         90
                 ....*....|....
gi 739563881 119 MAEKLSDKQILKQL 132
Cdd:PRK09665 116 LFGKLQQPDIVETL 129
PRK13779 PRK13779
bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein; Provisional
 9-147 4.35e-04

bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein; Provisional


Pssm-ID: 237502 [Multi-domain]  Cd Length: 503  Bit Score: 39.09  E-value: 4.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881   9 PECTTC--ATPGSKKKVLEL-ISDLAAAQYptlSSQEIFESLVAREKMGSTGIGNGIAIPHGRLT--DITQPIAILIkce 83
Cdd:PRK13779   5 SESNIHlnAQAINKQQAIEMaAAALEQAGN---VENGYLQGMLARELQTSTFLGNGIAIPHGTLDtrHMVKNTGVQI--- 78

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 739563881  84 epIAF-DAIDKQPVDILFALLVPADQCQQHLSTLSCMAEKLSDKQILKQLRKTHDETELYQVIIG 147
Cdd:PRK13779  79 --FQFpQGIEWGEGNIAYVVIGIAARSDEHLSLLRQLTHVLSDEDTAAKLATLTDVKEFRAILMG 141
PRK10372 PRK10372
PTS ascorbate transporter subunit IIA;
58-145 1.21e-03

PTS ascorbate transporter subunit IIA;


Pssm-ID: 182417 [Multi-domain]  Cd Length: 154  Bit Score: 36.88  E-value: 1.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739563881  58 IGNGIAIPHGRLTDITQPIAI-LIKCEEPIAFDAIDKQPVDILFALLVPADQCQQHLSTLScMAEKLSDKQILKQLRKTH 136
Cdd:PRK10372  60 IAPGLAMPHGRPEEGVKKTGFaLVTLKKPLEFNHEDNDPVDILITMAAVDANTHQEVGIMQ-IVNLFEDEANFDRLRACR 138


                 ....*....
gi 739563881 137 DETELYQVI 145
Cdd:PRK10372 139 TEQEVLDLI 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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