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Conserved domains on  [gi|739578275|ref|WP_037436274|]
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MULTISPECIES: DUF4870 domain-containing protein [Shewanella]

Protein Classification

DUF4870 domain-containing protein( domain architecture ID 10007161)

DUF4870 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Tic20a COG3296
Uncharacterized Tic20-related protein, DUF4870 domain [General function prediction only];
3-111 9.36e-40

Uncharacterized Tic20-related protein, DUF4870 domain [General function prediction only];


:

Pssm-ID: 442525  Cd Length: 119  Bit Score: 128.42  E-value: 9.36e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739578275   3 KQERDMGMLVHLASFAGYLIPFGTILGPLIVWLMKREEFEFVDVCGRNCLNFKISMIIYTIISLILIFVGIGLVLVAVLA 82
Cdd:COG3296   10 QEDRTWAMLAHLSGLLGLIIPFGGFIGPLIIWLLKKDRSPFVDEHGKEALNFQITLLIYYIVSGILTLVLIGFLLLIALG 89
                         90       100
                 ....*....|....*....|....*....
gi 739578275  83 IFDVVVTIVAAVKASEGVEYKYPLAIKFL 111
Cdd:COG3296   90 ILNLVFPIIAAIKANNGEPYRYPLTIRFI 118
 
Name Accession Description Interval E-value
Tic20a COG3296
Uncharacterized Tic20-related protein, DUF4870 domain [General function prediction only];
3-111 9.36e-40

Uncharacterized Tic20-related protein, DUF4870 domain [General function prediction only];


Pssm-ID: 442525  Cd Length: 119  Bit Score: 128.42  E-value: 9.36e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739578275   3 KQERDMGMLVHLASFAGYLIPFGTILGPLIVWLMKREEFEFVDVCGRNCLNFKISMIIYTIISLILIFVGIGLVLVAVLA 82
Cdd:COG3296   10 QEDRTWAMLAHLSGLLGLIIPFGGFIGPLIIWLLKKDRSPFVDEHGKEALNFQITLLIYYIVSGILTLVLIGFLLLIALG 89
                         90       100
                 ....*....|....*....|....*....
gi 739578275  83 IFDVVVTIVAAVKASEGVEYKYPLAIKFL 111
Cdd:COG3296   90 ILNLVFPIIAAIKANNGEPYRYPLTIRFI 118
DUF4870 pfam09685
Domain of unknown function (DUF4870);
5-111 5.57e-36

Domain of unknown function (DUF4870);


Pssm-ID: 430752  Cd Length: 107  Bit Score: 118.37  E-value: 5.57e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739578275    5 ERDMGMLVHLASFAGYLIPFGTILGPLIVWLMKREEFEFVDVCGRNCLNFKISMIIYTIISLILIFVGIGLVLVAVLAIF 84
Cdd:pfam09685   1 DRTWAALAHLSGLAGLSFPFGGIIGPLIIWLVKKDRSPFVDEQGKEALNFQISLLIYGIISGVLLLVLIGFLLLIILGIL 80
                          90       100
                  ....*....|....*....|....*..
gi 739578275   85 DVVVTIVAAVKASEGVEYKYPLAIKFL 111
Cdd:pfam09685  81 SLVFPIIAAIKANNGEPYRYPFTIRFI 107
 
Name Accession Description Interval E-value
Tic20a COG3296
Uncharacterized Tic20-related protein, DUF4870 domain [General function prediction only];
3-111 9.36e-40

Uncharacterized Tic20-related protein, DUF4870 domain [General function prediction only];


Pssm-ID: 442525  Cd Length: 119  Bit Score: 128.42  E-value: 9.36e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739578275   3 KQERDMGMLVHLASFAGYLIPFGTILGPLIVWLMKREEFEFVDVCGRNCLNFKISMIIYTIISLILIFVGIGLVLVAVLA 82
Cdd:COG3296   10 QEDRTWAMLAHLSGLLGLIIPFGGFIGPLIIWLLKKDRSPFVDEHGKEALNFQITLLIYYIVSGILTLVLIGFLLLIALG 89
                         90       100
                 ....*....|....*....|....*....
gi 739578275  83 IFDVVVTIVAAVKASEGVEYKYPLAIKFL 111
Cdd:COG3296   90 ILNLVFPIIAAIKANNGEPYRYPLTIRFI 118
DUF4870 pfam09685
Domain of unknown function (DUF4870);
5-111 5.57e-36

Domain of unknown function (DUF4870);


Pssm-ID: 430752  Cd Length: 107  Bit Score: 118.37  E-value: 5.57e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739578275    5 ERDMGMLVHLASFAGYLIPFGTILGPLIVWLMKREEFEFVDVCGRNCLNFKISMIIYTIISLILIFVGIGLVLVAVLAIF 84
Cdd:pfam09685   1 DRTWAALAHLSGLAGLSFPFGGIIGPLIIWLVKKDRSPFVDEQGKEALNFQISLLIYGIISGVLLLVLIGFLLLIILGIL 80
                          90       100
                  ....*....|....*....|....*..
gi 739578275   85 DVVVTIVAAVKASEGVEYKYPLAIKFL 111
Cdd:pfam09685  81 SLVFPIIAAIKANNGEPYRYPFTIRFI 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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