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Conserved domains on  [gi|739585934|ref|WP_037443701|]
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LytTR family DNA-binding domain-containing protein [Pedobacter antarcticus]

Protein Classification

LytTR family DNA-binding domain-containing protein( domain architecture ID 10657179)

LytTR family DNA-binding domain-containing protein similar to Streptococcus LytTR family transcriptional regulator HdrR

CATH:  2.40.50.1020
Gene Ontology:  GO:0003677
PubMed:  16740923|12034833
SCOP:  4004734

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LytTR smart00850
LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional ...
 210-293 1.33e-09

LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.


:

Pssm-ID: 197918 [Multi-domain]  Cd Length: 96  Bit Score: 54.50  E-value: 1.33e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739585934   210 LFARAEGNYIEITTRNsdglKKELKRISLKQFELQISGiGNLIRCHRTYLINIGQVNHVAGNSQG-YLLSFQGTEEtVPV 288
Cdd:smart00850  12 LYIEAEGNYVTVHTKD----GTYLVRGTLKELEERLDP-DNFFRIHRSYIVNLDHIKEIEPWFNGtYLLILKNGEE-VPV 85


                   ....*
gi 739585934   289 SRNNL 293
Cdd:smart00850  86 SRRYL 90
 
Name Accession Description Interval E-value
LytTR smart00850
LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional ...
 210-293 1.33e-09

LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.


Pssm-ID: 197918 [Multi-domain]  Cd Length: 96  Bit Score: 54.50  E-value: 1.33e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739585934   210 LFARAEGNYIEITTRNsdglKKELKRISLKQFELQISGiGNLIRCHRTYLINIGQVNHVAGNSQG-YLLSFQGTEEtVPV 288
Cdd:smart00850  12 LYIEAEGNYVTVHTKD----GTYLVRGTLKELEERLDP-DNFFRIHRSYIVNLDHIKEIEPWFNGtYLLILKNGEE-VPV 85


                   ....*
gi 739585934   289 SRNNL 293
Cdd:smart00850  86 SRRYL 90
LytT COG3279
DNA-binding response regulator, LytR/AlgR family [Transcription, Signal transduction ...
 210-296 2.80e-09

DNA-binding response regulator, LytR/AlgR family [Transcription, Signal transduction mechanisms];


Pssm-ID: 442510 [Multi-domain]  Cd Length: 235  Bit Score: 56.36  E-value: 2.80e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739585934 210 LFARAEGNYIEITTRNsdglKKELKRISLKQFELQISGiGNLIRCHRTYLINIGQVNHVAGNSQGYLLsFQGTEEtVPVS 289
Cdd:COG3279  153 LYIEAEGNYVKIHTKD----KKYLVRKTLKELEEKLPP-KQFFRVHRSYIVNLDKIKEIEKNFNGEVV-LKNGEE-IPVS 225


                 ....*..
gi 739585934 290 RNNLGIF 296
Cdd:COG3279  226 RRYKKEF 232
LytTR pfam04397
LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional ...
 202-293 4.88e-08

LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.


Pssm-ID: 427920 [Multi-domain]  Cd Length: 98  Bit Score: 49.90  E-value: 4.88e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739585934  202 FNFNPSAFLFARAEGNYIEITTRNsdglKKELKRISLKQFELQISGIgNLIRCHRTYLINIGQVNHV-AGNSQGYLLSFQ 280
Cdd:pfam04397   4 ILVPIDDILYIEAEDKYVTIHTAN----GEYLTRGTLKELEEKLPPD-GFFRCHRSYLVNLNKIKEIdPDFNGTYELTLK 78

                          90
                  ....*....|...
gi 739585934  281 GtEETVPVSRNNL 293
Cdd:pfam04397  79 N-GEKIPVSRRYL 90
PRK11697 PRK11697
two-component system response regulator BtsR;
251-303 1.37e-03

two-component system response regulator BtsR;


Pssm-ID: 236956 [Multi-domain]  Cd Length: 238  Bit Score: 39.44  E-value: 1.37e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 739585934 251 LIRCHRTYLINIGQVNHVA--GNSQGYLLSFQGteETVPVSRnnlgifdRLYKEL 303
Cdd:PRK11697 186 LLRCHRQYLVNPAAIQEIRllDNGQAEIITRSG--HTVPVSR-------RYLKSL 231
 
Name Accession Description Interval E-value
LytTR smart00850
LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional ...
 210-293 1.33e-09

LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.


Pssm-ID: 197918 [Multi-domain]  Cd Length: 96  Bit Score: 54.50  E-value: 1.33e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739585934   210 LFARAEGNYIEITTRNsdglKKELKRISLKQFELQISGiGNLIRCHRTYLINIGQVNHVAGNSQG-YLLSFQGTEEtVPV 288
Cdd:smart00850  12 LYIEAEGNYVTVHTKD----GTYLVRGTLKELEERLDP-DNFFRIHRSYIVNLDHIKEIEPWFNGtYLLILKNGEE-VPV 85


                   ....*
gi 739585934   289 SRNNL 293
Cdd:smart00850  86 SRRYL 90
LytT COG3279
DNA-binding response regulator, LytR/AlgR family [Transcription, Signal transduction ...
 210-296 2.80e-09

DNA-binding response regulator, LytR/AlgR family [Transcription, Signal transduction mechanisms];


Pssm-ID: 442510 [Multi-domain]  Cd Length: 235  Bit Score: 56.36  E-value: 2.80e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739585934 210 LFARAEGNYIEITTRNsdglKKELKRISLKQFELQISGiGNLIRCHRTYLINIGQVNHVAGNSQGYLLsFQGTEEtVPVS 289
Cdd:COG3279  153 LYIEAEGNYVKIHTKD----KKYLVRKTLKELEEKLPP-KQFFRVHRSYIVNLDKIKEIEKNFNGEVV-LKNGEE-IPVS 225


                 ....*..
gi 739585934 290 RNNLGIF 296
Cdd:COG3279  226 RRYKKEF 232
LytTR pfam04397
LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional ...
 202-293 4.88e-08

LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.


Pssm-ID: 427920 [Multi-domain]  Cd Length: 98  Bit Score: 49.90  E-value: 4.88e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739585934  202 FNFNPSAFLFARAEGNYIEITTRNsdglKKELKRISLKQFELQISGIgNLIRCHRTYLINIGQVNHV-AGNSQGYLLSFQ 280
Cdd:pfam04397   4 ILVPIDDILYIEAEDKYVTIHTAN----GEYLTRGTLKELEEKLPPD-GFFRCHRSYLVNLNKIKEIdPDFNGTYELTLK 78

                          90
                  ....*....|...
gi 739585934  281 GtEETVPVSRNNL 293
Cdd:pfam04397  79 N-GEKIPVSRRYL 90
PRK11697 PRK11697
two-component system response regulator BtsR;
251-303 1.37e-03

two-component system response regulator BtsR;


Pssm-ID: 236956 [Multi-domain]  Cd Length: 238  Bit Score: 39.44  E-value: 1.37e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 739585934 251 LIRCHRTYLINIGQVNHVA--GNSQGYLLSFQGteETVPVSRnnlgifdRLYKEL 303
Cdd:PRK11697 186 LLRCHRQYLVNPAAIQEIRllDNGQAEIITRSG--HTVPVSR-------RYLKSL 231
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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