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Conserved domains on  [gi|740638618|ref|WP_038424108|]
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ABC transporter permease [Klebsiella michiganensis]

Protein Classification

ABC transporter permease( domain architecture ID 10003065)

ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of substrates including gylcine betaine, choline, and carnitine

Gene Ontology:  GO:0140359|GO:0042626|GO:0055085|GO:0016020
PubMed:  25750732|24638992|31571164|27273632|26517919|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 1-219 5.00e-55

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


:

Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 174.86  E-value: 5.00e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618   1 MLTWFMDpthWFGE--GGIFPLLAQHISYSAVALAIAFIIAFPVGCYTGHTGKGEGLLIGTTNALRSLPSFGLIILLvil 78
Cdd:COG1174    1 MNLSLIE---WLADnrDGILALLLEHLLLVLLALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALL--- 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618  79 lsgefesdMAFI----LPCILVLVALALPPIALGVHAGIRSLDPYVLDAARGMGMTRLQILLQVELPCALPLILSGVRSA 154
Cdd:COG1174   75 --------IPLLgigpAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTA 146

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 740638618 155 TLQIISTATIAAYVSLGGFGRLIIDGRAANDFSQMIAGAMLVALLALLIDCLFSFSQKIVVSPGI 219
Cdd:COG1174  147 AVQNIGTATLAALIGAGGLGDLIFDGLQLNNTALILAGAILVALLALLVDLLLALLERLLTPRGL 211
 
Name Accession Description Interval E-value
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 1-219 5.00e-55

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 174.86  E-value: 5.00e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618   1 MLTWFMDpthWFGE--GGIFPLLAQHISYSAVALAIAFIIAFPVGCYTGHTGKGEGLLIGTTNALRSLPSFGLIILLvil 78
Cdd:COG1174    1 MNLSLIE---WLADnrDGILALLLEHLLLVLLALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALL--- 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618  79 lsgefesdMAFI----LPCILVLVALALPPIALGVHAGIRSLDPYVLDAARGMGMTRLQILLQVELPCALPLILSGVRSA 154
Cdd:COG1174   75 --------IPLLgigpAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTA 146

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 740638618 155 TLQIISTATIAAYVSLGGFGRLIIDGRAANDFSQMIAGAMLVALLALLIDCLFSFSQKIVVSPGI 219
Cdd:COG1174  147 AVQNIGTATLAALIGAGGLGDLIFDGLQLNNTALILAGAILVALLALLVDLLLALLERLLTPRGL 211
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 21-178 1.01e-08

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 53.05  E-value: 1.01e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618  21 LAQHISYSAVALAIAFIIAFPVGCYTG-HTGKGEGLLIGTTNALRSLPSF--GLIILLVILLSGEFESDMAFILPCILVL 97
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILArKRGKLDRLLRRIIDLLLSLPSLvlGLLLVLLFGVLLGWGILPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618  98 VALALPPIALGVHAGIRSLDPYVLDAARGMGMTRLQILLQVELPCALPLILSGVRSATLQIISTATIAAYVSLGGFGRLI 177
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160


                 .
gi 740638618 178 I 178
Cdd:cd06261  161 T 161
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
92-180 1.91e-08

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 53.56  E-value: 1.91e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618  92 PCILVLVALALPPIALGVHAGIRSLDPYVLDAARGMGMTRLQILLQVELPCALPLILSGVRSATLQIISTATIAAYVSLG 171
Cdd:PRK10952 210 PGVVVTIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVG 289


                 ....*....
gi 740638618 172 GFGRLIIDG 180
Cdd:PRK10952 290 GLGQMVLRG 298
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 90-215 3.68e-07

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 48.83  E-value: 3.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618   90 ILPCILVLVALALPPIALGVHAGIRSLDPYVLDAARGMGMTRLQILLQVELPCALPLILSGVRSATLQIISTATIAAYV- 168
Cdd:pfam00528  52 ILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLg 131

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 740638618  169 SLGGFGRLIIDGRAANDFSQMIAGAMLVALLALLIDCLFSFSQKIVV 215
Cdd:pfam00528 132 SWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLD 178
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 28-177 6.40e-04

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 39.45  E-value: 6.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618  28 SAVALAIAFIIAFPVGCYTGHTG-KGEGLLIGTTNALRSLPSF--GLIILLVILLSGEFESDMAFILPCILVL--VALAL 102
Cdd:NF038017   5 SGTATLIAALIGIPLGALLALRRfPGRRLVISLLNTLMGLPPVvvGLIVYLLLSRSGPLGFLGLLYTPTAMIIaqAVLAL 84

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 740638618 103 PPIALGVHAGIRSLDPYVLDAARGMGMTRLQillqvelpcALPLILSGVRSATLqiisTATIAayvslgGFGRLI 177
Cdd:NF038017  85 PIVAGLTLAAVQGLDPELRLQILSLGATRWQ---------ALWTLLKEARFALL----AAVLA------GFGRAI 140
 
Name Accession Description Interval E-value
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 1-219 5.00e-55

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 174.86  E-value: 5.00e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618   1 MLTWFMDpthWFGE--GGIFPLLAQHISYSAVALAIAFIIAFPVGCYTGHTGKGEGLLIGTTNALRSLPSFGLIILLvil 78
Cdd:COG1174    1 MNLSLIE---WLADnrDGILALLLEHLLLVLLALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALL--- 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618  79 lsgefesdMAFI----LPCILVLVALALPPIALGVHAGIRSLDPYVLDAARGMGMTRLQILLQVELPCALPLILSGVRSA 154
Cdd:COG1174   75 --------IPLLgigpAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTA 146

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 740638618 155 TLQIISTATIAAYVSLGGFGRLIIDGRAANDFSQMIAGAMLVALLALLIDCLFSFSQKIVVSPGI 219
Cdd:COG1174  147 AVQNIGTATLAALIGAGGLGDLIFDGLQLNNTALILAGAILVALLALLVDLLLALLERLLTPRGL 211
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 12-190 4.08e-14

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 69.02  E-value: 4.08e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618  12 FGEGGIFPLLAQHISYS----AVALAIAFIIAFPVGCYTGHTGKGEGLLIGTTNALRSLPS----------FGLIillvi 77
Cdd:COG0600   50 LVELLASGELWEHLLASllrvLLGFALAALLGVPLGLLLGLSRLLRRLLDPLLVFLRPIPPlalapllilwFGIG----- 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618  78 llsgefesdmafILPCILVLVALALPPIALGVHAGIRSLDPYVLDAARGMGMTRLQILLQVELPCALPLILSGVRSATLQ 157
Cdd:COG0600  125 ------------EASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGL 192

                        170       180       190
                 ....*....|....*....|....*....|....
gi 740638618 158 IISTATIAAYVSLG-GFGRLIIDGRAANDFSQMI 190
Cdd:COG0600  193 AWIGLVVAELLGASsGLGYLILDARQLLDTDLVF 226
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 21-178 1.01e-08

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 53.05  E-value: 1.01e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618  21 LAQHISYSAVALAIAFIIAFPVGCYTG-HTGKGEGLLIGTTNALRSLPSF--GLIILLVILLSGEFESDMAFILPCILVL 97
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILArKRGKLDRLLRRIIDLLLSLPSLvlGLLLVLLFGVLLGWGILPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618  98 VALALPPIALGVHAGIRSLDPYVLDAARGMGMTRLQILLQVELPCALPLILSGVRSATLQIISTATIAAYVSLGGFGRLI 177
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160


                 .
gi 740638618 178 I 178
Cdd:cd06261  161 T 161
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
92-180 1.91e-08

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 53.56  E-value: 1.91e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618  92 PCILVLVALALPPIALGVHAGIRSLDPYVLDAARGMGMTRLQILLQVELPCALPLILSGVRSATLQIISTATIAAYVSLG 171
Cdd:PRK10952 210 PGVVVTIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVG 289


                 ....*....
gi 740638618 172 GFGRLIIDG 180
Cdd:PRK10952 290 GLGQMVLRG 298
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
21-181 1.78e-07

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 50.32  E-value: 1.78e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618  21 LAQHISYSA----VALAIAFIIAFPVGCYTGHTGKGEGLLIGTTNALRSLPSFGLIILLVILLsGEFESDMAFilpcilv 96
Cdd:PRK11365  58 LWQHLAISSwralIGFSIGGSLGLILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWF-GIDESAKIF------- 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618  97 LVALA-LPPIALGVHAGIRSLDPYVLDAARGMGMTRLQILLQVELPCALPLILSGVRSAT----LQIISTATIAAYvslG 171
Cdd:PRK11365 130 LVALGtLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALglmwLTLIVAETISAN---S 206

                        170
                 ....*....|
gi 740638618 172 GFGRLIIDGR 181
Cdd:PRK11365 207 GIGYLAMNAR 216
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 90-215 3.68e-07

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 48.83  E-value: 3.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618   90 ILPCILVLVALALPPIALGVHAGIRSLDPYVLDAARGMGMTRLQILLQVELPCALPLILSGVRSATLQIISTATIAAYV- 168
Cdd:pfam00528  52 ILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLg 131

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 740638618  169 SLGGFGRLIIDGRAANDFSQMIAGAMLVALLALLIDCLFSFSQKIVV 215
Cdd:pfam00528 132 SWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLD 178
PRK10160 PRK10160
taurine ABC transporter permease TauC;
5-152 2.93e-06

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 46.70  E-value: 2.93e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618   5 FMDPTHWfgeggifpllaQHISYS----AVALAIAFIIAFPVGCYTGHTGKGEGLLIGTTNALRSLPSFGLIILLVILLS 80
Cdd:PRK10160  71 FMDATLW-----------QHLAASltriVLALLAAVVIGIPVGIAMGLSPTVRGILDPLIELYRPVPPLAYLPLMVIWFG 139

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 740638618  81 -GEfesdmafiLPCILVLVALALPPIALGVHAGIRSLDPYVLDAARGMGMTRLQILLQVELPCALPLILSGVR 152
Cdd:PRK10160 140 iGE--------TSKILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLR 204
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
94-151 1.08e-04

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 42.46  E-value: 1.08e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 740638618  94 ILVLVALALPPIALGVHAGIRSLDPYVLDAARGMGMTRLQILLQVELPCALPLILSGV 151
Cdd:COG1178  143 ILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGA 200
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 98-150 4.39e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 40.35  E-value: 4.39e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 740638618  98 VALALPPIALGVHAGIRSLDPYVLDAARGMGMTRLQILLQVELPCALPLILSG 150
Cdd:PRK09500 135 ITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAG 187
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 28-177 6.40e-04

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 39.45  E-value: 6.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740638618  28 SAVALAIAFIIAFPVGCYTGHTG-KGEGLLIGTTNALRSLPSF--GLIILLVILLSGEFESDMAFILPCILVL--VALAL 102
Cdd:NF038017   5 SGTATLIAALIGIPLGALLALRRfPGRRLVISLLNTLMGLPPVvvGLIVYLLLSRSGPLGFLGLLYTPTAMIIaqAVLAL 84

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 740638618 103 PPIALGVHAGIRSLDPYVLDAARGMGMTRLQillqvelpcALPLILSGVRSATLqiisTATIAayvslgGFGRLI 177
Cdd:NF038017  85 PIVAGLTLAAVQGLDPELRLQILSLGATRWQ---------ALWTLLKEARFALL----AAVLA------GFGRAI 140
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
94-172 4.61e-03

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 37.02  E-value: 4.61e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 740638618  94 ILVLVALALPPIALGVHAGIRSLDPYVLDAARGMGMTRLQILLQVELPCALPlilSGVRSATLQIIstaTIAAYVSLGG 172
Cdd:PRK10782  93 IVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALP---GLVNAATITLI---TLVGYSAMGG 165
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
94-150 5.85e-03

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 37.45  E-value: 5.85e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 740638618  94 ILVLVALALPPIALGVHAGIRSLDPYVLDAARGMGMTRLQILLQVELPCALPLILSG 150
Cdd:COG1178  415 VLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAA 471
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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