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Conserved domains on  [gi|740639290|ref|WP_038424776|]
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MULTISPECIES: DUF5107 domain-containing protein [Klebsiella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5107 super family cl28815
Domain of unknown function (DUF5107); This family is found in range of different bacterial ...
 41-344 7.95e-69

Domain of unknown function (DUF5107); This family is found in range of different bacterial species. In many proteins it lies N-terminal to a TPR-repeat region at the C-terminus.


The actual alignment was detected with superfamily member pfam17128:

Pssm-ID: 407262  Cd Length: 300  Bit Score: 232.85  E-value: 7.95e-69
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290    41 VYPYGVIDTLTGEREMRDYQAVWMENDFIRIMLLPELGGRIHRAYDKVKQRDFVYYNEVVKPALVGLLGPWISGGIEFNW 120
Cdd:pfam17128    6 VYPY*VFSGYSNKPVPKRWR*ISLENEYLKAIVLPDLGGKVISATEKSSGEEFLYRNDVIKFRRIGPRGPWTAGGIEVNF 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290   121 PQHHRPTTFMPVDFSIQRGENGVqTVWMGEAEPMRGLQVMTGFTLYPDRALIEITGKVFNgnATPRH--FLWWANPAVKG 198
Cdd:pfam17128   86 PIGHSPTTASPVDYQIDHTADST-TVTVGERDLHSGTQWRVEISLPKDKACLEQRVVWYN--PGPLRqpYYSWSNAALPC 162

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290   199 GDAHQSVFPPDVTAVFDHGKRDVSAFPIATgtyykvdysAGVDISRYKNVPVPTSYMAEKSDYDFVGAYHHDERGGLLHV 278
Cdd:pfam17128  163 ADDTQFDFPGGTKTEHSHHEGDIKEWPVG*---------TGLDRSFYKNNNVGGGKSAHGSRENAFGGYTPSLGSGFGHI 233

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 740639290   279 ADHHVSPGKKQWSWGYGDFGQAWDRNLTDENGPYIELMTGVYTDNQPDFTWLAPYEEKVFVQNFLP 344
Cdd:pfam17128  234 ADYSDTPGKKLWSWGRARDGKIWEDLLTDDDGQYVEIQAGPILNQSIKLELLRPGESKNHTEYWIP 299
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 609-816 3.91e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 67.33  E-value: 3.91e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  609 ALALADSGRAKEAQAYIVLCLEQYPLSYPLHCAR-WMIAPGDEARASLLRVTGRRGINGSLLAGWLLSIGQKQAAKEVLE 687
Cdd:COG3914    23 AAELALAAELEAAALAAALGLALLLLAALAEAAAaALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYR 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  688 -VLDCQEALPMLWrASLSDDANKRQRLiAEAERCHvRKVrfpntldevqmLQTLSDSAFARYLLGCFWYSKRRYEEAVSC 766
Cdd:COG3914   103 rALALNPDNAEAL-FNLGNLLLALGRL-EEALAAL-RRA-----------LALNPDFAEAYLNLGEALRRLGRLEEAIAA 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 740639290  767 WRETLEKSPDYAPAHRLLGVyAWNKQQDAAQALAYLQRAVELEPENARFL 816
Cdd:COG3914   169 LRRALELDPDNAEALNNLGN-ALQDLGRLEEAIAAYRRALELDPDNADAH 217
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
742-1015 3.57e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.56  E-value: 3.57e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  742 DSAFARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAPAHRLLGVyAWNKQQDAAQALAYLQRAVELEPENARFLFELDF 821
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGL-AYLRLGRYEEALADYEQALELDPDDAEALNNLGL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  822 LKKSLGTPvNERLETLaaRKAVVLKRDDLTAellslwnaaghyadaaailgtrvfhpweggegkvtgqylLNQLHRALQL 901
Cdd:COG0457    85 ALQALGRY-EEALEDY--DKALELDPDDAEA---------------------------------------LYNLGLALLE 122

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  902 IERkaFTQAARCLNEALRY-PDNLgegrlpgqtdnDIWYLLGYCAEQTGDAHRAAEYYQLALQGGSTLDAGRYYNDQPAD 980
Cdd:COG0457   123 LGR--YDEAIEAYERALELdPDDA-----------DALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALA 189

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 740639290  981 YLFWQGIALRKSGNPAQAEQNFQNFIAWARQHRDD 1015
Cdd:COG0457   190 LAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 425-670 4.53e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.39  E-value: 4.53e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  425 ADNQPLLDYQEHITQQTPLPEPACAPAMPKEIHNGDELYFIGQHLEQYNHASRY--AADYYRRAIALDPQDYRNNVALGT 502
Cdd:COG3914    41 LGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYeeALALYRRALALNPDNAEALFNLGN 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  503 LAFNCADWGLAEQCARAALlrahrlNKNPRDGEASMLLGSALERQGDEAGAWDCYYKAswsgncrdaawwalarlamkrg 582
Cdd:COG3914   121 LLLALGRLEEALAALRRAL------ALNPDFAEAYLNLGEALRRLGRLEEAIAALRRA---------------------- 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  583 dtadalekvntsLQFNASNHLAMGLKALALADSGRAKEAQAYIVLCLEQYP-----LSYPLHCAR----WMIAPGDEARA 653
Cdd:COG3914   173 ------------LELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPdnadaHSNLLFALRqacdWEVYDRFEELL 240

                         250
                  ....*....|....*..
gi 740639290  654 SLLRVTGRRGINGSLLA 670
Cdd:COG3914   241 AALARGPSELSPFALLY 257
 
Name Accession Description Interval E-value
DUF5107 pfam17128
Domain of unknown function (DUF5107); This family is found in range of different bacterial ...
 41-344 7.95e-69

Domain of unknown function (DUF5107); This family is found in range of different bacterial species. In many proteins it lies N-terminal to a TPR-repeat region at the C-terminus.


Pssm-ID: 407262  Cd Length: 300  Bit Score: 232.85  E-value: 7.95e-69
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290    41 VYPYGVIDTLTGEREMRDYQAVWMENDFIRIMLLPELGGRIHRAYDKVKQRDFVYYNEVVKPALVGLLGPWISGGIEFNW 120
Cdd:pfam17128    6 VYPY*VFSGYSNKPVPKRWR*ISLENEYLKAIVLPDLGGKVISATEKSSGEEFLYRNDVIKFRRIGPRGPWTAGGIEVNF 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290   121 PQHHRPTTFMPVDFSIQRGENGVqTVWMGEAEPMRGLQVMTGFTLYPDRALIEITGKVFNgnATPRH--FLWWANPAVKG 198
Cdd:pfam17128   86 PIGHSPTTASPVDYQIDHTADST-TVTVGERDLHSGTQWRVEISLPKDKACLEQRVVWYN--PGPLRqpYYSWSNAALPC 162

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290   199 GDAHQSVFPPDVTAVFDHGKRDVSAFPIATgtyykvdysAGVDISRYKNVPVPTSYMAEKSDYDFVGAYHHDERGGLLHV 278
Cdd:pfam17128  163 ADDTQFDFPGGTKTEHSHHEGDIKEWPVG*---------TGLDRSFYKNNNVGGGKSAHGSRENAFGGYTPSLGSGFGHI 233

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 740639290   279 ADHHVSPGKKQWSWGYGDFGQAWDRNLTDENGPYIELMTGVYTDNQPDFTWLAPYEEKVFVQNFLP 344
Cdd:pfam17128  234 ADYSDTPGKKLWSWGRARDGKIWEDLLTDDDGQYVEIQAGPILNQSIKLELLRPGESKNHTEYWIP 299
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 609-816 3.91e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 67.33  E-value: 3.91e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  609 ALALADSGRAKEAQAYIVLCLEQYPLSYPLHCAR-WMIAPGDEARASLLRVTGRRGINGSLLAGWLLSIGQKQAAKEVLE 687
Cdd:COG3914    23 AAELALAAELEAAALAAALGLALLLLAALAEAAAaALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYR 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  688 -VLDCQEALPMLWrASLSDDANKRQRLiAEAERCHvRKVrfpntldevqmLQTLSDSAFARYLLGCFWYSKRRYEEAVSC 766
Cdd:COG3914   103 rALALNPDNAEAL-FNLGNLLLALGRL-EEALAAL-RRA-----------LALNPDFAEAYLNLGEALRRLGRLEEAIAA 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 740639290  767 WRETLEKSPDYAPAHRLLGVyAWNKQQDAAQALAYLQRAVELEPENARFL 816
Cdd:COG3914   169 LRRALELDPDNAEALNNLGN-ALQDLGRLEEAIAAYRRALELDPDNADAH 217
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
742-1015 3.57e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.56  E-value: 3.57e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  742 DSAFARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAPAHRLLGVyAWNKQQDAAQALAYLQRAVELEPENARFLFELDF 821
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGL-AYLRLGRYEEALADYEQALELDPDDAEALNNLGL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  822 LKKSLGTPvNERLETLaaRKAVVLKRDDLTAellslwnaaghyadaaailgtrvfhpweggegkvtgqylLNQLHRALQL 901
Cdd:COG0457    85 ALQALGRY-EEALEDY--DKALELDPDDAEA---------------------------------------LYNLGLALLE 122

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  902 IERkaFTQAARCLNEALRY-PDNLgegrlpgqtdnDIWYLLGYCAEQTGDAHRAAEYYQLALQGGSTLDAGRYYNDQPAD 980
Cdd:COG0457   123 LGR--YDEAIEAYERALELdPDDA-----------DALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALA 189

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 740639290  981 YLFWQGIALRKSGNPAQAEQNFQNFIAWARQHRDD 1015
Cdd:COG0457   190 LAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 425-670 4.53e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.39  E-value: 4.53e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  425 ADNQPLLDYQEHITQQTPLPEPACAPAMPKEIHNGDELYFIGQHLEQYNHASRY--AADYYRRAIALDPQDYRNNVALGT 502
Cdd:COG3914    41 LGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYeeALALYRRALALNPDNAEALFNLGN 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  503 LAFNCADWGLAEQCARAALlrahrlNKNPRDGEASMLLGSALERQGDEAGAWDCYYKAswsgncrdaawwalarlamkrg 582
Cdd:COG3914   121 LLLALGRLEEALAALRRAL------ALNPDFAEAYLNLGEALRRLGRLEEAIAALRRA---------------------- 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  583 dtadalekvntsLQFNASNHLAMGLKALALADSGRAKEAQAYIVLCLEQYP-----LSYPLHCAR----WMIAPGDEARA 653
Cdd:COG3914   173 ------------LELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPdnadaHSNLLFALRqacdWEVYDRFEELL 240

                         250
                  ....*....|....*..
gi 740639290  654 SLLRVTGRRGINGSLLA 670
Cdd:COG3914   241 AALARGPSELSPFALLY 257
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 479-816 1.74e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 55.47  E-value: 1.74e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290   479 AADYYRRAIALDPQDYRNNVALG-------------TLAFNCADWGLAEQCARAALLRAHRLNKNPRDGEASmlLGSALE 545
Cdd:TIGR02917  552 AVAWLEKAAELNPQEIEPALALAqyylgkgqlkkalAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSS--FKKLLA 629

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290   546 RQGDEAGAWDCYYKASWSGNcrdaawwalarlamkrgDTADALEKVNTSLQFNASNHLAMGLKALALADSGRAKEAQAYI 625
Cdd:TIGR02917  630 LQPDSALALLLLADAYAVMK-----------------NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290   626 VLCLEQYPLSYPLHC--ARWMIAPGDEARASL-LRVTGRRGINGSL---LAGWLLSIGQKQAAKEVLEvldcqealpmlw 699
Cdd:TIGR02917  693 KSLQKQHPKAALGFEleGDLYLRQKDYPAAIQaYRKALKRAPSSQNaikLHRALLASGNTAEAVKTLE------------ 760

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290   700 rASLSDDANkrqrliaeaerchvrkvrfpntldevqmlqtlsdSAFARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAP 779
Cdd:TIGR02917  761 -AWLKTHPN----------------------------------DAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAV 805

                          330       340       350
                   ....*....|....*....|....*....|....*...
gi 740639290   780 AHRLLgvyAW-NKQQDAAQALAYLQRAVELEPENARFL 816
Cdd:TIGR02917  806 VLNNL---AWlYLELKDPRALEYAERALKLAPNIPAIL 840
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 897-1078 9.29e-04

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 43.53  E-value: 9.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  897 RALQLIERKAFTQAARCLNEALR-YPDnlgegrlpgqtDNDIWYLLGYCAEQTGDAHRAAEYYQLALQggstLDAGRYYN 975
Cdd:PRK11447  275 QGLAAVDSGQGGKAIPELQQAVRaNPK-----------DSEALGALGQAYSQQGDRARAVAQFEKALA----LDPHSSNR 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  976 DQPADYL----FW----QGIALRKSGNPAQAEQNFQNfiawARQHRDDvpqaDFFAVslpdLVVLDVSAQEqhqqhclfi 1047
Cdd:PRK11447  340 DKWESLLkvnrYWlliqQGDAALKANNLAQAERLYQQ----ARQVDNT----DSYAV----LGLGDVAMAR--------- 398

                         170       180       190
                  ....*....|....*....|....*....|.
gi 740639290 1048 ealghlglGNVSASQQAMQRLLQLNPAYDKA 1078
Cdd:PRK11447  399 --------KDYAAAERYYQQALRMDPGNTNA 421
COG3899 COG3899
Predicted ATPase [General function prediction only];
474-963 1.45e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 42.92  E-value: 1.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  474 HASRYAADYYRRAIALDPQDYRNNvalgtlafncADWGLAEQCARAALLRAHRlnknprdGEASMLLGSALERQGDEAGA 553
Cdd:COG3899   719 GAYAEALRYLERALELLPPDPEEE----------YRLALLLELAEALYLAGRF-------EEAEALLERALAARALAALA 781

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  554 WDCYykaswsGNCRDAAWWALARLAMKRGDTADALEKVNTSLQ----FNASNHLAMGL--KALALADSGRAKEAQAYIVL 627
Cdd:COG3899   782 ALRH------GNPPASARAYANLGLLLLGDYEEAYEFGELALAlaerLGDRRLEARALfnLGFILHWLGPLREALELLRE 855

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  628 CLEQYPLSYPLHCARWMIAPGDEARASLLRVTGRRGINGSLLAGWLLSIGQKQAAKEVLEVLDCQEALPMLWRASLSDDA 707
Cdd:COG3899   856 ALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAA 935

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  708 ---NKRQRLIAEAERCHVRKVRFPNTLDEVQMLQTLSDSAFARYLLGC----FWYSKRRYEEAVSCWRETLEKSPDYAPA 780
Cdd:COG3899   936 aaaAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAaaaaAAALEAAAAALLALLAAAAAAAAAAAAL 1015

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  781 HRLLGVYAWNKQQDAAQALAYLQRAVELEPENARFLFELDFLKKSLGTPVNERLETLAARKAVVLKRDDLTAELLSLWNA 860
Cdd:COG3899  1016 AAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAA 1095

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  861 AGHYADAAAILGTRVFHPWEGGEGKVTGQYLLNQLHRALQLIERKAFTQAARCLNEALRYPDNLGEGRLPGQTDNDIWYL 940
Cdd:COG3899  1096 ALAAAAAAALALAAALAALALAAALAALALAAAARAAAALLLLAAALALALAALLLLAALLLALALLLLALAALALAAAL 1175

                         490       500
                  ....*....|....*....|...
gi 740639290  941 LGYCAEQTGDAHRAAEYYQLALQ 963
Cdd:COG3899  1176 AALAAALLAAAAAAAAAAALLAA 1198
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 746-807 2.74e-03

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 41.33  E-value: 2.74e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 740639290  746 ARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAP--AHRLLGVYAwnKQQDAAQALAYLQRAVE 807
Cdd:PRK11788  216 ASILLGDLALAQGDYAAAIEALERVEEQDPEYLSevLPKLMECYQ--ALGDEAEGLEFLRRALE 277
 
Name Accession Description Interval E-value
DUF5107 pfam17128
Domain of unknown function (DUF5107); This family is found in range of different bacterial ...
 41-344 7.95e-69

Domain of unknown function (DUF5107); This family is found in range of different bacterial species. In many proteins it lies N-terminal to a TPR-repeat region at the C-terminus.


Pssm-ID: 407262  Cd Length: 300  Bit Score: 232.85  E-value: 7.95e-69
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290    41 VYPYGVIDTLTGEREMRDYQAVWMENDFIRIMLLPELGGRIHRAYDKVKQRDFVYYNEVVKPALVGLLGPWISGGIEFNW 120
Cdd:pfam17128    6 VYPY*VFSGYSNKPVPKRWR*ISLENEYLKAIVLPDLGGKVISATEKSSGEEFLYRNDVIKFRRIGPRGPWTAGGIEVNF 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290   121 PQHHRPTTFMPVDFSIQRGENGVqTVWMGEAEPMRGLQVMTGFTLYPDRALIEITGKVFNgnATPRH--FLWWANPAVKG 198
Cdd:pfam17128   86 PIGHSPTTASPVDYQIDHTADST-TVTVGERDLHSGTQWRVEISLPKDKACLEQRVVWYN--PGPLRqpYYSWSNAALPC 162

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290   199 GDAHQSVFPPDVTAVFDHGKRDVSAFPIATgtyykvdysAGVDISRYKNVPVPTSYMAEKSDYDFVGAYHHDERGGLLHV 278
Cdd:pfam17128  163 ADDTQFDFPGGTKTEHSHHEGDIKEWPVG*---------TGLDRSFYKNNNVGGGKSAHGSRENAFGGYTPSLGSGFGHI 233

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 740639290   279 ADHHVSPGKKQWSWGYGDFGQAWDRNLTDENGPYIELMTGVYTDNQPDFTWLAPYEEKVFVQNFLP 344
Cdd:pfam17128  234 ADYSDTPGKKLWSWGRARDGKIWEDLLTDDDGQYVEIQAGPILNQSIKLELLRPGESKNHTEYWIP 299
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 609-816 3.91e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 67.33  E-value: 3.91e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  609 ALALADSGRAKEAQAYIVLCLEQYPLSYPLHCAR-WMIAPGDEARASLLRVTGRRGINGSLLAGWLLSIGQKQAAKEVLE 687
Cdd:COG3914    23 AAELALAAELEAAALAAALGLALLLLAALAEAAAaALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYR 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  688 -VLDCQEALPMLWrASLSDDANKRQRLiAEAERCHvRKVrfpntldevqmLQTLSDSAFARYLLGCFWYSKRRYEEAVSC 766
Cdd:COG3914   103 rALALNPDNAEAL-FNLGNLLLALGRL-EEALAAL-RRA-----------LALNPDFAEAYLNLGEALRRLGRLEEAIAA 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 740639290  767 WRETLEKSPDYAPAHRLLGVyAWNKQQDAAQALAYLQRAVELEPENARFL 816
Cdd:COG3914   169 LRRALELDPDNAEALNNLGN-ALQDLGRLEEAIAAYRRALELDPDNADAH 217
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 629-852 2.98e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.24  E-value: 2.98e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  629 LEQYPLSYPLHCARWMIAPGDEARASLLRVTGRRGINGSLLAGWLLSIGQKQAAKEVLEVLDCQEALPMLWRASLsddAN 708
Cdd:COG3914     3 AAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLL---AA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  709 KRQRLIAEAERCHvrkvRFPNTLDEVQMLQTLS-DSAFARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAPAHRLLGVy 787
Cdd:COG3914    80 LLELAALLLQALG----RYEEALALYRRALALNpDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGE- 154

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 740639290  788 AWNKQQDAAQALAYLQRAVELEPENARFLFELDFLKKSLGtpvneRLETL--AARKAVVLKRDDLTA 852
Cdd:COG3914   155 ALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLG-----RLEEAiaAYRRALELDPDNADA 216
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
742-1015 3.57e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.56  E-value: 3.57e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  742 DSAFARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAPAHRLLGVyAWNKQQDAAQALAYLQRAVELEPENARFLFELDF 821
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGL-AYLRLGRYEEALADYEQALELDPDDAEALNNLGL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  822 LKKSLGTPvNERLETLaaRKAVVLKRDDLTAellslwnaaghyadaaailgtrvfhpweggegkvtgqylLNQLHRALQL 901
Cdd:COG0457    85 ALQALGRY-EEALEDY--DKALELDPDDAEA---------------------------------------LYNLGLALLE 122

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  902 IERkaFTQAARCLNEALRY-PDNLgegrlpgqtdnDIWYLLGYCAEQTGDAHRAAEYYQLALQGGSTLDAGRYYNDQPAD 980
Cdd:COG0457   123 LGR--YDEAIEAYERALELdPDDA-----------DALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALA 189

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 740639290  981 YLFWQGIALRKSGNPAQAEQNFQNFIAWARQHRDD 1015
Cdd:COG0457   190 LAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 579-827 7.09e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 61.28  E-value: 7.09e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  579 MKRGDTADALEKVNTSLQFNASNHLAMGLKALALADSGRAKEAQAYIVLCLEQYPLSYplhcarwmiapgdEARASLLRV 658
Cdd:COG2956    53 RRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDA-------------EALRLLAEI 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  659 tgrrgingsllagwLLSIGQKQAAKEVLEVL---DCQEALPMLWRASLSDDANKRQRLIAEAErchvrkvrfpntldevQ 735
Cdd:COG2956   120 --------------YEQEGDWEKAIEVLERLlklGPENAHAYCELAELYLEQGDYDEAIEALE----------------K 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  736 MLQTLSDSAFARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAPAHRLLGvYAWNKQQDAAQALAYLQRAVELEPENARF 815
Cdd:COG2956   170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLA-ELYEKLGDPEEALELLRKALELDPSDDLL 248

                         250
                  ....*....|..
gi 740639290  816 LFELDFLKKSLG 827
Cdd:COG2956   249 LALADLLERKEG 260
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 744-1016 2.51e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 59.36  E-value: 2.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  744 AFARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAPAHRLLGvYAWNKQQDAAQALAYLQRAVELEPENARFLFEL--DF 821
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALG-NLYRRRGEYDRAIRIHQKLLERDPDRAEALLELaqDY 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  822 LKKSLGTPVNERLETLAARKAvvlKRDDLTAELLSLWNAAGHYADAAAILGTRVfhpweggegKVTGQYLLNQLHRALQL 901
Cdd:COG2956    87 LKAGLLDRAEELLEKLLELDP---DDAEALRLLAEIYEQEGDWEKAIEVLERLL---------KLGPENAHAYCELAELY 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  902 IERKAFTQAARCLNEALRY-PDNLgegrlpgqtdnDIWYLLGYCAEQTGDAHRAAEYYQLALQggstldagryYNDQPAD 980
Cdd:COG2956   155 LEQGDYDEAIEALEKALKLdPDCA-----------RALLLLAELYLEQGDYEEAIAALERALE----------QDPDYLP 213

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 740639290  981 YLFWQGIALRKSGNPAQAEQNFQNfiAWARQHRDDV 1016
Cdd:COG2956   214 ALPRLAELYEKLGDPEEALELLRK--ALELDPSDDL 247
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 425-670 4.53e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.39  E-value: 4.53e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  425 ADNQPLLDYQEHITQQTPLPEPACAPAMPKEIHNGDELYFIGQHLEQYNHASRY--AADYYRRAIALDPQDYRNNVALGT 502
Cdd:COG3914    41 LGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYeeALALYRRALALNPDNAEALFNLGN 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  503 LAFNCADWGLAEQCARAALlrahrlNKNPRDGEASMLLGSALERQGDEAGAWDCYYKAswsgncrdaawwalarlamkrg 582
Cdd:COG3914   121 LLLALGRLEEALAALRRAL------ALNPDFAEAYLNLGEALRRLGRLEEAIAALRRA---------------------- 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  583 dtadalekvntsLQFNASNHLAMGLKALALADSGRAKEAQAYIVLCLEQYP-----LSYPLHCAR----WMIAPGDEARA 653
Cdd:COG3914   173 ------------LELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPdnadaHSNLLFALRqacdWEVYDRFEELL 240

                         250
                  ....*....|....*..
gi 740639290  654 SLLRVTGRRGINGSLLA 670
Cdd:COG3914   241 AALARGPSELSPFALLY 257
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 735-829 6.78e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.58  E-value: 6.78e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  735 QMLQTLSDSAFARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAPAHRLLGvYAWNKQQDAAQALAYLQRAVELEPENAR 814
Cdd:COG4783    29 KALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG-LALLKAGDYDEALALLEKALKLDPEHPE 107

                          90
                  ....*....|....*
gi 740639290  815 FLFELDFLKKSLGTP 829
Cdd:COG4783   108 AYLRLARAYRALGRP 122
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
479-703 5.78e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.01  E-value: 5.78e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  479 AADYYRRAIALDPQDYRNNVALGTLAFNCADWGLAEQCARAALlrahrlNKNPRDGEASMLLGSALERQGDEAGAWDCYY 558
Cdd:COG0457    27 AIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQAL------ELDPDDAEALNNLGLALQALGRYEEALEDYD 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  559 KASwSGNCRDAAWWALA-RLAMKRGDTADALEKVNTSLQFNASNHLAMGLKALALADSGRAKEAQAYIVLCLEQYPLSYP 637
Cdd:COG0457   101 KAL-ELDPDDAEALYNLgLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALL 179

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 740639290  638 LHCARWMIAPGDEARASLLRVTGRRGINGSLLAGWLLSIGQKQAAKEVLEVLDCQEALPMLWRASL 703
Cdd:COG0457   180 AAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 479-816 1.74e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 55.47  E-value: 1.74e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290   479 AADYYRRAIALDPQDYRNNVALG-------------TLAFNCADWGLAEQCARAALLRAHRLNKNPRDGEASmlLGSALE 545
Cdd:TIGR02917  552 AVAWLEKAAELNPQEIEPALALAqyylgkgqlkkalAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSS--FKKLLA 629

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290   546 RQGDEAGAWDCYYKASWSGNcrdaawwalarlamkrgDTADALEKVNTSLQFNASNHLAMGLKALALADSGRAKEAQAYI 625
Cdd:TIGR02917  630 LQPDSALALLLLADAYAVMK-----------------NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290   626 VLCLEQYPLSYPLHC--ARWMIAPGDEARASL-LRVTGRRGINGSL---LAGWLLSIGQKQAAKEVLEvldcqealpmlw 699
Cdd:TIGR02917  693 KSLQKQHPKAALGFEleGDLYLRQKDYPAAIQaYRKALKRAPSSQNaikLHRALLASGNTAEAVKTLE------------ 760

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290   700 rASLSDDANkrqrliaeaerchvrkvrfpntldevqmlqtlsdSAFARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAP 779
Cdd:TIGR02917  761 -AWLKTHPN----------------------------------DAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAV 805

                          330       340       350
                   ....*....|....*....|....*....|....*...
gi 740639290   780 AHRLLgvyAW-NKQQDAAQALAYLQRAVELEPENARFL 816
Cdd:TIGR02917  806 VLNNL---AWlYLELKDPRALEYAERALKLAPNIPAIL 840
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
742-814 1.98e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.78  E-value: 1.98e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 740639290  742 DSAFARYLLGCFWYSKRRYEEAVScWRETLEKSPDYAPAHRLLGVYAWnKQQDAAQALAYLQRAVELEPENAR 814
Cdd:COG3063    24 DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLL-ELGDYDEALAYLERALELDPSALR 94
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 735-819 2.04e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.16  E-value: 2.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  735 QMLQTLSDSAFARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAPAHRLLG-VYAwnKQQDAAQALAYLQRAVELEPENA 813
Cdd:COG4235     8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAeALL--AAGDTEEAEELLERALALDPDNP 85


                  ....*.
gi 740639290  814 RFLFEL 819
Cdd:COG4235    86 EALYLL 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 458-557 2.18e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.77  E-value: 2.18e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  458 NGDELYFIGQHLEQYNHASRyAADYYRRAIALDPQDYRNNVALGTLAFNCADWGLAEQCARAAllrahrLNKNPRDGEAS 537
Cdd:COG4235    16 DAEGWLLLGRAYLRLGRYDE-ALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA------LALDPDNPEAL 88

                          90       100
                  ....*....|....*....|
gi 740639290  538 MLLGSALERQGDEAGAWDCY 557
Cdd:COG4235    89 YLLGLAAFQQGDYAEAIAAW 108
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 479-687 4.61e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.81  E-value: 4.61e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  479 AADYYRRAIALDPQDYRNNVALGTLAFNCADWGLAEQCARAAllrahrLNKNPRDGEASMLLGSALERQGDEAGAWDCYY 558
Cdd:COG2956    61 AIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKL------LELDPDDAEALRLLAEIYEQEGDWEKAIEVLE 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  559 KASWSGNCRDAAWWALARLAMKRGDTADALEKVNTSLQFNASNHLAMGLKALALADSGRAKEAQAYIVLCLEQYPLSYPL 638
Cdd:COG2956   135 RLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA 214

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 740639290  639 HC--ARWMIAPGD--EARASLLRVTGRRGINGSL--LAGWLLSIGQKQAAKEVLE 687
Cdd:COG2956   215 LPrlAELYEKLGDpeEALELLRKALELDPSDDLLlaLADLLERKEGLEAALALLE 269
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 735-812 4.65e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.19  E-value: 4.65e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 740639290  735 QMLQTLSDSAFARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAPAHRLLGvYAWNKQQDAAQALAYLQRAVELEPEN 812
Cdd:COG4783    63 EALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLA-RAYRALGRPDEAIAALEKALELDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 754-827 5.99e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.34  E-value: 5.99e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 740639290  754 WYSKRRYEEAVSCWRETLEKSPDYAPAHRLLGvYAWNKQQDAAQALAYLQRAVELEPENARFLFELDFLKKSLG 827
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDPNNPELYYNLA-LLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG 136
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 741-819 7.24e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.81  E-value: 7.24e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 740639290  741 SDSAFARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAPAHRLLGvYAWNKQQDAAQALAYLQRAVELEPENARFLFEL 819
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLG-EILLQLGDLDEAIVLLHEALELDPDEPEARLNL 78
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
738-819 1.11e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 50.68  E-value: 1.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  738 QTLSDSAFARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAPAHRLLGVYaWNKQQDAAQALAYLQRAVELEPENARFLF 817
Cdd:COG4785    67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLA-YLLLGDYDAALEDFDRALELDPDYAYAYL 145


                  ..
gi 740639290  818 EL 819
Cdd:COG4785   146 NR 147
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 517-646 1.81e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 1.81e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  517 ARAALLRAhRLNKNPRDGEASMLLGSALERQGDEAGAWDCYYKA-SWSGNcRDAAWWALARLAMKRGDTADALEKVNTSL 595
Cdd:COG4235     1 EAIARLRQ-ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKAlRLDPD-NADALLDLAEALLAAGDTEEAEELLERAL 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 740639290  596 QFNASNHLAMGLKALALADSGRAKEAQAYIVLCLEQYPLSYPLHCARWMIA 646
Cdd:COG4235    79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIA 129
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
479-560 2.18e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 2.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  479 AADYYRRAIALDPQDYRNNVALGTLAFNCADWGLAEQCARAallrahrLNKNPRDGEASMLLGSALERQGDEAGAWDCYY 558
Cdd:COG3063    11 AEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKA-------LKLDPNNAEALLNLAELLLELGDYDEALAYLE 83


                  ..
gi 740639290  559 KA 560
Cdd:COG3063    84 RA 85
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
754-827 2.43e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.70  E-value: 2.43e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 740639290  754 WYSKRRYEEAVSCWRETLEKSPDYAPAHRLLGvYAWNKQQDAAQALAYlQRAVELEPENARFLFELDFLKKSLG 827
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLG-LLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELG 73
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 527-812 3.77e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.24  E-value: 3.77e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290   527 LNKNPRDGEASMLLGSALERQGDEAGAWDCYYKASWSGNCRDAAWWALARLAMKRGDTADALEKV-NTSLQFNASNHLAM 605
Cdd:TIGR02917   49 LQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELpGKTLLDDEGAAELL 128

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290   606 GLKALALADSGRAKEAQAYIVLCLEQYPLSYP--LHCARWMIAPG--DEARASLLRVTGRRGING---SLLAGWLLSIGQ 678
Cdd:TIGR02917  129 ALRGLAYLGLGQLELAQKSYEQALAIDPRSLYakLGLAQLALAENrfDEARALIDEVLTADPGNVdalLLKGDLLLSLGN 208

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290   679 KQAAKEVLE---VLDCQEALPMLWRASLSDDANKRQRliAEAERCHVRKvRFPNtldevqmlqtlsdSAFARYLLGCFWY 755
Cdd:TIGR02917  209 IELALAAYRkaiALRPNNIAVLLALATILIEAGEFEE--AEKHADALLK-KAPN-------------SPLAHYLKALVDF 272

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 740639290   756 SKRRYEEAVSCWRETLEKSPDYAPAHRLLGVYAWnKQQDAAQALAYLQRAVELEPEN 812
Cdd:TIGR02917  273 QKKNYEDARETLQDALKSAPEYLPALLLAGASEY-QLGNLEQAYQYLNQILKYAPNS 328
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 762-819 7.59e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.54  E-value: 7.59e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 740639290  762 EAVSCWRETLEKSPDYAPAHRLLGVyAWNKQQDAAQALAYLQRAVELEPENARFLFEL 819
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGR-AYLRLGRYDEALAAYEKALRLDPDNADALLDL 57
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 899-1007 9.16e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 45.75  E-value: 9.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  899 LQLIERKAFTQAARCLNEAL-RYPDnlgegrlpGQTDNDIWYLLGYCAEQTGDAHRAAEYYQLALQggstldagrYYNDQ 977
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLkRYPN--------SPLAPDALYWLGEAYYALGDYDEAAEAFEKLLK---------RYPDS 63

                          90       100       110
                  ....*....|....*....|....*....|..
gi 740639290  978 P--ADYLFWQGIALRKSGNPAQAEQNFQNFIA 1007
Cdd:COG1729    64 PkaPDALLKLGLSYLELGDYDKARATLEELIK 95
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 735-813 7.73e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.46  E-value: 7.73e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 740639290  735 QMLQTLSDSAFARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAPAHRLLGVYAWnKQQDAAQALAYLQRAVELEPENA 813
Cdd:COG4235    42 KALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF-QQGDYAEAIAAWQKLLALLPADA 119
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 735-810 1.01e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.80  E-value: 1.01e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 740639290  735 QMLQTLSDSAFARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAPAHRLLGVYAWnKQQDAAQALAYLQRAVELEP 810
Cdd:COG5010    79 QALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL-SLGQDDEAKAALQRALGTSP 153
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 735-811 2.36e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.90  E-value: 2.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  735 QMLQTLSDSAF---ARYLLGCFWYSKRRYEEAVSCWRETLEKSPD--YAP-AHRLLGvYAWNKQQDAAQALAYLQRAVEL 808
Cdd:COG1729    18 AFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspKAPdALLKLG-LSYLELGDYDKARATLEELIKK 96


                  ...
gi 740639290  809 EPE 811
Cdd:COG1729    97 YPD 99
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 479-560 3.74e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.72  E-value: 3.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  479 AADYYRRAIALDPQDYRNNVALGTLAFNCADWGLAEQCARAAllrahrLNKNPRDGEASMLLGSALERQGDEAGAWDCYY 558
Cdd:COG4783    57 AIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKA------LKLDPEHPEAYLRLARAYRALGRPDEAIAALE 130


                  ..
gi 740639290  559 KA 560
Cdd:COG4783   131 KA 132
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 897-1012 5.97e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.33  E-value: 5.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  897 RALQLIERKAFTQAARCLNEALR-YPDNLgegrlpgqtdnDIWYLLGYCAEQTGDAHRAAEYYQLALQggstldagryYN 975
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALElDPDNP-----------EAFALLGEILLQLGDLDEAIVLLHEALE----------LD 68

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 740639290  976 DQPADYLFWQGIALRKSGNPAQAEQNFQNFIAWARQH 1012
Cdd:COG4783    69 PDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEH 105
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 479-560 6.11e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.48  E-value: 6.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  479 AADYYRRAIALDPQDYRNNVALGTLAFNCADWGLAEQCARAAllrahrLNKNPRDGEASMLLGSALERQGDEAGAWDCYY 558
Cdd:COG5010    73 SLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKA------LALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146


                  ..
gi 740639290  559 KA 560
Cdd:COG5010   147 RA 148
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 460-560 7.30e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.95  E-value: 7.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  460 DELYFIGQHLEQYNHASRyAADYYRRAIALDPQDYRNNVALGTLAFNCADWGLAEQCARAAllrahrLNKNPRDGEASML 539
Cdd:COG4783     5 EALYALAQALLLAGDYDE-AEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPEARLN 77

                          90       100
                  ....*....|....*....|.
gi 740639290  540 LGSALERQGDEAGAWDCYYKA 560
Cdd:COG4783    78 LGLALLKAGDYDEALALLEKA 98
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 481-635 8.04e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 8.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  481 DYYRRAIALDPQDYRNNVALGTLAFNCADWGLAEQCARAALLRAHRLNKNPRDGEASMLLGSALERQGDEAGAWDCYYKA 560
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 740639290  561 SWSGNCRDAAWWALARLAMKRGDTADALEKVNTSLQFNASNHLAMGLKALALADSGRAKEAQAYIVLCLEQYPLS 635
Cdd:COG5010    81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPLK 155
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 585-804 8.49e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 43.44  E-value: 8.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  585 ADALEKVNTSLQFNASNHLAMGLKALALADSGRAKEAQAYIVLCLEQYpLSYPLHCARWMIAPGD--EARASL---LRVT 659
Cdd:COG3914    30 AELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLL-AALLELAALLLQALGRyeEALALYrraLALN 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  660 GRRGINGSLLAGWLLSIGQKQAAKEVLE-VLDCQEALPMLW--RASLSDDANKRQRLIAEAERChvrkvrfpntldevqm 736
Cdd:COG3914   109 PDNAEALFNLGNLLLALGRLEEALAALRrALALNPDFAEAYlnLGEALRRLGRLEEAIAALRRA---------------- 172

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 740639290  737 LQTLSDSAFARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAPAHRLL-----GVYAWNKQQDAAQALAYLQR 804
Cdd:COG3914   173 LELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLlfalrQACDWEVYDRFEELLAALAR 245
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 897-1078 9.29e-04

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 43.53  E-value: 9.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  897 RALQLIERKAFTQAARCLNEALR-YPDnlgegrlpgqtDNDIWYLLGYCAEQTGDAHRAAEYYQLALQggstLDAGRYYN 975
Cdd:PRK11447  275 QGLAAVDSGQGGKAIPELQQAVRaNPK-----------DSEALGALGQAYSQQGDRARAVAQFEKALA----LDPHSSNR 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  976 DQPADYL----FW----QGIALRKSGNPAQAEQNFQNfiawARQHRDDvpqaDFFAVslpdLVVLDVSAQEqhqqhclfi 1047
Cdd:PRK11447  340 DKWESLLkvnrYWlliqQGDAALKANNLAQAERLYQQ----ARQVDNT----DSYAV----LGLGDVAMAR--------- 398

                         170       180       190
                  ....*....|....*....|....*....|.
gi 740639290 1048 ealghlglGNVSASQQAMQRLLQLNPAYDKA 1078
Cdd:PRK11447  399 --------KDYAAAERYYQQALRMDPGNTNA 421
COG3899 COG3899
Predicted ATPase [General function prediction only];
474-963 1.45e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 42.92  E-value: 1.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  474 HASRYAADYYRRAIALDPQDYRNNvalgtlafncADWGLAEQCARAALLRAHRlnknprdGEASMLLGSALERQGDEAGA 553
Cdd:COG3899   719 GAYAEALRYLERALELLPPDPEEE----------YRLALLLELAEALYLAGRF-------EEAEALLERALAARALAALA 781

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  554 WDCYykaswsGNCRDAAWWALARLAMKRGDTADALEKVNTSLQ----FNASNHLAMGL--KALALADSGRAKEAQAYIVL 627
Cdd:COG3899   782 ALRH------GNPPASARAYANLGLLLLGDYEEAYEFGELALAlaerLGDRRLEARALfnLGFILHWLGPLREALELLRE 855

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  628 CLEQYPLSYPLHCARWMIAPGDEARASLLRVTGRRGINGSLLAGWLLSIGQKQAAKEVLEVLDCQEALPMLWRASLSDDA 707
Cdd:COG3899   856 ALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAA 935

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  708 ---NKRQRLIAEAERCHVRKVRFPNTLDEVQMLQTLSDSAFARYLLGC----FWYSKRRYEEAVSCWRETLEKSPDYAPA 780
Cdd:COG3899   936 aaaAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAaaaaAAALEAAAAALLALLAAAAAAAAAAAAL 1015

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  781 HRLLGVYAWNKQQDAAQALAYLQRAVELEPENARFLFELDFLKKSLGTPVNERLETLAARKAVVLKRDDLTAELLSLWNA 860
Cdd:COG3899  1016 AAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAA 1095

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  861 AGHYADAAAILGTRVFHPWEGGEGKVTGQYLLNQLHRALQLIERKAFTQAARCLNEALRYPDNLGEGRLPGQTDNDIWYL 940
Cdd:COG3899  1096 ALAAAAAAALALAAALAALALAAALAALALAAAARAAAALLLLAAALALALAALLLLAALLLALALLLLALAALALAAAL 1175

                         490       500
                  ....*....|....*....|...
gi 740639290  941 LGYCAEQTGDAHRAAEYYQLALQ 963
Cdd:COG3899  1176 AALAAALLAAAAAAAAAAALLAA 1198
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 485-560 2.45e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 41.43  E-value: 2.45e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 740639290  485 RAIALDPQDYRNNVALGTLAFNCADWGLAEQCARAALLRAhrlnknpRDGEASMLLGSALERQGDEAGAWDCYYKA 560
Cdd:COG3071   249 KWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALR-------PSAEAYAELARLLEQLGDPEEAAEHYRKA 317
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 746-807 2.74e-03

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 41.33  E-value: 2.74e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 740639290  746 ARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAP--AHRLLGVYAwnKQQDAAQALAYLQRAVE 807
Cdd:PRK11788  216 ASILLGDLALAQGDYAAAIEALERVEEQDPEYLSevLPKLMECYQ--ALGDEAEGLEFLRRALE 277
COG3899 COG3899
Predicted ATPase [General function prediction only];
871-1019 2.85e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 41.77  E-value: 2.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  871 LGTRVFHPWEGGEGKVTGQYLLNQLHRALQlieRKAFTQAARCLNEALRypdnLGEGRLPGQTDNDIWYLLGYCAEQTGD 950
Cdd:COG3899   688 LFELAHHLNRAGERDRAARLLLRAARRALA---RGAYAEALRYLERALE----LLPPDPEEEYRLALLLELAEALYLAGR 760

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  951 AHRAAEYYQLALQGGSTLDAG-RYYNDQPADYLFWQGIALRKSGNPAQAEQNFQNFIAWARQHRDDVPQA 1019
Cdd:COG3899   761 FEEAEALLERALAARALAALAaLRHGNPPASARAYANLGLLLLGDYEEAYEFGELALALAERLGDRRLEA 830
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
742-827 4.43e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.90  E-value: 4.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740639290  742 DSAFARYLLGCFWYSKRRYEEAVSCWRETLEKSPDYAPAHRLLGVyAWNKQQDAAQALAYLQRAVELEPENARFLFELDF 821
Cdd:COG4785   105 DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGI-ALYYLGRYELAIADLEKALELDPNDPERALWLYL 183


                  ....*.
gi 740639290  822 LKKSLG 827
Cdd:COG4785   184 AERKLD 189
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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