|
Name |
Accession |
Description |
Interval |
E-value |
| FimD |
COG3188 |
Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures]; |
8-763 |
0e+00 |
|
Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures];
Pssm-ID: 442421 [Multi-domain] Cd Length: 817 Bit Score: 545.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 8 PPARSALPGPTTSLPVPSADATVPASDLYLGVSLNGQPT-RLIVHFVVADG----RFYASQDDLNDIGVATSRLRQ---P 79
Cdd:COG3188 30 PAFLDGDDAAAIDLSRFSRGNYVPPGTYYLDVYVNGQPLgRGDITFVADRDdgrlQPCLTPELLEQLGLKLDALPAllaA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 80 ANALIALDALDGLRYRYDAARQTIDLDAPDSLRIPHTFDtrALAPTVPASAGRGVVLNYDLYAQTADRASAALwHEARYF 159
Cdd:COG3188 110 DGQCVDLSAIPGASVRFDFATQRLDLSVPQAALPYQARG--YVPPSLWDDGIPALLLNYDLNASRSRGRSGSA-SESRYL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 160 D-PAGVFSSTGVA-------YLQHGGQRYTRYDTSWSMSDPKSLTTTQFGDTISSSlAWTRSLRVAGLQWRSNFALRPDL 231
Cdd:COG3188 187 GlNSGLNLGAWRLrnnssysYSSGGGSGWQRLDTYLQRDIPALRSQLTLGDSYTSS-DWFDSVRFRGVQLASDFRMLPDS 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 232 VTFPVPALAGTAVVPSTVDLYVNGVRQFSGDVPSGPFVINSVPGITGAGNATVVTRDALGRTIATSLPLYIDTRMLAPGL 311
Cdd:COG3188 266 LRGYAPVVRGIAASNATVTVRQNGYVIYQTTVPPGPFEINDLPPTGGAGDLDVTVTEADGREQTFTVPFASVPQLLRPGL 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 312 ASYSVEAGFLRRAwglRSFDYAPrPAVSATARYGVSERLTVEAHAEATPGLYNAGAGALVRLGGA------GVASASAAQ 385
Cdd:COG3188 346 SRYSLAAGRYRRN---GSFDYGP-PFAQGTLRYGLSNGLTLYGGAEAAEDYQAGGLGAGFNLGALgalsadVTQSRARLP 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 386 SAGRLAGTQAGLGYQLVLPR----FSIDAQTlRAFGQYGDLA----ARDGTPVASA-----TDRVTLSLPFIRSQTFAIS 452
Cdd:COG3188 422 DDDTGSGQSYRLGYSKSFDEtgtnFSLAGYR-YSTRGYRDLSdaldARDSGGDNSSyrprsRFQATLSQSLGDGGSLYLS 500
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 453 YIGLRYPG-LQTARIGSVSYSVNVGNLaSINVSAFQDFHQHDS--RGVFVSLNVALGNRTSVNANVGR-QNGKTVYNVNA 528
Cdd:COG3188 501 YSQQDYWDgSGRTRSYSLGYSNSLRNI-SYSLSASRSRNGGGRrdRSVSLSLSIPLGNRSSASYSLSRdNGGGTSQQVGL 579
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 529 MRAPDYGGGFGWSAQTG--DAGGVRYGQAQARYLGRSGEVAALAQTIAGHQNAALDVAGAVVLMDGRALLTRRIDDGFAL 606
Cdd:COG3188 580 SGSAPEDGGLGYSLSAGygSGGDGNSGSANLSYRGSYGTLSAGYSYSRGYRQVSAGASGGLVAHAGGVTLSRRLGDTFAL 659
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 607 VSTDASPGVPVLHENrlIGTTDRNGYLLIPDLNAYQNNRIGIDTLKLPLDARVSDTIRNVVPQSRSGVLAHFAIAREQSA 686
Cdd:COG3188 660 VDAPGAAGVPVNNER--GGRTDRRGYALVPYLTPYRRNRVSIDPLDLPDDVELDNTEQRVVPTRGAGVLVRFPTRRGRRA 737
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 740974118 687 SIVLEDASGAPLPAGLSVSHRESGASTIVGYDGLTFVTGLAAANHLEIT--GHGKRCAVAFDYVRPADGTPPTIGPLVC 763
Cdd:COG3188 738 LLTLRDADGKPLPFGAEVTDEGGQEVGIVGQDGQVYLSGLPPQGTLTVKwgDGAQQCRASYTLPASADGQGIPRLPLTC 816
|
|
| PRK15213 |
PRK15213 |
outer membrane usher protein PefC; |
89-701 |
1.52e-23 |
|
outer membrane usher protein PefC;
Pssm-ID: 237926 [Multi-domain] Cd Length: 797 Bit Score: 106.37 E-value: 1.52e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 89 LDGLRYRYDAARQTIDLDAPDSLRIPHTFDTRALAPTVP----------------ASAGRgvvLNYDLYAQTADRASAAL 152
Cdd:PRK15213 101 LEYYRSGYDAARQCYVLSKAPSVQVDFDYSTQSLTLSIPqaglvkkpepvewdygVPAFR---LNYSANASKTSRQNTSA 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 153 WHEARYFDPAG--VFSSTGVAYLQHGGQRYTRYDTSWSMSDPKSLTT------TQFGDTISSSLAWTrslrvaGLQWRSN 224
Cdd:PRK15213 178 YGNADLKANLGrwVLSSRASASRGAGGSNEFTTNDFTLTTAIKSLQGdllvgkTQTGNSLLGSFGFY------GASLRSN 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 225 FALRPDLVTFPVPALAGTAVVPSTVDLYVNGVRQFSGDVPSGPFVINSVPGiTGAGNATVVTRDALGRTIATSLPLYIDT 304
Cdd:PRK15213 252 NDMLPWENRGYAPVISGIANGPSRVTISQNGYTLYSEVVPAGPFQLDDVPL-VGSGDLTVTVEEEDGHKTTQVFPVAVLP 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 305 RMLAPGLASYSVeagflrrAWGLRSFDY---APRPAVSATARYGVS-ERLTVEAHAEATPGLYNAGAGALVrlggagvas 380
Cdd:PRK15213 331 GLLRPGEHEYNV-------AAGLKDDNYdlkKPENGLFFAGSYGYGfDGLTLNAAGILNQNYQGGGVGVVQ--------- 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 381 asaaqsagrlagtqaGLGYqlvLPRFSIDAQTLRAfgQYGDLAARDGTPVA-----SATDRVTLSL-------------- 441
Cdd:PRK15213 395 ---------------GLGY---FGAVSASGNLSQA--KYQNGDNKSGNSVSlkyakSLSDTNNLQLlsyryqsegyvdfa 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 442 PFIRSQTFAISYIGLRYPGLQTARIGSVSYSVNV-----------GNLASINVSAFQDFHQ----------------HDS 494
Cdd:PRK15213 455 DFYPTDLYTRSNTKRRYEDIFSQGLSQSLFFLSLsgwqedywpssGKETGATVSLSTTIKGvsvnlngsyskrnslgEND 534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 495 RGVFVSLNVAL-----------------GNRTSVNANV-GRQNGKTVYNVNAMRapDYGGGFGWSAQtgdaggvrygqaq 556
Cdd:PRK15213 535 YSASLSISIPFtlfdkrhysstsvsysrSGGTGFNSGVsGSLNDRLSYGLNTNR--DRDGGRSSSLN------------- 599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 557 ARYLG-RSGEVAALAQTIAGHQNAALDVAGAVVLM-DGRALLTRRIDDGFALVSTDASPGVPVLHEnrliGTTDRNGYLL 634
Cdd:PRK15213 600 ASYGFdRAQTNGMLSHQGGGNTSGSVSVSGSVLGTpDAGILFTRVTGDTVAVVNVKDVPGVKFNGS----GPTDSKGNTV 675
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 740974118 635 IPdLNAYQNNRIGIDTLKLPLDARVSDTIRNVVPQSRSGVLAHFAIAREQSASIVLEDASGAPLPAG 701
Cdd:PRK15213 676 VP-LSSYDLNTVTVNAENLPLNTELTTTSQNVVPTDKAVVYREFKALKVLRYILRVKQKDGRFVPGG 741
|
|
| Usher |
pfam00577 |
Outer membrane usher protein; In Gram-negative bacteria the biogenesis of fimbriae (or pili) ... |
237-678 |
4.88e-20 |
|
Outer membrane usher protein; In Gram-negative bacteria the biogenesis of fimbriae (or pili) requires a two- component assembly and transport system which is composed of a periplasmic chaperone and an outer membrane protein which has been termed a molecular 'usher'. The usher protein is rather large (from 86 to 100 Kd) and seems to be mainly composed of membrane-spanning beta-sheets, a structure reminiscent of porins. Although the degree of sequence similarity of these proteins is not very high they share a number of characteriztics. One of these is the presence of two pairs of cysteines, the first one located in the N-terminal part and the second at the C-terminal extremity that are probably involved in disulphide bonds. The best conserved region is located in the central part of these proteins.
Pssm-ID: 425762 [Multi-domain] Cd Length: 549 Bit Score: 94.68 E-value: 4.88e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 237 PALAGTAVVPSTVDLYVNGVRQFSGDVPSGPFVINSVPGITGAGNATVVTRDALGRTIATSLPLYIDTRMLAPGLASYSV 316
Cdd:pfam00577 87 PVIRGIARTNARVTIRQNGYVIYQTLVPPGPFEITDLYPTGSSGDLDVTVEEADGSVQTFTVPYSSVPLLLRPGQVRYSL 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 317 EAGFLRRawglrSFDYAPRPAV-SATARYGVSERLTVEAHAEATPGLYNAGAGALVRLGGAGVASASAAQSAGRLAGTQA 395
Cdd:pfam00577 167 AAGRYRS-----GNSDQESPFFfQATASWGLPNGLTLYGGLQGADDYQAAALGLGRNLGDLGALSVDVTQSRSQLDNQSS 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 396 GLGYQLvlpRFSIdAQTLRAFGQYGDLAA------------------RDGTPVASATDR------VTLSLPFIRSQTFAI 451
Cdd:pfam00577 242 EQGQSY---RFLY-NKSLNETGTNFQLAGyrystrgfytladaldarMDGFDYYNLTYNkknsyqLNVSQSLGGWGSLYL 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 452 SYIGLRYPGL-QTARIGSVSYSVNVGNLA-SINVSAFQDFHQHDS-RGVFVSLNVALGNRTS-VNANVG---RQNGKTVY 524
Cdd:pfam00577 318 SGSRQTYWGTsGTSYNLQLGYNTNIGRVSvSLSWSYSRNEYENGEdDLLYLNLSIPFGRGLSrANSSYSmtrNNSGRTTS 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 525 NVNAMRAPDyGGGFGWSAQTGDA-GGVRYGQAQARYLGRSGEVAALAQTIAGHQNAALDVAGAVVLMDGRALLTRRIDDG 603
Cdd:pfam00577 398 NTGVYGTLL-DDNLSYSVNAGRAsDGRHTGSGNLSYQGSYGTVSGSYSYGRDYRQLNYSVSGGIVAHAHGVTLSQYLGDT 476
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 740974118 604 FALVSTDASPGVPVlhENRLIGTTDRNGYLLIPDLNAYQNNRIGIDTLKLPLDARVSDTIRNVVPQSRSGVLAHF 678
Cdd:pfam00577 477 RALIDAPGAAGVRV--NNQTGVKTDWRGYAVVPYLTPYRENRVELDTNDLPDDVDLENTVVQVVPTEGAVVYARF 549
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| FimD |
COG3188 |
Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures]; |
8-763 |
0e+00 |
|
Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures];
Pssm-ID: 442421 [Multi-domain] Cd Length: 817 Bit Score: 545.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 8 PPARSALPGPTTSLPVPSADATVPASDLYLGVSLNGQPT-RLIVHFVVADG----RFYASQDDLNDIGVATSRLRQ---P 79
Cdd:COG3188 30 PAFLDGDDAAAIDLSRFSRGNYVPPGTYYLDVYVNGQPLgRGDITFVADRDdgrlQPCLTPELLEQLGLKLDALPAllaA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 80 ANALIALDALDGLRYRYDAARQTIDLDAPDSLRIPHTFDtrALAPTVPASAGRGVVLNYDLYAQTADRASAALwHEARYF 159
Cdd:COG3188 110 DGQCVDLSAIPGASVRFDFATQRLDLSVPQAALPYQARG--YVPPSLWDDGIPALLLNYDLNASRSRGRSGSA-SESRYL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 160 D-PAGVFSSTGVA-------YLQHGGQRYTRYDTSWSMSDPKSLTTTQFGDTISSSlAWTRSLRVAGLQWRSNFALRPDL 231
Cdd:COG3188 187 GlNSGLNLGAWRLrnnssysYSSGGGSGWQRLDTYLQRDIPALRSQLTLGDSYTSS-DWFDSVRFRGVQLASDFRMLPDS 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 232 VTFPVPALAGTAVVPSTVDLYVNGVRQFSGDVPSGPFVINSVPGITGAGNATVVTRDALGRTIATSLPLYIDTRMLAPGL 311
Cdd:COG3188 266 LRGYAPVVRGIAASNATVTVRQNGYVIYQTTVPPGPFEINDLPPTGGAGDLDVTVTEADGREQTFTVPFASVPQLLRPGL 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 312 ASYSVEAGFLRRAwglRSFDYAPrPAVSATARYGVSERLTVEAHAEATPGLYNAGAGALVRLGGA------GVASASAAQ 385
Cdd:COG3188 346 SRYSLAAGRYRRN---GSFDYGP-PFAQGTLRYGLSNGLTLYGGAEAAEDYQAGGLGAGFNLGALgalsadVTQSRARLP 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 386 SAGRLAGTQAGLGYQLVLPR----FSIDAQTlRAFGQYGDLA----ARDGTPVASA-----TDRVTLSLPFIRSQTFAIS 452
Cdd:COG3188 422 DDDTGSGQSYRLGYSKSFDEtgtnFSLAGYR-YSTRGYRDLSdaldARDSGGDNSSyrprsRFQATLSQSLGDGGSLYLS 500
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 453 YIGLRYPG-LQTARIGSVSYSVNVGNLaSINVSAFQDFHQHDS--RGVFVSLNVALGNRTSVNANVGR-QNGKTVYNVNA 528
Cdd:COG3188 501 YSQQDYWDgSGRTRSYSLGYSNSLRNI-SYSLSASRSRNGGGRrdRSVSLSLSIPLGNRSSASYSLSRdNGGGTSQQVGL 579
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 529 MRAPDYGGGFGWSAQTG--DAGGVRYGQAQARYLGRSGEVAALAQTIAGHQNAALDVAGAVVLMDGRALLTRRIDDGFAL 606
Cdd:COG3188 580 SGSAPEDGGLGYSLSAGygSGGDGNSGSANLSYRGSYGTLSAGYSYSRGYRQVSAGASGGLVAHAGGVTLSRRLGDTFAL 659
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 607 VSTDASPGVPVLHENrlIGTTDRNGYLLIPDLNAYQNNRIGIDTLKLPLDARVSDTIRNVVPQSRSGVLAHFAIAREQSA 686
Cdd:COG3188 660 VDAPGAAGVPVNNER--GGRTDRRGYALVPYLTPYRRNRVSIDPLDLPDDVELDNTEQRVVPTRGAGVLVRFPTRRGRRA 737
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 740974118 687 SIVLEDASGAPLPAGLSVSHRESGASTIVGYDGLTFVTGLAAANHLEIT--GHGKRCAVAFDYVRPADGTPPTIGPLVC 763
Cdd:COG3188 738 LLTLRDADGKPLPFGAEVTDEGGQEVGIVGQDGQVYLSGLPPQGTLTVKwgDGAQQCRASYTLPASADGQGIPRLPLTC 816
|
|
| PRK15213 |
PRK15213 |
outer membrane usher protein PefC; |
89-701 |
1.52e-23 |
|
outer membrane usher protein PefC;
Pssm-ID: 237926 [Multi-domain] Cd Length: 797 Bit Score: 106.37 E-value: 1.52e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 89 LDGLRYRYDAARQTIDLDAPDSLRIPHTFDTRALAPTVP----------------ASAGRgvvLNYDLYAQTADRASAAL 152
Cdd:PRK15213 101 LEYYRSGYDAARQCYVLSKAPSVQVDFDYSTQSLTLSIPqaglvkkpepvewdygVPAFR---LNYSANASKTSRQNTSA 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 153 WHEARYFDPAG--VFSSTGVAYLQHGGQRYTRYDTSWSMSDPKSLTT------TQFGDTISSSLAWTrslrvaGLQWRSN 224
Cdd:PRK15213 178 YGNADLKANLGrwVLSSRASASRGAGGSNEFTTNDFTLTTAIKSLQGdllvgkTQTGNSLLGSFGFY------GASLRSN 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 225 FALRPDLVTFPVPALAGTAVVPSTVDLYVNGVRQFSGDVPSGPFVINSVPGiTGAGNATVVTRDALGRTIATSLPLYIDT 304
Cdd:PRK15213 252 NDMLPWENRGYAPVISGIANGPSRVTISQNGYTLYSEVVPAGPFQLDDVPL-VGSGDLTVTVEEEDGHKTTQVFPVAVLP 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 305 RMLAPGLASYSVeagflrrAWGLRSFDY---APRPAVSATARYGVS-ERLTVEAHAEATPGLYNAGAGALVrlggagvas 380
Cdd:PRK15213 331 GLLRPGEHEYNV-------AAGLKDDNYdlkKPENGLFFAGSYGYGfDGLTLNAAGILNQNYQGGGVGVVQ--------- 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 381 asaaqsagrlagtqaGLGYqlvLPRFSIDAQTLRAfgQYGDLAARDGTPVA-----SATDRVTLSL-------------- 441
Cdd:PRK15213 395 ---------------GLGY---FGAVSASGNLSQA--KYQNGDNKSGNSVSlkyakSLSDTNNLQLlsyryqsegyvdfa 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 442 PFIRSQTFAISYIGLRYPGLQTARIGSVSYSVNV-----------GNLASINVSAFQDFHQ----------------HDS 494
Cdd:PRK15213 455 DFYPTDLYTRSNTKRRYEDIFSQGLSQSLFFLSLsgwqedywpssGKETGATVSLSTTIKGvsvnlngsyskrnslgEND 534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 495 RGVFVSLNVAL-----------------GNRTSVNANV-GRQNGKTVYNVNAMRapDYGGGFGWSAQtgdaggvrygqaq 556
Cdd:PRK15213 535 YSASLSISIPFtlfdkrhysstsvsysrSGGTGFNSGVsGSLNDRLSYGLNTNR--DRDGGRSSSLN------------- 599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 557 ARYLG-RSGEVAALAQTIAGHQNAALDVAGAVVLM-DGRALLTRRIDDGFALVSTDASPGVPVLHEnrliGTTDRNGYLL 634
Cdd:PRK15213 600 ASYGFdRAQTNGMLSHQGGGNTSGSVSVSGSVLGTpDAGILFTRVTGDTVAVVNVKDVPGVKFNGS----GPTDSKGNTV 675
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 740974118 635 IPdLNAYQNNRIGIDTLKLPLDARVSDTIRNVVPQSRSGVLAHFAIAREQSASIVLEDASGAPLPAG 701
Cdd:PRK15213 676 VP-LSSYDLNTVTVNAENLPLNTELTTTSQNVVPTDKAVVYREFKALKVLRYILRVKQKDGRFVPGG 741
|
|
| PRK15223 |
PRK15223 |
fimbrial biogenesis outer membrane usher protein; |
237-746 |
3.00e-21 |
|
fimbrial biogenesis outer membrane usher protein;
Pssm-ID: 185145 [Multi-domain] Cd Length: 836 Bit Score: 99.32 E-value: 3.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 237 PALAGTAVVPSTVDLYVNGVRQFSGDVPSGPFVINSVPGITGAGNATVVTRDALGRTIATSLPLYIDTRMLAPGLASYSV 316
Cdd:PRK15223 275 PVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 317 EAGflrrawGLRSFDYAPRPA--VSATARYGVSERLTVEAHAEATP--GLYNAGAGALVRLGGAGVASASAAQSAGRLAG 392
Cdd:PRK15223 355 LAG------RYRSSDSATDKAqiAQATLMYGLPWNLTAYGGIQSAThyQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEA 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 393 TQAGLGYQL-------------VLPRFSIDAQTLRAFGQYGDLAARDGTPVAS------ATDRVTLSL-----PFIRSQT 448
Cdd:PRK15223 429 VQQGASWRLrysnqltatgtnfFLTRWQYASQGYNTLSDVLDSYRHDGNRLWSwrenlqPSSRTTLMLsqswgRHLGNLS 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 449 FAISYIGLRY-PGLQ-------TARIGSVSYSVNVGNLASINVSAfqDFHQHDSRGVFVSLNVALGNRTSVNANVgrqng 520
Cdd:PRK15223 509 LTGSRTDWRNrPGHDdsyglswGTSIGGGSLSLNWNQNRTLWRNG--AHRKENITSLWFSMPLSRWTGNNVSASW----- 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 521 ktvynvnAMRAPDYGGG--------------FGW----SAQTGDAGGVRYGQA-QARYLGRSGEVAALAQTIAGHQNAAL 581
Cdd:PRK15223 582 -------QMTSPSHGGQtqqvgvngeafsqqLDWevrqSYRADAPPGGGNNSAlHLAWNGAYGLLGGDYSYSRAMRQMGV 654
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 582 DVAGAVVLMDGRALLTRRIDDGFALVSTDASPGVPVlhENRLIGTTDRNGYLLIPDLNAYQNNRIGIDTLKLPLDARVSD 661
Cdd:PRK15223 655 NIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPV--GGWPGVKTDFRGDTTVGNLNVYQENTVSLDPSRLPDDAEVTQ 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 662 TIRNVVPQSRSGVLAHFAIAREQSASIVLEDASGAPLPAGLSVS-HRESGASTIVGYDGLTFVTGLAAANHLEITGHGKR 740
Cdd:PRK15223 733 TDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTvNGQDGSAALVDTDSQVYLTGLADKGELTVKWGAQQ 812
|
....*.
gi 740974118 741 CAVAFD 746
Cdd:PRK15223 813 CRVNYQ 818
|
|
| Usher |
pfam00577 |
Outer membrane usher protein; In Gram-negative bacteria the biogenesis of fimbriae (or pili) ... |
237-678 |
4.88e-20 |
|
Outer membrane usher protein; In Gram-negative bacteria the biogenesis of fimbriae (or pili) requires a two- component assembly and transport system which is composed of a periplasmic chaperone and an outer membrane protein which has been termed a molecular 'usher'. The usher protein is rather large (from 86 to 100 Kd) and seems to be mainly composed of membrane-spanning beta-sheets, a structure reminiscent of porins. Although the degree of sequence similarity of these proteins is not very high they share a number of characteriztics. One of these is the presence of two pairs of cysteines, the first one located in the N-terminal part and the second at the C-terminal extremity that are probably involved in disulphide bonds. The best conserved region is located in the central part of these proteins.
Pssm-ID: 425762 [Multi-domain] Cd Length: 549 Bit Score: 94.68 E-value: 4.88e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 237 PALAGTAVVPSTVDLYVNGVRQFSGDVPSGPFVINSVPGITGAGNATVVTRDALGRTIATSLPLYIDTRMLAPGLASYSV 316
Cdd:pfam00577 87 PVIRGIARTNARVTIRQNGYVIYQTLVPPGPFEITDLYPTGSSGDLDVTVEEADGSVQTFTVPYSSVPLLLRPGQVRYSL 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 317 EAGFLRRawglrSFDYAPRPAV-SATARYGVSERLTVEAHAEATPGLYNAGAGALVRLGGAGVASASAAQSAGRLAGTQA 395
Cdd:pfam00577 167 AAGRYRS-----GNSDQESPFFfQATASWGLPNGLTLYGGLQGADDYQAAALGLGRNLGDLGALSVDVTQSRSQLDNQSS 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 396 GLGYQLvlpRFSIdAQTLRAFGQYGDLAA------------------RDGTPVASATDR------VTLSLPFIRSQTFAI 451
Cdd:pfam00577 242 EQGQSY---RFLY-NKSLNETGTNFQLAGyrystrgfytladaldarMDGFDYYNLTYNkknsyqLNVSQSLGGWGSLYL 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 452 SYIGLRYPGL-QTARIGSVSYSVNVGNLA-SINVSAFQDFHQHDS-RGVFVSLNVALGNRTS-VNANVG---RQNGKTVY 524
Cdd:pfam00577 318 SGSRQTYWGTsGTSYNLQLGYNTNIGRVSvSLSWSYSRNEYENGEdDLLYLNLSIPFGRGLSrANSSYSmtrNNSGRTTS 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 525 NVNAMRAPDyGGGFGWSAQTGDA-GGVRYGQAQARYLGRSGEVAALAQTIAGHQNAALDVAGAVVLMDGRALLTRRIDDG 603
Cdd:pfam00577 398 NTGVYGTLL-DDNLSYSVNAGRAsDGRHTGSGNLSYQGSYGTVSGSYSYGRDYRQLNYSVSGGIVAHAHGVTLSQYLGDT 476
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 740974118 604 FALVSTDASPGVPVlhENRLIGTTDRNGYLLIPDLNAYQNNRIGIDTLKLPLDARVSDTIRNVVPQSRSGVLAHF 678
Cdd:pfam00577 477 RALIDAPGAAGVRV--NNQTGVKTDWRGYAVVPYLTPYRENRVELDTNDLPDDVDLENTVVQVVPTEGAVVYARF 549
|
|
| PRK15294 |
PRK15294 |
fimbrial outer membrane usher protein; |
62-732 |
2.17e-16 |
|
fimbrial outer membrane usher protein;
Pssm-ID: 185194 [Multi-domain] Cd Length: 845 Bit Score: 83.64 E-value: 2.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 62 SQDDLNDIGVATS---RLRQPANALIALDALDGLRYRYDAARQTIDLDAPdslRIPHTFDTRALAPTVPASAG-RGVVLN 137
Cdd:PRK15294 97 SVEQLKQWGVKTEnfpELKNDPNGCTDLSLLAGAVAKFNVIGNRLDLAIP---QIALIADPREFVPTSEWDEGiNAFLLN 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 138 YDLYAQT-----ADRASAALWHEARYFDPAGVFSSTGVAYLQHGGQRYTRYDTSWSM--SDPKSLTTTQFGDTISSSLAW 210
Cdd:PRK15294 174 YSFTGSQdhdidENRTENSEYANLRPGINIGAWRFRNYSTWNHDSDGQNSWDSAYTYvsRDIEFLKGQLIAGENNTPADV 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 211 TRSLRVAGLQWRSNFALRPDLVTFPVPALAGTAVVPSTVDLYVNGVRQFSGDVPSGPFVINSVPGITGAGNATVVTRDAL 290
Cdd:PRK15294 254 FDSISFKGVQISSDDDMLPDSMKGFAPVIRGVAKSSAQVTVEQNGYTIYKTNVPAGPFAINDLYPTGGSGDLYVTIKESD 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 291 GRTIATSLPLYIDTRMLAPGLASYSVEAGFLRRAwglrSFDYAPRPAVSATARYGVSERLTVEAHAEATPG--LYNAGA- 367
Cdd:PRK15294 334 GSEQHFIVPYASVPVLQREGHLKYDLTVGRTRSS----DTHSAQQNFAELTALYGLAGGITAYGGIESTLSndVYHAALi 409
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 368 ------GALVRLGGAGVASASAAQSAGRLAGTQAGLGYQLvlpRFSIDAQTL--------------------RAFGQYGD 421
Cdd:PRK15294 410 gtglnlGDLGALSLDVTNSWSKIKAGDVVSDTLTGQSWRI---RYSKDIQSTgtnftvagyrystkdyyaleDVLDTYSD 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 422 LAARDGtpVASATDrVTLSLPFIRSQTFAISYIGLRYPGLQTARIG--------SVSYSVNVGNLASINVSAFQDFHQHD 493
Cdd:PRK15294 487 NSHYDH--VRNRTD-LSLSQDIIYGSISLTLYNEDYWNDTHTTSLGigynntwhNVSYGINYSYTLNADNSQDEDDDTED 563
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 494 SRGVFVSLNVAL-------GNRTSVNANVGRqNGKTVYNVNAMRAPDYGGGFGWSAQTGDAGGVR--YGQAQARYLGRSG 564
Cdd:PRK15294 564 SNDQQISINISIpldafmpSTYATYNMNSAK-DGDTTHTVGLNGTALAQKNLSWSVQEGYSSQEKatSGNVSATYNGTYA 642
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 565 EVAALAQTIAGHQNAALDVAGAVVLMDGRALLTRRIDDGFALVSTDASPGVPVLHENRLigTTDRNGYLLIPDLNAYQNN 644
Cdd:PRK15294 643 DINGGYSYDNHMRRLNYGVQGGVLLHRNGLTLSQPMDDTIILVKAPGAAGVPVNNETGV--DTDFRGYAVVPYASPYHRN 720
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 645 RIGIDTLKLPLDARVSDTIRNVVPQSRSGVLAHFAIAREQSASIVLEDASGAPLPAGLSVSH--RESGASTIVGYDGLTF 722
Cdd:PRK15294 721 EVSLDTTGIRKNIELIDTSKTLVPTRGAVVRAEYKTNIGYKALMVLTRINNLPVPFGATVSSltKPDNHSSFVGDAGQAW 800
|
730
....*....|
gi 740974118 723 VTGLAAANHL 732
Cdd:PRK15294 801 LTGLEKQGRL 810
|
|
| PRK09828 |
PRK09828 |
putative fimbrial outer membrane usher protein; Provisional |
213-760 |
1.44e-11 |
|
putative fimbrial outer membrane usher protein; Provisional
Pssm-ID: 182098 [Multi-domain] Cd Length: 865 Bit Score: 68.23 E-value: 1.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 213 SLRVAGLQWRSNFALRPDLVTFPVPALAGTAVVPSTVDLYVNGVRQFSGDVPSGPFVINSVpGITGAGNATVVT---RDA 289
Cdd:PRK09828 261 SVSIRGIRLYSDSRMLPPGLASYAPIIRGVANSNAKVTITQSGYKIYETTVPPGAFVIDDL-SPSGYGSDLIVTieeADG 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 290 LGRTIatSLPLYIDTRMLAPGLASYSVEAGFLRRAwglrsfDYAPRPAVS-ATARYGVSERLTVEAHAEATPGLYNAGAG 368
Cdd:PRK09828 340 SKRTF--SQPFSSVVQMLRPGVGRWDISAGQVLDD------SLQDEPNLGqASYYYGLNNYLTGYTGIQYTDNNYTAGLL 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 369 ALVRLGGAGVASASAAQSAGRLA--GTQAGLGYQLVLP---------------RFSI-------DAQTLRAFGQYGDLAA 424
Cdd:PRK09828 412 GLGMNTSVGAFAFDVTHSNAEIPddKTYQGQSYRLTWNklfeatstsfnvaayRYSTqdylglnDALTLIDEVKHPEQDL 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 425 RDGT--PVASATDRVTLSLpfirSQTFAISYigLRYPGLQTAriGSVS-----------YSVNVGNLA-----SINV--S 484
Cdd:PRK09828 492 EPKSmrNYSRMKNQVTVSI----NQPLKFEK--KDYGSFYLS--GSWSdywasgqsrsnYSVGYSNSAswgsySVSLqrS 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 485 AFQDFHQHDS------------------RGVFVSLNVAL------GNRTSVNANVGRQNGKTVYNVNAmrapdyggGFGW 540
Cdd:PRK09828 564 WNEDGEKDDSvylsfsipienllgterrSSGFQSIDTQLnsdfkgNNQLNVSSSGNSEDNRISYSVNT--------GYSM 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 541 SAQTGDAGGVR-YGQAQARYLGRSGEVAAlaqTIAGHQNAALDVAGAVVLMDGRALLTRRI---DDGFALVSTDASPGVP 616
Cdd:PRK09828 636 NKNSKDLSYVGgYASYESPWGTLSGSASA---SSDNSRQYSLSTDGGFVLHSGGLTFSNDSfsdSDTLALVKAPGAKGAR 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 617 VLHENrliGTTDRNGYLLIPDLNAYQNNRIGIDTLKLPLDARVSDTIRNVVPQSRSGVLAHFAIAREQSASIVLEDASGA 696
Cdd:PRK09828 713 INYGN---STIDRWGYGVTSALSPYRENRVALDINTLENDVELKSTSAVAVPRQGAVVLADFETDQGRSAIMNITRSDGK 789
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 740974118 697 PLPAGLSVSHRESGASTIVGYDGLTFVTGLAAANHLEIT----GHGKRCAVAfdYVRPAdgTPPTIGP 760
Cdd:PRK09828 790 NIPFAADVYDEQGNVIGNVGQGGQAFVRGIEDQGELRIRwleeGKPVSCLAH--YQQPA--TAEKIGQ 853
|
|
| PRK15248 |
PRK15248 |
fimbrial outer membrane usher protein; |
176-745 |
3.32e-11 |
|
fimbrial outer membrane usher protein;
Pssm-ID: 185160 [Multi-domain] Cd Length: 853 Bit Score: 66.79 E-value: 3.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 176 GGQRYtRYDT--SWSMSDPKSLTTT-QFGDTISSSLAWTrSLRVAGLQWRSNFALRPDLVTFPVPALAGTAVVPSTVDLY 252
Cdd:PRK15248 214 SGSAW-RYNSvrTWVQRPVASINSIlSLGDSYTDSSLFG-SLSFNGIKLVTDERMRPQGKRGYAPEVRGVAASSAHVVVK 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 253 VNGVRQFSGDVPSGPFVINSVPGITGAGNATVVTRDALGRTIATSLPLYIDTRMLAPGLASYSVEAGFLRRAWGLRSfdy 332
Cdd:PRK15248 292 QLGKVIYETNVPPGPFYIDDLYNTRYQGDLEVEVIEASGKTSRFTVPYSSVPDSVRPGNWHYSLAFGRVRQYYDIEN--- 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 333 aprPAVSATARYGVSERLTVEA--------HAEATPGLYNAGAGALvrlGGAGVASASAAQSAGRLAGTQAGLGY----- 399
Cdd:PRK15248 369 ---RFFEGTFQHGVNNTITLNLgsriaqryQAWLAGGVWATGMGAF---GLNATWSNARAEHNDRQQGWRAELSYsktft 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 400 ---QLVLPRFSIDAQTLRAFGQYGDLAARDGTPVASATDRV--------TLSLPFIRSQTFAISYIGLRYPGLQTaRIG- 467
Cdd:PRK15248 443 tgtNLVLAAYRYSTNGFRDLQDVLGVRREAKTGIDYYSDTLhqrnrlsaTVSQPLGRLGTLNLSASTADYYNNQS-RITq 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 468 ----------SVSYSVNVGNLASI--------NVSAFQDFHQHD-------SRGVFVSLNVAlGNRTSVNANV--GRQNG 520
Cdd:PRK15248 522 lqmgysnqwrNISYGVNIARQRTTwdydrfyhGVNEPLDVSSRQkytettmSFNVSIPLDWG-ENRTSVAMNYnqSSQSR 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 521 KTVYNVNAMRAPDygGGFGWSAQTG---DAGGVRYGQAQARYLG------RSGEVAALAQTIAGHQNAALDVAGAVVLMD 591
Cdd:PRK15248 601 SSTVSMTGSSGEN--SDLSWSVYGGyerYRNSNSDSSAPTTFGGnlqqntRFGALRANYDQGDNYRQEGLGASGTLVLHP 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 592 GRALLTRRIDDGFALVSTDASPGVPVlhENRLIGTTDRNGYLLIPDLNAYQNNRIGIDTLKLPLDARVSDTIRNVVPQSR 671
Cdd:PRK15248 679 GGLTAGPYTSDTFALIHADGAQGAIV--QNGQGAVVDRFGYAILPSLSPYRVNNVTLDTRKMRSDAELTGGSQQIVPYAG 756
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 740974118 672 SGVLAHFAIAREQSASIVLEDASGAPLPAGLSVSHRESGASTIVGYDGLTFVTGLAAANHLEI---TGHGKRCAVAF 745
Cdd:PRK15248 757 AIARVNFATISGKAVLISVKMPDGGIPPMGADVFNGEGTNIGMVGQSGQIYARIAHPSGSLLVrwgTGANQRCRVAY 833
|
|
| PRK15235 |
PRK15235 |
outer membrane fimbrial usher protein SefC; Provisional |
557-732 |
4.20e-10 |
|
outer membrane fimbrial usher protein SefC; Provisional
Pssm-ID: 185150 [Multi-domain] Cd Length: 814 Bit Score: 63.21 E-value: 4.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 557 ARYLGRSGEVAALAQTIAGHQNAALDVAGAVVLMDGRALLTRRIDDGFALVSTDASPGVPVLHenrLIGT-TDRNGYLLI 635
Cdd:PRK15235 603 ASWRGTYGEIGANYSHNEINRDIGMNVSGGVIAHSSGITFGQSISDTAALVEAKGVSGAKVLG---LPGVrTDFRGYTIS 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 636 PDLNAYQNNRIGIDTLKLPLDARVSDTIRNVVPQSRSGVLAHFAIAREQSASIVLEDASGAPLPAGLSVSHRESG----A 711
Cdd:PRK15235 680 SYLTPYMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSVGTNALIRITRTNGKPLALGTVLSLKNNDgviqS 759
|
170 180
....*....|....*....|.
gi 740974118 712 STIVGYDGLTFVTGLAAANHL 732
Cdd:PRK15235 760 TSIVGEDGQAYVSGLSGVQKL 780
|
|
| PapC_C |
pfam13953 |
PapC C-terminal domain; The PapC C-terminal domain is a structural domain found at the ... |
688-747 |
2.62e-09 |
|
PapC C-terminal domain; The PapC C-terminal domain is a structural domain found at the C-terminus of the E. coli PapC protein. Pili are assembled using the chaperone usher system. In E.coli this is composed of the chaperone PapD and the usher PapC. This domain represents the C-terminal domain from PapC and its homologs. This domain has a beta-sandwich structure similar to the plug domain of PapC.
Pssm-ID: 464055 [Multi-domain] Cd Length: 66 Bit Score: 53.76 E-value: 2.62e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 740974118 688 IVLEDASGAPLPAGLSVSHRESGASTIVGYDGLTFVTGLAAANHLEIT---GHGKRCAVAFDY 747
Cdd:pfam13953 2 LTLTDADGKPLPFGATVTDEGGGQSGIVGQDGQVYLRGLPDQGRLRVKwgdGAGQQCRASYTL 64
|
|
| PRK15298 |
PRK15298 |
fimbrial outer membrane usher protein; |
541-726 |
5.10e-09 |
|
fimbrial outer membrane usher protein;
Pssm-ID: 185198 [Multi-domain] Cd Length: 848 Bit Score: 59.77 E-value: 5.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 541 SAQTGDAGGVrygqaQARYLGRSGEVAALAQTIAGHQNAALDVAGAVVLMDGRALLTRRIDDGFALVSTDASPGVPVlhE 620
Cdd:PRK15298 630 STQDGDSGGV-----NASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQPITGAAILIKAPGASGVSV--E 702
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 621 NRLIGTTDRNGYLLIPDLNAYQNNRIGIDTLKLPLDARVSDTIRNVVPQSRSGVLAHFAIAREQSASIVLEDASGAPLPA 700
Cdd:PRK15298 703 NQTGVATDFRGYTVIPNVTPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRVLLTLTRSNGEPVPF 782
|
170 180
....*....|....*....|....*...
gi 740974118 701 G--LSVSHRESGASTIVGYDGLTFVTGL 726
Cdd:PRK15298 783 GatASVDGQDANLASIVGDKGQVFLSGL 810
|
|
| PRK15193 |
PRK15193 |
outer membrane usher protein; Provisional |
506-734 |
9.71e-09 |
|
outer membrane usher protein; Provisional
Pssm-ID: 237919 [Multi-domain] Cd Length: 876 Bit Score: 58.77 E-value: 9.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 506 GNRTSVNANVGRQNGKTVYNVNAmrAPDYGGGFGwSAQTGDAGGVRYGQAQARYlGRSGEVAALAQTIA-----GHQNAA 580
Cdd:PRK15193 643 DNNLSYSVQQGYNNEGKGASGSA--SLDYKGAFG-DANVGYNYSDNGSQQQLNY-GLSGGLVAHSQGITlsqplGETNVL 718
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 581 LDVAGAvvlmdgralltrriddgfALVSTDASPGVpvlhenrligTTDRNGYLLIPDLNAYQNNRIGIDTLKLPLDARVS 660
Cdd:PRK15193 719 IAAPGA------------------ENVRVANSTGL----------KTDWRGYAVVPYATSYRENRIALDAASLKDNVDLE 770
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 740974118 661 DTIRNVVPQSRSGVLAHFAiAREQSASIVLEDASGAPLPAGLSVSHRESGASTIVGYDGLTFVTGLAAANHLEI 734
Cdd:PRK15193 771 NAVVNVVPTKGALVLAEFN-AHVGARALMTLSHQGIPLPFGATVTLDDQHNSGIVDDDGSVYLSGLPAQGVLHV 843
|
|
| PRK15284 |
PRK15284 |
putative fimbrial outer membrane usher protein StfC; Provisional |
469-762 |
1.17e-08 |
|
putative fimbrial outer membrane usher protein StfC; Provisional
Pssm-ID: 185184 [Multi-domain] Cd Length: 881 Bit Score: 58.72 E-value: 1.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 469 VSYSVNVGNLASINVSAFQDFHQHDS---RGVFVSLNVALGNRTSVNANVGRQNGKTVYNVNAMRAPDYGGGFGWSAQTG 545
Cdd:PRK15284 547 LSHYFNMGSIRNMSISVTGYRYEYDNqadKGVYISLSIPWGDNSTVSYNGNYGSGSDSSQVGYFSRVDDATHYQLNVGTS 626
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 546 DAGGVRYGqaqarYLGRSGEVAALAQTIAGHQ----NAALDVAGAVVLMDGRALLTRRIDDGFA--LVSTDASPGVPVlH 619
Cdd:PRK15284 627 DNHTSVDG-----YYSHDGSLAQVDLSANYHEgqytSAGLSLQGGATLTAHGGALHRTQNMGGTrlLIDADGVANVPV-E 700
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 620 ENRLIGTTDRNGYLLIPDLNAYQNNRIGIDTLKLPLDArvsDTIRNVVPQSRS-GVLAH--FAIAREQSASIVLEDASGA 696
Cdd:PRK15284 701 GNGAAVYTNMFGKAVVADVNNYYRNQAYIDLNNLPEDA---EATQSVVQATLTeGAIGYrkFAVISGQKAMAVLRLRDGS 777
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 697 PLPAGLSVSHRESGASTIVGYDGLTFVTGLAAANHLEITGHGK-RCAVAFDYVRPAD-----------------GTPPTI 758
Cdd:PRK15284 778 HPPFGAEVKNDNQQQVGLVDDDGNVYLAGVKPGEHMQVFWEGVaHCEINLPDPLPADlfnglllpcqqkgnsapATPPEI 857
|
....
gi 740974118 759 GPLV 762
Cdd:PRK15284 858 KPVI 861
|
|
| PRK15198 |
PRK15198 |
outer membrane usher protein FimD; |
583-764 |
7.15e-08 |
|
outer membrane usher protein FimD;
Pssm-ID: 185120 [Multi-domain] Cd Length: 860 Bit Score: 56.08 E-value: 7.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 583 VAGAVVLMDGRALLTRRIDDGFALVSTDASPGVPVlhENRLIGTTDRNGYLLIPDLNAYQNNRIGIDTLKLPLDARVSDT 662
Cdd:PRK15198 675 LSGGVVGHEDGITFSQPLGDTNVLIKAPGAGGVRI--ENQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMGNSTDVENN 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 663 IRNVVPQSRSGVLAHFAiAREQSASIVLEDASGAPLPAGLSVSHRESGASTIVGYDGLTFVTGLAAANHLEIT-GHGKRC 741
Cdd:PRK15198 753 VSSVVPTQGALVRANFD-TRIGVRALITVTQGGKPVPFGALVRETSSGITSMVGDDGQIYLSGLPLSGELLIQwGDGANS 831
|
170 180
....*....|....*....|....*
gi 740974118 742 AVAFDYVRPADGTPP--TIGPLVCD 764
Cdd:PRK15198 832 RCIAHYVLPEQSLQQaiTVISAVCT 856
|
|
| PRK15207 |
PRK15207 |
outer membrane usher protein LpfC; |
465-745 |
2.21e-07 |
|
outer membrane usher protein LpfC;
Pssm-ID: 185129 [Multi-domain] Cd Length: 842 Bit Score: 54.53 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 465 RIGSVSYSVNVgnlaSINVSAFQDfhqHDSRGVFVSLNVALGNRTSVNANVGRQNGKTVYNVNAMRAPDYGGGFGWSAQT 544
Cdd:PRK15207 545 RIGRVNYSVAY----TWTKSPEWD---ESDRLWSFSMSIPLGRAWSNYRMTTDQNGRTNQQLGVSGTLLEDRNLSYSVQE 617
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 545 G-DAGGVRY-GQAQARYLGRSGEVAALAQTIAGHQNAALDVAGAVVLMDGRALLTRRIDDGFALVSTDASPGVPVLHENR 622
Cdd:PRK15207 618 GyTSNGVGNsGSVNLGYQGGSGNISVGYNYSKDNQQVNYGVRGGVIVHSEGITLSQPLGESMAIISAPGARGAHVVNNGG 697
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 623 LigTTDRNGYLLIPDLNAYQNNRIGIDTLKLPLDARVSDTIRNVVPQSRSGVLAHFAIAREQSASIVLEDASGAPLPAGL 702
Cdd:PRK15207 698 V--EVDWMGNAVVPYLTPYRETEVSLRSDSLGQNVDLQEAFQKVVPTRGAIVRARFDTRVGYRVLMSLKQANGNAVPFGA 775
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 740974118 703 SVS--HRESGASTIVGYDGLTFVTGLAAANHLEIT---GHGKRCAVAF 745
Cdd:PRK15207 776 TATliDTTKEASSIVGEEGQLYISGMPEEGELQVSwgnDQAQQCRVPF 823
|
|
| PRK15304 |
PRK15304 |
putative fimbrial outer membrane usher protein; Provisional |
114-753 |
1.04e-05 |
|
putative fimbrial outer membrane usher protein; Provisional
Pssm-ID: 237937 [Multi-domain] Cd Length: 801 Bit Score: 48.98 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 114 PHTFDTRALAPTVPASAGRGVVLNYDLYAQ-------TADRASAAL--------WH-EARYF--DPAGVFSSTGV-AYLQ 174
Cdd:PRK15304 136 PEALDNDLLRLNNVIHGGTAALLNYSLFSSryeysggDSDYSQASLeagfnfadWTlRSRQFltDTDGEFSTDSLyTYAQ 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 175 HGGQRYTrydtswsmsdpkslTTTQFGD-TISSSLAWTRSlrVAGLQWRSNFALRPDLVTFPVPALAGTAvvPSTVDLYV 253
Cdd:PRK15304 216 HTFTDQK--------------TLMQVGQiNVNNSLFSGAS--IYGVQLMPENALQQDGSGVTVTGIARTS--QARVEIRQ 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 254 NGVRQFSGDVPSGPFVINSVPGITGAG--NATVVTRDALGRTI---ATSLPLYIDTRmlAPGLasySVEAGflrRAWGLR 328
Cdd:PRK15304 278 SGQLIYSTLVPAGAFTLDDVPVINGNTdlNVTVVETDGSTSHFtvpASSFNLNELSR--PQGL---TMAIG---RVRDTD 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 329 SfDYAPRPAVSATARYGVSERLTVEAHAEATPGLYNAGAGALVRLGGAGVASASAAQSAGRLAGTQAGLGYQL----VLP 404
Cdd:PRK15304 350 S-DYSQPWVYNASDGWRLTPWMNLLAGGVLAENYQAAGARLDWVPLPKWTVSASMLGSQDSFGDSLQGHKTELdagySLP 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 405 -RFSIDAQTLRAFGQYGDLAA---RDGTPVASAT-------DRV--TLSLPFIRSQTfAISYIGLRYPGL---QTARIGS 468
Cdd:PRK15304 429 gSLGLSVSTARYSDGYRELTEaldDDYYSYKSSYsanvnwsHSLlgTFSLGYYYNQA-TDGDNDSRYINAswgKTFKYAS 507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 469 VSysVNVGNLasinVSAFQDFHQhDSRGVFVSLNVALGNRTSVNANVGRQNGKTVYNVNAM------------------- 529
Cdd:PRK15304 508 VS--VNWQHA----VSQDDENSN-DDDMFYVNISIPLGRSRSINAYMRNQGDKTSYGLRNMgslsdntsyyvsadrdhde 580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 530 RAPDYGGGFGWS---AQTGDAGGVRyGQAQARYlgrsgeVAALAQTIAGHQnaaldvagavvlmDGRALLTRRIDDGFAL 606
Cdd:PRK15304 581 SENSFNGSLNSNlhyTQLSVGAGTD-GDDNRNY------NATLSGGIAAHD-------------QGVTFSPYTIKDTFAI 640
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 607 VSTD--------ASPGVPVLhenrligtTDRNGYLLIPDLNAYQNNRIGIDTLKLPLDARVSDTIRNVVPQSRSGVLAHF 678
Cdd:PRK15304 641 ARLDepvagveiATPQGPVW--------TDFWGQAVIPGLTEWRKSRVEVNTNTLPKNMDLANGTKMIKAAHGAVSKVDF 712
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 740974118 679 AIAREQSASIVLEDASGAPLPAGLSVSHRESGASTIVGYDGLTFVTGLAAANHLEITGHGKRCAVAFDYVRPADG 753
Cdd:PRK15304 713 SVLNQRRVMLNVKRADGSPLPKGVSIVDEKGNYLTSAVDDGRVFLNDIDDIPALYAKDDDMNRLCRIHYTLPEDQ 787
|
|
| PRK15273 |
PRK15273 |
fimbrial biogenesis outer membrane usher protein; |
468-760 |
1.53e-05 |
|
fimbrial biogenesis outer membrane usher protein;
Pssm-ID: 185176 [Multi-domain] Cd Length: 881 Bit Score: 48.61 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 468 SVSYSVNVGNLASINVSA---FQDFHQHDSRGVFVSLNVALGNrTSVNANvGRQNGKTVYNvnamrapdyGGGFGWSAQT 544
Cdd:PRK15273 524 SLSWYFDLGSIKNLSASLngyRSEYNGDKDDGVYISLSVPWGN-DSISYN-GTFNGSQHRN---------QLGYSGHSQN 592
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 545 GDAGGVRYGQ----AQAR-YLGRSGEVAALAQTI----AGHQNAALDVAGAVVLMDGRALLTRRIDDGFA--LVSTDASP 613
Cdd:PRK15273 593 GDNWQLHVGQdeqgAQADgYYSHQGALTDIDLSAdyeeGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTrlLVDTDGIA 672
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 614 GVPVlHENRLIGTTDRNGYLLIPDLNAYQNNRIGIDTLKLPLDARVSDTIRNVVPQSRSGVLAHFAIAREQSASIVLEDA 693
Cdd:PRK15273 673 DVPV-SGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLA 751
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 740974118 694 SGAPLPAGLSVSHRESGASTIVGYDGLTFVTGLAAANHLEITGHG-KRCAVAFdyvrpadgtPPTIGP 760
Cdd:PRK15273 752 DGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGaAQCEASL---------PPTFTP 810
|
|
| PRK15217 |
PRK15217 |
fimbrial outer membrane usher protein; Provisional |
192-723 |
2.13e-04 |
|
fimbrial outer membrane usher protein; Provisional
Pssm-ID: 185139 [Multi-domain] Cd Length: 826 Bit Score: 44.77 E-value: 2.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 192 PKSLTTTQFGDTISSSLAWTrSLRVAGLQWRSNFALRPDLVTFPVPALAGTAVVPSTVDLYVNGVRQFSGDVPSGPFVIN 271
Cdd:PRK15217 219 AQLLGTLRVGDMYTSSDIFD-SVRFSGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVTIEQNGFVVYQKEVPPGPFAIA 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 272 SVPGITGAGNATVVTRDALGRTIATSLPLYIDTRMLAPGLASYSVEAGFLRRAWGLRSFDYaprpaVSATARYGVSERLT 351
Cdd:PRK15217 298 DLQLAGGGADLDVSVKEADGSVTTYLVPYASVPNMLQPGVSKYDFAAGRSHIEGASKQSDF-----VQAGYQYGFNNLLT 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 352 ------VEAHAEA-TPGL-YNAGAGALvrlGGAGVASASAAQSAGRLAGTQAGLGYQLVLP----RFSIDA-----QTLR 414
Cdd:PRK15217 373 lyggtmLANNYYAfTLGTgWNTRIGAI---SVDATKSHSKQDNGDVFDGQSYQIAYNKYLSqtstRFGLAAwryssRDYR 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 415 AFGQY-----GDLAARDGTPVASATDRVTLSlpFIRSQTFAISYI-----GLRYPGLQT------ARIGS-----VSYSV 473
Cdd:PRK15217 450 TFNDHvwannKDNYRRDENDVYDIADYYQND--FGRKNSFSANISqslpeGWGSVSLSAlwrdywGRSGSskdyqLSYSN 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 474 NVGNLaSINVSAFQDF---HQHDSR-GVFVSL-------------NVALGNRTSVNaNVGRQNGKTVYNVNAMRAPDYGG 536
Cdd:PRK15217 528 NWQRI-SYTLSASQTYdenHHEEKRfNIFISIpfdwgddvttprrQIYLSNSTTFD-DQGFASNNTGLSGTAGSRDQFNY 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 537 GFGWSAQTGD----AGGVRYGQAQARYLGRSgevaaLAQTIAGHQNAAlDVAGAVVLMDGRALLTRRIDDGFALVStdaS 612
Cdd:PRK15217 606 GVNLSHQRQGnettAGANLTWNAPVATVNGS-----YSQSSNYRQAGG-SISGGLVAWSGGVNLANRLSDTFAIMN---A 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 740974118 613 PGVPVLHEN-RLIGTTDRNGYLLIPDLNAYQNNRIGIDTLKLPLDARVSDTIRNVVPQSRSGVLAHFAIAREQSASIVLE 691
Cdd:PRK15217 677 PGLEGAYVNgQKYRTTNRKGVVVYDGLTPYRENHLMLDVSQSDSETELRGNRKIAAPYRGAVVLVNFDTDQRKPWFIKAL 756
|
570 580 590
....*....|....*....|....*....|..
gi 740974118 692 DASGAPLPAGLSVSHRESGASTIVGYDGLTFV 723
Cdd:PRK15217 757 RADGQPLTFGYEVNDIHGHNIGVVGQGSQLFI 788
|
|
| |
