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Conserved domains on  [gi|742382425|ref|WP_038861552|]
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MULTISPECIES: NUDIX hydrolase YfcD [Cronobacter]

Protein Classification

NUDIX hydrolase( domain architecture ID 10015101)

NUDIX hydrolase YfcD

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK15393 PRK15393
NUDIX hydrolase YfcD; Provisional
2-181 5.82e-127

NUDIX hydrolase YfcD; Provisional


:

Pssm-ID: 185291 [Multi-domain]  Cd Length: 180  Bit Score: 354.49  E-value: 5.82e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425   2 VEQNHLAGMEWVDIVSEDNEVIAQSSRAQMRAERLRHRATYIVVHDGMGKILVQRRTDIKDFMPGMLDATAGGVVQAGEA 81
Cdd:PRK15393   1 VEQRRLASTEWVDIVNENNEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425  82 LLESARREAEEELGIAGVPFAEHGQFYFEDEHCRVWGGLFSCVSHGPFALQESEISEVCWMEPEEITARCDEFTPDTLKA 161
Cdd:PRK15393  81 LLESARREAEEELGIAGVPFAEHGQFYFEDENCRVWGALFSCVSHGPFALQEEEVSEVCWMTPEEITARCDEFTPDSLKA 160
                        170       180
                 ....*....|....*....|
gi 742382425 162 LSLWLSRNAGQESSKEREQE 181
Cdd:PRK15393 161 LALWLTRNAKNEAVETETAE 180
 
Name Accession Description Interval E-value
PRK15393 PRK15393
NUDIX hydrolase YfcD; Provisional
2-181 5.82e-127

NUDIX hydrolase YfcD; Provisional


Pssm-ID: 185291 [Multi-domain]  Cd Length: 180  Bit Score: 354.49  E-value: 5.82e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425   2 VEQNHLAGMEWVDIVSEDNEVIAQSSRAQMRAERLRHRATYIVVHDGMGKILVQRRTDIKDFMPGMLDATAGGVVQAGEA 81
Cdd:PRK15393   1 VEQRRLASTEWVDIVNENNEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425  82 LLESARREAEEELGIAGVPFAEHGQFYFEDEHCRVWGGLFSCVSHGPFALQESEISEVCWMEPEEITARCDEFTPDTLKA 161
Cdd:PRK15393  81 LLESARREAEEELGIAGVPFAEHGQFYFEDENCRVWGALFSCVSHGPFALQEEEVSEVCWMTPEEITARCDEFTPDSLKA 160
                        170       180
                 ....*....|....*....|
gi 742382425 162 LSLWLSRNAGQESSKEREQE 181
Cdd:PRK15393 161 LALWLTRNAKNEAVETETAE 180
NUDIX_Hydrolase cd04697
uncharacterized NUDIX hydrolase subfamily; NUDIX hydrolase is a superfamily of enzymes found ...
13-167 4.04e-71

uncharacterized NUDIX hydrolase subfamily; NUDIX hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of NUDIX hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.


Pssm-ID: 467578 [Multi-domain]  Cd Length: 157  Bit Score: 212.48  E-value: 4.04e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425  13 VDIVSEDNEVIAQSSRAQMRAERLRHRATYIVVHDGMGKILVQRRTDIKDFMPGMLDATAGGVVQAGEALLESARREAEE 92
Cdd:cd04697    1 VDIVDENNEVVGAATRAEMRRQKLIHRATYIVVRNAAGRLLVQKRTMDKDYCPGYLDPATGGVVGAGESYEENARRELEE 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 742382425  93 ELGIAGVPFAEHGQFYFEDEHCRVWGGLFSCVSHGPFALQESEISEVCWMEPEEIT--ARCDEFTPDTLKALSLWLS 167
Cdd:cd04697   81 ELGIDGVPLRPLFTFYYEDDRSRVWGALFECVYDGPLKLQPEEVAEVDWMSEDEILqaARGEEFTPDGRVALERYLA 157
Idi COG1443
Isopentenyldiphosphate isomerase [Lipid transport and metabolism]; Isopentenyldiphosphate ...
10-157 1.20e-41

Isopentenyldiphosphate isomerase [Lipid transport and metabolism]; Isopentenyldiphosphate isomerase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 441052 [Multi-domain]  Cd Length: 162  Bit Score: 137.64  E-value: 1.20e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425  10 MEWVDIVSEDNEVIAQSSRAQMRAERLRHRATYIVVHDGMGKILVQRRTDIKDFMPGMLDATAGGVVQAGEALLESARRE 89
Cdd:COG1443    1 EELVDLVDEDGRPIGTAERAEVHRKGLLHRAFSVFVFNSDGRLLLQRRALTKDHWPGLWDNTVCGHPRAGETYEEAAVRE 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 742382425  90 AEEELGIAGV-PFAEHGQFYF-----EDEHCRVWGGLFSCVSHGPFALQESEISEVCWMEPEEITARCDE----FTPD 157
Cdd:COG1443   81 LEEELGITVDdDLRPLGTFRYravdaNGLVENEFCHVFVARLDGPLTPQPEEVAEVRWVTLEELLALLEAgpeaFTPW 158
NUDIX pfam00293
NUDIX domain;
36-147 2.23e-03

NUDIX domain;


Pssm-ID: 395229 [Multi-domain]  Cd Length: 132  Bit Score: 36.69  E-value: 2.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425   36 LRHRATYIVVHDGMGKILVQRRTDIKdfmPGMLDATAGGVVQAGEALLESARREAEEELGI--------AGVPFAEHGQF 107
Cdd:pfam00293   1 KRRVAVGVVLLNEKGRVLLVRRSKKP---FPGWWSLPGGKVEPGETPEEAARRELEEETGLepellellGSLHYLAPFDG 77
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 742382425  108 YFEDEHcrVWGGLFSCVSHGPFALQ-ESEISEVCWMEPEEI 147
Cdd:pfam00293  78 RFPDEH--EILYVFLAEVEGELEPDpDGEVEEVRWVPLEEL 116
 
Name Accession Description Interval E-value
PRK15393 PRK15393
NUDIX hydrolase YfcD; Provisional
2-181 5.82e-127

NUDIX hydrolase YfcD; Provisional


Pssm-ID: 185291 [Multi-domain]  Cd Length: 180  Bit Score: 354.49  E-value: 5.82e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425   2 VEQNHLAGMEWVDIVSEDNEVIAQSSRAQMRAERLRHRATYIVVHDGMGKILVQRRTDIKDFMPGMLDATAGGVVQAGEA 81
Cdd:PRK15393   1 VEQRRLASTEWVDIVNENNEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425  82 LLESARREAEEELGIAGVPFAEHGQFYFEDEHCRVWGGLFSCVSHGPFALQESEISEVCWMEPEEITARCDEFTPDTLKA 161
Cdd:PRK15393  81 LLESARREAEEELGIAGVPFAEHGQFYFEDENCRVWGALFSCVSHGPFALQEEEVSEVCWMTPEEITARCDEFTPDSLKA 160
                        170       180
                 ....*....|....*....|
gi 742382425 162 LSLWLSRNAGQESSKEREQE 181
Cdd:PRK15393 161 LALWLTRNAKNEAVETETAE 180
NUDIX_Hydrolase cd04697
uncharacterized NUDIX hydrolase subfamily; NUDIX hydrolase is a superfamily of enzymes found ...
13-167 4.04e-71

uncharacterized NUDIX hydrolase subfamily; NUDIX hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of NUDIX hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.


Pssm-ID: 467578 [Multi-domain]  Cd Length: 157  Bit Score: 212.48  E-value: 4.04e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425  13 VDIVSEDNEVIAQSSRAQMRAERLRHRATYIVVHDGMGKILVQRRTDIKDFMPGMLDATAGGVVQAGEALLESARREAEE 92
Cdd:cd04697    1 VDIVDENNEVVGAATRAEMRRQKLIHRATYIVVRNAAGRLLVQKRTMDKDYCPGYLDPATGGVVGAGESYEENARRELEE 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 742382425  93 ELGIAGVPFAEHGQFYFEDEHCRVWGGLFSCVSHGPFALQESEISEVCWMEPEEIT--ARCDEFTPDTLKALSLWLS 167
Cdd:cd04697   81 ELGIDGVPLRPLFTFYYEDDRSRVWGALFECVYDGPLKLQPEEVAEVDWMSEDEILqaARGEEFTPDGRVALERYLA 157
Idi COG1443
Isopentenyldiphosphate isomerase [Lipid transport and metabolism]; Isopentenyldiphosphate ...
10-157 1.20e-41

Isopentenyldiphosphate isomerase [Lipid transport and metabolism]; Isopentenyldiphosphate isomerase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 441052 [Multi-domain]  Cd Length: 162  Bit Score: 137.64  E-value: 1.20e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425  10 MEWVDIVSEDNEVIAQSSRAQMRAERLRHRATYIVVHDGMGKILVQRRTDIKDFMPGMLDATAGGVVQAGEALLESARRE 89
Cdd:COG1443    1 EELVDLVDEDGRPIGTAERAEVHRKGLLHRAFSVFVFNSDGRLLLQRRALTKDHWPGLWDNTVCGHPRAGETYEEAAVRE 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 742382425  90 AEEELGIAGV-PFAEHGQFYF-----EDEHCRVWGGLFSCVSHGPFALQESEISEVCWMEPEEITARCDE----FTPD 157
Cdd:COG1443   81 LEEELGITVDdDLRPLGTFRYravdaNGLVENEFCHVFVARLDGPLTPQPEEVAEVRWVTLEELLALLEAgpeaFTPW 158
NUDIX_Hydrolase cd04692
uncharacterized NUDIX hydrolase subfamily; NUDIX hydrolase is a superfamily of enzymes found ...
13-144 9.26e-17

uncharacterized NUDIX hydrolase subfamily; NUDIX hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of NUDIX hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.


Pssm-ID: 467574 [Multi-domain]  Cd Length: 142  Bit Score: 72.98  E-value: 9.26e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425  13 VDIVSEDNEVIAQSSRAQMRAERLRHRATYI-VVHDGMGKILVQRRTDIKDFMPGMLDATAGGVVQAGEALLESARREAE 91
Cdd:cd04692    1 LDIVDEDGRPIGVATRSEVHRQGLWHRTVHVwLVNPEEGRLLLQKRSANKDDFPGLWDISAAGHIDAGETYEEAAVRELE 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 742382425  92 EELGIAgVPFAE-----------HGQFYFEDEHCRVwgglFSCVSHGP---FALQESEISEVCWMEP 144
Cdd:cd04692   81 EELGLT-VSPEDliflgvireevIGGDFIDNEFVHV----YLYETDRPleeFKLQPEEVAGVVFVDL 142
NUDIX_Hydrolase cd04693
uncharacterized NUDIX hydrolase subfamily; NUDIX hydrolase is a superfamily of enzymes found ...
11-153 2.33e-08

uncharacterized NUDIX hydrolase subfamily; NUDIX hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of NUDIX hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.


Pssm-ID: 467575 [Multi-domain]  Cd Length: 157  Bit Score: 50.99  E-value: 2.33e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425  11 EWVDIVSEDNEVIAQSSRaqmRAERLRHRATYIVVH----DGMGKILVQRRTDIKDFMPGMLDATAGGVVQAGEALLESA 86
Cdd:cd04693    1 ELWDLYDENRNKTGRTHR---RGEPLPEGEYHLVVHvwifNSDGEILIQQRSPDKKGFPGMWEASTGGSVLAGETSLEAA 77
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 742382425  87 RREAEEELGIAgVPFAE-------HGQFYFEDehcrVWggLFSC-VSHGPFALQESEISEVCWMEPEEITARCDE 153
Cdd:cd04693   78 IRELKEELGID-LDADElrpiltiRFDNGFDD----IY--LFRKdVDIEDLTLQKEEVQDVKWVTLEEILEMIES 145
PLN02791 PLN02791
Nudix hydrolase homolog
38-146 6.47e-08

Nudix hydrolase homolog


Pssm-ID: 215425 [Multi-domain]  Cd Length: 770  Bit Score: 51.36  E-value: 6.47e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425  38 HRATYIVVH-DGMGKILVQRRTDIKDFMPGMLDATAGGVVQAGEALLESARREAEEELGIAGVPFAEHGQFYFEDEhCRV 116
Cdd:PLN02791  32 HRAVHVWIYsESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQE-CVI 110
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 742382425 117 WGG-----------LFSCVSHGP---FALQESEISEVCWMEPEE 146
Cdd:PLN02791 111 NDGkfinneyndvyLVTTLDPIPleaFTLQESEVSAVKYMSIEE 154
NUDIX_IPP_Isomerase cd02885
Isopentenyl diphosphate isomerase; Isopentenyl diphosphate (IPP) isomerase, a member of the ...
13-156 7.50e-06

Isopentenyl diphosphate isomerase; Isopentenyl diphosphate (IPP) isomerase, a member of the NUDIX hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the NUDIX motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mammals and plants. Despite sequence variations (mainly at the N-terminus), the core structure is highly conserved.


Pssm-ID: 467529 [Multi-domain]  Cd Length: 162  Bit Score: 44.02  E-value: 7.50e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425  13 VDIVSEDNEVIAQSSRAQM-RAERLRHRATYIVVHDGMGKILVQRRTDIKDFMPGMLDATAGGVVQAGEALLESARREAE 91
Cdd:cd02885    2 VILVDEDDNPIGTAEKLEAhRKGTLLHRAFSVFLFNSKGELLLQRRALSKYTWPGLWTNTCCSHPLPGEGVEDAAQRRLR 81
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 742382425  92 EELGIAGVPFAEHGQF-Y--------FEDEHCRVwgglFSCVSHGPFALQESEISEVCWMEPEEI----TARCDEFTP 156
Cdd:cd02885   82 EELGIPVCDLEELPRFrYratddnglVEHEIDHV----FVGRADGDPVPNPEEVSDYRWVSLEELrellAATPEAFTP 155
PRK03759 PRK03759
isopentenyl-diphosphate Delta-isomerase;
8-178 6.68e-04

isopentenyl-diphosphate Delta-isomerase;


Pssm-ID: 235156 [Multi-domain]  Cd Length: 184  Bit Score: 38.80  E-value: 6.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425   8 AGMEWVDIVSEDNEVIAQSSRAQM-RAERLRHRATYIVVHDGMGKILVQRRTDIKDFMPGMLDATAGGVVQAGEALLESA 86
Cdd:PRK03759   3 METELVVLLDEQGVPTGTAEKAAAhTADTPLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAV 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425  87 RREAEEELGIAGVPFA-EHGQFYF---------EDEHCRVWGGLFScvshGPFALQESEISEVCWMEPEEITARCDEftp 156
Cdd:PRK03759  83 IRRCREELGVEITDLElVLPDFRYratdpngivENEVCPVFAARVT----SALQPNPDEVMDYQWVDPADLLRAVDA--- 155
                        170       180
                 ....*....|....*....|..
gi 742382425 157 dTLKALSLWLSRNAGQESSKER 178
Cdd:PRK03759 156 -TPWAFSPWMVLQAANLEAREL 176
NUDIX pfam00293
NUDIX domain;
36-147 2.23e-03

NUDIX domain;


Pssm-ID: 395229 [Multi-domain]  Cd Length: 132  Bit Score: 36.69  E-value: 2.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425   36 LRHRATYIVVHDGMGKILVQRRTDIKdfmPGMLDATAGGVVQAGEALLESARREAEEELGI--------AGVPFAEHGQF 107
Cdd:pfam00293   1 KRRVAVGVVLLNEKGRVLLVRRSKKP---FPGWWSLPGGKVEPGETPEEAARRELEEETGLepellellGSLHYLAPFDG 77
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 742382425  108 YFEDEHcrVWGGLFSCVSHGPFALQ-ESEISEVCWMEPEEI 147
Cdd:pfam00293  78 RFPDEH--EILYVFLAEVEGELEPDpDGEVEEVRWVPLEEL 116
NUDIX_Hydrolase cd02883
NUDIX hydrolase superfamily; NUDIX hydrolase is a superfamily of enzymes found in all three ...
39-142 5.17e-03

NUDIX hydrolase superfamily; NUDIX hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of NUDIX hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.


Pssm-ID: 467528 [Multi-domain]  Cd Length: 106  Bit Score: 35.07  E-value: 5.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742382425  39 RATYIVVHDGMGKILVQRRTDikDFMPGMLDaTAGGVVQAGEALLESARREAEEELGIAGVPFAEHGQFYFE--DEHCRV 116
Cdd:cd02883    1 VAVGAVVFDDEGRVLLVRRSD--GPGPGGWE-LPGGGVEPGETPEEAAVREVREETGLDVEVLRLLGVYEFPdpDEGRHV 77
                         90       100
                 ....*....|....*....|....*...
gi 742382425 117 WGGLFSCVSHGPFA--LQESEISEVCWM 142
Cdd:cd02883   78 VVLVFLARVVGGEPppLDDEEISEVRWV 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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