|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
1-300 |
0e+00 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 527.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 1 MSQITESAVKGAPKPMTPFQEFWHYFKRNKGAVVGLVYIVLMLVIALGAGVLAPHAPADQFRDALLKPPVWQEGGSWQYL 80
Cdd:PRK10913 1 MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEQFRDALLAPPVWQEGGSWAHI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 81 LGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVVLGLLAGYFGGAVDAVIMRVVDIMLALPSLLLALVLVAVFGPS 160
Cdd:PRK10913 81 LGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 161 IVNASLALTFVALPHYVRLTRAAVLAEVNRDYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFL 240
Cdd:PRK10913 161 IVNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 241 GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
Cdd:PRK10913 241 GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
15-295 |
8.52e-107 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 311.66 E-value: 8.52e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 15 PMTPFQEFWHYFKRNKGAVVGLVYIVLMLVIALGAGVLAPHAPADQFRDALLKPPvwqeggSWQYLLGTDDVGRDVLSRL 94
Cdd:COG1173 1 PRSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPP------SAAHWLGTDQLGRDVLSRL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 95 MYGARLSLLVGCLVVVLSLIMGVVLGLLAGYFGGAVDAVIMRVVDIMLALPSLLLALVLVAVFGPSIVNASLALTFVALP 174
Cdd:COG1173 75 LYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 175 HYVRLTRAAVLAEVNRDYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTM 254
Cdd:COG1173 155 GYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTM 234
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 742394896 255 LSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALD 295
Cdd:COG1173 235 LSEGRNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
32-295 |
1.68e-70 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 218.79 E-value: 1.68e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 32 AVVGLVYIVLMLVIALGAGVLAPHAPADQFRDALLKPPvwqeggSWQYLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVL 111
Cdd:TIGR02790 1 VVSALLIIAVLFLLAIFAPWIAPHDPLAQNLPMRLLGP------SMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 112 SLIMGVVLGLLAGYFGGAVDAVIMRVVDIMLALPSLLLALVLVAVFGPSIVNASLALTFVALPHYVRLTRAAVLAEVNRD 191
Cdd:TIGR02790 75 VLTIGLLIGGLAGYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQRE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 192 YVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTF 271
Cdd:TIGR02790 155 FVLAARTSGASHWQIIRRHILPNILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIY 234
|
250 260
....*....|....*....|....
gi 742394896 272 PGLAILLTVLAFNLMGDGLRDALD 295
Cdd:TIGR02790 235 PGLAILISVMAFNLLGDALRDHLG 258
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
114-280 |
5.41e-14 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 68.84 E-value: 5.41e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 114 IMGVVLGLLAGYFGGAVDAVIMRVVDIMLA--------LPSLLLALVLVAVFGPSIVNASLALTFVALPHYVRLTRAAVL 185
Cdd:cd06261 17 VLGLLLGIILARKRGKLDRLLRRIIDLLLSlpslvlglLLVLLFGVLLGWGILPGLGLPALILALLLIAPFARLIRRAAL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 186 AEVNRDYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAqPPTPEWGTMLsdVLQFAQSA 265
Cdd:cd06261 97 ESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE-APGPGTGLLL--IFAILFPG 173
|
170
....*....|....*
gi 742394896 266 WWVVTFPGLAILLTV 280
Cdd:cd06261 174 DLGVAAAVALILLLL 188
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
116-300 |
8.42e-14 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 68.48 E-value: 8.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 116 GVVLGLLAG-YFGGAVDAVIMRVVDIMLALPSLLLALVLVAVFGPSI----VNASLALTFVALPHYVRLTRAAVLAEVNR 190
Cdd:pfam00528 1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSIlghgILPAIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 191 DYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFL----GMGAQPPTPEWGTMLSdvlqfaqsaw 266
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYP---------- 150
|
170 180 190
....*....|....*....|....*....|....
gi 742394896 267 wVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
Cdd:pfam00528 151 -EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
1-300 |
0e+00 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 527.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 1 MSQITESAVKGAPKPMTPFQEFWHYFKRNKGAVVGLVYIVLMLVIALGAGVLAPHAPADQFRDALLKPPVWQEGGSWQYL 80
Cdd:PRK10913 1 MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEQFRDALLAPPVWQEGGSWAHI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 81 LGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVVLGLLAGYFGGAVDAVIMRVVDIMLALPSLLLALVLVAVFGPS 160
Cdd:PRK10913 81 LGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 161 IVNASLALTFVALPHYVRLTRAAVLAEVNRDYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFL 240
Cdd:PRK10913 161 IVNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 241 GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
Cdd:PRK10913 241 GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
15-295 |
8.52e-107 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 311.66 E-value: 8.52e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 15 PMTPFQEFWHYFKRNKGAVVGLVYIVLMLVIALGAGVLAPHAPADQFRDALLKPPvwqeggSWQYLLGTDDVGRDVLSRL 94
Cdd:COG1173 1 PRSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPP------SAAHWLGTDQLGRDVLSRL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 95 MYGARLSLLVGCLVVVLSLIMGVVLGLLAGYFGGAVDAVIMRVVDIMLALPSLLLALVLVAVFGPSIVNASLALTFVALP 174
Cdd:COG1173 75 LYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 175 HYVRLTRAAVLAEVNRDYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTM 254
Cdd:COG1173 155 GYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTM 234
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 742394896 255 LSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALD 295
Cdd:COG1173 235 LSEGRNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| SapC |
COG4171 |
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms]; |
17-299 |
3.98e-82 |
|
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
Pssm-ID: 443331 [Multi-domain] Cd Length: 296 Bit Score: 249.73 E-value: 3.98e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 17 TPFQEFWHYFKRNKGAVVGLVYIVLMLVIALGAGVLAPHAPADQFRDALLKPPVWQEGGSWQYLLGTDDVGRDVLSRLMY 96
Cdd:COG4171 14 SPLKQIWQSFRKNPLAMIGLYGFLFLILLALFGPLLAPYSPDQQFIGALLLPPSWDDNGDVSFFLGTDDLGRDILSRLLY 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 97 GARLSLLVGCLVVVLSLIMGVVLGLLAGYFGGAVDAVIMRVVDIMLALPSLLLALVLVAVFGPSIVNASLALTFVALPHY 176
Cdd:COG4171 94 GARYTFGSALLVVLAAAIIGGIIGILAGMSRGLKSSILNHLLDTLLSIPSLLLAIIIVALLGPGLENAMLAITLALLPQF 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 177 VRLTRAAVLAEVNRDYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLS 256
Cdd:COG4171 174 IHAIYQAVHQELKKEYVLAARLDGASNWQLLRYSILPNILEVLVTELTRALSIAILDISALGFLGLGAQLPSPEWGAMLG 253
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 742394896 257 DVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLK 299
Cdd:COG4171 254 DSLELIYLAPWTVILPGLAIMFSVLIVNLVGDGLRRALNKGVE 296
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
32-295 |
1.68e-70 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 218.79 E-value: 1.68e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 32 AVVGLVYIVLMLVIALGAGVLAPHAPADQFRDALLKPPvwqeggSWQYLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVL 111
Cdd:TIGR02790 1 VVSALLIIAVLFLLAIFAPWIAPHDPLAQNLPMRLLGP------SMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 112 SLIMGVVLGLLAGYFGGAVDAVIMRVVDIMLALPSLLLALVLVAVFGPSIVNASLALTFVALPHYVRLTRAAVLAEVNRD 191
Cdd:TIGR02790 75 VLTIGLLIGGLAGYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQRE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 192 YVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTF 271
Cdd:TIGR02790 155 FVLAARTSGASHWQIIRRHILPNILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIY 234
|
250 260
....*....|....*....|....
gi 742394896 272 PGLAILLTVLAFNLMGDGLRDALD 295
Cdd:TIGR02790 235 PGLAILISVMAFNLLGDALRDHLG 258
|
|
| PRK09881 |
PRK09881 |
D,D-dipeptide ABC transporter permease; |
1-298 |
8.92e-68 |
|
D,D-dipeptide ABC transporter permease;
Pssm-ID: 182131 [Multi-domain] Cd Length: 296 Bit Score: 213.14 E-value: 8.92e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 1 MSQITE-SAVKGAPKPMTPFQEFWHYFKRNKGAVVGLVYIVLMLVIALGAGVLAPHAPADQFRDALLKPPvwqeggSWQY 79
Cdd:PRK09881 1 MMLSEEtSAVRPQKQTRFNGAKLVWMLKGSPLTVTGAVIIVLMLLMMIFSPWLATHDPNAIDLTARLLPP------SAAH 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 80 LLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVVLGLLAGYFGGAVDAVIMRVVDIMLALPSLLLALVLVAVFGP 159
Cdd:PRK09881 75 WFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 160 SIVNASLALTFVALPHYVRLTRAAVLAEVNRDYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGF 239
Cdd:PRK09881 155 SLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGF 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 742394896 240 LGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKL 298
Cdd:PRK09881 235 IGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKA 293
|
|
| PRK15082 |
PRK15082 |
glutathione ABC transporter permease GsiD; Provisional |
17-300 |
6.89e-64 |
|
glutathione ABC transporter permease GsiD; Provisional
Pssm-ID: 185040 [Multi-domain] Cd Length: 301 Bit Score: 203.42 E-value: 6.89e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 17 TPFQEFWHYFKRNKGAVVGLVYIVLMLVIALGAGVLAPHAPADQFR-DALlkppvwQEGGSWQYLLGTDDVGRDVLSRLM 95
Cdd:PRK15082 23 TPWHEFWRRFRRQHVALVAGLFVLLLIVVAIFAPWIAPYDAENYFDyDAL------NAGPSLQHWFGVDSLGRDIFSRIL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 96 YGARLSLLVGCLVVVLSLIMGVVLGLLAGYFGGAVDAVIMRVVDIMLALPSLLLALVLVAVFGPSIVNASLALTFVALPH 175
Cdd:PRK15082 97 VGARISLAAGFFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILGSGMANVIIAVAIFSIPA 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 176 YVRLTRAAVLAEVNRDYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTML 255
Cdd:PRK15082 177 FARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGLGAQPPTPEWGAML 256
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 742394896 256 SDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
Cdd:PRK15082 257 NEARADMVIAPHVALFPSLAIFLTVLAFNLLGDGLRDALDPKIKG 301
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
27-299 |
1.33e-59 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 191.42 E-value: 1.33e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 27 KRNKGAVVGLVYIVLMLVIALGAGVLAPHAPADQFRDALLKPPvwqeggSWQYLLGTDDVGRDVLSRLMYGARLSLLVGC 106
Cdd:PRK10417 1 SSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSP------DAQHWLGTDHLGRDIFSRLMAGTRVSLGSVM 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 107 LVVVLSLIMGVVLGLLAGYFGGAVDAVIMRVVDIMLALPSLLLALVLVAVFGPSIVNASLAltfVALPH---YVRLTRAA 183
Cdd:PRK10417 75 ACLLLVLALGLVIGGSAGLLGGRVDQATMRVADMFMTFPTSILAFFMVGVLGTGLTNVIIA---IALSHwawYARMVRSL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 184 VLAEVNRDYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQ 263
Cdd:PRK10417 152 VISLRQREFVLAARLSGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIW 231
|
250 260 270
....*....|....*....|....*....|....*.
gi 742394896 264 SAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLK 299
Cdd:PRK10417 232 TQPLLMFWPGLALFISVMAFNLLGDALRDHLDPHLV 267
|
|
| PRK15111 |
PRK15111 |
peptide ABC transporter permease SapC; |
14-295 |
3.01e-58 |
|
peptide ABC transporter permease SapC;
Pssm-ID: 185066 [Multi-domain] Cd Length: 296 Bit Score: 188.76 E-value: 3.01e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 14 KPMTPFQEFWHYFKRNKGAVVGLVYIVLMLVIALGAGVLAPHAPADQFRDALLKPPVWQEGGSWQYLLGTDDVGRDVLSR 93
Cdd:PRK15111 11 RPPGTLRTAWRKFYSDALAMVGLYGCAGLALLCLFGGWLAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 94 LMYGARLSLLVGCLVVVLSLIMGVVLGLLAGYFGGAVDAVIMRVVDIMLALPSLLLALVLVAVFGPSIVNASLALTFVAL 173
Cdd:PRK15111 91 LLSGAAPTVGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLSHAMFAVWLALL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 174 PHYVRLTRAAVLAEVNRDYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGT 253
Cdd:PRK15111 171 PRMVRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGA 250
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 742394896 254 MLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALD 295
Cdd:PRK15111 251 MLGDSLELIYVAPWTVMLPGAAIMLSVLLVNLLGDGIRRAII 292
|
|
| YejE |
COG4239 |
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ... |
76-297 |
3.05e-38 |
|
ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443381 [Multi-domain] Cd Length: 342 Bit Score: 137.98 E-value: 3.05e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 76 SWQYLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVVLGLLAGYFGGAVDAVIMRVVDIMLALPSLLLALVLVA 155
Cdd:COG4239 118 SAENWLGTDDQGRDVLARLIYGFRISVLFGLALTVISSVIGVAAGAVQGYFGGRVDLLFQRFIEIWSSMPELYLLIILSS 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 156 VFGPS---IVNASLALTFVALPHYVrltRAAVLAEVNRDYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAIL 232
Cdd:COG4239 198 IFQPSfwlLLGILLLFGWMGLVGVV---RAEFLRARNLEYVRAARALGVSDRRIMFRHILPNAMVATLTFLPFILSGAIT 274
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 233 DMAALGFLGMGAQPPTPEWGTMLS---DVLQfaqsAWWVV--TFPGLAILLTVLAFnlMGDGLRDALDPK 297
Cdd:COG4239 275 TLTSLDFLGFGLPPGSPSLGELLAqgkNNLQ----APWLGlsAFVVLALMLSLLVF--IGEAVRDAFDPR 338
|
|
| PRK15406 |
PRK15406 |
oligopeptide ABC transporter permease OppC; Provisional |
26-297 |
4.17e-37 |
|
oligopeptide ABC transporter permease OppC; Provisional
Pssm-ID: 185304 [Multi-domain] Cd Length: 302 Bit Score: 133.81 E-value: 4.17e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 26 FKRNKGAVVGLVYIVLMLVIALGAGVLAPHAPADQFRDALLKPPVWQEGgswqYLLGTDDVGRDVLSRLMYGARLSLLVG 105
Cdd:PRK15406 33 FMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWGMMSSAPDMESG----HYFGTDSSGRDLLVRVAIGGRISLMVG 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 106 CLVVVLSLIMGVVLGLLAGYFGGAVDAVIMRVVDIMLALPSLLLALVLVAVFGPSIVNASLALTFVALPHYVRLTRAAVL 185
Cdd:PRK15406 109 VAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 186 AEVNRDYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSA 265
Cdd:PRK15406 189 SLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVS 268
|
250 260 270
....*....|....*....|....*....|..
gi 742394896 266 WWVVTFPGLAILLTVLAFNLMGDGLRDALDPK 297
Cdd:PRK15406 269 PWLLLFPAGFLVVTLFCFNFIGDGLRDALDPK 300
|
|
| PRK15021 |
PRK15021 |
microcin C ABC transporter permease; Provisional |
76-296 |
6.81e-21 |
|
microcin C ABC transporter permease; Provisional
Pssm-ID: 184982 [Multi-domain] Cd Length: 341 Bit Score: 91.20 E-value: 6.81e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 76 SWQYLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVVLGLLAGYFGGAVDAVIMRVVDIMLALPSLLLALVLVA 155
Cdd:PRK15021 118 SRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILLSS 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 156 VFGPS---IVNASLALTFVALphyVRLTRAAVLAEVNRDYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAIL 232
Cdd:PRK15021 198 VVQPNfwwLLAITVLFGWMSL---VGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSIT 274
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 742394896 233 DMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVT-FPGLAILLTVLAFnlMGDGLRDALDP 296
Cdd:PRK15021 275 TLTSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLGITaFLSVAILLSLLIF--IGEAVRDAFDP 337
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
114-280 |
5.41e-14 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 68.84 E-value: 5.41e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 114 IMGVVLGLLAGYFGGAVDAVIMRVVDIMLA--------LPSLLLALVLVAVFGPSIVNASLALTFVALPHYVRLTRAAVL 185
Cdd:cd06261 17 VLGLLLGIILARKRGKLDRLLRRIIDLLLSlpslvlglLLVLLFGVLLGWGILPGLGLPALILALLLIAPFARLIRRAAL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 186 AEVNRDYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAqPPTPEWGTMLsdVLQFAQSA 265
Cdd:cd06261 97 ESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE-APGPGTGLLL--IFAILFPG 173
|
170
....*....|....*
gi 742394896 266 WWVVTFPGLAILLTV 280
Cdd:cd06261 174 DLGVAAAVALILLLL 188
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
116-300 |
8.42e-14 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 68.48 E-value: 8.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 116 GVVLGLLAG-YFGGAVDAVIMRVVDIMLALPSLLLALVLVAVFGPSI----VNASLALTFVALPHYVRLTRAAVLAEVNR 190
Cdd:pfam00528 1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSIlghgILPAIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 191 DYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFL----GMGAQPPTPEWGTMLSdvlqfaqsaw 266
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYP---------- 150
|
170 180 190
....*....|....*....|....*....|....
gi 742394896 267 wVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
Cdd:pfam00528 151 -EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| OppC_N |
pfam12911 |
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ... |
17-69 |
3.27e-13 |
|
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.
Pssm-ID: 463747 [Multi-domain] Cd Length: 53 Bit Score: 62.82 E-value: 3.27e-13
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 742394896 17 TPFQEFWHYFKRNKGAVVGLVYIVLMLVIALGAGVLAPHAPADQFRDALLKPP 69
Cdd:pfam12911 1 SPWQDAWRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYDPDQQDLSADLLPP 53
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
165-231 |
6.03e-06 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 46.98 E-value: 6.03e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 742394896 165 SLALTFVALPHYVRLTRAAVLAEVNRDYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAI 231
Cdd:COG0601 185 ALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLGGLL 251
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
166-231 |
1.33e-04 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 42.81 E-value: 1.33e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 742394896 166 LALTFVALPHYVRLTRaAVLAEVNRDYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAI 231
Cdd:COG0555 141 LAQTFVSLPFVVRTVQ-PVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARAL 205
|
|
| Mo_ABC_porter |
TIGR01581 |
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ... |
166-278 |
1.60e-03 |
|
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Pssm-ID: 130643 Cd Length: 225 Bit Score: 38.92 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742394896 166 LALTFVALPHYVRLTRAAVLAeVNRDYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQ 245
Cdd:TIGR01581 108 LAQTFVASPYYVRVARSTFKS-VDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARALGEFGATLMFAGSIQ 186
|
90 100 110
....*....|....*....|....*....|....*....
gi 742394896 246 P-----PTPEWGTMLSDVLQFA-QSAWWVVTFPGLAILL 278
Cdd:TIGR01581 187 GktrtlPLAIYLNIQSDNIEAAvASALLLLVIAFLLLLV 225
|
|
| cysT |
CHL00187 |
sulfate transport protein; Provisional |
166-231 |
7.54e-03 |
|
sulfate transport protein; Provisional
Pssm-ID: 214388 [Multi-domain] Cd Length: 237 Bit Score: 37.30 E-value: 7.54e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 742394896 166 LALTFVALPHYVRlTRAAVLAEVNRDYVTASRVAGAGALRQMFVNILPNCLAPLIVQASLGFSNAI 231
Cdd:CHL00187 142 LAMIFVSFPFVVR-TIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAI 206
|
|
| |
