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Conserved domains on  [gi|742396412|ref|WP_038875537|]
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MULTISPECIES: Nramp family divalent metal transporter [Serratia]

Protein Classification

divalent metal cation transporter( domain architecture ID 10011492)

divalent metal cation transporter belonging to the NRAMP family, similar to the Escherichia coli MntH, which transports ions such as Mn2+ or Fe2+ across the cellular membrane

Gene Ontology:  GO:0046872|GO:0030001

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK00701 PRK00701
divalent metal cation transporter MntH;
1-409 3.06e-177

divalent metal cation transporter MntH;


:

Pssm-ID: 234815  Cd Length: 439  Bit Score: 502.06  E-value: 3.06e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412   1 MRDAATTPSLTErtnIAIGAALAGRKRGAFTPLLFAGPAVIASIAYMDPGNFATNIQAGAKYGYSLLWVVVMANLIAMLF 80
Cdd:PRK00701   5 PRTATAPFSLSE---VNGSVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  81 QALSAKLGIVTNRNLAEMCRDQFSRPVVIGMWLLSEVAAMATDLAEFLGGAIALALLFHMPLLAGMGVTAVITYALLMVE 160
Cdd:PRK00701  82 QSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQ 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 161 KKGFRPVELMIGGLVGIIALCYLVEMFIVPVDWQAAGIGMV--TPQLPDAQALTIAVGIIGATVMPHAIFLHSGLTQHRS 238
Cdd:PRK00701 162 RRGFRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLKGFIpsSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRV 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 239 PASDNGERRKLLRFSNIEVVIALALAGLVNIAMVIMASSAFHA-GNSDVAEIGTAYHTLTPLFGAAAAGIFLASLIASGI 317
Cdd:PRK00701 242 VGRTGEEKREALRFTRIDSAIALTIAGFVNAAMLILAAAAFHAsGHTDVADIEDAYLLLSPLLGAAAATLFGIALLASGL 321
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 318 SSSVVGTMAGQMIMQGFVGFRIPVWVRRLVT----MVPAFIVVAMG--VNATDALVYSQVVLSLALPAPMIALVMFTRRR 391
Cdd:PRK00701 322 SSTVVGTLAGQIVMEGFLRLRIPLWVRRLITrglaMVPALIVILLGgeLDPTRLLVLSQVVLSFGLPFALIPLLLFTSDR 401
                        410
                 ....*....|....*...
gi 742396412 392 DIMGEFANGRWTSLAAIV 409
Cdd:PRK00701 402 KLMGELVNPRWVKIIAWI 419
 
Name Accession Description Interval E-value
PRK00701 PRK00701
divalent metal cation transporter MntH;
1-409 3.06e-177

divalent metal cation transporter MntH;


Pssm-ID: 234815  Cd Length: 439  Bit Score: 502.06  E-value: 3.06e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412   1 MRDAATTPSLTErtnIAIGAALAGRKRGAFTPLLFAGPAVIASIAYMDPGNFATNIQAGAKYGYSLLWVVVMANLIAMLF 80
Cdd:PRK00701   5 PRTATAPFSLSE---VNGSVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  81 QALSAKLGIVTNRNLAEMCRDQFSRPVVIGMWLLSEVAAMATDLAEFLGGAIALALLFHMPLLAGMGVTAVITYALLMVE 160
Cdd:PRK00701  82 QSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQ 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 161 KKGFRPVELMIGGLVGIIALCYLVEMFIVPVDWQAAGIGMV--TPQLPDAQALTIAVGIIGATVMPHAIFLHSGLTQHRS 238
Cdd:PRK00701 162 RRGFRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLKGFIpsSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRV 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 239 PASDNGERRKLLRFSNIEVVIALALAGLVNIAMVIMASSAFHA-GNSDVAEIGTAYHTLTPLFGAAAAGIFLASLIASGI 317
Cdd:PRK00701 242 VGRTGEEKREALRFTRIDSAIALTIAGFVNAAMLILAAAAFHAsGHTDVADIEDAYLLLSPLLGAAAATLFGIALLASGL 321
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 318 SSSVVGTMAGQMIMQGFVGFRIPVWVRRLVT----MVPAFIVVAMG--VNATDALVYSQVVLSLALPAPMIALVMFTRRR 391
Cdd:PRK00701 322 SSTVVGTLAGQIVMEGFLRLRIPLWVRRLITrglaMVPALIVILLGgeLDPTRLLVLSQVVLSFGLPFALIPLLLFTSDR 401
                        410
                 ....*....|....*...
gi 742396412 392 DIMGEFANGRWTSLAAIV 409
Cdd:PRK00701 402 KLMGELVNPRWVKIIAWI 419
Nramp pfam01566
Natural resistance-associated macrophage protein; The natural resistance-associated macrophage ...
52-401 1.84e-126

Natural resistance-associated macrophage protein; The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals. The yeast proteins Smf1 and Smf2 may also transport divalent cations.


Pssm-ID: 426327 [Multi-domain]  Cd Length: 356  Bit Score: 369.97  E-value: 1.84e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412   52 FATNIQAGAKYGYSLLWVVVMANLIAMLFQALSAKLGIVTNRNLAEMCRDQFSRPVVIGMWLLSEVAAMATDLAEFLGGA 131
Cdd:pfam01566   1 WATDIQAGARFGYSLLWVLLLSNLMAILLQELSARLGLVTGKGLAELIRERFPRKVSWLLWILAELAIIATDLAEVIGGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  132 IALALLFHMPLLAGMGVTAVITyALLMVEKKGFRPVELMIGGLVGIIALCYLVEMFIVPVDWQAAGIGMVTPQLPDAQAL 211
Cdd:pfam01566  81 IALNLLFGIPLWIGVLITAVLV-LLLLFQKGGYRKLEKVIIGLVLVIALSFIAELFLVKPDWGAVAAGLVVPSFPGSGSL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  212 TIAVGIIGATVMPHAIFLHSGLTQHRSPASDNGERRKLLRFSNIEVVIALALAGLVNIAMVIMASSAFHA-GNSDVAEIG 290
Cdd:pfam01566 160 LLAVGILGATVMPHNLFLHSSLVQERGWTIDRDEEDEALRYSRIDTIIALIVAGLVNAAILIVAAAAFHGsGGIDVATLA 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  291 TAYHTLTPLFGAAAAGIFLASLIASGISSSVVGTMAGQMIMQGFVGFRIPVWVRRLVT----MVPAFIVVAMGVNATD-- 364
Cdd:pfam01566 240 DAAAALEPLLGKAAAVLFALGLLAAGLSSTITGTLAGQYVMEGFLGWRIPLWLRRLITraiaFYPALAVILLGGAPGVvq 319
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 742396412  365 ALVYSQVVLSLALPAPMIALVMFTRRRDIMGEFANGR 401
Cdd:pfam01566 320 LLVLSQVVLSLQLPFALIPLLLLTSDRKLMGEFVNSR 356
MntH COG1914
Mn2+ or Fe2+ transporter, NRAMP family [Inorganic ion transport and metabolism];
23-411 3.37e-117

Mn2+ or Fe2+ transporter, NRAMP family [Inorganic ion transport and metabolism];


Pssm-ID: 441518 [Multi-domain]  Cd Length: 405  Bit Score: 348.28  E-value: 3.37e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  23 AGRKRGAFTPLLFAGPAVIASIAYMDPGNFATNIQAGAKYGYSLLWVVVMANLIAMLFQALSAKLGIVTNRNLAEMCRDQ 102
Cdd:COG1914    1 PRKRSRLRRLLALLGPGLLVAAAYIDPGNLATYTQAGAQFGYSLLWVILLSNLLAIVLQEMSARLGIVTGKGLAELIRER 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 103 FSRPVVIGMWLLSEVAAMATDLAEFLGGAIALALLFHMPLLAGMGVTAVITYALLMveKKGFRPVELMIGGLVGIIALCY 182
Cdd:COG1914   81 LGRWLGWLLLILLELANLATDAAEIAGAALALNLLFGIPLLLGAVITALLAILLLL--RGGYRRLERVLKVLVALMLLAF 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 183 LVEMFIVPVDWQAAGIGMVTPQLPDAQALTIAVGIIGATVMPHAIFLHSGLTQHRspasdNGERRKLLRFSNIEVVIALA 262
Cdd:COG1914  159 VVTAFLAHPDWGEVAKGTLVPSLPGSGSLLLAIAILGATVMPYNLFLHSSLVQEK-----GWTGKEDLRYARLDTVVGML 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 263 LAGLVNIAMVIMASSAFHAGNSDVAEIGTAYHTLTPLFGAAAAGIFLASLIASGISSSVVGTMAGQMIMQGFVGFRIPVW 342
Cdd:COG1914  234 LAGLVNLAILLLAAAVLHGTGIGVDSAAQAAQALEPLLGEWAAILFALGLLAAGFSSTITATLAGAYVMAGFLGWRIGLW 313
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 742396412 343 VR------RLVTMVPAFIVVAMGVNATDALVYSQVVLSLALPAPMIALVMFTRRRDIMGEFANGRWTSLAAIVGT 411
Cdd:COG1914  314 LRrfylvtRLLTLIGALIVLLLGGDPVKLLVLSQVLNGLLLPFALIPLLLLTNDKDLMGEYRNGRWLNVLGWLIV 388
nramp TIGR01197
NRAMP (natural resistance-associated macrophage protein) metal ion transporters; This model ...
35-394 1.49e-99

NRAMP (natural resistance-associated macrophage protein) metal ion transporters; This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene regulation and metal ion homeostasis. Nramp1 could confer resistance to infection in one of the two ways. (1) The uptake of Fe+2 can produce toxic hydroxyl radicals via Fenton reaction killing the pathogens in phagosomes or (2) Deplete the metal ion pools in the phagosome and deprive the pathogens of metal ions, which is critical for its survival. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 162246  Cd Length: 390  Bit Score: 302.41  E-value: 1.49e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412   35 FAGPAVIASIAYMDPGNFATNIQAGAKYGYSLLWVVVMANLIAMLFQALSAKLGIVTNRNLAEMCRDQFSRPVVIGMWLL 114
Cdd:TIGR01197   6 FIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRITLWIL 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  115 SEVAAMATDLAEFLGGAIALALLFHMPLLAGMGVTAVITYALLMVEKKGFRPVELMIGGLVGIIALCYLVEMFIVPVDWQ 194
Cdd:TIGR01197  86 AELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELFYAKPGQV 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  195 AAGIGMVTPQLP--DAQALTIAVGIIGATVMPHAIFLHSGLTQHRSPASDNGER--------------RKLLRFSNIEVV 258
Cdd:TIGR01197 166 KVLFGGFVPSCAvfGTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEGvseanmyrpieaaiALSVSFSINEFV 245
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  259 IALALAGLVNIAMVIMASSA---FHAGNSDVAEIGTAYHTLTPLFGAAAAGIFLASLIASGISSSVVGTMAGQMIMQGFV 335
Cdd:TIGR01197 246 IALFTAALFVNTNILVVAGAtlfNSNNNADAADLFSIGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGFL 325
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 742396412  336 GFRIPVWVRRLVT----MVPAFIVVAMG--VNATDALVYSQVVLSLALPAPMIALVMFTRRRDIM 394
Cdd:TIGR01197 326 NWRWSPWLRRLITraiaIIPCLLVAAFGgrEGLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390
Nramp_1 NF037982
Nramp family divalent metal transporter; Nramp (natural resistance-associated macrophage ...
37-393 7.29e-72

Nramp family divalent metal transporter; Nramp (natural resistance-associated macrophage protein) family divalent metal transporters are widely conserved divalent metal transporters, which enables manganese import in bacteria and dietary iron uptake in mammals.


Pssm-ID: 468301  Cd Length: 404  Bit Score: 231.87  E-value: 7.29e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  37 GPAVIASIAYMDPGNFATNIQAGAKYGYSLLWVVVMANLIAMLFQALSAKLGIVTNRNLAEMCRDQFsRPVVIGMWLLSE 116
Cdd:NF037982   1 GPGVIAAAAGVGSGEFILWPYIGSQFGYTLLWAALVGVLMQMFLNMEIERYTLATGETLFTGFRRLW-KPWGWFFWVQAE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 117 VAAMATDLAEFLGGAIALALLFHMPLLAGMGVTAVITYALLMVEKKGFRPVELMIGGLVG--IIALCYLVEMFIVPVDWQ 194
Cdd:NF037982  80 LVNIWPGWATFSAAALTYLLGFGIPILWIAIATLVLIGLILTLAPVVYRALEKVIGVKVGllVVFVAVAVVAVIAAPDWG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 195 AAGIGMVTPQLPDAQALTIAV------GIIGATVMPHAIFLHS----------GLTQH--------------RSPASDNG 244
Cdd:NF037982 160 ALGAGVLFPQLPDGDLFAVLLgaiafaGAGGAQNMVQSNWLRDkgfgmgshvpRLTSRvtgeteaepstgymFPTDEENL 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 245 ER-RKLLRFSNIEVVIALALAGLVNIAMVIM-ASSAFHAGNS---DVAEIGTAYHTLTPLFGAAAAGIFLASLIASGISS 319
Cdd:NF037982 240 ARwRGWWRVANFDQLIAFWLIGFINISMLSVlAAATFFGSGSlanDVAFLDVEGQTLAALVGPWFGTLFWLGGAASGLSS 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 320 SV-----VGTMAGQMIMQGFVGF-------RIPVWVRRLVTMVPAFIVVAMGVNATDALVYSQVVLSLALPApMIALVMF 387
Cdd:NF037982 320 ALgivdyVSRLAADVVKQGFLGGasrwsesRIYLYLVWGLTMFGIVILLAGGDQPLVLLVISAVLLGFGMFA-YSILLLL 398

                 ....*.
gi 742396412 388 TRRRDI 393
Cdd:NF037982 399 LNRRRL 404
 
Name Accession Description Interval E-value
PRK00701 PRK00701
divalent metal cation transporter MntH;
1-409 3.06e-177

divalent metal cation transporter MntH;


Pssm-ID: 234815  Cd Length: 439  Bit Score: 502.06  E-value: 3.06e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412   1 MRDAATTPSLTErtnIAIGAALAGRKRGAFTPLLFAGPAVIASIAYMDPGNFATNIQAGAKYGYSLLWVVVMANLIAMLF 80
Cdd:PRK00701   5 PRTATAPFSLSE---VNGSVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  81 QALSAKLGIVTNRNLAEMCRDQFSRPVVIGMWLLSEVAAMATDLAEFLGGAIALALLFHMPLLAGMGVTAVITYALLMVE 160
Cdd:PRK00701  82 QSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQ 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 161 KKGFRPVELMIGGLVGIIALCYLVEMFIVPVDWQAAGIGMV--TPQLPDAQALTIAVGIIGATVMPHAIFLHSGLTQHRS 238
Cdd:PRK00701 162 RRGFRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLKGFIpsSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRV 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 239 PASDNGERRKLLRFSNIEVVIALALAGLVNIAMVIMASSAFHA-GNSDVAEIGTAYHTLTPLFGAAAAGIFLASLIASGI 317
Cdd:PRK00701 242 VGRTGEEKREALRFTRIDSAIALTIAGFVNAAMLILAAAAFHAsGHTDVADIEDAYLLLSPLLGAAAATLFGIALLASGL 321
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 318 SSSVVGTMAGQMIMQGFVGFRIPVWVRRLVT----MVPAFIVVAMG--VNATDALVYSQVVLSLALPAPMIALVMFTRRR 391
Cdd:PRK00701 322 SSTVVGTLAGQIVMEGFLRLRIPLWVRRLITrglaMVPALIVILLGgeLDPTRLLVLSQVVLSFGLPFALIPLLLFTSDR 401
                        410
                 ....*....|....*...
gi 742396412 392 DIMGEFANGRWTSLAAIV 409
Cdd:PRK00701 402 KLMGELVNPRWVKIIAWI 419
Nramp pfam01566
Natural resistance-associated macrophage protein; The natural resistance-associated macrophage ...
52-401 1.84e-126

Natural resistance-associated macrophage protein; The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals. The yeast proteins Smf1 and Smf2 may also transport divalent cations.


Pssm-ID: 426327 [Multi-domain]  Cd Length: 356  Bit Score: 369.97  E-value: 1.84e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412   52 FATNIQAGAKYGYSLLWVVVMANLIAMLFQALSAKLGIVTNRNLAEMCRDQFSRPVVIGMWLLSEVAAMATDLAEFLGGA 131
Cdd:pfam01566   1 WATDIQAGARFGYSLLWVLLLSNLMAILLQELSARLGLVTGKGLAELIRERFPRKVSWLLWILAELAIIATDLAEVIGGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  132 IALALLFHMPLLAGMGVTAVITyALLMVEKKGFRPVELMIGGLVGIIALCYLVEMFIVPVDWQAAGIGMVTPQLPDAQAL 211
Cdd:pfam01566  81 IALNLLFGIPLWIGVLITAVLV-LLLLFQKGGYRKLEKVIIGLVLVIALSFIAELFLVKPDWGAVAAGLVVPSFPGSGSL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  212 TIAVGIIGATVMPHAIFLHSGLTQHRSPASDNGERRKLLRFSNIEVVIALALAGLVNIAMVIMASSAFHA-GNSDVAEIG 290
Cdd:pfam01566 160 LLAVGILGATVMPHNLFLHSSLVQERGWTIDRDEEDEALRYSRIDTIIALIVAGLVNAAILIVAAAAFHGsGGIDVATLA 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  291 TAYHTLTPLFGAAAAGIFLASLIASGISSSVVGTMAGQMIMQGFVGFRIPVWVRRLVT----MVPAFIVVAMGVNATD-- 364
Cdd:pfam01566 240 DAAAALEPLLGKAAAVLFALGLLAAGLSSTITGTLAGQYVMEGFLGWRIPLWLRRLITraiaFYPALAVILLGGAPGVvq 319
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 742396412  365 ALVYSQVVLSLALPAPMIALVMFTRRRDIMGEFANGR 401
Cdd:pfam01566 320 LLVLSQVVLSLQLPFALIPLLLLTSDRKLMGEFVNSR 356
MntH COG1914
Mn2+ or Fe2+ transporter, NRAMP family [Inorganic ion transport and metabolism];
23-411 3.37e-117

Mn2+ or Fe2+ transporter, NRAMP family [Inorganic ion transport and metabolism];


Pssm-ID: 441518 [Multi-domain]  Cd Length: 405  Bit Score: 348.28  E-value: 3.37e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  23 AGRKRGAFTPLLFAGPAVIASIAYMDPGNFATNIQAGAKYGYSLLWVVVMANLIAMLFQALSAKLGIVTNRNLAEMCRDQ 102
Cdd:COG1914    1 PRKRSRLRRLLALLGPGLLVAAAYIDPGNLATYTQAGAQFGYSLLWVILLSNLLAIVLQEMSARLGIVTGKGLAELIRER 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 103 FSRPVVIGMWLLSEVAAMATDLAEFLGGAIALALLFHMPLLAGMGVTAVITYALLMveKKGFRPVELMIGGLVGIIALCY 182
Cdd:COG1914   81 LGRWLGWLLLILLELANLATDAAEIAGAALALNLLFGIPLLLGAVITALLAILLLL--RGGYRRLERVLKVLVALMLLAF 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 183 LVEMFIVPVDWQAAGIGMVTPQLPDAQALTIAVGIIGATVMPHAIFLHSGLTQHRspasdNGERRKLLRFSNIEVVIALA 262
Cdd:COG1914  159 VVTAFLAHPDWGEVAKGTLVPSLPGSGSLLLAIAILGATVMPYNLFLHSSLVQEK-----GWTGKEDLRYARLDTVVGML 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 263 LAGLVNIAMVIMASSAFHAGNSDVAEIGTAYHTLTPLFGAAAAGIFLASLIASGISSSVVGTMAGQMIMQGFVGFRIPVW 342
Cdd:COG1914  234 LAGLVNLAILLLAAAVLHGTGIGVDSAAQAAQALEPLLGEWAAILFALGLLAAGFSSTITATLAGAYVMAGFLGWRIGLW 313
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 742396412 343 VR------RLVTMVPAFIVVAMGVNATDALVYSQVVLSLALPAPMIALVMFTRRRDIMGEFANGRWTSLAAIVGT 411
Cdd:COG1914  314 LRrfylvtRLLTLIGALIVLLLGGDPVKLLVLSQVLNGLLLPFALIPLLLLTNDKDLMGEYRNGRWLNVLGWLIV 388
nramp TIGR01197
NRAMP (natural resistance-associated macrophage protein) metal ion transporters; This model ...
35-394 1.49e-99

NRAMP (natural resistance-associated macrophage protein) metal ion transporters; This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene regulation and metal ion homeostasis. Nramp1 could confer resistance to infection in one of the two ways. (1) The uptake of Fe+2 can produce toxic hydroxyl radicals via Fenton reaction killing the pathogens in phagosomes or (2) Deplete the metal ion pools in the phagosome and deprive the pathogens of metal ions, which is critical for its survival. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 162246  Cd Length: 390  Bit Score: 302.41  E-value: 1.49e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412   35 FAGPAVIASIAYMDPGNFATNIQAGAKYGYSLLWVVVMANLIAMLFQALSAKLGIVTNRNLAEMCRDQFSRPVVIGMWLL 114
Cdd:TIGR01197   6 FIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRITLWIL 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  115 SEVAAMATDLAEFLGGAIALALLFHMPLLAGMGVTAVITYALLMVEKKGFRPVELMIGGLVGIIALCYLVEMFIVPVDWQ 194
Cdd:TIGR01197  86 AELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELFYAKPGQV 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  195 AAGIGMVTPQLP--DAQALTIAVGIIGATVMPHAIFLHSGLTQHRSPASDNGER--------------RKLLRFSNIEVV 258
Cdd:TIGR01197 166 KVLFGGFVPSCAvfGTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEGvseanmyrpieaaiALSVSFSINEFV 245
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  259 IALALAGLVNIAMVIMASSA---FHAGNSDVAEIGTAYHTLTPLFGAAAAGIFLASLIASGISSSVVGTMAGQMIMQGFV 335
Cdd:TIGR01197 246 IALFTAALFVNTNILVVAGAtlfNSNNNADAADLFSIGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGFL 325
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 742396412  336 GFRIPVWVRRLVT----MVPAFIVVAMG--VNATDALVYSQVVLSLALPAPMIALVMFTRRRDIM 394
Cdd:TIGR01197 326 NWRWSPWLRRLITraiaIIPCLLVAAFGgrEGLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390
Nramp_1 NF037982
Nramp family divalent metal transporter; Nramp (natural resistance-associated macrophage ...
37-393 7.29e-72

Nramp family divalent metal transporter; Nramp (natural resistance-associated macrophage protein) family divalent metal transporters are widely conserved divalent metal transporters, which enables manganese import in bacteria and dietary iron uptake in mammals.


Pssm-ID: 468301  Cd Length: 404  Bit Score: 231.87  E-value: 7.29e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412  37 GPAVIASIAYMDPGNFATNIQAGAKYGYSLLWVVVMANLIAMLFQALSAKLGIVTNRNLAEMCRDQFsRPVVIGMWLLSE 116
Cdd:NF037982   1 GPGVIAAAAGVGSGEFILWPYIGSQFGYTLLWAALVGVLMQMFLNMEIERYTLATGETLFTGFRRLW-KPWGWFFWVQAE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 117 VAAMATDLAEFLGGAIALALLFHMPLLAGMGVTAVITYALLMVEKKGFRPVELMIGGLVG--IIALCYLVEMFIVPVDWQ 194
Cdd:NF037982  80 LVNIWPGWATFSAAALTYLLGFGIPILWIAIATLVLIGLILTLAPVVYRALEKVIGVKVGllVVFVAVAVVAVIAAPDWG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 195 AAGIGMVTPQLPDAQALTIAV------GIIGATVMPHAIFLHS----------GLTQH--------------RSPASDNG 244
Cdd:NF037982 160 ALGAGVLFPQLPDGDLFAVLLgaiafaGAGGAQNMVQSNWLRDkgfgmgshvpRLTSRvtgeteaepstgymFPTDEENL 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 245 ER-RKLLRFSNIEVVIALALAGLVNIAMVIM-ASSAFHAGNS---DVAEIGTAYHTLTPLFGAAAAGIFLASLIASGISS 319
Cdd:NF037982 240 ARwRGWWRVANFDQLIAFWLIGFINISMLSVlAAATFFGSGSlanDVAFLDVEGQTLAALVGPWFGTLFWLGGAASGLSS 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742396412 320 SV-----VGTMAGQMIMQGFVGF-------RIPVWVRRLVTMVPAFIVVAMGVNATDALVYSQVVLSLALPApMIALVMF 387
Cdd:NF037982 320 ALgivdyVSRLAADVVKQGFLGGasrwsesRIYLYLVWGLTMFGIVILLAGGDQPLVLLVISAVLLGFGMFA-YSILLLL 398

                 ....*.
gi 742396412 388 TRRRDI 393
Cdd:NF037982 399 LNRRRL 404
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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