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Conserved domains on  [gi|742398379|ref|WP_038877504|]
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MULTISPECIES: DUF3861 domain-containing protein [Serratia]

Protein Classification

DUF3861 domain-containing protein( domain architecture ID 10585660)

DUF3861 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3861 pfam12977
Domain of Unknown Function with PDB structure (DUF3861); The 3cjl structure is likely a ...
 4-95 7.60e-44

Domain of Unknown Function with PDB structure (DUF3861); The 3cjl structure is likely a representative of a new fold with some resemblance to 3-helical bundle folds such as the serum albumin-like fold of SCOP. No significant hits reported by a Dali search. This protein is the first structural representative of a small (about 60 proteins) family of proteins that are found among proteo- and enterobacteria (REF http://www.topsan.org/Proteins/JCSG/3CJL).


:

Pssm-ID: 432913  Cd Length: 90  Bit Score: 136.98  E-value: 7.60e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742398379   4 HRFTITVEALSDRQGNPVEKAPLSFEVTNHDDILDIVERIRARDDLNfgPEQSAAFAVGLKLFSEVMIENRKHPVFAPLR 83
Cdd:pfam12977  1 HRYRITVEPLEDADGGPSHHAPLEFEAGNHDDIFAIVERLQAKGDLD--ADEAAAFAVGLKLFGEVMLRNRKHPLFAELQ 78

                         90
                 ....*....|..
gi 742398379  84 DAFKEFMVGLKK 95
Cdd:pfam12977 79 PAFREFMKNLKS 90
 
Name Accession Description Interval E-value
DUF3861 pfam12977
Domain of Unknown Function with PDB structure (DUF3861); The 3cjl structure is likely a ...
 4-95 7.60e-44

Domain of Unknown Function with PDB structure (DUF3861); The 3cjl structure is likely a representative of a new fold with some resemblance to 3-helical bundle folds such as the serum albumin-like fold of SCOP. No significant hits reported by a Dali search. This protein is the first structural representative of a small (about 60 proteins) family of proteins that are found among proteo- and enterobacteria (REF http://www.topsan.org/Proteins/JCSG/3CJL).


Pssm-ID: 432913  Cd Length: 90  Bit Score: 136.98  E-value: 7.60e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742398379   4 HRFTITVEALSDRQGNPVEKAPLSFEVTNHDDILDIVERIRARDDLNfgPEQSAAFAVGLKLFSEVMIENRKHPVFAPLR 83
Cdd:pfam12977  1 HRYRITVEPLEDADGGPSHHAPLEFEAGNHDDIFAIVERLQAKGDLD--ADEAAAFAVGLKLFGEVMLRNRKHPLFAELQ 78

                         90
                 ....*....|..
gi 742398379  84 DAFKEFMVGLKK 95
Cdd:pfam12977 79 PAFREFMKNLKS 90
 
Name Accession Description Interval E-value
DUF3861 pfam12977
Domain of Unknown Function with PDB structure (DUF3861); The 3cjl structure is likely a ...
 4-95 7.60e-44

Domain of Unknown Function with PDB structure (DUF3861); The 3cjl structure is likely a representative of a new fold with some resemblance to 3-helical bundle folds such as the serum albumin-like fold of SCOP. No significant hits reported by a Dali search. This protein is the first structural representative of a small (about 60 proteins) family of proteins that are found among proteo- and enterobacteria (REF http://www.topsan.org/Proteins/JCSG/3CJL).


Pssm-ID: 432913  Cd Length: 90  Bit Score: 136.98  E-value: 7.60e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742398379   4 HRFTITVEALSDRQGNPVEKAPLSFEVTNHDDILDIVERIRARDDLNfgPEQSAAFAVGLKLFSEVMIENRKHPVFAPLR 83
Cdd:pfam12977  1 HRYRITVEPLEDADGGPSHHAPLEFEAGNHDDIFAIVERLQAKGDLD--ADEAAAFAVGLKLFGEVMLRNRKHPLFAELQ 78

                         90
                 ....*....|..
gi 742398379  84 DAFKEFMVGLKK 95
Cdd:pfam12977 79 PAFREFMKNLKS 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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