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Conserved domains on  [gi|742462716|ref|WP_038919556|]
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MULTISPECIES: flagellar motor switch protein FliN [Dickeya]

Protein Classification

flagellar motor switch protein FliN( domain architecture ID 11483010)

flagellar motor switch protein FliN is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
fliN PRK07963
flagellar motor switch protein FliN; Validated
 1-138 2.00e-80

flagellar motor switch protein FliN; Validated


:

Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 233.14  E-value: 2.00e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742462716   1 MSDIKKPSEE-TDSVDDLWADAFSEQQSAEKSApgSTEGIFKNFDVQDTQGSMQDIDLILDIPVKLTVELGRTKMTIKEL 79
Cdd:PRK07963   1 MSDMNNPSDDnNGAMDDLWAEALNEQKATSSKS--AADAVFQQLGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKEL 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 742462716  80 LRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDIITPSERMRRLGR 138
Cdd:PRK07963  79 LRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
 
Name Accession Description Interval E-value
fliN PRK07963
flagellar motor switch protein FliN; Validated
 1-138 2.00e-80

flagellar motor switch protein FliN; Validated


Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 233.14  E-value: 2.00e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742462716   1 MSDIKKPSEE-TDSVDDLWADAFSEQQSAEKSApgSTEGIFKNFDVQDTQGSMQDIDLILDIPVKLTVELGRTKMTIKEL 79
Cdd:PRK07963   1 MSDMNNPSDDnNGAMDDLWAEALNEQKATSSKS--AADAVFQQLGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKEL 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 742462716  80 LRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDIITPSERMRRLGR 138
Cdd:PRK07963  79 LRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 7-128 3.17e-36

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 122.42  E-value: 3.17e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742462716   7 PSEETDSVDDLWADAFSEQQSAEKSAPGSTEGIFKNFDVQDTQGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGS 86
Cdd:COG1886   51 AAAGAALLLGLLDLLLEVGGLLLLGSDEEPAEFEPLEDAPEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGS 130

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 742462716  87 VVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDIIT 128
Cdd:COG1886  131 VIELDRLAGEPVDILVNGRLIARGEVVVVDDRFGVRITEIVS 172
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 54-130 1.08e-35

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 117.70  E-value: 1.08e-35
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 742462716   54 DIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDIITPS 130
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDSS 77
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 63-128 1.39e-23

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 86.62  E-value: 1.39e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 742462716   63 VKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDIIT 128
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
 
Name Accession Description Interval E-value
fliN PRK07963
flagellar motor switch protein FliN; Validated
 1-138 2.00e-80

flagellar motor switch protein FliN; Validated


Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 233.14  E-value: 2.00e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742462716   1 MSDIKKPSEE-TDSVDDLWADAFSEQQSAEKSApgSTEGIFKNFDVQDTQGSMQDIDLILDIPVKLTVELGRTKMTIKEL 79
Cdd:PRK07963   1 MSDMNNPSDDnNGAMDDLWAEALNEQKATSSKS--AADAVFQQLGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKEL 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 742462716  80 LRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDIITPSERMRRLGR 138
Cdd:PRK07963  79 LRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
PRK08119 PRK08119
flagellar motor switch protein; Validated
 2-137 1.39e-42

flagellar motor switch protein; Validated


Pssm-ID: 236154 [Multi-domain]  Cd Length: 382  Bit Score: 144.23  E-value: 1.39e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742462716   2 SDIKKPSEETDSVDDLWADAFSEQQSAEKSAPGST----EGIFKNFDVQD-TQGSMQDIDLILDIPVKLTVELGRTKMTI 76
Cdd:PRK08119 242 SPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPvnvqPAQFQSFDPPPlATTEPRNLDLILDVPLQVTVELGRTKKSI 321

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 742462716  77 KELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDIITPSERMRRLG 137
Cdd:PRK08119 322 KDILELGTGSIIELDKLAGEPVDILVNGKLIAKGEVVVIDENFGVRITDIVSQSERIKSLK 382
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 7-128 3.17e-36

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 122.42  E-value: 3.17e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742462716   7 PSEETDSVDDLWADAFSEQQSAEKSAPGSTEGIFKNFDVQDTQGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGS 86
Cdd:COG1886   51 AAAGAALLLGLLDLLLEVGGLLLLGSDEEPAEFEPLEDAPEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGS 130

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 742462716  87 VVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDIIT 128
Cdd:COG1886  131 VIELDRLAGEPVDILVNGRLIARGEVVVVDDRFGVRITEIVS 172
fliN PRK08983
flagellar motor switch protein FliN;
8-136 4.20e-36

flagellar motor switch protein FliN;


Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 120.63  E-value: 4.20e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742462716   8 SEETDSVDDlWADAFSEQQSAEKSAPGSTEgiFKNFDVQDTQGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSV 87
Cdd:PRK08983   1 SSDEDTADD-WAAAMAEQALEEALAAELDE--LVDDSAPITEDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSV 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 742462716  88 VALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDIITPSERMRRL 136
Cdd:PRK08983  78 VELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKL 126
fliN PRK05698
flagellar motor switch protein FliN;
5-136 5.15e-36

flagellar motor switch protein FliN;


Pssm-ID: 168189 [Multi-domain]  Cd Length: 155  Bit Score: 121.06  E-value: 5.15e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742462716   5 KKPSEETDSVDDLWADAFSEQQSAE------------KSAPGSTEGIFKNFDVQDTQGSMQ-----DIDLILDIPVKLTV 67
Cdd:PRK05698   6 DITSPEDQALADEWAAALEEAGDAGqddidallgadaGAEPSGPRAPMEEFGSSPKPNEPVslegpNLDVILDIPVSISM 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 742462716  68 ELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDIITPSERMRRL 136
Cdd:PRK05698  86 EVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKL 154
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 54-130 1.08e-35

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 117.70  E-value: 1.08e-35
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 742462716   54 DIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDIITPS 130
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDSS 77
PRK08916 PRK08916
flagellar motor switch protein FliN;
44-127 1.27e-23

flagellar motor switch protein FliN;


Pssm-ID: 236350 [Multi-domain]  Cd Length: 116  Bit Score: 88.27  E-value: 1.27e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742462716  44 DVQDTQGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRI 123
Cdd:PRK08916  28 EEEQADRTAADLEAVFDVPVQVSAVLGRSKMDVGQLLKLGPGSVLELDRKVGEAIDIYVNNRLVARGEVVLVEDRLGVTM 107


                 ....
gi 742462716 124 TDII 127
Cdd:PRK08916 108 TEII 111
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 63-128 1.39e-23

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 86.62  E-value: 1.39e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 742462716   63 VKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDIIT 128
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
FliN_N pfam16973
Flagellar motor switch protein FliN N-terminal; FliN is one of three proteins that form a ...
 1-50 7.94e-21

Flagellar motor switch protein FliN N-terminal; FliN is one of three proteins that form a switch-complex at the base of the basal body of the flagellum; the switch regulates the flagellum-motor.


Pssm-ID: 435683  Cd Length: 50  Bit Score: 79.45  E-value: 7.94e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 742462716    1 MSDIKKPS-EETDSVDDLWADAFSEQQSAEKSApGSTEGIFKNFDVQDTQG 50
Cdd:pfam16973   1 MSDPKKPSdDDNTSADDLWAEALNEQQATEKTA-ASTDGVFKSLEGQDALG 50
PRK08432 PRK08432
flagellar motor switch protein FliY; Validated
 26-136 2.81e-19

flagellar motor switch protein FliY; Validated


Pssm-ID: 236264 [Multi-domain]  Cd Length: 283  Bit Score: 80.82  E-value: 2.81e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742462716  26 QSAEKSAPGSTEGIFKNFDVQDTQGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGY 105
Cdd:PRK08432 171 KEEGEETTDSASEEIKTHKASLSNEEIKNINMILDVKLPVRVRIGQKKMLLKDVLSMDIGSVVELNQLANDPLEILVDDK 250

                         90       100       110
                 ....*....|....*....|....*....|.
gi 742462716 106 LIAQGEVVVVSDKYGVRITDIITPSERMRRL 136
Cdd:PRK08432 251 VIAKGEVVIVDGNFGIQITEIGTKKERLEQL 281
PRK08433 PRK08433
flagellar motor switch protein FliN;
47-127 2.67e-17

flagellar motor switch protein FliN;


Pssm-ID: 181423 [Multi-domain]  Cd Length: 111  Bit Score: 72.09  E-value: 2.67e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742462716  47 DTQGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDI 126
Cdd:PRK08433  18 YLEELICDYENLLDIEVDFSAELGTTQISLLEILKFEKGSVIDLEKPAGESVELYINGRIIGKGEVMVYEKNLAIRINEI 97


                 .
gi 742462716 127 I 127
Cdd:PRK08433  98 L 98
PRK06782 PRK06782
flagellar motor switch protein; Reviewed
 54-127 4.34e-17

flagellar motor switch protein; Reviewed


Pssm-ID: 235861 [Multi-domain]  Cd Length: 528  Bit Score: 76.41  E-value: 4.34e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 742462716  54 DIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDII 127
Cdd:PRK06782 455 DTSILQDVPMNVKVVFGSTKKTIQDILSLQENEVVVLDEDIDEPIRIYVNGVLVAYGELVNVDGFFGVKVTKSL 528
FliM COG1868
Flagellar motor switch protein FliM [Cell motility];
58-131 2.43e-14

Flagellar motor switch protein FliM [Cell motility];


Pssm-ID: 441473 [Multi-domain]  Cd Length: 326  Bit Score: 67.88  E-value: 2.43e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 742462716  58 ILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDIITPSE 131
Cdd:COG1868  252 LEEAEVELSAELGETEITLRELLNLKVGDVIPLDKKVDDPLTVYVGGVPKFEGKPGVSNGRLAVKITEIIEEEE 325
SpaO_YscQ TIGR02551
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type ...
 60-124 2.52e-14

type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274196 [Multi-domain]  Cd Length: 298  Bit Score: 67.82  E-value: 2.52e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 742462716   60 DIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRIT 124
Cdd:TIGR02551 232 QLPVTLEFELGRLTLTLAELAALQPGSVLELNVPVDGPVRLRANGRLLGRGELVDVGGRLGVRIL 296
PRK06033 PRK06033
flagellar motor switch protein FliN;
63-133 5.61e-10

flagellar motor switch protein FliN;


Pssm-ID: 180359 [Multi-domain]  Cd Length: 83  Bit Score: 52.46  E-value: 5.61e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 742462716  63 VKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDIITPSERM 133
Cdd:PRK06033   9 VELMVVLGRSSMPIHQVLRMGRGAVIPLDATEADEVWILANNHPIARGEVLIDRNRIAVEVTRAADMLDRM 79
PRK08158 PRK08158
YscQ/HrcQ family type III secretion apparatus protein;
39-123 2.10e-09

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181259 [Multi-domain]  Cd Length: 303  Bit Score: 54.10  E-value: 2.10e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742462716  39 IFKNFDVQDTQGSMQD------IDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEV 112
Cdd:PRK08158 202 IVETLDIQHIEEENNTtetaetLPGLNQLPVKLEFVLYRKNVTLAELEELCQQQLLSLPTNAELNVEIRANGALLGNGEL 281

                         90
                 ....*....|.
gi 742462716 113 VVVSDKYGVRI 123
Cdd:PRK08158 282 VQMDDTLGVEI 292
fliM PRK06666
flagellar motor switch protein FliM; Validated
 56-131 1.12e-08

flagellar motor switch protein FliM; Validated


Pssm-ID: 235849 [Multi-domain]  Cd Length: 337  Bit Score: 51.76  E-value: 1.12e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 742462716  56 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDIITPSE 131
Cdd:PRK06666 253 QQVQQAEVELVAELGEIKLTLSEILNLKVGDVIPLEKPADDPLIVYVDGKPKFLCQYGKSNGRKALQIEELIEREL 328
PRK05933 PRK05933
type III secretion system protein; Validated
 64-126 8.80e-08

type III secretion system protein; Validated


Pssm-ID: 180315 [Multi-domain]  Cd Length: 372  Bit Score: 49.46  E-value: 8.80e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 742462716  64 KLTVELGRTKMTIKELLRLSQGSVVALDGL-AGEPLDIMINGYLIAQGEVVVVSDKYGVRITDI 126
Cdd:PRK05933 309 KLVAEVARYSLSVGEFLKLGPGSILQFDGVhPTLGVDIILNGAKVGRGEIIALGDVLGIRVLEV 372
PRK06933 PRK06933
YscQ/HrcQ family type III secretion apparatus protein;
60-124 2.13e-07

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 235891 [Multi-domain]  Cd Length: 308  Bit Score: 48.19  E-value: 2.13e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 742462716  60 DIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRIT 124
Cdd:PRK06933 236 QLPVQVSFEVGRQTLDLHTLTSLQPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRVE 300
PRK08035 PRK08035
YscQ/HrcQ family type III secretion apparatus protein;
60-124 1.98e-06

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181204 [Multi-domain]  Cd Length: 323  Bit Score: 45.58  E-value: 1.98e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 742462716  60 DIPVKLTVELGRTKMTIKELLRLSQGSVVALDG-LAGEpLDIMINGYLIAQGEVVVVSDKYGVRIT 124
Cdd:PRK08035 250 QLPQQVVMEIGRLSLPIGQLRQLAVGDVLPVGGcFYPE-VTIRLNGRIIGQGELLACDNELMVRIT 314
PRK06789 PRK06789
flagellar motor switch protein; Validated
 60-126 2.16e-06

flagellar motor switch protein; Validated


Pssm-ID: 180694 [Multi-domain]  Cd Length: 74  Bit Score: 42.93  E-value: 2.16e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 742462716  60 DIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDI 126
Cdd:PRK06789   6 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGKMYVEIVEL 72
PRK06788 PRK06788
flagellar motor switch protein; Validated
 55-126 3.22e-05

flagellar motor switch protein; Validated


Pssm-ID: 180693 [Multi-domain]  Cd Length: 119  Bit Score: 40.63  E-value: 3.22e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 742462716  55 IDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSDKYGVRITDI 126
Cdd:PRK06788  28 IDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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