NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|743522012|ref|WP_039039307|]
View 

MULTISPECIES: efflux RND transporter periplasmic adaptor subunit [Aeromonas]

Protein Classification

efflux RND transporter periplasmic adaptor subunit( domain architecture ID 11436533)

efflux RND (resistance-nodulation-division) transporter periplasmic adaptor subunit, similar to Bacillus subtilis YknX, which is part of an unusual four-component transporter with a role in protection against sporulation-delaying-protein-induced killing

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
AcrA COG0845
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope ...
43-343 3.00e-78

Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms];


:

Pssm-ID: 440606 [Multi-domain]  Cd Length: 324  Bit Score: 242.54  E-value: 3.00e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  43 TVRQSLAEPSIKLVSKLAANRSVAISPEVTGRIATIAVSSGQQVKQGQTLIALDAGKQQAELAEQSASVR------DEAR 116
Cdd:COG0845    2 KVERGDVPETVEATGTVEARREVEVRARVSGRVEEVLVDEGDRVKKGQVLARLDPPDLQAALAQAQAQLAaaqaqlELAK 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 117 K-LRDMRKLVARGAVTTSELEGQEATVAQAQARVDAARYE-------LSLRTLAAPFDGTVSLIDLSEGALVNSGDVLLH 188
Cdd:COG0845   82 AeLERYKALLKKGAVSQQELDQAKAALDQAQAALAAAQAAleqaranLAYTTIRAPFDGVVGERNVEPGQLVSAGTPLFT 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 189 LDELAKLRLDLAVPERYLSLLRPGMAVTATSSAWPDQSFSGVLETLDSRISSDTQNIKARVILPNTGGQLRPGMLMNVDL 268
Cdd:COG0845  162 IADLDPLEVEFDVPESDLARLKVGQPVTVTLDAGPGKTFEGKVTFIDPAVDPATRTVRVRAELPNPDGLLRPGMFVRVRI 241
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 743522012 269 SLPPQKMTL-IPAQSVEYAGEQRFVYRLEADGRVKRVPVELGDTHGEAVWVLKGLNVGDRIAVEGLVNLRDGAQVR 343
Cdd:COG0845  242 VLGERENALlVPASAVVRDGGGAYVFVVDADGKVERRPVTLGRRDGDQVEVLSGLKAGDRVVVSGLQRLRDGAKVR 317
 
Name Accession Description Interval E-value
AcrA COG0845
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope ...
43-343 3.00e-78

Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms];


Pssm-ID: 440606 [Multi-domain]  Cd Length: 324  Bit Score: 242.54  E-value: 3.00e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  43 TVRQSLAEPSIKLVSKLAANRSVAISPEVTGRIATIAVSSGQQVKQGQTLIALDAGKQQAELAEQSASVR------DEAR 116
Cdd:COG0845    2 KVERGDVPETVEATGTVEARREVEVRARVSGRVEEVLVDEGDRVKKGQVLARLDPPDLQAALAQAQAQLAaaqaqlELAK 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 117 K-LRDMRKLVARGAVTTSELEGQEATVAQAQARVDAARYE-------LSLRTLAAPFDGTVSLIDLSEGALVNSGDVLLH 188
Cdd:COG0845   82 AeLERYKALLKKGAVSQQELDQAKAALDQAQAALAAAQAAleqaranLAYTTIRAPFDGVVGERNVEPGQLVSAGTPLFT 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 189 LDELAKLRLDLAVPERYLSLLRPGMAVTATSSAWPDQSFSGVLETLDSRISSDTQNIKARVILPNTGGQLRPGMLMNVDL 268
Cdd:COG0845  162 IADLDPLEVEFDVPESDLARLKVGQPVTVTLDAGPGKTFEGKVTFIDPAVDPATRTVRVRAELPNPDGLLRPGMFVRVRI 241
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 743522012 269 SLPPQKMTL-IPAQSVEYAGEQRFVYRLEADGRVKRVPVELGDTHGEAVWVLKGLNVGDRIAVEGLVNLRDGAQVR 343
Cdd:COG0845  242 VLGERENALlVPASAVVRDGGGAYVFVVDADGKVERRPVTLGRRDGDQVEVLSGLKAGDRVVVSGLQRLRDGAKVR 317
RND_mfp TIGR01730
RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion ...
41-343 9.05e-65

RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 273776 [Multi-domain]  Cd Length: 322  Bit Score: 207.94  E-value: 9.05e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012   41 AETVRQSLAEPSIKLVSKLAANRSVAISPEVTGRIATIAVSSGQQVKQGQTLIALDAGKQQ-------AELAEQSASVRD 113
Cdd:TIGR01730   3 VATVESETLANTLTFPGSLEAVDEADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQlalqaalAQLAAAEAQLEL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  114 EARKLRDMRKLVARGAVTTSELEGQEATVAQAQARV-------DAARYELSLRTLAAPFDGTVSLIDLSEGALVNSGDVL 186
Cdd:TIGR01730  83 AQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLeaakaslASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTL 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  187 LHLDELAKLRLDLAVPERYLSLLRPGMAVTATSSAWPDQSFSGVLETLDSRISSDTQNIKARVILPNTGGQLRPGMLMNV 266
Cdd:TIGR01730 163 ATIVDLDPLEADFSVPERDLPQLRRGQTLTVELDALPGEEFKGKLRFIDPRVDSGTGTVRVRATFPNPDGRLLPGMFGRV 242
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 743522012  267 DLSLP-PQKMTLIPAQSVEYAGEQRFVYRLEADGRVKRVPVELGDTHGEAVWVLKGLNVGDRIAVEGLVNLRDGAQVR 343
Cdd:TIGR01730 243 TISLKvRSSAIVVPTQAVIEDLNGKYVYVVKNDGKVSKRPVEVGLRNGGYVEIESGLKAGDQIVTAGVVKLRDGAKVK 320
HlyD_D23 pfam16576
Barrel-sandwich domain of CusB or HlyD membrane-fusion; HlyD_D23 is the combined domains 2 and ...
51-263 6.65e-27

Barrel-sandwich domain of CusB or HlyD membrane-fusion; HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.


Pssm-ID: 435440 [Multi-domain]  Cd Length: 214  Bit Score: 105.67  E-value: 6.65e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012   51 PSIKLVSKLAAN--RSVAISPEVTGRIATIAVSS-GQQVKQGQTLIALDA---GKQQAE--LAEQSASVRDEARKLRDMR 122
Cdd:pfam16576   4 RTIRAVGRVAYDerRLAHVHARVEGWIEKLYVNAtGDPVKKGQPLAELYSpelVAAQQEylLALRSGDALSKSELLRAAR 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  123 -KLVARGaVTTSELEGQEATvAQAQARVdaaryelslrTLAAPFDGTVSLIDLSEGALVNSGDVLLHLDELAKLRLDLAV 201
Cdd:pfam16576  84 qRLRLLG-MPEAQIAELERT-GKVQPTV----------TVYAPISGVVTELNVREGMYVQPGDTLFTIADLSTVWVEADV 151
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 743522012  202 PERYLSLLRPGMAVTATSSAWPDQSFSGVLETLDSRISSDTQNIKARVILPNTGGQLRPGML 263
Cdd:pfam16576 152 PEQDLALVKVGQPAEVTLPALPGKTFEGKVDYIYPTLDPKTRTVRVRIELPNPDGRLKPGMF 213
PRK11556 PRK11556
MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit;
41-342 5.24e-25

MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit;


Pssm-ID: 183194 [Multi-domain]  Cd Length: 415  Bit Score: 104.49  E-value: 5.24e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  41 AETVRQSLAEPSIKLVSKLAANrSVAISPEVTGRIATIAVSSGQQVKQGQTLIALDAGKQQAELAE-QSASVRDEA---- 115
Cdd:PRK11556  65 ATATEQAVPRYLTGLGTVTAAN-TVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQaQGQLAKDQAtlan 143
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 116 --RKLRDMRKLVARGAVTTSELEGQEATVAQA-------QARVDAARYELSLRTLAAPFDGTVSLIDLSEGALVNSGDV- 185
Cdd:PRK11556 144 arRDLARYQQLAKTNLVSRQELDAQQALVSETegtikadEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTt 223
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 186 -LLHLDELAKLRLDLAVPE----RYLSLLRPGMAVTAtsSAWpDQSFS-----GVLETLDSRISSDTQNIKARVILPNTG 255
Cdd:PRK11556 224 gIVVITQTHPIDLVFTLPEsdiaTVVQAQKAGKPLVV--EAW-DRTNSkklseGTLLSLDNQIDATTGTIKLKARFNNQD 300
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 256 GQLRPGMLMNVDLSLPP-QKMTLIPAQSVEYAGEQRFVYRLEADGRVKRVPVELGDTHGEAVWVLKGLNVGDRIAVEGLV 334
Cdd:PRK11556 301 DALFPNQFVNARMLVDTlQNAVVIPTAALQMGNEGHFVWVLNDENKVSKHLVTPGIQDSQKVVISAGLSAGDRVVTDGID 380

                 ....*...
gi 743522012 335 NLRDGAQV 342
Cdd:PRK11556 381 RLTEGAKV 388
 
Name Accession Description Interval E-value
AcrA COG0845
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope ...
43-343 3.00e-78

Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms];


Pssm-ID: 440606 [Multi-domain]  Cd Length: 324  Bit Score: 242.54  E-value: 3.00e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  43 TVRQSLAEPSIKLVSKLAANRSVAISPEVTGRIATIAVSSGQQVKQGQTLIALDAGKQQAELAEQSASVR------DEAR 116
Cdd:COG0845    2 KVERGDVPETVEATGTVEARREVEVRARVSGRVEEVLVDEGDRVKKGQVLARLDPPDLQAALAQAQAQLAaaqaqlELAK 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 117 K-LRDMRKLVARGAVTTSELEGQEATVAQAQARVDAARYE-------LSLRTLAAPFDGTVSLIDLSEGALVNSGDVLLH 188
Cdd:COG0845   82 AeLERYKALLKKGAVSQQELDQAKAALDQAQAALAAAQAAleqaranLAYTTIRAPFDGVVGERNVEPGQLVSAGTPLFT 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 189 LDELAKLRLDLAVPERYLSLLRPGMAVTATSSAWPDQSFSGVLETLDSRISSDTQNIKARVILPNTGGQLRPGMLMNVDL 268
Cdd:COG0845  162 IADLDPLEVEFDVPESDLARLKVGQPVTVTLDAGPGKTFEGKVTFIDPAVDPATRTVRVRAELPNPDGLLRPGMFVRVRI 241
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 743522012 269 SLPPQKMTL-IPAQSVEYAGEQRFVYRLEADGRVKRVPVELGDTHGEAVWVLKGLNVGDRIAVEGLVNLRDGAQVR 343
Cdd:COG0845  242 VLGERENALlVPASAVVRDGGGAYVFVVDADGKVERRPVTLGRRDGDQVEVLSGLKAGDRVVVSGLQRLRDGAKVR 317
RND_mfp TIGR01730
RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion ...
41-343 9.05e-65

RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 273776 [Multi-domain]  Cd Length: 322  Bit Score: 207.94  E-value: 9.05e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012   41 AETVRQSLAEPSIKLVSKLAANRSVAISPEVTGRIATIAVSSGQQVKQGQTLIALDAGKQQ-------AELAEQSASVRD 113
Cdd:TIGR01730   3 VATVESETLANTLTFPGSLEAVDEADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQlalqaalAQLAAAEAQLEL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  114 EARKLRDMRKLVARGAVTTSELEGQEATVAQAQARV-------DAARYELSLRTLAAPFDGTVSLIDLSEGALVNSGDVL 186
Cdd:TIGR01730  83 AQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLeaakaslASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTL 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  187 LHLDELAKLRLDLAVPERYLSLLRPGMAVTATSSAWPDQSFSGVLETLDSRISSDTQNIKARVILPNTGGQLRPGMLMNV 266
Cdd:TIGR01730 163 ATIVDLDPLEADFSVPERDLPQLRRGQTLTVELDALPGEEFKGKLRFIDPRVDSGTGTVRVRATFPNPDGRLLPGMFGRV 242
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 743522012  267 DLSLP-PQKMTLIPAQSVEYAGEQRFVYRLEADGRVKRVPVELGDTHGEAVWVLKGLNVGDRIAVEGLVNLRDGAQVR 343
Cdd:TIGR01730 243 TISLKvRSSAIVVPTQAVIEDLNGKYVYVVKNDGKVSKRPVEVGLRNGGYVEIESGLKAGDQIVTAGVVKLRDGAKVK 320
EmrA COG1566
Multidrug resistance efflux pump EmrA [Defense mechanisms];
63-268 2.88e-29

Multidrug resistance efflux pump EmrA [Defense mechanisms];


Pssm-ID: 441174 [Multi-domain]  Cd Length: 331  Bit Score: 115.15  E-value: 2.88e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  63 RSVAISPEVTGRIATIAVSSGQQVKQGQTLIALDAGKQQAELAEQSASVR------------------------------ 112
Cdd:COG1566   44 RVVTVAAKVSGRVTEVLVKEGDRVKKGQVLARLDPTDLQAALAQAEAQLAaaeaqlarleaelgaeaeiaaaeaqlaaaq 123
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 113 ---DEARK-LRDMRKLVARGAVTTSELE----------------------------------GQEATVAQAQARVDAARY 154
Cdd:COG1566  124 aqlDLAQReLERYQALYKKGAVSQQELDearaaldaaqaqleaaqaqlaqaqaglreeeelaAAQAQVAQAEAALAQAEL 203
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 155 ELSLRTLAAPFDGTVSLIDLSEGALVNSGDVLLHLDELAKLRLDLAVPERYLSLLRPGMAVTATSSAWPDQSFSGVLETL 234
Cdd:COG1566  204 NLARTTIRAPVDGVVTNLNVEPGEVVSAGQPLLTIVPLDDLWVEAYVPETDLGRVKPGQPVEVRVDAYPDRVFEGKVTSI 283
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 743522012 235 DSRISS----------DTQNIKARVILPN-TGGQLRPGMLMNVDL 268
Cdd:COG1566  284 SPGAGFtsppknatgnVVQRYPVRIRLDNpDPEPLRPGMSATVEI 328
HlyD_D23 pfam16576
Barrel-sandwich domain of CusB or HlyD membrane-fusion; HlyD_D23 is the combined domains 2 and ...
51-263 6.65e-27

Barrel-sandwich domain of CusB or HlyD membrane-fusion; HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.


Pssm-ID: 435440 [Multi-domain]  Cd Length: 214  Bit Score: 105.67  E-value: 6.65e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012   51 PSIKLVSKLAAN--RSVAISPEVTGRIATIAVSS-GQQVKQGQTLIALDA---GKQQAE--LAEQSASVRDEARKLRDMR 122
Cdd:pfam16576   4 RTIRAVGRVAYDerRLAHVHARVEGWIEKLYVNAtGDPVKKGQPLAELYSpelVAAQQEylLALRSGDALSKSELLRAAR 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  123 -KLVARGaVTTSELEGQEATvAQAQARVdaaryelslrTLAAPFDGTVSLIDLSEGALVNSGDVLLHLDELAKLRLDLAV 201
Cdd:pfam16576  84 qRLRLLG-MPEAQIAELERT-GKVQPTV----------TVYAPISGVVTELNVREGMYVQPGDTLFTIADLSTVWVEADV 151
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 743522012  202 PERYLSLLRPGMAVTATSSAWPDQSFSGVLETLDSRISSDTQNIKARVILPNTGGQLRPGML 263
Cdd:pfam16576 152 PEQDLALVKVGQPAEVTLPALPGKTFEGKVDYIYPTLDPKTRTVRVRIELPNPDGRLKPGMF 213
PRK11556 PRK11556
MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit;
41-342 5.24e-25

MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit;


Pssm-ID: 183194 [Multi-domain]  Cd Length: 415  Bit Score: 104.49  E-value: 5.24e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  41 AETVRQSLAEPSIKLVSKLAANrSVAISPEVTGRIATIAVSSGQQVKQGQTLIALDAGKQQAELAE-QSASVRDEA---- 115
Cdd:PRK11556  65 ATATEQAVPRYLTGLGTVTAAN-TVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQaQGQLAKDQAtlan 143
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 116 --RKLRDMRKLVARGAVTTSELEGQEATVAQA-------QARVDAARYELSLRTLAAPFDGTVSLIDLSEGALVNSGDV- 185
Cdd:PRK11556 144 arRDLARYQQLAKTNLVSRQELDAQQALVSETegtikadEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTt 223
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 186 -LLHLDELAKLRLDLAVPE----RYLSLLRPGMAVTAtsSAWpDQSFS-----GVLETLDSRISSDTQNIKARVILPNTG 255
Cdd:PRK11556 224 gIVVITQTHPIDLVFTLPEsdiaTVVQAQKAGKPLVV--EAW-DRTNSkklseGTLLSLDNQIDATTGTIKLKARFNNQD 300
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 256 GQLRPGMLMNVDLSLPP-QKMTLIPAQSVEYAGEQRFVYRLEADGRVKRVPVELGDTHGEAVWVLKGLNVGDRIAVEGLV 334
Cdd:PRK11556 301 DALFPNQFVNARMLVDTlQNAVVIPTAALQMGNEGHFVWVLNDENKVSKHLVTPGIQDSQKVVISAGLSAGDRVVTDGID 380

                 ....*...
gi 743522012 335 NLRDGAQV 342
Cdd:PRK11556 381 RLTEGAKV 388
PRK15030 PRK15030
multidrug efflux RND transporter periplasmic adaptor subunit AcrA;
24-343 7.46e-17

multidrug efflux RND transporter periplasmic adaptor subunit AcrA;


Pssm-ID: 184990 [Multi-domain]  Cd Length: 397  Bit Score: 80.91  E-value: 7.46e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  24 RQAEPASKPAPReinIRAETVRQSLAEPSIKLVSKLAANRSVAISPEVTGRIATIAVSSGQQVKQGQTLIALDAGKQQA- 102
Cdd:PRK15030  28 KQAQQGGQQMPA---VGVVTVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQAt 104
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 103 ------ELAEQSASVRDEARKLRDMRKLVARGAVTTSELE-----GQEAT--VAQAQARVDAARYELSLRTLAAPFDGTV 169
Cdd:PRK15030 105 ydsakgDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDqaladAQQANaaVTAAKAAVETARINLAYTKVTSPISGRI 184
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 170 SLIDLSEGALVNSGDV--LLHLDELAKLRLDLAVPERYLSLLRPGMA---------------VTATSSAWPDqsfSGVLE 232
Cdd:PRK15030 185 GKSNVTEGALVQNGQAtaLATVQQLDPIYVDVTQSSNDFLRLKQELAngtlkqengkakvslITSDGIKFPQ---DGTLE 261
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 233 TLDSRISSDTQNIKARVILPNTGGQLRPGMLMNVDLS--LPPQKMtLIPAQSVEYAGE-QRFVYRLEADGRVKRVPVELG 309
Cdd:PRK15030 262 FSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEegLNPNAI-LVPQQGVTRTPRgDATVLVVGADDKVETRPIVAS 340
                        330       340       350
                 ....*....|....*....|....*....|....
gi 743522012 310 DTHGEAVWVLKGLNVGDRIAVEGLVNLRDGAQVR 343
Cdd:PRK15030 341 QAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVK 374
PRK09783 PRK09783
copper/silver efflux system membrane fusion protein CusB; Provisional
160-333 7.82e-16

copper/silver efflux system membrane fusion protein CusB; Provisional


Pssm-ID: 236625 [Multi-domain]  Cd Length: 409  Bit Score: 77.99  E-value: 7.82e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 160 TLAAPFDGTVSLIDLSEGALVNSGDVLLHLDELAKLRLDLAVPERYLSLLRPGMAVTATSSAWPDQSFSGVLETLDSRIS 239
Cdd:PRK09783 211 TLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWLVKDASQFTLTVPARPDKTFTIRKWTLLPSVD 290
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 240 SDTQNIKARVILPNTGGQLRPGMLMNVDLSLPPQKMTLIPAQSVEYAGEQRFVYRLEADGRV--KRVPVeLGDTHGEAVw 317
Cdd:PRK09783 291 AATRTLQLRLEVDNADEALKPGMNAWLQLNTASEPMLLIPSQALIDTGSEQRVITVDADGRFvpKRVAV-FQESQGVTA- 368
                        170
                 ....*....|....*.
gi 743522012 318 VLKGLNVGDRIAVEGL 333
Cdd:PRK09783 369 IRSGLAEGEKVVSSGL 384
PRK09859 PRK09859
multidrug transporter subunit MdtE;
30-343 1.15e-14

multidrug transporter subunit MdtE;


Pssm-ID: 137559 [Multi-domain]  Cd Length: 385  Bit Score: 74.37  E-value: 1.15e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  30 SKPAPREINIRAETVRQSLAEPSIKLVSKLAAnRSVA-----ISPEVTGRIATIAVSSGQQVKQGQTLIALDAGKQQAEL 104
Cdd:PRK09859  23 DKSAENAAAMTPEVGVVTLSPGSVNVLSELPG-RTVPyevaeIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAEL 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 105 AEQSASVRDEARKLRDMRKLVARGA--------------VTTSELEGQEATVAQAQARVDAARYELSLRTLAAPFDGTVS 170
Cdd:PRK09859 102 NSAKGSLAKALSTASNARITFNRQAsllktnyvsrqdydTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSG 181
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 171 LIDLSEGALV--NSGDVLLHLDELAKLRLDLAVPERYLSLLRPGMA---VTATSSAWPDQ---------SFSGVLETLDS 236
Cdd:PRK09859 182 KSSVTVGALVtaNQADSLVTVQRLDPIYVDLTQSVQDFLRMKEEVAsgqIKQVQGSTPVQlnlengkrySQTGTLKFSDP 261
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 237 RISSDTQNIKARVILPNTGGQLRPGMLMNVDLSLPP-QKMTLIPAQSVEYAGEQRFVYR-LEADGRVKRVPVELGDTHGE 314
Cdd:PRK09859 262 TVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSrQNVLLVPQEGVTHNAQGKATALiLDKDDVVQLREIEASKAIGD 341
                        330       340
                 ....*....|....*....|....*....
gi 743522012 315 AVWVLKGLNVGDRIAVEGLVNLRDGAQVR 343
Cdd:PRK09859 342 QWVVTSGLQAGDRVIVSGLQRIRPGIKAR 370
PRK11578 PRK11578
macrolide transporter subunit MacA; Provisional
44-330 1.70e-14

macrolide transporter subunit MacA; Provisional


Pssm-ID: 183211 [Multi-domain]  Cd Length: 370  Bit Score: 73.66  E-value: 1.70e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  44 VRQSLAEPSIKLVSKLAANRSVAISPEVTGRIATIAVSSGQQVKQGQ-------------------TLIALDAGKQQAE- 103
Cdd:PRK11578  41 VRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQllgvidpeqaenqikeveaTLMELRAQRQQAEa 120
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 104 --------LAEQSASVRDEARKLRDMRKLVARGAVTTSELEGQEATVAQAQARVDAARYELSLRTLAAPFDGTVSLIDLS 175
Cdd:PRK11578 121 elklarvtLSRQQRLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTL 200
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 176 EGALV---NSGDVLLHLDELAKLRLDLAVPERYLSLLRPGMAVTATSSAWPDQSFSGVLETLDSRISSDTQNI--KARVI 250
Cdd:PRK11578 201 QGQTViaaQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGVLKDILPTPEKVNDAIfyYARFE 280
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 251 LPNTGGQLRPGMLMNVDLSLPPQKMTL-IPAQSV-EYAGEQRFVYRLEADGRVKRVPVELGDTHGEAVWVLKGLNVGDRI 328
Cdd:PRK11578 281 VPNPNGLLRLDMTAQVHIQLTDVKNVLtIPLSALgDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEV 360

                 ..
gi 743522012 329 AV 330
Cdd:PRK11578 361 II 362
PRK09578 PRK09578
MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit;
28-343 4.22e-13

MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit;


Pssm-ID: 169982 [Multi-domain]  Cd Length: 385  Bit Score: 69.44  E-value: 4.22e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  28 PASKPAPREINIRaeTVRQSLAEPSIKLVSKLAANRSVAISPEVTGRIATIAVSSGQQVKQGQTLIALD-----AGKQQA 102
Cdd:PRK09578  29 DAAAAAPREATVV--TVRPTSVPMTVELPGRLDAYRQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDpaplkAARDAA 106
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 103 E--LAEQSASVRDEARKLRDMRKLVARGAVttSELEGQEAT---------VAQAQARVDAARYELSLRTLAAPFDGTVSL 171
Cdd:PRK09578 107 AgaLAKAEAAHLAALDKRRRYDDLVRDRAV--SERDYTEAVaderqakaaVASAKAELARAQLQLDYATVTAPIDGRARR 184
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 172 IDLSEGALV--NSGDVLLHLDELAKLRLDLAVPERYLSLLRPGM-------------AVT---ATSSAWPdqsFSGVLET 233
Cdd:PRK09578 185 ALVTEGALVgqDQATPLTTVEQLDPIYVNFSQPAADVEALRRAVksgratgiaqqdvAVTlvrADGSEYP---LKGKLLF 261
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 234 LDSRISSDTQNIKARVILPNTGGQLRPGMLMNVDLSLP-PQKMTLIPAQSVEYAGEQRFVYRLEADGRVKRVPVELGDTH 312
Cdd:PRK09578 262 SDLAVDPTTDTVAMRALFPNPERELLPGAYVRIALDRAvNPRAILVPRDALLRTADSASVKVVGQNGKVRDVEVEADQMS 341
                        330       340       350
                 ....*....|....*....|....*....|.
gi 743522012 313 GEAVWVLKGLNVGDRIAVEGLVNLRDGAQVR 343
Cdd:PRK09578 342 GRDWIVTRGLAGGERVIVDNAAQFAPGTAVK 372
HlyD_3 pfam13437
HlyD family secretion protein; This is a family of largely bacterial haemolysin translocator ...
160-261 1.32e-12

HlyD family secretion protein; This is a family of largely bacterial haemolysin translocator HlyD proteins.


Pssm-ID: 433206 [Multi-domain]  Cd Length: 104  Bit Score: 63.15  E-value: 1.32e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  160 TLAAPFDGTVSLIDLSEGALVNSGDVLLHLDELAKLRLDLAVPERYLSLLRPGMAVTATSSAWPDQSFSGVLETLDSRIS 239
Cdd:pfam13437   1 TIRAPVDGVVAELNVEEGQVVQAGDPLATIVPPDRLLVEAFVPAADLGSLKKGQKVTLKLDPGSDYTLEGKVVRISPTVD 80
                          90       100
                  ....*....|....*....|....
gi 743522012  240 SDTQNIKARVILPNTGGQ--LRPG 261
Cdd:pfam13437  81 PDTGVIPVRVSIENPKTPipLLPG 104
PRK10559 PRK10559
p-hydroxybenzoic acid efflux pump subunit AaeA;
65-218 4.67e-10

p-hydroxybenzoic acid efflux pump subunit AaeA;


Pssm-ID: 182548 [Multi-domain]  Cd Length: 310  Bit Score: 59.75  E-value: 4.67e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  65 VAISPEVTGRIATIAVSSGQQVKQGQTLIALDAGKQQAELAEQSASV-----------RDEARKLRDMRKLVARGAVTTS 133
Cdd:PRK10559  48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVayyqvlaqekrREAGRRNRLGVQAMSREEIDQA 127
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 134 --ELEGQEATVAQAQARVDAARYELSLRTLAAPFDGTVSLIDLSEGALVNSGDVLLHLDELAKLRLDLAVPERYLSLLRP 211
Cdd:PRK10559 128 nnVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQNSFYVLAYMEETKLEGVRP 207

                 ....*..
gi 743522012 212 GMAVTAT 218
Cdd:PRK10559 208 GYRAEIT 214
PRK03598 PRK03598
putative efflux pump membrane fusion protein; Provisional
63-272 1.47e-09

putative efflux pump membrane fusion protein; Provisional


Pssm-ID: 235136 [Multi-domain]  Cd Length: 331  Bit Score: 58.43  E-value: 1.47e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  63 RSVAISPEVTGRIATIAVSSGQQVKQGQTLIALDAGKQQ---------------------------------AELAEQSA 109
Cdd:PRK03598  42 RTVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAAPYEnalmqakanvsvaqaqldlmlagyrdeeiaqarAAVKQAQA 121
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 110 SVRDEARKLRDMRKLVARGAVTTSELEGQEATVAQAQARVDAARYELSL------------------------------- 158
Cdd:PRK03598 122 AYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLSQyregnrpqdiaqakaslaqaqaalaqaelnl 201
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 159 --RTLAAPFDGTVSLIDLSEGALVNSGDVL--LHLDELAKLRldLAVPERYLSLLRPGMAVTATSSAWPDQSFSGVL--- 231
Cdd:PRK03598 202 qdTELIAPSDGTILTRAVEPGTMLNAGSTVftLSLTRPVWVR--AYVDERNLGQAQPGRKVLLYTDGRPDKPYHGQIgfv 279
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 743522012 232 -----------ETLDSRissdTQNI-KARVILPNTGGQLRPGMLMNVDLSLPP 272
Cdd:PRK03598 280 sptaeftpktvETPDLR----TDLVyRLRIVVTDADDALRQGMPVTVRFADEA 328
CusB_dom_1 pfam00529
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ...
63-183 1.82e-07

Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.


Pssm-ID: 425733 [Multi-domain]  Cd Length: 322  Bit Score: 52.04  E-value: 1.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012   63 RSVAISPEVTGRIATIAVSSGQQVKQGQTLIALDAGKQQAEL----AEQSASVRDEAR---KLRDMRKLVARGAVT---- 131
Cdd:pfam00529  19 NAKAVQPQVSGIVTRVLVKEGDRVKAGDVLFQLDPTDYQAALdsaeAQLAKAQAQVARlqaELDRLQALESELAISrqdy 98
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 743522012  132 ---TSELEGQEATVAQAQARVDAARYELSLRTLAAPFDGTVSLIDLSEGALVNSG 183
Cdd:pfam00529  99 dgaTAQLRAAQAAVKAAQAQLAQAQIDLARRRVLAPIGGISRESLVTAGALVAQA 153
Biotin_lipoyl_2 pfam13533
Biotin-lipoyl like;
63-112 3.71e-07

Biotin-lipoyl like;


Pssm-ID: 433286  Cd Length: 50  Bit Score: 46.28  E-value: 3.71e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 743522012   63 RSVAISPEVTGRIATIAVSSGQQVKQGQTLIALDAGKQQAELAEQSASVR 112
Cdd:pfam13533   1 PVVKIASPVSGKVVAVNVKEGQQVKKGDVLATLDSPELQLQLQQAEAQLA 50
PRK10476 PRK10476
multidrug transporter subunit MdtN;
65-241 8.91e-06

multidrug transporter subunit MdtN;


Pssm-ID: 182488 [Multi-domain]  Cd Length: 346  Bit Score: 46.94  E-value: 8.91e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  65 VAISPEVTGRIATIAVSSGQQVKQGQTLIALD-------AGKQQAEL---------------AEQS-ASVRDE------- 114
Cdd:PRK10476  49 VHVASEVGGRIVELAVTENQAVKKGDLLFRIDprpyeltVAQAQADLaladaqimttqrsvdAERSnAASANEqverara 128
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 115 -----ARKLRDMRKLVARGAVTT-------------------------------SELEGQEATVAQAQARVDAARYELSL 158
Cdd:PRK10476 129 naklaTRTLERLEPLLAKGYVSAqqvdqartaqrdaevslnqallqaqaaaaavGGVDALVAQRAAREAALAIAELHLED 208
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012 159 RTLAAPFDGTVSLIDLSEGALVNSGDV---LLHLDE---LAKLRldlavpERYLSLLRPGMAVTATSSAWPDQSFSGVLE 232
Cdd:PRK10476 209 TTVRAPFDGRVVGLKVSVGEFAAPMQPiftLIDTDHwyaIANFR------ETDLKNIRVGDCATVYSMIDRGRPFEGKVD 282

                 ....*....
gi 743522012 233 TLDSRISSD 241
Cdd:PRK10476 283 SIGWGVLPD 291
PycA COG1038
Pyruvate carboxylase [Energy production and conversion]; Pyruvate carboxylase is part of the ...
34-187 5.85e-05

Pyruvate carboxylase [Energy production and conversion]; Pyruvate carboxylase is part of the Pathway/BioSystem: Urea cycle


Pssm-ID: 440660 [Multi-domain]  Cd Length: 1144  Bit Score: 45.07  E-value: 5.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012   34 PREINIRAETVrqslaepSIKLVSKLAANRSVA--ISPEVTGRIATIAVSSGQQVKQGQTLIALDAGKqqaelaeqsasv 111
Cdd:COG1038  1051 PREVRVRDRSV-------KVTVASREKADPGNPghIGAPMPGTVVKVLVKEGDEVKKGDPLLTIEAMK------------ 1111
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 743522012  112 rdearklrdMrklvargavttselegqEATVaqaqarvdaaryelslrtlAAPFDGTVSLIDLSEGALVNSGDVLL 187
Cdd:COG1038  1112 ---------M-----------------ETTI-------------------TAPRDGTVKEVLVKEGDQVEAGDLLI 1142
PRK12999 PRK12999
pyruvate carboxylase; Reviewed
34-191 9.63e-04

pyruvate carboxylase; Reviewed


Pssm-ID: 237263 [Multi-domain]  Cd Length: 1146  Bit Score: 41.28  E-value: 9.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012   34 PREINIRAETVrqslaEPSIKLVSKlaANRSVA--ISPEVTGRIATIAVSSGQQVKQGQTLIALDAGKQQAelaeqsasv 111
Cdd:PRK12999 1051 PREVQVRDRSV-----KSTVAAREK--ADPGNPghVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMKMET--------- 1114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522012  112 rdearklrdmrklvargavttselegqeatvaqaqarvdaaryelslrTLAAPFDGTVSLIDLSEGALVNSGDVLLHLDE 191
Cdd:PRK12999 1115 ------------------------------------------------TITAPVDGTVKRVLVKAGDQVEAGDLLVELEP 1146
PRK05641 PRK05641
putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
26-104 7.84e-03

putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235540 [Multi-domain]  Cd Length: 153  Bit Score: 36.38  E-value: 7.84e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 743522012  26 AEPASKPAPREINIRAETVRQSLAEPSIklvsklAANRSVAISPeVTGRIATIAVSSGQQVKQGQTLIALDAGKQQAEL 104
Cdd:PRK05641  53 PTPAPAPAPAVPSAPTPVAPAAPAPAPA------SAGENVVTAP-MPGKILRILVREGQQVKVGQGLLILEAMKMENEI 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH