|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
1-472 |
0e+00 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 928.71 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 1 MSKVNTQHLAQLIERIGGKENITTVSHCLTRLRFVLADPAKADPKAIETIPSVKGSFTQGGQFQVVIGNEVDQWYKALTQ 80
Cdd:PRK11007 2 MSKINQQDIDRLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGTEVGDYYKALIA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 81 EIGVSGGSKEAAKQAARHNMNPLERGISHLAEIFVPLLPAIITGGLILGFRNVIGDIKMFDDgtHTLTEISQFWAQVHAF 160
Cdd:PRK11007 82 TTGQAEVDKEQAKKAARQNMKWHERLISHFAEIFFPLLPALISGGLILGFRNVIGDIPMSDG--QTLAQMYPFWQTIYDF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 161 LWLLGEAIFHFLPVGVCWSAVKKMGGSEILGIVLGITLVSPQLMNAYGIGQQTPEVWDFGLFVIQKVGYQAQVIPALLAG 240
Cdd:PRK11007 160 LWLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPEVWDFGLFSIEKVGYQAQVIPALLAG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 241 VFLAWVETSLKRIIPAYLYLVIVPFISLLLAVIVAHALIGPFGRWIGDGVGFAAKAAMTGSFAPIGAALFGFLYAPLVIT 320
Cdd:PRK11007 240 LALGFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVKALMTGSFAPIGAALFGFLYAPLVIT 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 321 GIHHTTNAVDLQLMQSMGGTPIWPLIALSNIAQASAVVGIILISRKENEREISVPAAISAYLGVTEPAMYGINLKYKFPM 400
Cdd:PRK11007 320 GVHQTTLAIDLQMIQSMGGTPVWPLIALSNIAQASAVVGIIIISRKHNEREISVPAAISAYLGVTEPAMYGINLKYRFPM 399
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 743522435 401 LCAMVGSSCAALICGFAGVMANGIGVGGLPGILSIQPQYWGIYAIAMLVAIVVPALLTLLVYKRQQAAGKLD 472
Cdd:PRK11007 400 LCAMIGSALAGLICGLNGVMANGIGVGGLPGILSIQPQYWQVYALAMLVAIVVPIVLTSFIYKRKERLGTLD 471
|
|
| PTS-IIBC-Tre |
TIGR01992 |
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and ... |
11-463 |
0e+00 |
|
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Pssm-ID: 273916 Cd Length: 462 Bit Score: 636.77 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 11 QLIERIGGKENITTVSHCLTRLRFVLADPAKADPKAIETIPSVKGSFTQGGQFQVVIG-NEVDQWYKALTQEIGVSGGSK 89
Cdd:TIGR01992 6 AILEAIGGKENIEAATHCVTRLRFVLKDPSKVDVKALEQIDLVKGSFTNAGQFQVVIGpGTVDKVYAALIAETGIAEVSK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 90 EAAKQAARHNMNPLERGISHLAEIFVPLLPAIITGGLILGFRNVIGDIKMFDDGtHTLTEISQFWAQVHAFLWLLGEAIF 169
Cdd:TIGR01992 86 EEVKKAAAKNMNPLQRLIKLLADIFIPILPAIITAGLLMGINNLLGAKGMSFGG-QTLVEVYPQWAGIYNFINLIAETAF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 170 HFLPVGVCWSAVKKMGGSEILGIVLGITLVSPQLMNAYGIGQQTPE----VWD-FGLFVIQKVGYQAQVIPALLAGVFLA 244
Cdd:TIGR01992 165 HFLPALIGWSAVKKFGGSPILGIVLGLMLVHPQLLNAYLYGQALAEgnipVWDlFGFFEIQKVGYQGQVLPALLAGYVLA 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 245 WVETSLKRIIPAYLYLVIVPFISLLLAVIVAHALIGPFGRWIGDGVGFAAKAAMTgSFAPIGAALFGFLYAPLVITGIHH 324
Cdd:TIGR01992 245 VIEKWLRKRVPDAIQLLVVPPVSLLVTGFLAHAIIGPIGRLIGNGITSGVTALFT-SAAWLGGAIFGLLYAPLVITGLHH 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 325 TTNAVDLQLMQSMGGTPIWPLIALSNIAQASAVVGIILISRKENEREISVPAAISAYLGVTEPAMYGINLKYKFPMLCAM 404
Cdd:TIGR01992 324 MFLAVDLQLIGSLGGTFLWPMIALSNIAQGSAALGIIFMSRNEKEKGLSLTSAISAYLGVTEPAMFGVNLKYKFPFIAAM 403
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 743522435 405 VGSSCAALICGFAGVMANGIGVGGLPGILSIQPQYWGIYAIAMLVAIVVPALLTLLVYK 463
Cdd:TIGR01992 404 IGSGLAGLLSGLNGVLANSIGVGGLPGFISIQPQYWPVFAIGMAIAIVVPFVLTIFFSK 462
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
96-476 |
2.20e-102 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 313.80 E-value: 2.20e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 96 ARHNMNPLERGISHLAEIFVPLLPAIITGGLILGFRNVIGDIKMFDDGThtlteisqFWAQVHAFLWLLGEAIFHFLPVG 175
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEGS--------FLSGTYQILNAAGDAVFYFLPLL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 176 VCWSAVKKMGGSEILGIVLGITLVSPQLMNAYGIGqqtPEVWDFgLFVIQKVGYQAQVIPALLAGVFLAWVETSLKRIIP 255
Cdd:COG1263 73 FAIGAAKGFGGNPALAAVIGYLLVHPTLLNAYAVA---GGYISF-LGIPTLIGYQGGVFPGILAGWLAAYLEKFLKKKLP 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 256 AYLYLVIVPFISLLLAVIVAHALIGPFGRWIGDGVGFAAKaAMTGSFAPIGAALFGFLYAPLVITGIHHTTNAVDLQLMQ 335
Cdd:COG1263 149 DALGFFFVPILTLLIMVPLALLVIGPIWPPIGNGIAAGLG-WIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLG 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 336 SMGGTPIWPLIALSNIAQASAVVGIILISR-KENEREISVPAAISAYL-GVTEPAMYGINLKYKFPMLCAMVGSSCAALI 413
Cdd:COG1263 228 GTGDDGLFPILAAAMFGQPGAALAVYLKAKpNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAI 307
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 743522435 414 CGFAGVMANGIGVGGLPGILSIQPQ---YWGIYAIAMLVAIVVPALLTLLVYKRQQAAGKLDLATA 476
Cdd:COG1263 308 AGLLGVKAFSFGVGGLIDFPSILNPgatNLLLYLIGLVIAFVYYFVFTFLIGREDEEEEEKLATKA 373
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
10-83 |
8.68e-26 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 99.92 E-value: 8.68e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 743522435 10 AQLIERIGGKENITTVSHCLTRLRFVLADPAKADPKAIETIPSVKGSFTQGGQFQVVIGNEVDQWYKALTQEIG 83
Cdd:cd00212 5 KDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEAIKLLG 78
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
112-401 |
1.24e-22 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 98.19 E-value: 1.24e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 112 EIFVPLLPAIITGGLILGFRNVIGDIKMFDDGthtlteISQFWAQVHAFLWLLGEAIFHFLPVGVCWSAVKKMGGSE-IL 190
Cdd:pfam02378 2 DGFMPPIPLLIAGGILLGLGNLPNDTTGLPAG------GFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGGDgVA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 191 GIVLGITLVSPQLMNAYGIG---QQTPEVWDFGLFVIQKVGYQAQVIPALLAGVFLAWVETSLKRIIPAYLYLVIVPFIS 267
Cdd:pfam02378 76 GAAGLIGLLSFNLAAAISVAltaAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFV 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 268 LLLAVIVAHALIGPFGRWIGDGVGFAAKAA---MTGSFAPIGAALFGFLYAPLVITGIHHTTNAVDLQL-----MQSMGG 339
Cdd:pfam02378 156 PIITGFVTLLVIGPVLGLIWPAIQGGLNALgllLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLpiggsNPIANQ 235
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 743522435 340 TPIWP----------LIALSNIAQASAVVGII-LISRKENEREISVPAAISAYLGVTEPAMYGINLKYKFPML 401
Cdd:pfam02378 236 QAYGAgaahiltggfDVMFGGPGATLALYAAAfLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFF 308
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
1-472 |
0e+00 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 928.71 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 1 MSKVNTQHLAQLIERIGGKENITTVSHCLTRLRFVLADPAKADPKAIETIPSVKGSFTQGGQFQVVIGNEVDQWYKALTQ 80
Cdd:PRK11007 2 MSKINQQDIDRLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGTEVGDYYKALIA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 81 EIGVSGGSKEAAKQAARHNMNPLERGISHLAEIFVPLLPAIITGGLILGFRNVIGDIKMFDDgtHTLTEISQFWAQVHAF 160
Cdd:PRK11007 82 TTGQAEVDKEQAKKAARQNMKWHERLISHFAEIFFPLLPALISGGLILGFRNVIGDIPMSDG--QTLAQMYPFWQTIYDF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 161 LWLLGEAIFHFLPVGVCWSAVKKMGGSEILGIVLGITLVSPQLMNAYGIGQQTPEVWDFGLFVIQKVGYQAQVIPALLAG 240
Cdd:PRK11007 160 LWLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPEVWDFGLFSIEKVGYQAQVIPALLAG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 241 VFLAWVETSLKRIIPAYLYLVIVPFISLLLAVIVAHALIGPFGRWIGDGVGFAAKAAMTGSFAPIGAALFGFLYAPLVIT 320
Cdd:PRK11007 240 LALGFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVKALMTGSFAPIGAALFGFLYAPLVIT 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 321 GIHHTTNAVDLQLMQSMGGTPIWPLIALSNIAQASAVVGIILISRKENEREISVPAAISAYLGVTEPAMYGINLKYKFPM 400
Cdd:PRK11007 320 GVHQTTLAIDLQMIQSMGGTPVWPLIALSNIAQASAVVGIIIISRKHNEREISVPAAISAYLGVTEPAMYGINLKYRFPM 399
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 743522435 401 LCAMVGSSCAALICGFAGVMANGIGVGGLPGILSIQPQYWGIYAIAMLVAIVVPALLTLLVYKRQQAAGKLD 472
Cdd:PRK11007 400 LCAMIGSALAGLICGLNGVMANGIGVGGLPGILSIQPQYWQVYALAMLVAIVVPIVLTSFIYKRKERLGTLD 471
|
|
| PTS-IIBC-Tre |
TIGR01992 |
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and ... |
11-463 |
0e+00 |
|
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Pssm-ID: 273916 Cd Length: 462 Bit Score: 636.77 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 11 QLIERIGGKENITTVSHCLTRLRFVLADPAKADPKAIETIPSVKGSFTQGGQFQVVIG-NEVDQWYKALTQEIGVSGGSK 89
Cdd:TIGR01992 6 AILEAIGGKENIEAATHCVTRLRFVLKDPSKVDVKALEQIDLVKGSFTNAGQFQVVIGpGTVDKVYAALIAETGIAEVSK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 90 EAAKQAARHNMNPLERGISHLAEIFVPLLPAIITGGLILGFRNVIGDIKMFDDGtHTLTEISQFWAQVHAFLWLLGEAIF 169
Cdd:TIGR01992 86 EEVKKAAAKNMNPLQRLIKLLADIFIPILPAIITAGLLMGINNLLGAKGMSFGG-QTLVEVYPQWAGIYNFINLIAETAF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 170 HFLPVGVCWSAVKKMGGSEILGIVLGITLVSPQLMNAYGIGQQTPE----VWD-FGLFVIQKVGYQAQVIPALLAGVFLA 244
Cdd:TIGR01992 165 HFLPALIGWSAVKKFGGSPILGIVLGLMLVHPQLLNAYLYGQALAEgnipVWDlFGFFEIQKVGYQGQVLPALLAGYVLA 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 245 WVETSLKRIIPAYLYLVIVPFISLLLAVIVAHALIGPFGRWIGDGVGFAAKAAMTgSFAPIGAALFGFLYAPLVITGIHH 324
Cdd:TIGR01992 245 VIEKWLRKRVPDAIQLLVVPPVSLLVTGFLAHAIIGPIGRLIGNGITSGVTALFT-SAAWLGGAIFGLLYAPLVITGLHH 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 325 TTNAVDLQLMQSMGGTPIWPLIALSNIAQASAVVGIILISRKENEREISVPAAISAYLGVTEPAMYGINLKYKFPMLCAM 404
Cdd:TIGR01992 324 MFLAVDLQLIGSLGGTFLWPMIALSNIAQGSAALGIIFMSRNEKEKGLSLTSAISAYLGVTEPAMFGVNLKYKFPFIAAM 403
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 743522435 405 VGSSCAALICGFAGVMANGIGVGGLPGILSIQPQYWGIYAIAMLVAIVVPALLTLLVYK 463
Cdd:TIGR01992 404 IGSGLAGLLSGLNGVLANSIGVGGLPGFISIQPQYWPVFAIGMAIAIVVPFVLTIFFSK 462
|
|
| PTS-II-BC-sucr |
TIGR01996 |
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C ... |
5-460 |
8.23e-125 |
|
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Pssm-ID: 131051 Cd Length: 461 Bit Score: 371.25 E-value: 8.23e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 5 NTQHLAQ-LIERIGGKENITTVSHCLTRLRFVLADPAKADPKAIETIPSVKGSFTQGGQFQVVIGN-EVDQWYKALTQEI 82
Cdd:TIGR01996 1 NYQQVAKeILELLGGKDNIVSVAHCATRLRLVLKDESKIDKKAIENLDGVKGTFFNSGQYQIIIGTgVVNKVYDEIVKLT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 83 GVSGGSKEAAKQAARHNMNPLERGISHLAEIFVPLLPAIITGGLILGFRNVIGDIKMFDDGTHTLTEISQFWAQvhaFLW 162
Cdd:TIGR01996 81 GLSESSTSEQKAEAAKKMNPFQRFARTLSDIFVPIIPAIVATGLLMGLNGMLTAFGLFGLSGVSVAPIPEGLAE---MIN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 163 LLGEAIFHFLPVGVCWSAVKKMGGSEILGIVLGITLVSPQLMNAYGIGQQTPEV--WDFGLFVIQKVGYQAQVIPALLAG 240
Cdd:TIGR01996 158 VFTSTAFAFLPILIGFSAAKRFGGNPYLGAVIGLIMVHPSLPNAYGVAAGTATGkaWNIFGLHIPVVGYQGTVLPVLVAV 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 241 VFLAWVETSLKRIIPAYLYLVIVPFISLLLAVIVAHALIGPFGRWIGDGVGFAAKAAMTGSFaPIGAALFGFLYAPLVIT 320
Cdd:TIGR01996 238 WILAKIEKFLRKVVPNALDLLLTPFLTLLITGFLTLLVIGPIGRWVGDVLTDGLQWLYDLPG-GLGGLLFGGLYSLIVIT 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 321 GIHHTTNAVDLQLMQS--MGGTPIWPLIALSNIAQASAVVGIILISRKENEREISVPAAISAYLGVTEPAMYGINLKYKF 398
Cdd:TIGR01996 317 GIHHSFHAIETQLLANtkTGGNFLFPIASMANVAQGGAALAVFFKTKDKKLKGLAIPSGLSALLGITEPAIFGVNLRYRK 396
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 743522435 399 PMLCAMVGSSCAALICGFAGVMANGIGVGGLPGILSIQPQY--WGIYAIAMLVAIVVPALLTLL 460
Cdd:TIGR01996 397 PFIAALIGGAIGGAYVVLFHVAATAYGLTGIPGFLSILPSGinLLHYIVGMLIAFAVAFIATLL 460
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
96-476 |
2.20e-102 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 313.80 E-value: 2.20e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 96 ARHNMNPLERGISHLAEIFVPLLPAIITGGLILGFRNVIGDIKMFDDGThtlteisqFWAQVHAFLWLLGEAIFHFLPVG 175
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEGS--------FLSGTYQILNAAGDAVFYFLPLL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 176 VCWSAVKKMGGSEILGIVLGITLVSPQLMNAYGIGqqtPEVWDFgLFVIQKVGYQAQVIPALLAGVFLAWVETSLKRIIP 255
Cdd:COG1263 73 FAIGAAKGFGGNPALAAVIGYLLVHPTLLNAYAVA---GGYISF-LGIPTLIGYQGGVFPGILAGWLAAYLEKFLKKKLP 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 256 AYLYLVIVPFISLLLAVIVAHALIGPFGRWIGDGVGFAAKaAMTGSFAPIGAALFGFLYAPLVITGIHHTTNAVDLQLMQ 335
Cdd:COG1263 149 DALGFFFVPILTLLIMVPLALLVIGPIWPPIGNGIAAGLG-WIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLG 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 336 SMGGTPIWPLIALSNIAQASAVVGIILISR-KENEREISVPAAISAYL-GVTEPAMYGINLKYKFPMLCAMVGSSCAALI 413
Cdd:COG1263 228 GTGDDGLFPILAAAMFGQPGAALAVYLKAKpNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAI 307
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 743522435 414 CGFAGVMANGIGVGGLPGILSIQPQ---YWGIYAIAMLVAIVVPALLTLLVYKRQQAAGKLDLATA 476
Cdd:COG1263 308 AGLLGVKAFSFGVGGLIDFPSILNPgatNLLLYLIGLVIAFVYYFVFTFLIGREDEEEEEKLATKA 373
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
10-466 |
1.94e-79 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 258.82 E-value: 1.94e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 10 AQLIERIGGKENITTVSHCLTRLRFVLADPAKADPKAIETIPSVKGSFTQGGQFQVVIGNEVDQWYKALtqeIGVSGGSK 89
Cdd:TIGR01995 6 KAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDVNDVYQAL---MDVLGLDD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 90 EAAKQAARHNMNPLERGISHLAEIFVPLLPAIITGGLILGFRNVIgdikmfddgthTLTEISQFWAQVHAFLWLLGEAIF 169
Cdd:TIGR01995 83 QAEDDDSKGKKSILNKLIDLISGVFTPLLPALAGAGLLKAVLTLL-----------TMTGLISADSQTYQILNAMGDAVF 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 170 HFLPVGVCWSAVKKMGGSEILGIVLGITLVSPQLMNAYGIGQqtpEVWDFGLFVIQkVGYQAQVIPALLAGVFLAWVETS 249
Cdd:TIGR01995 152 YFLPILLAITAAKRFKVNPYLAAAIGAALLHPTLVAMVGSGK---PVTFFGIPVTL-MSYSSSVIPVILAVWLMSYVEKF 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 250 LKRIIPAYLYLVIVPFISLLLAVIVAHALIGPFGRWIGDgvGFAAKAAMTGSFAP-IGAALFGFLYAPLVITGIHHTTNA 328
Cdd:TIGR01995 228 LKKVIPGALKNFLTPLLVMLITVPLTLLIIGPLGNYAGE--GISSGILFLYEVSPwLAGALLAALWPVLVMFGLHWAMIP 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 329 VDLQLMQSMG-GTPIWPLIALSNIAQASAVVGIILISRKENEREISVPAAISAYLGVTEPAMYGINLKYKFPMLCAMVGS 407
Cdd:TIGR01995 306 IVINNIATQGfDPLILPASLAANFAQGGAALAVMLRTKNKKLKALAGSATISALFGITEPAIYGVNLPLKKPFYAAMIGG 385
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 743522435 408 SCAALICGFAGVMANGIGVGGLPGILSI----QPQYWGIYAIAMLVAIVVPALLTLLVYKRQQ 466
Cdd:TIGR01995 386 AVGGAIIGIGSVKAFTAFAPGLLGLPMFinpsDGANFISALIAIVISFVVSFVLTYFIGFKDQ 448
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
165-449 |
2.37e-77 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 243.38 E-value: 2.37e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 165 GEAIFHFLPVGVCWSAVKKMGGSEILGIVLGITLVSPQLMNAYGIGQQTPEvwDFGLFVIQKVGYQAQVIPALLAGVFLA 244
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQAVG--NFFGFEIAKVGYTGVVGPIIVGAIALA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 245 WVETSLKRIIPAYLYLVIVPFISLLLAVIVAHALIGPFGRWIGDGVGFAAKAAMTGSFAPIGAALFGFLYAPLVITGIHH 324
Cdd:TIGR00852 79 LHERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPVGISALLHWLYSAGGALGGAIFGFLYRLLVPTGLHH 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 325 TTNAVDLQLMQS---MGGTPIWPLIALSNIAQASAVVGIILISRKENEREISVPAAISAYLGVTEPAMYGINLKYKFPML 401
Cdd:TIGR00852 159 IFYAIFIQLIAGgtvIGGGQVIPGDALANMAQGGAALAVFFTAGDAKFKSIGLPAAFSAGLGITEPAMYGVALRERRPFV 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 743522435 402 CAMVGSSCAALICGFAGVMANGIGVGGLPGILSIQP---QYWGIYAIAMLV 449
Cdd:TIGR00852 239 AGLIGSALLTAFLTGITEPLEFLFLFGAPGLYSIHAvlaGSIFTVAIGMGI 289
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
7-459 |
2.31e-53 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 189.54 E-value: 2.31e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 7 QHLAQ-LIERIGGKENITTVSHCLTRLRFVLADPAKADPKAIETIPSVKGSFTQGGQFQVVIGNEVDQWYKALTQEIGVS 85
Cdd:PRK09824 4 TELAReIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIGNHVADVFLAVNSVAGLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 86 GGSKEAAKQAARHNMnpLERGISHLAEIFVPLLPAIITGGLILGFR--NVIGDIKMFDDGTHTLteisqfwaqvhafLWL 163
Cdd:PRK09824 84 EKAQQAPENDKKGNL--LNRFIDVISGIFTPLIGVMAATGILKGMLalALTFGWTTEQSGTYKI-------------LFA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 164 LGEAIFHFLPVGVCWSAVKKMGGSEILGIVLGITLVSPQLMNAYGIGQQTPEVWDFGLFV-IQKVGYQAQVIPALLAGVF 242
Cdd:PRK09824 149 ASDALFFFFPIILGYTAGKKFGGNPFTAMVIGGALVHPLMIAAFEAGQKADALGLDFLGIpVTLLNYSSSVIPIIFSAWL 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 243 LAWVETSLKRIIPAYLYLVIVPFISLLLAVIVAHALIGPFGRWIGDGVgfAAKAAMTGSFAP-IGAALFGFLYAPLVITG 321
Cdd:PRK09824 229 CSILERRLNAWLPSAIKNFFTPLLCLMVIVPLTFLLIGPLATWLSELL--AAGYQWLYQAVPaFAGAVMGAFWQVFVIFG 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 322 IHHTTNAVDLQLMQSMGGTPIWPLIALSNIAQASAVVGIILISRKENEREISVPAAISAYLGVTEPAMYGINLKYKFPML 401
Cdd:PRK09824 307 LHWGLVPLMINNLTVLGHDTMLPLLMPAVMAQVGAALGVFLCTRDAQKKVVAGSAFLAGLFGITEPAVYGVNLPLKRPFI 386
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 743522435 402 CAMVGSSCAALICGFAGVMANGIGVGGLPGILSIQP------QYWGIYaIAMLVAIVVPALLTL 459
Cdd:PRK09824 387 FGCISGALGAAIIGYAQTKVYSFGLPSIFTFMQTIPptgidfTVWASV-IGTVIAIGCAFVGTV 449
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
1-461 |
5.43e-43 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 158.04 E-value: 5.43e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 1 MSKVNTQHLAQLIERIGGKENITTVSHCLTRLRFVLADPAKADPKAIETIPSVKGSFTQGGQFQVVIGNEVDQWYKALtq 80
Cdd:PRK09796 1 MAKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEV-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 81 eIGVSGGSKEAAKQAARHNMNPLERG---ISHLAEIFVPLLPAIITGGLILGFRNVIGDIKMFDDGTHTLTeisqfwaqv 157
Cdd:PRK09796 79 -VSLLPGDMQPAQPVGKPKLTLRRIGagiLDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLT--------- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 158 haFLWLLGEAIFHFLPVGVCWSAVKKMGGSEILGIVLGITLVSPQLMNAYGIGQQTPEVwDFGLFVIQKVGYQAQVIPAL 237
Cdd:PRK09796 149 --ILNVIGDGAFFFLPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHV-EFALIPVTAVKYTYTVIPAL 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 238 LAGVFLAWVETSLKRIIPAYLYLVIVPFISLLLAVIVAHALIGPFGRWIGDGVGfAAKAAMTGSFAPIGAALFGFLYAPL 317
Cdd:PRK09796 226 VMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAIS-ALVYTIHGYLGWLSVAIMGALWPLL 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 318 VITGIHHTTNAVDLQLMQSMGGTP-IWPLIALSNIAQASAVVGIILISRKENEREISVPAAISAYL-GVTEPAMYGINLK 395
Cdd:PRK09796 305 VMTGMHRVFTPTIIQTIAETGKEGmVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMaGISEPALYGVAIR 384
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 743522435 396 YKFPMLCAMVGSSCAALICGFAGVMANGIGVGGLpgILSIQ---PQ-----YWgIYAIaMLVAIVVPALLTLLV 461
Cdd:PRK09796 385 LKRPLIASLISGFICGAVAGMAGLASHSMAAPGL--FTSVQffdPAnpmsiVW-VFAV-MALAVVLSFILTLLL 454
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
1-460 |
2.48e-40 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 150.98 E-value: 2.48e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 1 MSKVNTQHLAQLIERIGGKENITTVSHCLTRLRFVLADPAKADPKAIETIPSVKGSFTQGGQFQVVIG-NEVDQWYKALT 79
Cdd:PRK09586 1 MAKISSELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGpGKAQRAAKAMN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 80 QEIGVSGGSKEAAKQAARHNMNPL--------ERGISHLAEIFVPLLPAIITGGLILGFRNVIGDIKMFDDGThtlteiS 151
Cdd:PRK09586 81 ELLGEAAAPVQDLAEIAAQNKRQLkakqtsgvQQFLAKFATIFTPLIPGFIAAGLLLGIATLIEQVMHVPADA------Q 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 152 QFWAQVHAFLWLLGEAIFHFLPVGVCWSAVKKMGGSEILGIVLGITLV---SPQLMNAYGIGQQtpevwDFGLFVIQKVG 228
Cdd:PRK09586 155 GTLPDALNYMKVFSKGLFTFLSILIGYNAQQAFGGTGVNGAIIASLFLlgyNPAATTGYYAGFH-----DFFGLPIDPRG 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 229 yqaQVIPALLAGVFLAWVETSLKRIIPAYLYLVIVPFISLLLAVIVAHALIGPFGRWIGDGvgfaakaaMTGSFA----- 303
Cdd:PRK09586 230 ---NIIGVLIAAIAGARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPLGGWLFEG--------MSWLFMhlnsn 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 304 PIGAALFGFLYAPLVITGIHHTTNAVDLQLMQSMGGTPIWPLIALSNIAQASAVVGIILISRKENEREISVPAAI-SAYL 382
Cdd:PRK09586 299 PFGCAVLAGLFLIAVVFGVHQGFIPVYFALMDSQGFNSLFPILAMAGAGQVGAALALYWRAQKHSALRTQVKGAIiPGLL 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 383 GVTEPAMYGINLKYKFPMLCAMVGSSCAALICGFAGVManGIGVG-----------GLPGILSIQPQYWG--IYAIAMLV 449
Cdd:PRK09586 379 GVGEPLIYGVTLPRMKPFVTACLGGAAGGFFIGLIAWL--GLPVGlnsvfgpsglvALPLMTSAQGILPGmaVYAGGLLV 456
|
490
....*....|.
gi 743522435 450 AIVVPALLTLL 460
Cdd:PRK09586 457 AYVCGFIFTTL 467
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
10-83 |
8.68e-26 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 99.92 E-value: 8.68e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 743522435 10 AQLIERIGGKENITTVSHCLTRLRFVLADPAKADPKAIETIPSVKGSFTQGGQFQVVIGNEVDQWYKALTQEIG 83
Cdd:cd00212 5 KDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEAIKLLG 78
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
6-82 |
1.97e-25 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 99.04 E-value: 1.97e-25
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 743522435 6 TQHLAQLIERIGGKENITTVSHCLTRLRFVLADPAKADPKAIETIpSVKGSFTQGGQFQVVIGNEVDQWYKALTQEI 82
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKL-GVKGVVKNGGQVQVIIGPGVDKVADEIEKLL 76
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
112-401 |
1.24e-22 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 98.19 E-value: 1.24e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 112 EIFVPLLPAIITGGLILGFRNVIGDIKMFDDGthtlteISQFWAQVHAFLWLLGEAIFHFLPVGVCWSAVKKMGGSE-IL 190
Cdd:pfam02378 2 DGFMPPIPLLIAGGILLGLGNLPNDTTGLPAG------GFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGGDgVA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 191 GIVLGITLVSPQLMNAYGIG---QQTPEVWDFGLFVIQKVGYQAQVIPALLAGVFLAWVETSLKRIIPAYLYLVIVPFIS 267
Cdd:pfam02378 76 GAAGLIGLLSFNLAAAISVAltaAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFV 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 268 LLLAVIVAHALIGPFGRWIGDGVGFAAKAA---MTGSFAPIGAALFGFLYAPLVITGIHHTTNAVDLQL-----MQSMGG 339
Cdd:pfam02378 156 PIITGFVTLLVIGPVLGLIWPAIQGGLNALgllLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLpiggsNPIANQ 235
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 743522435 340 TPIWP----------LIALSNIAQASAVVGII-LISRKENEREISVPAAISAYLGVTEPAMYGINLKYKFPML 401
Cdd:pfam02378 236 QAYGAgaahiltggfDVMFGGPGATLALYAAAfLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFF 308
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
30-111 |
4.47e-19 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 81.64 E-value: 4.47e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 30 TRLRFVLADPAKADPKAIETIPSVKGSFTQGGQFQVVIGNE-VDQWYKALTQE-IGVSGGSK---EAAKQAARHNMNPLE 104
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGVFTAAGQIQALGGTGnVNKVDACITRLrVGVADVSKvddAVLKKLGAHGVNPLQ 80
|
....*..
gi 743522435 105 RGISHLA 111
Cdd:TIGR00826 81 RAVQVIS 87
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
11-78 |
7.36e-12 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 66.59 E-value: 7.36e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 743522435 11 QLIERIGGKENITTVSHCLTRLRFVLADPAKADPKAIETIPSVKGSFTQGGQFQVVIG----NEVDQWYKAL 78
Cdd:PRK14905 280 QLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSIANQYQIILGagivEKIHEEMKAL 351
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
10-41 |
1.46e-11 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 58.53 E-value: 1.46e-11
10 20 30
....*....|....*....|....*....|..
gi 743522435 10 AQLIERIGGKENITTVSHCLTRLRFVLADPAK 41
Cdd:pfam00367 1 KEILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
10-92 |
3.69e-04 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 41.24 E-value: 3.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 10 AQLIERIGGKENITTVSHCLTRLRFVLADPAKADPKAIETIPSVKGSFTQGGQFQVVIGNEVDQWYKALTQEIGVSGGSK 89
Cdd:PRK09702 74 AGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLINSHQSAE 153
|
...
gi 743522435 90 EAA 92
Cdd:PRK09702 154 NVA 156
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
12-68 |
4.68e-04 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 39.26 E-value: 4.68e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 743522435 12 LIERIGGKENITTVSHCLTRLRFVLADPAKADPKAIETIPSvKGSFTQGGQFQVVIG 68
Cdd:TIGR00826 33 QIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLGA-HGVNPLQRAVQVISG 88
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
2-72 |
7.35e-04 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 42.01 E-value: 7.35e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 743522435 2 SKVNTQHLAQLIERIGGKENITTVSHCLTRLRFVLADPAKADPKAIETIpSVKGSFTQGGQFQVVIGNEVD 72
Cdd:PRK11089 395 ATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKL-GAAGVVVAGSGVQAIFGTKSD 464
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
12-71 |
1.76e-03 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 40.87 E-value: 1.76e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522435 12 LIERIGGKENITTVSHCLTRLRFVLADPAKADPKAIETIPSVKGSFTQGGQFQVVIGNEV 71
Cdd:PRK10110 455 ILEALGGADNIVSLDNCITRLRLSVKDMSLVDVQALKDNRAIGVVQLNQHNLQVVIGPQV 514
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