|
Name |
Accession |
Description |
Interval |
E-value |
| PRK08006 |
PRK08006 |
replicative DNA helicase DnaB; |
9-463 |
0e+00 |
|
replicative DNA helicase DnaB;
Pssm-ID: 181193 [Multi-domain] Cd Length: 471 Bit Score: 790.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 9 KDAKTQQLKVPPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSEQ 88
Cdd:PRK08006 17 RDPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 89 LEEAGGFAYLVEIAKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEPQGRTSNDLLDLAESKVFQIAEQRTSAN 168
Cdd:PRK08006 97 LDSVGGFAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIADAGYDPQGRTSEDLLDLAESRVFQIAESRANKD 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 169 EGPQPLKLILEQTVDKIEELFKTPHNGVTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTADKPV 248
Cdd:PRK08006 177 EGPKNIADILDATVARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPV 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 249 LIFSLEMPSEQIIMRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLLEKGKMYIDDSSGLTPTEVRSRARRVARDNGG 328
Cdd:PRK08006 257 LIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGG 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 329 ISMIMVDYLQLMRVPALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIM 408
Cdd:PRK08006 337 LSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIM 416
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 743522772 409 FIYRDEVYHDDSPDKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNYAGPAFDDD 463
Cdd:PRK08006 417 FIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE 471
|
|
| DnaB |
TIGR00665 |
replicative DNA helicase; This model describes the helicase DnaB, a homohexameric protein ... |
19-456 |
0e+00 |
|
replicative DNA helicase; This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273206 [Multi-domain] Cd Length: 432 Bit Score: 724.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 19 PPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSEQLEEAGGFAYL 98
Cdd:TIGR00665 1 PPHNIEAEQAVLGAILLDNEAIDDVAEILKPEDFYRPAHRLIFQAILDLYEKGEPIDLVTVAEELEKDGELEEVGGLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 99 VEIAKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEPQGrTSNDLLDLAESKVFQIAEQRTsaNEGPQPLKLIL 178
Cdd:TIGR00665 81 AELASNVPSAANIEYYAEIVKEKAILRRLIQAGTEIVELAYDPTG-DVEELLDEAEQKIFEIAESRT--SKGFKSIKEIL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 179 EQTVDKIEELFKTPhNGVTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTADKPVLIFSLEMPSE 258
Cdd:TIGR00665 158 KEAVEEIEELYERK-GGITGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAE 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 259 QIIMRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLLEKgKMYIDDSSGLTPTEVRSRARRVARDNGgISMIMVDYLQ 338
Cdd:TIGR00665 237 QLVMRMLSSESRVDSQKLRTGRLSDEDWEKLTEAAGELSEA-PLYIDDTPGLTITELRAKARRLKREHG-LGLIVIDYLQ 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 339 LMRVPALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHD 418
Cdd:TIGR00665 315 LMSGSGRSENRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEYYNP 394
|
410 420 430
....*....|....*....|....*....|....*...
gi 743522772 419 DSPDKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNYA 456
Cdd:TIGR00665 395 DSEDKGIAEIIIAKQRNGPTGTVKLAFLGEYTRFENLA 432
|
|
| DnaB |
COG0305 |
Replicative DNA helicase [Replication, recombination and repair]; |
22-456 |
0e+00 |
|
Replicative DNA helicase [Replication, recombination and repair];
Pssm-ID: 440074 [Multi-domain] Cd Length: 429 Bit Score: 695.67 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 22 SFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSEQLEEAGGFAYLVEI 101
Cdd:COG0305 1 NIEAEQAVLGALLLDNDALDEVADILKPEDFYRPAHRLIFEAILDLYERGEPIDLVTVAEELEKRGELEEVGGAAYLAEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 102 AKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEPQgRTSNDLLDLAESKVFQIAEQRTSanEGPQPLKLILEQT 181
Cdd:COG0305 81 AENVPSAANIEYYARIVKEKALLRRLIEAGTEIVELAYDED-EDVDELLDEAEQKIFEIAEKRSS--KGFVSISDILKEA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 182 VDKIEELFKTPhNGVTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTADKPVLIFSLEMPSEQII 261
Cdd:COG0305 158 LERIEELYKNG-GGITGVPTGFTDLDKLTGGLQPGDLIILAARPSMGKTAFALNIARNAAIKEGKPVAIFSLEMSAEQLV 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 262 MRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLLEKgKMYIDDSSGLTPTEVRSRARRVARDNGgISMIMVDYLQLMR 341
Cdd:COG0305 237 MRLLSSEARIDSSKLRTGKLSDEDWERLSSAAGELSEA-PIYIDDTPGLTIAEIRAKARRLKREHG-LGLIVIDYLQLMS 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 342 VPALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHDDSP 421
Cdd:COG0305 315 GSGRSENRQQEISEISRSLKALAKELNVPVIALSQLSRAVEQRTDKRPQLSDLRESGSIEQDADVVMFLYRDEYYNPDSE 394
|
410 420 430
....*....|....*....|....*....|....*
gi 743522772 422 DKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNYA 456
Cdd:COG0305 395 DKGIAEIIIAKQRNGPTGTVKLAFDGEYTRFENLA 429
|
|
| dnaB_SPI-7_type |
NF040583 |
SPI-7-type island replicative DNA helicase; Members of this family are DnaB-PI, a ... |
19-455 |
0e+00 |
|
SPI-7-type island replicative DNA helicase; Members of this family are DnaB-PI, a pathogenicity island (PI) variant of the replicative DNA helicase DnaB. Members are found with other conjugative element replication proteins such as ParA, ParB in genetic islands whose core proteins (but not cargo proteins) are shared with the Salmonella typhi SPI-7 island.
Pssm-ID: 468557 [Multi-domain] Cd Length: 434 Bit Score: 616.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 19 PPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSEQLEEAGGFAYL 98
Cdd:NF040583 1 GPYSVEAEQSVLGGLMLDNDRWDDVALLLAADDFYSRAHRIIFRAMARLVSAGQPIDLITLSESLEQQGQLEQVGGFAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 99 VEIAKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEPQGRTSnDLLDLAESKVFQIAEQRTSAnegpQPLKLI- 177
Cdd:NF040583 81 AELSKNTPSAANIVAYAEIVAEYSRARQLLALGHDLSADASAPRADIA-DLLEQAEQRLFDIAEQAEPQ----QEVTLIe 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 178 -LEQTVDKIEELFKTPhNGVTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTA-DKPVLIFSLEM 255
Cdd:NF040583 156 gLETLVSELELRCQSG-NGITGTPTGFAELDEMTCGLQPGDLILLAARPSMGKTALALAFCLGALRGKpDKVVQIYSLEM 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 256 PSEQIIMRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLLE-KGKMYIDDSSGLTPTEVRSRARRVARDNGGISMIMV 334
Cdd:NF040583 235 PTEQLLMRLVSMLGRVPLQRLRSGLLDDEDWARISQAMALLTDwKDRLIIDDTSYLTPALLRARARRNARKYGKPSLIMV 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 335 DYLQLMRVPAlSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDE 414
Cdd:NF040583 315 DYLQLMRCPG-QENRTQEIAEISRSLKALAKEMGCPVLALSQLNRQLESRADKRPNNGDLRDSGALEQDADLIMFIYRDE 393
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 743522772 415 VYHDDSPDKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNY 455
Cdd:NF040583 394 VYNPNTPDKGIAEIIIGKQRQGPTGTVKVQFDGRYTRFSDL 434
|
|
| DnaB_C |
pfam03796 |
DnaB-like helicase C terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at ... |
198-454 |
3.92e-153 |
|
DnaB-like helicase C terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Pssm-ID: 427509 [Multi-domain] Cd Length: 254 Bit Score: 434.92 E-value: 3.92e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 198 GVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTADKPVLIFSLEMPSEQIIMRMLASVGRIDQTKVR 277
Cdd:pfam03796 1 GLPTGFTDLDRLTGGLQPGDLIIIAARPSMGKTAFALNIARNAAVKHKKPVAIFSLEMSAEQLVMRLLASEAGVDSQKLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 278 TGQLDDEDWARLSSTMGLLLEKgKMYIDDSSGLTPTEVRSRARRVARDnGGISMIMVDYLQLMRVPALSDNRTLEIGEIS 357
Cdd:pfam03796 81 TGQLTDEDWEKLAKAAGRLSEA-PLYIDDTPGLSIAEIRAKARRLKRE-HGLGLIVIDYLQLMSGGSRGENRQQEISEIS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 358 RSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHDDSPdKGIAEIIIGKQRNGP 437
Cdd:pfam03796 159 RSLKALAKELNVPVIALSQLSRAVEQRTDKRPQLSDLRESGAIEQDADVVMFLYRDEYYNPKEP-EGKAEIIIAKQRNGP 237
|
250
....*....|....*..
gi 743522772 438 IGRVRLTFQGQFSRFDN 454
Cdd:pfam03796 238 TGTVKLAFLGEYTRFEN 254
|
|
| DnaB_C |
cd00984 |
C-terminal domain of DnaB helicase; DnaB helicase C-terminal domain. The hexameric helicase ... |
198-454 |
1.51e-145 |
|
C-terminal domain of DnaB helicase; DnaB helicase C-terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Pssm-ID: 410864 [Multi-domain] Cd Length: 256 Bit Score: 415.76 E-value: 1.51e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 198 GVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTADKPVLIFSLEMPSEQIIMRMLASVGRIDQTKVR 277
Cdd:cd00984 1 GLPTGFTDLDKLTGGLQPGDLIIIAARPSMGKTAFALNIAENIALDEGLPVLFFSLEMSAEQLAERLLSSESGVSLSKLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 278 TGQLDDEDWARLSSTMGLLLEKgKMYIDDSSGLTPTEVRSRARRVARDNGGISMIMVDYLQLMRVPALSDNRTLEIGEIS 357
Cdd:cd00984 81 TGRLDDEDWERLTAAMGELSEL-PLYIDDTPGLTVDEIRAKARRLKREHGGLGLIVIDYLQLIRGSKRAENRQQEVAEIS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 358 RSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHDDSPDKGIAEIIIGKQRNGP 437
Cdd:cd00984 160 RSLKALAKELNVPVIALSQLNRGVESRTDKRPMLSDLRESGSIEQDADVVIFLYRDEYYDKDSEDKGIAEIIIAKNRNGP 239
|
250
....*....|....*..
gi 743522772 438 IGRVRLTFQGQFSRFDN 454
Cdd:cd00984 240 TGTVYLAFNPEYTRFTD 256
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK08006 |
PRK08006 |
replicative DNA helicase DnaB; |
9-463 |
0e+00 |
|
replicative DNA helicase DnaB;
Pssm-ID: 181193 [Multi-domain] Cd Length: 471 Bit Score: 790.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 9 KDAKTQQLKVPPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSEQ 88
Cdd:PRK08006 17 RDPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 89 LEEAGGFAYLVEIAKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEPQGRTSNDLLDLAESKVFQIAEQRTSAN 168
Cdd:PRK08006 97 LDSVGGFAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIADAGYDPQGRTSEDLLDLAESRVFQIAESRANKD 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 169 EGPQPLKLILEQTVDKIEELFKTPHNGVTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTADKPV 248
Cdd:PRK08006 177 EGPKNIADILDATVARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPV 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 249 LIFSLEMPSEQIIMRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLLEKGKMYIDDSSGLTPTEVRSRARRVARDNGG 328
Cdd:PRK08006 257 LIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGG 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 329 ISMIMVDYLQLMRVPALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIM 408
Cdd:PRK08006 337 LSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIM 416
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 743522772 409 FIYRDEVYHDDSPDKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNYAGPAFDDD 463
Cdd:PRK08006 417 FIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE 471
|
|
| PRK08840 |
PRK08840 |
replicative DNA helicase; Provisional |
8-463 |
0e+00 |
|
replicative DNA helicase; Provisional
Pssm-ID: 181562 [Multi-domain] Cd Length: 464 Bit Score: 789.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 8 KKDAKTQQLKVPPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSE 87
Cdd:PRK08840 9 IPDAQVDAIKVPPHSLEAEQSVIGGLLLDNERWDTVAEKVVASDFYSRPHRLIFEGVKSILEAGKPLDLITLSEHLERRE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 88 QLEEAGGFAYLVEIAKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEPQGRTSNDLLDLAESKVFQIAEQRTSA 167
Cdd:PRK08840 89 QLEDVGGFAYLADLAKNTPSAANINAYADIVAERALVRNLIGVANEIADAGYDPQGRTSEDLLDMAESKVFAIAEARTSE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 168 NEGPQPLKLILEQTVDKIEELFKTPHNGVTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTADKP 247
Cdd:PRK08840 169 NEGPQNVDSILEKTLERIELLYKTPQDGVTGVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKP 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 248 VLIFSLEMPSEQIIMRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLLEKGKMYIDDSSGLTPTEVRSRARRVARDNG 327
Cdd:PRK08840 249 VLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHG 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 328 GISMIMVDYLQLMRVPALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLI 407
Cdd:PRK08840 329 GLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLI 408
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 743522772 408 MFIYRDEVYHDDSPDKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNYAGPAFDDD 463
Cdd:PRK08840 409 MFIYRDEVYNPDSPLKGTAEIIIGKQRNGPIGSVRLTFQGQYSRFDNYAGPAFDDE 464
|
|
| DnaB |
TIGR00665 |
replicative DNA helicase; This model describes the helicase DnaB, a homohexameric protein ... |
19-456 |
0e+00 |
|
replicative DNA helicase; This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273206 [Multi-domain] Cd Length: 432 Bit Score: 724.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 19 PPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSEQLEEAGGFAYL 98
Cdd:TIGR00665 1 PPHNIEAEQAVLGAILLDNEAIDDVAEILKPEDFYRPAHRLIFQAILDLYEKGEPIDLVTVAEELEKDGELEEVGGLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 99 VEIAKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEPQGrTSNDLLDLAESKVFQIAEQRTsaNEGPQPLKLIL 178
Cdd:TIGR00665 81 AELASNVPSAANIEYYAEIVKEKAILRRLIQAGTEIVELAYDPTG-DVEELLDEAEQKIFEIAESRT--SKGFKSIKEIL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 179 EQTVDKIEELFKTPhNGVTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTADKPVLIFSLEMPSE 258
Cdd:TIGR00665 158 KEAVEEIEELYERK-GGITGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAE 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 259 QIIMRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLLEKgKMYIDDSSGLTPTEVRSRARRVARDNGgISMIMVDYLQ 338
Cdd:TIGR00665 237 QLVMRMLSSESRVDSQKLRTGRLSDEDWEKLTEAAGELSEA-PLYIDDTPGLTITELRAKARRLKREHG-LGLIVIDYLQ 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 339 LMRVPALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHD 418
Cdd:TIGR00665 315 LMSGSGRSENRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEYYNP 394
|
410 420 430
....*....|....*....|....*....|....*...
gi 743522772 419 DSPDKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNYA 456
Cdd:TIGR00665 395 DSEDKGIAEIIIAKQRNGPTGTVKLAFLGEYTRFENLA 432
|
|
| PRK06904 |
PRK06904 |
replicative DNA helicase; Validated |
1-464 |
0e+00 |
|
replicative DNA helicase; Validated
Pssm-ID: 136106 [Multi-domain] Cd Length: 472 Bit Score: 707.14 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 1 MAEQVTAK-KDAKTQQLKVPPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITL 79
Cdd:PRK06904 4 TGSQQSARiKDKKTAQVLIPPHSIEAEQAVLGGIMLDNRHWDSVAERVIADDFYTFEHRIIFQEMELLFRQNTPIDLLTL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 80 QEELERSEQLEEAGGFAYLVEIAKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEPQGRTSNDLLDLAESKVFQ 159
Cdd:PRK06904 84 DQALKTKGKSDEVGGFAYLAELSNNTPSAANILAYADIVREKAILRELISVGNNIAKNAYSPKGQDIKDILDEAERDVFS 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 160 IAEQRTSANEGPQPLKLILEQTVDKIEELFKTP-HNGVTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCE 238
Cdd:PRK06904 164 IAEKRTTANEGPQNVINLLENTIDKIENLAATPtNNGVTGVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 239 HAALTADKPVLIFSLEMPSEQIIMRMLASVGRIDQTKVRTGQ-LDDEDWARLSSTMGLLLEKGKMYIDDSSGLTPTEVRS 317
Cdd:PRK06904 244 NAAMASEKPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQnLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRS 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 318 RARRVARDNGGISMIMVDYLQLMRVPALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRES 397
Cdd:PRK06904 324 RARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRES 403
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 743522772 398 GSIEQDADLIMFIYRDEVYHDDSPD-KGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNYAG-PAFDDDY 464
Cdd:PRK06904 404 GSIEQDADLIMFIYRDEVYNETTEDnKGVAEIIIGKQRNGPIGRVRLAFQGQYSRFDNLANiPQYYDKY 472
|
|
| DnaB |
COG0305 |
Replicative DNA helicase [Replication, recombination and repair]; |
22-456 |
0e+00 |
|
Replicative DNA helicase [Replication, recombination and repair];
Pssm-ID: 440074 [Multi-domain] Cd Length: 429 Bit Score: 695.67 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 22 SFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSEQLEEAGGFAYLVEI 101
Cdd:COG0305 1 NIEAEQAVLGALLLDNDALDEVADILKPEDFYRPAHRLIFEAILDLYERGEPIDLVTVAEELEKRGELEEVGGAAYLAEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 102 AKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEPQgRTSNDLLDLAESKVFQIAEQRTSanEGPQPLKLILEQT 181
Cdd:COG0305 81 AENVPSAANIEYYARIVKEKALLRRLIEAGTEIVELAYDED-EDVDELLDEAEQKIFEIAEKRSS--KGFVSISDILKEA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 182 VDKIEELFKTPhNGVTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTADKPVLIFSLEMPSEQII 261
Cdd:COG0305 158 LERIEELYKNG-GGITGVPTGFTDLDKLTGGLQPGDLIILAARPSMGKTAFALNIARNAAIKEGKPVAIFSLEMSAEQLV 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 262 MRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLLEKgKMYIDDSSGLTPTEVRSRARRVARDNGgISMIMVDYLQLMR 341
Cdd:COG0305 237 MRLLSSEARIDSSKLRTGKLSDEDWERLSSAAGELSEA-PIYIDDTPGLTIAEIRAKARRLKREHG-LGLIVIDYLQLMS 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 342 VPALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHDDSP 421
Cdd:COG0305 315 GSGRSENRQQEISEISRSLKALAKELNVPVIALSQLSRAVEQRTDKRPQLSDLRESGSIEQDADVVMFLYRDEYYNPDSE 394
|
410 420 430
....*....|....*....|....*....|....*
gi 743522772 422 DKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNYA 456
Cdd:COG0305 395 DKGIAEIIIAKQRNGPTGTVKLAFDGEYTRFENLA 429
|
|
| PRK05748 |
PRK05748 |
replicative DNA helicase; Provisional |
10-456 |
0e+00 |
|
replicative DNA helicase; Provisional
Pssm-ID: 180232 [Multi-domain] Cd Length: 448 Bit Score: 687.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 10 DAKTQQLKVPPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSEQL 89
Cdd:PRK05748 1 MSEVAALRVPPQSIEAEQAVLGAIFLDPDALITVSEYLSPDDFYRHAHRLIFRAMLKLSDRGEPIDVVTVTEILDDQGDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 90 EEAGGFAYLVEIAKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEPQGrTSNDLLDLAESKVFQIAEQRTSAne 169
Cdd:PRK05748 81 EEVGGLSYLAELANSVPTAANIEYYAKIVAEKAMLRRLIRTATEIANDAYEPED-DADEILDEAEKKIFEVSERRNKS-- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 170 GPQPLKLILEQTVDKIEELFKTpHNGVTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTADKPVL 249
Cdd:PRK05748 158 GFKNIKDVLVKAYDRIEMLHNQ-TGDITGIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 250 IFSLEMPSEQIIMRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLLEKGkMYIDDSSGLTPTEVRSRARRVARDNGGI 329
Cdd:PRK05748 237 IFSLEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAMGSLSDAP-IYIDDTPGIKVTEIRARCRRLAQEHGGL 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 330 SMIMVDYLQLMRVPALS-DNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIM 408
Cdd:PRK05748 316 GLILIDYLQLIQGSGRSgENRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVA 395
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 743522772 409 FIYRDEVYHDDSPDKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNYA 456
Cdd:PRK05748 396 FLYRDDYYDEETENKNTIEIIIAKQRNGPVGTVELAFQKEYNKFVNLA 443
|
|
| dnaB_SPI-7_type |
NF040583 |
SPI-7-type island replicative DNA helicase; Members of this family are DnaB-PI, a ... |
19-455 |
0e+00 |
|
SPI-7-type island replicative DNA helicase; Members of this family are DnaB-PI, a pathogenicity island (PI) variant of the replicative DNA helicase DnaB. Members are found with other conjugative element replication proteins such as ParA, ParB in genetic islands whose core proteins (but not cargo proteins) are shared with the Salmonella typhi SPI-7 island.
Pssm-ID: 468557 [Multi-domain] Cd Length: 434 Bit Score: 616.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 19 PPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSEQLEEAGGFAYL 98
Cdd:NF040583 1 GPYSVEAEQSVLGGLMLDNDRWDDVALLLAADDFYSRAHRIIFRAMARLVSAGQPIDLITLSESLEQQGQLEQVGGFAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 99 VEIAKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEPQGRTSnDLLDLAESKVFQIAEQRTSAnegpQPLKLI- 177
Cdd:NF040583 81 AELSKNTPSAANIVAYAEIVAEYSRARQLLALGHDLSADASAPRADIA-DLLEQAEQRLFDIAEQAEPQ----QEVTLIe 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 178 -LEQTVDKIEELFKTPhNGVTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTA-DKPVLIFSLEM 255
Cdd:NF040583 156 gLETLVSELELRCQSG-NGITGTPTGFAELDEMTCGLQPGDLILLAARPSMGKTALALAFCLGALRGKpDKVVQIYSLEM 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 256 PSEQIIMRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLLE-KGKMYIDDSSGLTPTEVRSRARRVARDNGGISMIMV 334
Cdd:NF040583 235 PTEQLLMRLVSMLGRVPLQRLRSGLLDDEDWARISQAMALLTDwKDRLIIDDTSYLTPALLRARARRNARKYGKPSLIMV 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 335 DYLQLMRVPAlSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDE 414
Cdd:NF040583 315 DYLQLMRCPG-QENRTQEIAEISRSLKALAKEMGCPVLALSQLNRQLESRADKRPNNGDLRDSGALEQDADLIMFIYRDE 393
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 743522772 415 VYHDDSPDKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNY 455
Cdd:NF040583 394 VYNPNTPDKGIAEIIIGKQRQGPTGTVKVQFDGRYTRFSDL 434
|
|
| PRK07004 |
PRK07004 |
replicative DNA helicase; Provisional |
7-463 |
0e+00 |
|
replicative DNA helicase; Provisional
Pssm-ID: 235907 [Multi-domain] Cd Length: 460 Bit Score: 574.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 7 AKKDAKTQQLKVPPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERS 86
Cdd:PRK07004 3 APADPQLESLKVPPHSIEAEQSVLGGLLLDNAAWDRIADFLSQSDFYRYDHRIIFEHIGRLIAATRPADVITVYEALTTS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 87 EQLEEAGGFAYLVEIAKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEPQGRTSNDLLDLAESKVFQIAEQRTS 166
Cdd:PRK07004 83 GKAEEVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSVADEISADAFNPQGKEVRQLLDEAESKVFSIAEEGAR 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 167 ANEGPQPLKLILEQTVDKIEELFKTPHNG-VTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTAD 245
Cdd:PRK07004 163 GTQGFLEIGPLLTQVVERIDTLYHTANPSdVTGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 246 KPVLIFSLEMPSEQIIMRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLlEKGKMYIDDSSGLTPTEVRSRARRVARD 325
Cdd:PRK07004 243 LPVAVFSMEMPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAVQKM-SEAQLFIDETGGLNPMELRSRARRLARQ 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 326 NGGISMIMVDYLQLMRVPALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDAD 405
Cdd:PRK07004 322 CGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDAD 401
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 743522772 406 LIMFIYRDEVYHDDSPDKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNYAG-PAFDDD 463
Cdd:PRK07004 402 VILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGPVRLTFLGQYTKFDNFAGaQNFYGE 460
|
|
| PRK08760 |
PRK08760 |
replicative DNA helicase; Provisional |
8-461 |
0e+00 |
|
replicative DNA helicase; Provisional
Pssm-ID: 181547 [Multi-domain] Cd Length: 476 Bit Score: 517.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 8 KKDAKTQQLKVPPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSE 87
Cdd:PRK08760 22 RPEPRLDQLRVPPHSVEAEQAVLGGLMLAPDALDRVNDQLTENDFYRRDHRLIYRAIRELSEKDRPFDAVTLGEWFESQG 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 88 QLEEAGGFAYLVEIAKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEPQGRTSNDLLDLAESKVFQIAEQ---- 163
Cdd:PRK08760 102 KLEQVGDGAYLIELASTTPSAANIAAYAEIVRDKAVLRQLIEVGTTIVNDGFQPEGRESIELLASAEKAVFKIAEAgarg 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 164 RTSANEGPQPLKLILEQTVDKIEelfktphNG--VTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAA 241
Cdd:PRK08760 182 RTDFVAMPGALKDAFEELRNRFE-------NGgnITGLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAA 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 242 LTADKPVLIFSLEMPSEQIIMRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLLEKgKMYIDDSSGLTPtEVRSRARR 321
Cdd:PRK08760 255 IKSKKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKMLKET-KIFIDDTPGVSP-EVLRSKCR 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 322 VARDNGGISMIMVDYLQLMRVPALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIE 401
Cdd:PRK08760 333 RLKREHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIE 412
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 743522772 402 QDADLIMFIYRDEVYH-DDSPDKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNYAGPAFD 461
Cdd:PRK08760 413 QDADMIVFIYRDDYYNkENSPDKGLAEIIIGKHRGGPTGSCKLKFFGEYTRFDNLAHDSVG 473
|
|
| PRK05595 |
PRK05595 |
replicative DNA helicase; Provisional |
15-455 |
3.02e-161 |
|
replicative DNA helicase; Provisional
Pssm-ID: 235525 [Multi-domain] Cd Length: 444 Bit Score: 463.15 E-value: 3.02e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 15 QLKVPPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSEQLEEAGG 94
Cdd:PRK05595 4 PIRSLPQSIEAEQSVLGAMIIDKTSIAEAAEVLKSEDFYRDSHKVIFSAIIELYQKDIAVDMLTLTENLKSTDKLEAAGG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 95 FAYLVEIAKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEPQGRTSNdLLDLAESKVFQIAEQRTSANEgpQPL 174
Cdd:PRK05595 84 VTYITELSNSIVSTANIQSYIKIVKDKSTLRRLIKSSTEIIENSYNNQDDVEK-VIDSAEKKIFDISEKRTTSDF--EPL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 175 KLILEQTVDKIEELFKTpHNGVTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTADKPVLIFSLE 254
Cdd:PRK05595 161 SNVLERGFEQIENLFNN-KGETTGVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 255 MPSEQIIMRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLlEKGKMYIDDSSGLTPTEVRSRARRVARDNGgISMIMV 334
Cdd:PRK05595 240 MSKEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARASGPL-AAAKIFIDDTAGVSVMEMRSKCRRLKIEHG-IDMILI 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 335 DYLQLMRVPALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDE 414
Cdd:PRK05595 318 DYLQLMSGGKGSESRQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADVVMFLYRDE 397
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 743522772 415 VYHDDSPDKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNY 455
Cdd:PRK05595 398 YYNKETEDKNVAECIIAKQRNGPTGTVKLAWLGQYSKFGNL 438
|
|
| phage_DnaB |
TIGR03600 |
phage replicative helicase, DnaB family, HK022 subfamily; Members of this family are phage (or ... |
22-445 |
6.23e-159 |
|
phage replicative helicase, DnaB family, HK022 subfamily; Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 274672 [Multi-domain] Cd Length: 420 Bit Score: 456.09 E-value: 6.23e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 22 SFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSEQLEEAGGFAYLVEI 101
Cdd:TIGR03600 1 SIEAEQAVLGGLLLDNDFIERVMAILKPEHFYSQDHRIIFEAMLDMFAENRPVDPLTLADKLEAEGEAEKVGGLAYLAEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 102 AKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEPQGRTSNDLLDLAESKVFQIAeQRTSANEGPQPLKLILEQT 181
Cdd:TIGR03600 81 SNNTPSAANISSYARIVREKAKERKLIAACQRIITLACSPDGGTAEQKVEEAQAALLALT-MSDGQEDGFVTFGEVLEDV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 182 VDKIEELFKtPHNGVTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTADKPVLIFSLEMPSEQII 261
Cdd:TIGR03600 160 VRDLDKRFN-PKGELTGLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 262 MRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLLEKgKMYIDDSSGLTPTEVRSRARRVARDNGGISMIMVDYLQLMR 341
Cdd:TIGR03600 239 ERLLASKSGINTGNIRTGRFNDSEFNRLLNAVDRLSEK-DLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 342 vPALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHDDSP 421
Cdd:TIGR03600 318 -PARGRDRNEELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGYYDAREP 396
|
410 420
....*....|....*....|....
gi 743522772 422 DKGIAEIIIGKQRNGPIGRVRLTF 445
Cdd:TIGR03600 397 PAGIAELILAKNRHGPTGTVELLF 420
|
|
| DnaB_C |
pfam03796 |
DnaB-like helicase C terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at ... |
198-454 |
3.92e-153 |
|
DnaB-like helicase C terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Pssm-ID: 427509 [Multi-domain] Cd Length: 254 Bit Score: 434.92 E-value: 3.92e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 198 GVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTADKPVLIFSLEMPSEQIIMRMLASVGRIDQTKVR 277
Cdd:pfam03796 1 GLPTGFTDLDRLTGGLQPGDLIIIAARPSMGKTAFALNIARNAAVKHKKPVAIFSLEMSAEQLVMRLLASEAGVDSQKLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 278 TGQLDDEDWARLSSTMGLLLEKgKMYIDDSSGLTPTEVRSRARRVARDnGGISMIMVDYLQLMRVPALSDNRTLEIGEIS 357
Cdd:pfam03796 81 TGQLTDEDWEKLAKAAGRLSEA-PLYIDDTPGLSIAEIRAKARRLKRE-HGLGLIVIDYLQLMSGGSRGENRQQEISEIS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 358 RSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHDDSPdKGIAEIIIGKQRNGP 437
Cdd:pfam03796 159 RSLKALAKELNVPVIALSQLSRAVEQRTDKRPQLSDLRESGAIEQDADVVMFLYRDEYYNPKEP-EGKAEIIIAKQRNGP 237
|
250
....*....|....*..
gi 743522772 438 IGRVRLTFQGQFSRFDN 454
Cdd:pfam03796 238 TGTVKLAFLGEYTRFEN 254
|
|
| DnaB_C |
cd00984 |
C-terminal domain of DnaB helicase; DnaB helicase C-terminal domain. The hexameric helicase ... |
198-454 |
1.51e-145 |
|
C-terminal domain of DnaB helicase; DnaB helicase C-terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Pssm-ID: 410864 [Multi-domain] Cd Length: 256 Bit Score: 415.76 E-value: 1.51e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 198 GVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTADKPVLIFSLEMPSEQIIMRMLASVGRIDQTKVR 277
Cdd:cd00984 1 GLPTGFTDLDKLTGGLQPGDLIIIAARPSMGKTAFALNIAENIALDEGLPVLFFSLEMSAEQLAERLLSSESGVSLSKLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 278 TGQLDDEDWARLSSTMGLLLEKgKMYIDDSSGLTPTEVRSRARRVARDNGGISMIMVDYLQLMRVPALSDNRTLEIGEIS 357
Cdd:cd00984 81 TGRLDDEDWERLTAAMGELSEL-PLYIDDTPGLTVDEIRAKARRLKREHGGLGLIVIDYLQLIRGSKRAENRQQEVAEIS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 358 RSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHDDSPDKGIAEIIIGKQRNGP 437
Cdd:cd00984 160 RSLKALAKELNVPVIALSQLNRGVESRTDKRPMLSDLRESGSIEQDADVVIFLYRDEYYDKDSEDKGIAEIIIAKNRNGP 239
|
250
....*....|....*..
gi 743522772 438 IGRVRLTFQGQFSRFDN 454
Cdd:cd00984 240 TGTVYLAFNPEYTRFTD 256
|
|
| PRK09165 |
PRK09165 |
replicative DNA helicase; Provisional |
9-464 |
7.68e-139 |
|
replicative DNA helicase; Provisional
Pssm-ID: 181676 [Multi-domain] Cd Length: 497 Bit Score: 407.73 E-value: 7.68e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 9 KDAKTQQLKVPPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSEQ 88
Cdd:PRK09165 11 PDAAEPEIRELPHNIEAEQALLGAILINNRALDRVSDFLKPEHFFEPLHQRIYEAIAKIIRKGKLATPVTLKTFLENDEA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 89 LEEAGGFAYLVEIAKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYE-PQGRTSNDLLDLAESKVFQIAEQRTSa 167
Cdd:PRK09165 91 LGELGGVQYLAKLATEAVTIINARDYGRIIYDLALRRELINIGEDVVNNAYDaPVDVAPQEQIEDAEQKLYELAETGRY- 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 168 NEGPQPLKLILEQTVDKIEELFKTPhNGVTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAA------ 241
Cdd:PRK09165 170 EGGFQSFGTAITEAVDMANAAFKRD-GHLSGISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAkayrre 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 242 --------LTADKPVLIFSLEMPSEQIIMRMLASVGRIDQTKVRTGQLDDEDWARLSSTMgLLLEKGKMYIDDSSGLTPT 313
Cdd:PRK09165 249 aqpdgskkAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRGKISEEDFEKLVDAS-QELQKLPLYIDDTPALSIS 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 314 EVRSRARRVARDNGgISMIMVDYLQLMRVPAL--SDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVN 391
Cdd:PRK09165 328 QLRARARRLKRQHG-LDLLVVDYLQLIRGSSKrsSDNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQL 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 392 SDLRESGSIEQDADLIMFIYRDEVYH------DDSPD-----------KGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDN 454
Cdd:PRK09165 407 SDLRESGSIEQDADVVMFVYREEYYLkrkeprEGTPKheewqekmekvHNKAEVIIAKQRHGPTGTVKLAFESEFTRFGD 486
|
490
....*....|
gi 743522772 455 YAGPAFDDDY 464
Cdd:PRK09165 487 LADRSQLPEE 496
|
|
| PRK07773 |
PRK07773 |
replicative DNA helicase; Validated |
17-403 |
1.51e-136 |
|
replicative DNA helicase; Validated
Pssm-ID: 236093 [Multi-domain] Cd Length: 886 Bit Score: 414.53 E-value: 1.51e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 17 KVPPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSEQLEEAGGFA 96
Cdd:PRK07773 22 RQPPQDLAAEQSVLGGMLLSKEAIARVLERLRPGAFYRPAHQNIYDAILDLYGRGEPADLVTVAAELDRRGLLERIGGAP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 97 YLVEIAKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEPqGRTSNDLLDLAESKVFQIAEQRTSanEGPQPLKL 176
Cdd:PRK07773 102 YLHTLISTVPTAANADYYARIVAEKALLRRLIEAGTRIVQYGYAE-GADVAEVVDRAQAEIYDVTDRRLS--EDFVALED 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 177 ILEQTVDKIEELFKTPhNGVTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTADKPVLIFSLEMP 256
Cdd:PRK07773 179 LLQPTFDEIDAIASSG-GLARGVPTGFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMS 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 257 SEQIIMRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLLEkGKMYIDDSSGLTPTEVRSRARRVARDNgGISMIMVDY 336
Cdd:PRK07773 258 KEQLVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARAMGEISE-APIFIDDTPNLTVMEIRAKARRLRQEA-NLGLIVVDY 335
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 743522772 337 LQLMRVPALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQD 403
Cdd:PRK07773 336 LQLMTSGKKYENRQQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQRTDKRPMLSDLRESGCLTGD 402
|
|
| PRK08506 |
PRK08506 |
replicative DNA helicase; Provisional |
21-452 |
5.42e-132 |
|
replicative DNA helicase; Provisional
Pssm-ID: 236278 [Multi-domain] Cd Length: 472 Bit Score: 389.37 E-value: 5.42e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 21 HSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSEQLEEAggfaYLVE 100
Cdd:PRK08506 5 YDLDIERAVLSSILFSPDKFEEIASVLEPKDFYLPAHQDIFEAMLKLHNEDEPIDEEFIRKKLPKDKKIDEE----ILLE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 101 IAkNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEpQGRTSNDLLDLAESKVFQIAEQrtSANEGPQPLKLILEQ 180
Cdd:PRK08506 81 IL-ATNPIDNIEAYVEEIKEKSIKRELLSLANTIPEQAVE-EDQKSSDILDEVERELYSITNG--SNSEDFKDSKEVIES 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 181 TVDKIEELFKTPHNGVTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAaLTADKPVLIFSLEMPSEQI 260
Cdd:PRK08506 157 TMEHIKKQKRLGNKDIIGLDTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKA-LNQDKGVAFFSLEMPAEQL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 261 IMRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLLEKgKMYIDDSSGLTPTEVRSRARRVARDNGGISMIMVDYLQLM 340
Cdd:PRK08506 236 MLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACDELSKK-KLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLM 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 341 RVPALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHD-- 418
Cdd:PRK08506 315 SGSGNFKDRHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDDVYKEre 394
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 743522772 419 ------------------DSPDKGI--AEIIIGKQRNGPIGRVRLTFQGQFSRF 452
Cdd:PRK08506 395 ekekekkakkegkeerriHFQNKSIeeAEIIIGKNRNGPTGTVKLRFQKEFTRF 448
|
|
| PRK05636 |
PRK05636 |
replicative DNA helicase; Provisional |
13-456 |
1.89e-118 |
|
replicative DNA helicase; Provisional
Pssm-ID: 180177 [Multi-domain] Cd Length: 505 Bit Score: 356.07 E-value: 1.89e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 13 TQQLKVPPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSEQLEEA 92
Cdd:PRK05636 64 YRDFRQPPYDNEAEQGVLGAMLLSPDTVIDIVEVLTPEDFYRPAHQLIFQAIIDLFSDNKEIDPVIVAGRLDRTNDLERV 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 93 GGFAYLVEIAKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYE-PQGRTSNDLLDLAESKVFQIAEQRTSanEGP 171
Cdd:PRK05636 144 GGAPYLHTLIQSVPTAANARYYAEIVSEKAVLRRLVDAGTRVVQLGYEgDEGAEIDSVIDRAQQEVFAVSQKNQS--EDY 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 172 QPLKLILEQTVDKIEELfkTPHNGV-TGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTADKPVLI 250
Cdd:PRK05636 222 AVLADILDPTMDELEML--SSQGGIaTGIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVI 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 251 FSLEMPSEQIIMRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLlEKGKMYIDDSSGLTPTEVRSRARRVARDNGgIS 330
Cdd:PRK05636 300 FSLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRLGKI-AQAPIFIDDSANLTMMEIRSKARRLKQKHD-LK 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 331 MIMVDYLQLMRVPALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFI 410
Cdd:PRK05636 378 LIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLL 457
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 743522772 411 YRDEVYHDDSPDKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNYA 456
Cdd:PRK05636 458 YRPDSQDKDDERAGEADIILAKHRGGPIDTVQVAHQLHYSRFVDMA 503
|
|
| PRK06321 |
PRK06321 |
replicative DNA helicase; Provisional |
1-461 |
8.15e-110 |
|
replicative DNA helicase; Provisional
Pssm-ID: 180528 [Multi-domain] Cd Length: 472 Bit Score: 332.96 E-value: 8.15e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 1 MAEQVTAKKDAKtqqLKVPPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQ 80
Cdd:PRK06321 1 MATQTKKPQPTQ---LLSPPNSKESEMIVLGCMLTSVNYLNLAANQLQEDDFYFLEHKIIFRVLQDAFKSDKPIDVHLAG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 81 EELERSEQLEEAGGFAYLVEIAKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEpQGRTSNDLLDLAESKVFQI 160
Cdd:PRK06321 78 EELKRRNQLNVIGGPSYLITLAEFAGTSAYIEEYAEIIRSKSILRKMIQTAKEIEKKALE-EPKDVATALDEAQNLLFKI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 161 AEQRTSA-------------NEGPQPLKLILEQTVDKIEELFKTPHN-GVTGVSSGYNDLDKMTAGLQRSDLVIVAARPS 226
Cdd:PRK06321 157 SQTTNLAqyvlvadklkgltSSKDKPFLLQLQERQEAFQQSAQGDSSpMISGIPTHFIDLDKMINGFSPSNLMILAARPA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 227 MGKTTFAMNLCEHAALTADKPVLIFSLEMPSEQIIMRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLlEKGKMYIDD 306
Cdd:PRK06321 237 MGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIVSVVNEM-QEHTLLIDD 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 307 SSGLTPTEVRSRARRVArDNGGISMIMVDYLQLMRVPAL---SDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQ 383
Cdd:PRK06321 316 QPGLKITDLRARARRMK-ESYDIQFLIIDYLQLLSGSGNlrnSESRQTEISEISRMLKNLARELNIPILCLSQLSRKVED 394
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 743522772 384 RADKRPVNSDLRESGSIEQDADLIMFIYRDEvYHDDSPDKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNYAGPAFD 461
Cdd:PRK06321 395 RANHRPMMSDLRESGSIEQDSDLVMFLLRRE-YYDPNDKPGTAELIVAKNRHGSIGSVPLVFEKEFARFRNYAACEFP 471
|
|
| PRK06749 |
PRK06749 |
replicative DNA helicase; Provisional |
24-454 |
3.82e-96 |
|
replicative DNA helicase; Provisional
Pssm-ID: 168658 [Multi-domain] Cd Length: 428 Bit Score: 296.09 E-value: 3.82e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 24 EAEQSVLGGLMLDNEAwdrVAERVIDKDFYSRP-HRLIFQAMTRLSNAGNPIDLITLQEELERSeQLEEAGGFAYLVEIA 102
Cdd:PRK06749 7 EAEKTVLGSLLLDGEL---IKECRLTEQYFSMPvHKSIFQLMRKMEDEGQPIDLVTFTSRVDPN-FLKGIGGMEYFIGLM 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 103 KNTPSAANISAYAEIVRERAVVREMISVANEIveaGYEPQGRTSNDLLDLAESKVFQIAEQRTSANEGpqpLKLILeqtV 182
Cdd:PRK06749 83 DGVPTTSNFSYYEGLVRGAWKMYQAGVLGHKM---GERLIAEKSEKIIGETITALCELEEKDCVCEFD---LKDAL---V 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 183 DKIEELFKTPHNgVTGVSSGYNDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAAlTADKPVLIFSLEMPSEQIIM 262
Cdd:PRK06749 154 DLYEELHQDAKE-ITGIETGYTSLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAA-KSGAAVGLFSLEMSSKQLLK 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 263 RMLASVGRIDQTKVRTGQ--LDDEDWARLSSTMGLLLEKgKMYIDDSSGLTPTEVRSRARRVARDNGGIS-MIMVDYLQL 339
Cdd:PRK06749 232 RMASCVGEVSGGRLKNPKhrFAMEDWEKVSKAFAEIGEL-PLEIYDNAGVTVQDIWMQTRKLKRKHGDKKiLIIVDYLQL 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 340 MRV-PALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHD 418
Cdd:PRK06749 311 ITGdPKHKGNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYREDYYDK 390
|
410 420 430
....*....|....*....|....*....|....*.
gi 743522772 419 DSPDKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDN 454
Cdd:PRK06749 391 ETMQKEMTEIHVAKHRNGPVGSFKLRFLKEFGRFVE 426
|
|
| DnaB |
pfam00772 |
DnaB-like helicase N terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at ... |
18-120 |
7.58e-44 |
|
DnaB-like helicase N terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity.
Pssm-ID: 395624 [Multi-domain] Cd Length: 103 Bit Score: 149.31 E-value: 7.58e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 18 VPPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSEQLEEAGGFAY 97
Cdd:pfam00772 1 VPPHNIEAEQAVLGALLLDPEAIDEVADILKPEDFYDPAHRLIFEAILDLYDKGEPIDPVTVAEELEKKGKLEDVGGIAY 80
|
90 100
....*....|....*....|...
gi 743522772 98 LVEIAKNTPSAANISAYAEIVRE 120
Cdd:pfam00772 81 LAELAANVPSAANIEYYARIVKE 103
|
|
| PRK07773 |
PRK07773 |
replicative DNA helicase; Validated |
399-456 |
2.47e-22 |
|
replicative DNA helicase; Validated
Pssm-ID: 236093 [Multi-domain] Cd Length: 886 Bit Score: 100.59 E-value: 2.47e-22
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 743522772 399 SIEQDADLIMFIYRDEVYHDDSPDKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNYA 456
Cdd:PRK07773 827 SIEQDADVVILLYRPDYYDRDDPRGGEAEFIVAKHRNGPTGTVTLAFQLHLSRFANLA 884
|
|
| RecA-like_Gp4D_helicase |
cd19483 |
RecA-like domain of Escherichia coli bacteriophage T7 Gp4D helicase; This family includes the ... |
219-436 |
6.68e-18 |
|
RecA-like domain of Escherichia coli bacteriophage T7 Gp4D helicase; This family includes the RecA-like domain of the Gp4D fragment of the Gene4 helicase-primase (Gp4) from bacteriophage T7. Gp4D (residues 241-566) is the minimal fragment of the Gp4 that forms hexameric rings, it contains the helicase domain and the linker connecting the helicase and primase domains. Helicases are ring-shaped oligomeric enzymes that unwind DNA at the replication fork; they couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. This family belongs to the RecA-like NTPase superfamily which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410891 [Multi-domain] Cd Length: 231 Bit Score: 82.62 E-value: 6.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 219 VIVAARPSMGKTTFAMNLCEHAALTADKPVLIFSLEMPSEQIIMRMLASVGRIDQTKVRTGqlDDEDWARLSSTMGLLLE 298
Cdd:cd19483 1 VTIGAGSGIGKSTIVRELAYHLITEHGEKVGIISLEESVEETAKGLAGKHLGKPEPLELPR--DDITEEEEDDAFDNELG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 299 KGKMYIDDSSGLTPTEVRSRARRVARDNGGISMIMVDYLQ-LMRVPALSDNRTlEIGEISRSLKALAKELQCPVVALSQL 377
Cdd:cd19483 79 SGRFFLYDHFGSLDWDNLKEKIRYMVKVLGCKVIVLDHLTiLVSGLDSSDERK-ELDEIMTELAALVKELGVTIILVSHL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 743522772 378 NRSlEQRAD----KRPVNSDLRESGSIEQDADLIMFIYRDEvYHDDSPDKGIAEIIIGKQRNG 436
Cdd:cd19483 158 RRP-GGGKGheegGEVSESDLRGSSAIAQLSDYVIGLERNK-QADDPVERNTTRVRVLKNRFT 218
|
|
| 41 |
PHA02542 |
41 helicase; Provisional |
26-414 |
3.40e-13 |
|
41 helicase; Provisional
Pssm-ID: 222864 [Multi-domain] Cd Length: 473 Bit Score: 71.25 E-value: 3.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 26 EQSVLGGLmLDNEAWDRVAERVIDKD-FYSRPHRLIFQAMTRLSNAGNPIDLIT-LQEELERSE--QLEEAGGFAYLVEI 101
Cdd:PHA02542 2 EETILSNL-IFNEDYFRKVWPYLKAEyFESGPEKVIFKLIKKHVNEYNAIPTIEaLSIALENRSlsEVTFDGAKDLLSSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 102 AKNTPSAANISAYAE-IVRERAVVREMiSVANEIVEAGYEPQGRTSNDLLDLaeskvfqiaeqrtsaNEGPQPLKLILEQ 180
Cdd:PHA02542 81 SDNPEDLDWLVKETEkWCQDRAMYNAL-SKAIEIQDNADKPLEKRNKKLPDV---------------GAIPDIMQEALAI 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 181 TVDK---------IEELFKTPHNGVTGVSSGYNDLDKMT-AGLQRSDLVIVAARPSMGKTTFamnLCEHAA--LTADKPV 248
Cdd:PHA02542 145 SFDSsvghdyfedYEERYDSYQSKANKIPFKLEILNKITkGGAERKTLNVLLAGVNVGKSLG---LCSLAAdyLQQGYNV 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 249 LIFSLEMPSEQIIMRMLASVGRIDQTKvrtgqLDDEDWARLSSTMGLLLEK--GKMYIDD---SSGLTPTEVRSRARRVA 323
Cdd:PHA02542 222 LYISMEMAEEVIAKRIDANLLDVSLDD-----IDDLSKAEYKAKMEKLRSKtqGKLIIKQyptGGAHAGHFRALLNELKL 296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 324 RDNGGISMIMVDYLQLM---RVPALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADkrPVNSDLRESGSI 400
Cdd:PHA02542 297 KKNFKPDVIIVDYLGICassRLRVSSENSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDSSD--VDMSDTAESAGL 374
|
410
....*....|....
gi 743522772 401 EQDADLIMFIYRDE 414
Cdd:PHA02542 375 PATADFMLAVIETE 388
|
|
| PRK05973 |
PRK05973 |
replicative DNA helicase; Provisional |
217-395 |
4.05e-07 |
|
replicative DNA helicase; Provisional
Pssm-ID: 168322 [Multi-domain] Cd Length: 237 Bit Score: 50.80 E-value: 4.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 217 DLVIVAARPSMGKTTFAMNLCEhAALTADKPVLIFSLEMPSEQIIMRMLAsvgrIDQTKVRTG---QLDDEDwaRLSSTm 293
Cdd:PRK05973 65 DLVLLGARPGHGKTLLGLELAV-EAMKSGRTGVFFTLEYTEQDVRDRLRA----LGADRAQFAdlfEFDTSD--AICAD- 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 294 glllekgkmYIDDSSGLTPtevrsrarrvardnGGiSMIMVDYLQLM----RVPALSDNrtleigeiSRSLKALAKELQC 369
Cdd:PRK05973 137 ---------YIIARLASAP--------------RG-TLVVIDYLQLLdqrrEKPDLSVQ--------VRALKSFARERGL 184
|
170 180
....*....|....*....|....*.
gi 743522772 370 PVVALSQLNRSLEQRADKRPVNSDLR 395
Cdd:PRK05973 185 IIVFISQIDRSFDPSAKPLPDIRDVR 210
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
199-415 |
2.55e-06 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 48.37 E-value: 2.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 199 VSSGYNDLDKMTA-GLQRSDLVIVAARPSMGKTTFAMNLCeHAALTADKPVLIFSLEMPSEQIIMRMlASVGridqtkvr 277
Cdd:COG0467 2 VPTGIPGLDELLGgGLPRGSSTLLSGPPGTGKTTLALQFL-AEGLRRGEKGLYVSFEESPEQLLRRA-ESLG-------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 278 tgqLDDEDwarlsstmglLLEKGKMYIDDSS----GLTPTEVRSRARRVARDNgGISMIMVD----YLQLMRVPAlsdnr 349
Cdd:COG0467 72 ---LDLEE----------YIESGLLRIIDLSpeelGLDLEELLARLREAVEEF-GAKRVVIDslsgLLLALPDPE----- 132
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 743522772 350 tlEIGEISRSLKALAKELQCPVVALSQLnrsleqradkrPVNSDLRESGSIEQDADLIMFIYRDEV 415
Cdd:COG0467 133 --RLREFLHRLLRYLKKRGVTTLLTSET-----------GGLEDEATEGGLSYLADGVILLRYVEL 185
|
|
| AAA_25 |
pfam13481 |
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
213-378 |
2.60e-06 |
|
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins.
Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 47.76 E-value: 2.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 213 LQRSDLVIVAARPSMGKTTFAMNLCEHAAL----------TADKPVLIFSLEMPSEQIIMRMLAsvgridqtkVRTGQLD 282
Cdd:pfam13481 30 LPAGGLGLLAGAPGTGKTTLALDLAAAVATgkpwlggprvPEQGKVLYVSAEGPADELRRRLRA---------AGADLDL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 283 DEDWARLSstmglLLEKGKMYIDDSSGLTPTEVRSRARRVARDNGGISMIMVDYLQlmRVPALSDNRTLEIGEISRSLKA 362
Cdd:pfam13481 101 PARLLFLS-----LVESLPLFFLDRGGPLLDADVDALEAALEEVEDPDLVVIDPLA--RALGGDENSNSDVGRLVKALDR 173
|
170
....*....|....*.
gi 743522772 363 LAKELQCPVVALSQLN 378
Cdd:pfam13481 174 LARRTGATVLLVHHVG 189
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
199-310 |
4.60e-06 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 47.64 E-value: 4.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 199 VSSGYNDLDKMT-AGLQRSDLVIVAARPSMGKTTFAMNLCEhAALTADKPVLIFSLEMPSEQIIMRMLA---------SV 268
Cdd:cd01124 1 VKTGIPGLDELLgGGIPKGSVTLLTGGPGTGKTLFGLQFLY-AGAKNGEPGLFFTFEESPERLLRNAKSfgwdfdemeDE 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 743522772 269 GRIDQTKVRTGQLDDEDWARLSSTMGLLLEKGK---MYIDDSSGL 310
Cdd:cd01124 80 GKLIIVDAPPTEAGRFSLDELLSRILSIIKSFKakrVVIDSLSGL 124
|
|
| PRK09302 |
PRK09302 |
circadian clock protein KaiC; Reviewed |
199-295 |
7.36e-03 |
|
circadian clock protein KaiC; Reviewed
Pssm-ID: 236461 [Multi-domain] Cd Length: 509 Bit Score: 38.71 E-value: 7.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743522772 199 VSSGYNDLDKMTA-GLQRSDLVIVAARPSMGKTTFAMNLCEhAALTADKPVLIFSLEMPSEQIImRMLASVGrID-QTKV 276
Cdd:PRK09302 255 ISSGVPDLDEMLGgGFFRGSIILVSGATGTGKTLLASKFAE-AACRRGERCLLFAFEESRAQLI-RNARSWG-IDlEKME 331
|
90
....*....|....*....
gi 743522772 277 RTGQLDDEdwARLSSTMGL 295
Cdd:PRK09302 332 EKGLLKII--CARPESYGL 348
|
|
| |
