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Conserved domains on  [gi|746101552|ref|WP_039167715|]
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MULTISPECIES: DUF896 domain-containing protein [Bacillus]

Protein Classification

DUF896 domain-containing protein( domain architecture ID 10008366)

DUF896 family protein similar to Bacillus subtilis SOS response protein YnzC and Lactococcus lactis UPF0291 protein YlaC

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YnzC COG4224
Uncharacterized conserved protein YnzC, UPF0291/DUF896 family [Function unknown];
1-74 9.10e-32

Uncharacterized conserved protein YnzC, UPF0291/DUF896 family [Function unknown];


:

Pssm-ID: 443368  Cd Length: 75  Bit Score: 105.31  E-value: 9.10e-32
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 746101552  1 MISKEQLARINELSKKSKETGLSDAEKTEQKQLREEYLKAFRSSMKNTLKTVKIVDPEGNDVTPEKLKRERDQN 74
Cdd:COG4224   1 MLMKEKIDRINELAKKAKEEGLTEEEKKEQKKLRQEYLKNFRGSFRNQLENIKVVDPEGNDVTPEKLKEIQRKK 74
 
Name Accession Description Interval E-value
YnzC COG4224
Uncharacterized conserved protein YnzC, UPF0291/DUF896 family [Function unknown];
1-74 9.10e-32

Uncharacterized conserved protein YnzC, UPF0291/DUF896 family [Function unknown];


Pssm-ID: 443368  Cd Length: 75  Bit Score: 105.31  E-value: 9.10e-32
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 746101552  1 MISKEQLARINELSKKSKETGLSDAEKTEQKQLREEYLKAFRSSMKNTLKTVKIVDPEGNDVTPEKLKRERDQN 74
Cdd:COG4224   1 MLMKEKIDRINELAKKAKEEGLTEEEKKEQKKLRQEYLKNFRGSFRNQLENIKVVDPEGNDVTPEKLKEIQRKK 74
DUF896 pfam05979
Bacterial protein of unknown function (DUF896); In B. subtilis, one small SOS response operon ...
 5-66 4.75e-29

Bacterial protein of unknown function (DUF896); In B. subtilis, one small SOS response operon under the control of LexA, the yneA operon, is comprised of three genes: yneA, yneB, and ynzC. This family consists of several short, hypothetical bacterial proteins of unknown function. These proteins are mainly found in gram-positive firmicutes. Structures show that the N-terminus is composed of two alpha helices forming a helix-loop-helix motif. The structure of ynzC from B. subtilis forms a trimeric complex. Structural modelling suggests this domain may bind nucleic acids. This family is also known as UPF0291.


Pssm-ID: 428703  Cd Length: 62  Bit Score: 97.96  E-value: 4.75e-29
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 746101552   5 EQLARINELSKKSKETGLSDAEKTEQKQLREEYLKAFRSSMKNTLKTVKIVDPEGNDVTPEK 66
Cdd:pfam05979  1 EKIDRINELAKKAKTEGLTEEEKAEQKKLRKEYLKAFRASFKSQLENVKVVDPNGNDVTPEK 62
PRK02539 PRK02539
DUF896 family protein;
2-76 1.30e-19

DUF896 family protein;


Pssm-ID: 179440  Cd Length: 85  Bit Score: 74.93  E-value: 1.30e-19
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 746101552  2 ISKEQLARINELSKKSKETGLSDAEKTEQKQLREEYLKAFRSSMKNTLKTVKIVDPEGNDVTPEKLKR-ERDQNLH 76
Cdd:PRK02539  1 MDPKKIARINELAKKKKTEGLTGEEKVEQAKLREEYIEGYRRSVRHHIEGIKIVDEEGNDVTPEKLRQvQREKGLH 76
 
Name Accession Description Interval E-value
YnzC COG4224
Uncharacterized conserved protein YnzC, UPF0291/DUF896 family [Function unknown];
1-74 9.10e-32

Uncharacterized conserved protein YnzC, UPF0291/DUF896 family [Function unknown];


Pssm-ID: 443368  Cd Length: 75  Bit Score: 105.31  E-value: 9.10e-32
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 746101552  1 MISKEQLARINELSKKSKETGLSDAEKTEQKQLREEYLKAFRSSMKNTLKTVKIVDPEGNDVTPEKLKRERDQN 74
Cdd:COG4224   1 MLMKEKIDRINELAKKAKEEGLTEEEKKEQKKLRQEYLKNFRGSFRNQLENIKVVDPEGNDVTPEKLKEIQRKK 74
DUF896 pfam05979
Bacterial protein of unknown function (DUF896); In B. subtilis, one small SOS response operon ...
 5-66 4.75e-29

Bacterial protein of unknown function (DUF896); In B. subtilis, one small SOS response operon under the control of LexA, the yneA operon, is comprised of three genes: yneA, yneB, and ynzC. This family consists of several short, hypothetical bacterial proteins of unknown function. These proteins are mainly found in gram-positive firmicutes. Structures show that the N-terminus is composed of two alpha helices forming a helix-loop-helix motif. The structure of ynzC from B. subtilis forms a trimeric complex. Structural modelling suggests this domain may bind nucleic acids. This family is also known as UPF0291.


Pssm-ID: 428703  Cd Length: 62  Bit Score: 97.96  E-value: 4.75e-29
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 746101552   5 EQLARINELSKKSKETGLSDAEKTEQKQLREEYLKAFRSSMKNTLKTVKIVDPEGNDVTPEK 66
Cdd:pfam05979  1 EKIDRINELAKKAKTEGLTEEEKAEQKKLRKEYLKAFRASFKSQLENVKVVDPNGNDVTPEK 62
PRK02539 PRK02539
DUF896 family protein;
2-76 1.30e-19

DUF896 family protein;


Pssm-ID: 179440  Cd Length: 85  Bit Score: 74.93  E-value: 1.30e-19
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 746101552  2 ISKEQLARINELSKKSKETGLSDAEKTEQKQLREEYLKAFRSSMKNTLKTVKIVDPEGNDVTPEKLKR-ERDQNLH 76
Cdd:PRK02539  1 MDPKKIARINELAKKKKTEGLTGEEKVEQAKLREEYIEGYRRSVRHHIEGIKIVDEEGNDVTPEKLRQvQREKGLH 76
PRK01546 PRK01546
hypothetical protein; Provisional
 1-74 1.87e-14

hypothetical protein; Provisional


Pssm-ID: 100891  Cd Length: 79  Bit Score: 61.59  E-value: 1.87e-14
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 746101552  1 MISKEQLARINELSKKSKETGLSDAEKTEQKQLREEYLKAFRSSMKNTLKTVKIVDPEGNDVTPEKLKRERDQN 74
Cdd:PRK01546  1 MLSHELVERINFLAKKAKAEGLTEEEQRERQSLREQYLKGFRQNMLNELKGIKVVNEQGTDVTPAKLKALKKQD 74
PRK01631 PRK01631
hypothetical protein; Provisional
 4-68 6.80e-10

hypothetical protein; Provisional


Pssm-ID: 167247  Cd Length: 76  Bit Score: 50.11  E-value: 6.80e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 746101552  4 KEQLARINELSKKSKETGLSDAEKTEQKQLREEYLKAFRSSMKNTLKTVKIVDPEGNDVTPEKLK 68
Cdd:PRK01631  2 KNILFRINELSKKEKATGLTVDEKQEQQMLRQNYTQTFRGSLDSILLNTKIVDQNGLNVTPAALQ 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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