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Conserved domains on  [gi|746232526|ref|WP_039281140|]
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MULTISPECIES: ABC transporter permease [Pectobacterium]

Protein Classification

ABC transporter permease( domain architecture ID 11439530)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0140359|GO:0042626|GO:0016020
PubMed:  18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 2-259 1.08e-58

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


:

Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 187.24  E-value: 1.08e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526   2 KNVLWWIPRMLILGTLIFLIFGPLANLLLWSVAEKWFyPHLLPNDWGFAFWKRVFSPRGVaWEALGNSVLVAVFTVLASL 81
Cdd:COG1177    1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWF-LTFPPEGFTLRWYAELFSDPRL-LDALLNSLLIALLSTLLAT 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  82 SLAIPAGYALARLPLPARGLILLVFLIPQAFPNLTVYVNIARLFYQWGLNGTLLGVVLVHTVHGLVFAVWIASAAFSAVG 161
Cdd:COG1177   79 VLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFD 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 162 REMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSYFVGAPDVQMMPLLLYTAGAGGNYQIASITAL 241
Cdd:COG1177  159 PSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALST 238

                        250
                 ....*....|....*...
gi 746232526 242 VLLIPSVLFMLVVERFLK 259
Cdd:COG1177  239 LLILLSLLLLLLAERLRR 256
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 2-259 1.08e-58

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 187.24  E-value: 1.08e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526   2 KNVLWWIPRMLILGTLIFLIFGPLANLLLWSVAEKWFyPHLLPNDWGFAFWKRVFSPRGVaWEALGNSVLVAVFTVLASL 81
Cdd:COG1177    1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWF-LTFPPEGFTLRWYAELFSDPRL-LDALLNSLLIALLSTLLAT 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  82 SLAIPAGYALARLPLPARGLILLVFLIPQAFPNLTVYVNIARLFYQWGLNGTLLGVVLVHTVHGLVFAVWIASAAFSAVG 161
Cdd:COG1177   79 VLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFD 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 162 REMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSYFVGAPDVQMMPLLLYTAGAGGNYQIASITAL 241
Cdd:COG1177  159 PSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALST 238

                        250
                 ....*....|....*...
gi 746232526 242 VLLIPSVLFMLVVERFLK 259
Cdd:COG1177  239 LLILLSLLLLLLAERLRR 256
modB PRK09421
molybdate ABC transporter permease subunit;
63-206 2.76e-16

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 75.73  E-value: 2.76e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  63 WEALGNSVLVAVFTVLASLSLAIPAGYALAR------------------LPLPARGLILLVFLIPQAFpnltvyvnIARL 124
Cdd:PRK09421   8 WQAVLLSLKVSSVAVLFSLPFGILVAWLLARcrfpgkslldsllhlplvLPPVVTGYLLLISMGRRGF--------IGQW 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 125 FYQWglngtlLGVVLVHTVHGLVFAVWIAS---------AAFSAVGREMEQAARSIGAGPWRAFVDITLPLAMPGLMASA 195
Cdd:PRK09421  80 LYEW------FGISFAFSWRGAALAAAVMAfplmvrairLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGT 153

                        170
                 ....*....|.
gi 746232526 196 IFVFLESLDEF 206
Cdd:PRK09421 154 VLAFARSLGEF 164
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 7-253 2.63e-15

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 75.10  E-value: 2.63e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526    7 WIPRMLILGTLIFLIFGPLanLLLWSVAEKWFYPHllPNDW-GFAFWKRVFSPRGVaWEALGNSVLVAVFTVLASLSLAI 85
Cdd:TIGR03262   1 LIARLLLAGMILALLLFLL--LPLLALLTKSVYDS--DGDFiGLANFAEYFATPGL-LQSLGNSLTVSAIVTAIVVPLAF 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526   86 PAGYALARLPLPARGLILLVFLIPQAFPNLTVYVNIARLFyqwGLNGTLLGVVLVHTVHGLV------------FAVWIA 153
Cdd:TIGR03262  76 AFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLF---GNQGLLKGLLGGFSIYGFWgivigevfytfpHALMIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  154 SAAFSAVGREMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSYFVGApDVQMMPLLLYTAGAG-GN 232
Cdd:TIGR03262 153 VTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGG-DYNVLATDIYKQVIGqQN 231

                         250       260
                  ....*....|....*....|.
gi 746232526  233 YQIASITALVLLIPSVLFMLV 253
Cdd:TIGR03262 232 FPMGAVVGVLLLLPALLAFGI 252
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 66-245 9.92e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 70.39  E-value: 9.92e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  66 LGNSVLVAVFTVLASLSLAIPAGYALARLPLPARGLILLVFLIPQAFPNLTV----YVNIARLFYQWGLNGTLLGVVLVH 141
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLglllVLLFGVLLGWGILPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 142 TVHGLVFAVWIASAAFSAVGREMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSYFVGAPDVQMMP 221
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....
gi 746232526 222 LLLYTAGAGGNYQIASITALVLLI 245
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALI 184
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 84-260 4.93e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 54.61  E-value: 4.93e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526   84 AIPAGYALARLPLP-ARGLILLVFLIPQAFPNLTVYVNIARLFYQWGLNGTLLGVVLVHTVHGLVFAVWIASAAFSAVGR 162
Cdd:pfam00528   1 GIPLGIIAALRRGRrLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  163 EMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSYFVGAPdvQMMPLLLYTAGAGGNYQIASITALV 242
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW--PGLGLLLIEAILGYDYPEIQGPVLA 158

                         170
                  ....*....|....*...
gi 746232526  243 LLIPSVLFMLVVERFLKA 260
Cdd:pfam00528 159 AALILLLLNLLVDILQRL 176
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 2-259 1.08e-58

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 187.24  E-value: 1.08e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526   2 KNVLWWIPRMLILGTLIFLIFGPLANLLLWSVAEKWFyPHLLPNDWGFAFWKRVFSPRGVaWEALGNSVLVAVFTVLASL 81
Cdd:COG1177    1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWF-LTFPPEGFTLRWYAELFSDPRL-LDALLNSLLIALLSTLLAT 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  82 SLAIPAGYALARLPLPARGLILLVFLIPQAFPNLTVYVNIARLFYQWGLNGTLLGVVLVHTVHGLVFAVWIASAAFSAVG 161
Cdd:COG1177   79 VLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFD 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 162 REMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSYFVGAPDVQMMPLLLYTAGAGGNYQIASITAL 241
Cdd:COG1177  159 PSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALST 238

                        250
                 ....*....|....*...
gi 746232526 242 VLLIPSVLFMLVVERFLK 259
Cdd:COG1177  239 LLILLSLLLLLLAERLRR 256
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 2-264 5.17e-40

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 139.85  E-value: 5.17e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526   2 KNVLWWIPRMLILGTLIFLIFGPLANLLLWSVAEKW----FYPHLLPNDWGFAFWKRVFSPRGVaWEALGNSVLVAVFTV 77
Cdd:COG0395    9 RRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAeifsGPPSLLPSEFTLENYRAAFTDGPF-GRYLLNSLIVAVVST 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  78 LASLSLAIPAGYALARLPLPARGLILLVFLIPQAFPNLTVYVNIARLFYQWGLNGTLLGVVLVHTVHGLVFAVWIASAAF 157
Cdd:COG0395   88 VLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFF 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 158 SAVGREMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSY-FVGAPDVQMMPLLLYT--AGAGGNYQ 234
Cdd:COG0395  168 RSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLiLLTSPDLRTLPVGLASfqGQYGTDWG 247

                        250       260       270
                 ....*....|....*....|....*....|
gi 746232526 235 IASITALVLLIPSVLFMLVVERFLKADVMA 264
Cdd:COG0395  248 LLMAAAVIATLPVLILFLFLQRYFVRGLTA 277
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
7-259 1.21e-35

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 133.36  E-value: 1.21e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526   7 WIPRMLILGTLIFLIFGPLANLLLWSVAekwfypHLLPNDWGFAFWKRVFSPrGVAWEALGNSVLVAVFTVLASLSLAIP 86
Cdd:COG1178  288 WLALALCLLLVLLGLLLPLLALLLWSLT------KALDDNLTLDNYRFVLLD-PSLLRALLNSLLLALLAALLAVLLALL 360

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  87 AGYALARLPLPARGLILLVFLIPQAFPNLTV---YVNIARLFYQWGLNGTLLGVVLVHTVHGLVFAVWIASAAFSAVGRE 163
Cdd:COG1178  361 LAYLVRRRRGRLARLLDRLAMLPYAVPGIVLglgLLLLFNRPLPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPS 440

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 164 MEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSYFVGAPDVQMMPLLLYTAGAGGNYQIASITALVL 243
Cdd:COG1178  441 LEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALLL 520

                        250
                 ....*....|....*.
gi 746232526 244 LIPSVLFMLVVERFLK 259
Cdd:COG1178  521 VLVSLLPVLLLERLLG 536
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 14-261 3.28e-30

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 114.47  E-value: 3.28e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  14 LGTLIFLIFGPLANLLLWSVAEKWFYPHLLPnDWGFAFWKRVFSpRGVAWEALGNSVLVAVFTVLASLSLAIPAGYALAR 93
Cdd:COG1176   19 LLWLLLFFVLPLLLLLVYSFTTRDPYGGVVP-GFTLENYARLFT-DPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLAR 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  94 LPLPARGLILLVFLIPQAFPNL-TVYVNIARLFYQWGLNGTLLGVVLVHTVHGLV---FAVWIAS-------------AA 156
Cdd:COG1176   97 APPRWRNLLLLLVILPFWTSFLvRTYAWIVLLGRNGLLNSLLLALGLIDEPLRLLyteFAVVIGLvyvylpfmvlplyAA 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 157 FSAVGREMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSYFVGAPDVQMMPLLLYT-AGAGGNYQI 235
Cdd:COG1176  177 LEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQqFLSALNWPL 256

                        250       260
                 ....*....|....*....|....*.
gi 746232526 236 ASITALVLLIPSVLFMLVVERFLKAD 261
Cdd:COG1176  257 AAALAVVLLLIVLLVLLLYLRLLRRR 282
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
7-268 3.29e-29

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 115.26  E-value: 3.29e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526   7 WIPRMLILGTLIFLIFGPLANLLLWSVAEKWFyphllpndwgfAFWKRVFSPRgvAWEALGNSVLVAVFTVLASLSLAIP 86
Cdd:COG1178   10 RLLLLLLALLLALLVLLPLLALLLRAFTDGLA-----------NFWALLSDPY--LWRALGNTLLLALLVTLLSLLLGVP 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  87 AGYALARLPLPARGLILLVFLIPQAFPNLTVYVNIARLFYQWGLNGTLL---------------GVVLVHTVHGLVFAVW 151
Cdd:COG1178   77 LAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLralfgleppdiyglgGIILVLVLFNYPYVYL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 152 IASAAFSAVGREMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSYFVGApDVQMMPLLLYTAGAG- 230
Cdd:COG1178  157 LLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGG-GYTTLTTAIYQAWLGd 235

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 746232526 231 GNYQIASITALVLLIPSVLFMLVVERFLKADVMARIGK 268
Cdd:COG1178  236 FDLGAAAALALVLLLLVLLLLLLERRLRRRRRYATVGG 273
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 2-259 1.11e-27

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 107.14  E-value: 1.11e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526   2 KNVLWWIPRMLILGTLIFLIF--GPLANLLLWSVAEKWFyphllpndwgfAFWKRVFSPRgvAWEALGNSVLVAVFTVLA 79
Cdd:COG0555    3 RRVLPGFGLTLGLTLLYLSLIvlLPLAALVLKAAGLGWA-----------EFWAVLTSPR--VLAALKLSLGTALIAALI 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  80 SLSLAIPAGYALARLPLPARGLILLVFLIPQAFPN-------LTVYVN---IARLFYQWGLN--GTLLGVVLVHTVHGLV 147
Cdd:COG0555   70 NLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTavagialLLLFGPngwLGQLLAPLGIKvaFTPLGIVLAQTFVSLP 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 148 FAVWIASAAFSAVGREMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFtGSYFVGAPDVQM----MPLL 223
Cdd:COG0555  150 FVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEF-GAVIFIAGNLPMkteiLPLL 228

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 746232526 224 LYTAGAGGNYQIASITALVLLIPSVLFMLVVERFLK 259
Cdd:COG0555  229 IYLKLEEGDYAGATAIALVLLLISFLLLLLINLLQR 264
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 11-252 3.65e-23

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 98.40  E-value: 3.65e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  11 MLILGTLIFLIFGPLANLLLWSVAEKWFYPHLLPNDWGFAFWKRVFSprgVAWEALGNSVLVAVFTVLASLSLAIPAGYA 90
Cdd:COG4135  306 LALMLLIALLSLLGLALLLLWSFAGRWRFPDALPSSWTLRFWQRAAP---GLLEPLGNTLLLALASALIALVLVLACLEA 382

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  91 LARLPLPARGLILLVFLIPQAFPNLTVYVNIARLFYQWGLNGTLLGVVLVHTVHGLVFAVWIASAAFSAVGREMEQAARS 170
Cdd:COG4135  383 EARRGRRPGRRALWLLYLPLLVPQIAFLFGLQVLLLRLGLDGTWLAVIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAAS 462

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 171 IGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSYFVGAPDVQMMPLLLYTAGAGGNYQIASITALVL-LIPSVL 249
Cdd:COG4135  463 LGASPWRVFWRVKLPLLLRPILTAAAVGFAVSVAQYLPTLLIGAGRVATLTTEAVALASGGDRRVIAVYALLQaLLPLLG 542


                 ...
gi 746232526 250 FML 252
Cdd:COG4135  543 FAL 545
modB PRK09421
molybdate ABC transporter permease subunit;
63-206 2.76e-16

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 75.73  E-value: 2.76e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  63 WEALGNSVLVAVFTVLASLSLAIPAGYALAR------------------LPLPARGLILLVFLIPQAFpnltvyvnIARL 124
Cdd:PRK09421   8 WQAVLLSLKVSSVAVLFSLPFGILVAWLLARcrfpgkslldsllhlplvLPPVVTGYLLLISMGRRGF--------IGQW 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 125 FYQWglngtlLGVVLVHTVHGLVFAVWIAS---------AAFSAVGREMEQAARSIGAGPWRAFVDITLPLAMPGLMASA 195
Cdd:PRK09421  80 LYEW------FGISFAFSWRGAALAAAVMAfplmvrairLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGT 153

                        170
                 ....*....|.
gi 746232526 196 IFVFLESLDEF 206
Cdd:PRK09421 154 VLAFARSLGEF 164
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 4-252 7.04e-16

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 75.43  E-value: 7.04e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526   4 VLWWIPRMLILGTLIFLifgPLANLLLWSVAEkwfyphllPNDWGFAFWKRVFSPRGVAwEALGNSVLVAVFTVLASLSL 83
Cdd:PRK15050  25 LLWLLLPLLVLAPLVVY---PLVRVVLQSLTG--------EHGLGLATYRAVLGSPDFR-GALLTTLQIAFASTAGCLVL 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  84 AIPAGYALARLPLPARGLI---------LLVFLIPQAFPNL-----TVYVNIARLFY--QWGLN--GTLLGVVLVHTVHG 145
Cdd:PRK15050  93 GVLLALVLAFVPFPGASLVgrfidtfvaFPSFLITLAFTFLygsagSVNIALQRLFGleAPPLDflYSPGGVILAEITFY 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 146 LVFAVWIASAAFSAVGREMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSYFVGAPDVQMMPLLLY 225
Cdd:PRK15050 173 TPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPVLIY 252

                        250       260
                 ....*....|....*....|....*....
gi 746232526 226 TAG-AGGNYQIASITALVLLIPSV-LFML 252
Cdd:PRK15050 253 SKAiVDFDYPTACAIAVVNLALSLgLYAL 281
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 7-253 2.63e-15

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 75.10  E-value: 2.63e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526    7 WIPRMLILGTLIFLIFGPLanLLLWSVAEKWFYPHllPNDW-GFAFWKRVFSPRGVaWEALGNSVLVAVFTVLASLSLAI 85
Cdd:TIGR03262   1 LIARLLLAGMILALLLFLL--LPLLALLTKSVYDS--DGDFiGLANFAEYFATPGL-LQSLGNSLTVSAIVTAIVVPLAF 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526   86 PAGYALARLPLPARGLILLVFLIPQAFPNLTVYVNIARLFyqwGLNGTLLGVVLVHTVHGLV------------FAVWIA 153
Cdd:TIGR03262  76 AFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLF---GNQGLLKGLLGGFSIYGFWgivigevfytfpHALMIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  154 SAAFSAVGREMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSYFVGApDVQMMPLLLYTAGAG-GN 232
Cdd:TIGR03262 153 VTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGG-DYNVLATDIYKQVIGqQN 231

                         250       260
                  ....*....|....*....|.
gi 746232526  233 YQIASITALVLLIPSVLFMLV 253
Cdd:TIGR03262 232 FPMGAVVGVLLLLPALLAFGI 252
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 66-245 9.92e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 70.39  E-value: 9.92e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  66 LGNSVLVAVFTVLASLSLAIPAGYALARLPLPARGLILLVFLIPQAFPNLTV----YVNIARLFYQWGLNGTLLGVVLVH 141
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLglllVLLFGVLLGWGILPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 142 TVHGLVFAVWIASAAFSAVGREMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSYFVGAPDVQMMP 221
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....
gi 746232526 222 LLLYTAGAGGNYQIASITALVLLI 245
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALI 184
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
6-262 3.77e-12

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 64.77  E-value: 3.77e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526   6 WWIPRMLILGTLIFL---IFGPLANLLLWSVaekwFYPHLLPNDW---GFAFWKRVFSpRGVAWEALGNSVLVAVFTVLA 79
Cdd:COG1175   17 RLAAYLFLLPALLLLlvfVLYPLLYTLYLSF----TDWNLLGPPPefvGLDNYARLFT-DPRFWNALGNTLLFTVVSVPL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  80 SLSLAIPAGYALARlPLPARGLILLVFLIPQAFPnLTVYVNIARLFYQ------------WGLNGT---------LLGVV 138
Cdd:COG1175   92 QLVLGLLLALLLNR-KLRGRGFFRTLFFLPWVIS-PVVVALIWKWLFNpdygllnallgaLGLEPInwlgdpslaLPAVI 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 139 LVHTVHGLVFAVWIASAAFSAVGREMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSYFV--GAPD 216
Cdd:COG1175  170 IVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLtgGGPG 249

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 746232526 217 V--QMMPLLLY-TAGAGGNYQIASITALVLLIPSVLFMLVVERFLKADV 262
Cdd:COG1175  250 NstTTLVLYIYqTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
malG PRK10998
maltose ABC transporter permease MalG;
66-206 8.88e-12

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 63.96  E-value: 8.88e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  66 LGNSVLVAVFTVLASLSLAIPAGYALARLPLPARGLILLVFLIPQAFPNLTVYVNIARLFYQWGLNGTLLGV-----VLV 140
Cdd:PRK10998  85 LWNSVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYIPFIGLnthggVIF 164

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 746232526 141 HTVHGLVFAVWIASAAFSAVGREMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEF 206
Cdd:PRK10998 165 AYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEV 230
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 64-262 1.04e-11

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 63.08  E-value: 1.04e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  64 EALGNSVLVAVFTVLASLSLAIPAGYALARLPLPARGLILLVFLIPQAFPNLTVYVNIARLFYQWGLNGTLLGVVLVHTV 143
Cdd:PRK09500  57 QAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFAHIT 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 144 HGLVFAVWIASAAFSAVGREMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSYFVGAPDVQMMPLL 223
Cdd:PRK09500 137 FCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLK 216

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 746232526 224 LYTAGAGGNYQIASITALVLLIPSVLFMLVVERFLKADV 262
Cdd:PRK09500 217 IYSMVKVGVSPEVNALATILLVLSLVLVILSQLLARDKT 255
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 84-260 4.93e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 54.61  E-value: 4.93e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526   84 AIPAGYALARLPLP-ARGLILLVFLIPQAFPNLTVYVNIARLFYQWGLNGTLLGVVLVHTVHGLVFAVWIASAAFSAVGR 162
Cdd:pfam00528   1 GIPLGIIAALRRGRrLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  163 EMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSYFVGAPdvQMMPLLLYTAGAGGNYQIASITALV 242
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW--PGLGLLLIEAILGYDYPEIQGPVLA 158

                         170
                  ....*....|....*...
gi 746232526  243 LLIPSVLFMLVVERFLKA 260
Cdd:pfam00528 159 AALILLLLNLLVDILQRL 176
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 63-219 3.92e-08

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 53.92  E-value: 3.92e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526   63 WEALGNSVLVAVFTVLASLSLAIPAGYALARLPL--PARGLILLVFLIPQAFPNLTVYVNIARLFYQ-----WGLNGTLL 135
Cdd:TIGR03262 331 WEAYKNSLRLAATTALIGTILVFGGAYLIEKTRGfgLLRGVLRFLAILPMAVPGLVLGLGYIFFFNAptnplNGLYGTMA 410

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  136 GVVLVHTVHGLVFAVWIASAAFSAVGREMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSYFVGAP 215
Cdd:TIGR03262 411 LLVLCTVVHFYTVSHLTAVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFLYSP 490


                  ....
gi 746232526  216 DVQM 219
Cdd:TIGR03262 491 DTKL 494
cysT CHL00187
sulfate transport protein; Provisional
 8-206 2.94e-07

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 50.01  E-value: 2.94e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526   8 IPRMLILGTLIFLIFGPLANLLLWSVAEKWFyphllpndwgfAFWKRVFSPrgVAWEALGNSVLVAVFTVLASLSLAIPA 87
Cdd:CHL00187  12 SIYIISLSYIIFLLVLPILALLIKASQQPWS-----------DFLQKATEP--IALSAYSLTLSMALIAALINGFFGLLI 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  88 GYALARLPLPARGLILLVFLIPQAFPNLTVYVNIARLFYQWGLNGTLL---GVVLVHTVHGLVFAVWIASAAFSA----- 159
Cdd:CHL00187  79 AWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLLshlGIQIVFTKLGVLLAMIFVSFPFVVrtiqp 158

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 746232526 160 ----VGREMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEF 206
Cdd:CHL00187 159 vlqeIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEY 209
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 10-249 4.77e-07

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 49.85  E-value: 4.77e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  10 RMLILGTLIFLIFGPLANLLLWSvaekwFYPHLLPNDW-GFAF-WKRVFSPRGVAWEALGNSVLVAVFTVLASLSLAIPA 87
Cdd:PRK10592  12 RIVILVLGFTFLYAPMLMLVIYS-----FNSSKLVTVWaGWSTrWYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIA 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  88 GYALARLPlPARGLILLVFLI--PQAFPNLTVYVNIARLF------YQWGLNGTLLGVVLVHTVHGLVFAVWIASAAFSA 159
Cdd:PRK10592  87 AVVMVRFG-RFRGSNGFAFMItaPLVMPDVITGLSLLLLFvalahaIGWPADRGMLTIWLAHVTFCTAYVAVVISSRLRE 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 160 VGREMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEFTGSYFVGAPDVQMMPLLLY-TAGAGGNYQIASI 238
Cdd:PRK10592 166 LDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFsSVRMGVNPEINAL 245

                        250
                 ....*....|.
gi 746232526 239 TALVLLIPSVL 249
Cdd:PRK10592 246 ATLILGVVGIV 256
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 51-193 1.53e-05

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 44.66  E-value: 1.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  51 FWKRVFSPRGVAWEALGNSVLVAVFTVLASLSLAIPAGYALARLPlPARGLILLVFLIPQAFPNLTVyvnIARLFYQWGL 130
Cdd:COG1174    5 LIEWLADNRDGILALLLEHLLLVLLALLIALLIAVPLGILITRRR-RLAGLVLGVANILQTIPSLAL---LALLIPLLGI 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 746232526 131 ngTLLGVVLVHTVHGLVFAVWIASAAFSAVGREMEQAARSIGAGPWRAFVDITLPLAMPGLMA 193
Cdd:COG1174   81 --GPAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILA 141
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 64-206 1.61e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 42.37  E-value: 1.61e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  64 EALGNSVLVAVFTVLASLSLAIPAGYALARLPLPARGLILLVFLIPQAFPNLT-VYVNIARLFYQWGLNGTLLGVVLVHT 142
Cdd:PRK09497  63 EVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIrIYGLKIFLSTKGYLNEFLLWLGVIDT 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 143 -----------VHGLV-----FAVWIASAAFSAVGREMEQAARSIGAGPWRAFVDITLPLAMPGLMASAIFVFLESLDEF 206
Cdd:PRK09497 143 pirimftesavIIGLVyillpFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMF 222
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 63-256 6.25e-04

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 40.97  E-value: 6.25e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  63 WEALGNSVLVA----VFTVLASLSLAIPAGYALARLPLPARGLILLVFLIPQAFPNLTVYVNIARLFYQWGLNGTLLG-- 136
Cdd:PRK09433 318 WQALWTSLRIAlaaaLLAVVLTMMLLWSSRELRLRQRKLAAQALELSGMLILAMPGIVLATGLFLLLRNTTDLPASALgi 397

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526 137 VVLVHTVHGLVFAVWIASAAFSAVGREMEQAARSIGAGPWRAFVDITLP-LAMPGLMASAiFVFLESLDEFTGSYFVGAP 215
Cdd:PRK09433 398 VILTNALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRaLRRPLAQAFA-FACALSLGDFGVIALFGSQ 476

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 746232526 216 DVQMMPLLLYtaGAGGNYQI--ASITALVLLIPSVLFMLVVER 256
Cdd:PRK09433 477 DFRTLPFLLY--QQLGSYRSqdAAVTALLLLLLCLLLFTLIER 517
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 1-194 9.43e-04

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 39.75  E-value: 9.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526   1 MKNVLWWIPRMLILGTLIFLIFgplanLLLWSVAEKWFY--PHLLPNDW--GFAFWKRVFSprGVAWEALGNSVLVAVFT 76
Cdd:COG0600    1 MTTSTRRRLRRLLLPLLSLALL-----LALWELAARLGLvpPFLLPSPSavLAALVELLAS--GELWEHLLASLLRVLLG 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746232526  77 VLASLSLAIPAGYALARLPLpARGLILLVFLIPQAFPNLTvyvnIARLFYQWGLNGTLLGVVLVhtVHGLVFAVWIASA- 155
Cdd:COG0600   74 FALAALLGVPLGLLLGLSRL-LRRLLDPLLVFLRPIPPLA----LAPLLILWFGIGEASKIFVI--FLGAFFPILLNTAa 146

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 746232526 156 AFSAVGREMEQAARSIGAGPWRAFVDITLPLAMPGLMAS 194
Cdd:COG0600  147 GVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTG 185
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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