|
Name |
Accession |
Description |
Interval |
E-value |
| fliI |
PRK08972 |
flagellar protein export ATPase FliI; |
1-438 |
0e+00 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181599 [Multi-domain] Cd Length: 444 Bit Score: 900.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 1 MISLAERLKSYKVQGLTTRPVAAGKLVRVIGLTLEATGCRAPIGSLCLVETMTGQMEAEVVGFSGDNLFLMPSEQITGIL 80
Cdd:PRK08972 4 QHQLLNRLKQYKVKVPPFRAVASGKLVRVVGLTLEATGCRAPVGSLCSIETMAGELEAEVVGFDGDLLYLMPIEELRGVL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 81 PGAKVTPLTGESGLPVGMELLGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQ 160
Cdd:PRK08972 84 PGARVTPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 161 RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTI 240
Cdd:PRK08972 164 RMGLFAGSGVGKSVLLGMMTRGTTADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTI 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 241 AEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGPQQGSITAFFTVLTEGDDLQ 320
Cdd:PRK08972 244 AEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGSITAFYTVLTEGDDLQ 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 321 DPIADASRAILDGHIVLSREMADAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQ 400
Cdd:PRK08972 324 DPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVMPMVISEEHLEAMRRVKQVYSLYQQNRDLISIGAYKQGSDP 403
|
410 420 430
....*....|....*....|....*....|....*...
gi 746387340 401 AIDSAFTLKPKLDAYLQQQMKETVPYAMCVNMLKNVLG 438
Cdd:PRK08972 404 RIDNAIRLQPAMNAFLQQTMKEAVPYDMSVNMLKQLAA 441
|
|
| FliI_clade1 |
TIGR03496 |
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of ... |
24-433 |
0e+00 |
|
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274607 [Multi-domain] Cd Length: 411 Bit Score: 745.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 24 GKLVRVIGLTLEATGCRAPIGSLCLVETMTGQM-EAEVVGFSGDNLFLMPSEQITGILPGAKVTPLTGESGLPVGMELLG 102
Cdd:TIGR03496 1 GRVTRVVGLVLEAVGLRAPVGSRCEIESSDGDPiEAEVVGFRGDRVLLMPLEDVEGLRPGARVFPLGGPLRLPVGDSLLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 103 RVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKSVTLGMMTRG 182
Cdd:TIGR03496 81 RVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 183 TTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFA 262
Cdd:TIGR03496 161 TEADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLTRFA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 263 QAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGPQQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMA 342
Cdd:TIGR03496 241 MAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGEEGKGSITAFYTVLVEGDDQQDPIADAARAILDGHIVLSRELA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 343 DAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQAIDSAFTLKPKLDAYLQQQMKE 422
Cdd:TIGR03496 321 EQGHYPAIDILASISRVMPDVVSPEHRQAARRFKQLLSRYQENRDLISIGAYQAGSDPELDQAIALYPRIEAFLQQGMRE 400
|
410
....*....|.
gi 746387340 423 TVPYAMCVNML 433
Cdd:TIGR03496 401 RASFEESLEAL 411
|
|
| FliI |
COG1157 |
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular ... |
17-437 |
0e+00 |
|
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440771 [Multi-domain] Cd Length: 433 Bit Score: 744.54 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 17 TTRPVAAGKLVRVIGLTLEATGCRAPIGSLCLVETMTGQ-MEAEVVGFSGDNLFLMPSEQITGILPGAKVTPLTGESGLP 95
Cdd:COG1157 14 LPPVRVSGRVTRVVGLLIEAVGPDASIGELCEIETADGRpVLAEVVGFRGDRVLLMPLGDLEGISPGARVVPTGRPLSVP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 96 VGMELLGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKSVT 175
Cdd:COG1157 94 VGDGLLGRVLDGLGRPLDGKGPLPGEERRPLDAPPPNPLERARITEPLDTGVRAIDGLLTVGRGQRIGIFAGSGVGKSTL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 176 LGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDVLLLM 255
Cdd:COG1157 174 LGMIARNTEADVNVIALIGERGREVREFIEDDLGEEGLARSVVVVATSDEPPLMRLRAAYTATAIAEYFRDQGKNVLLLM 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 256 DSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGpqQGSITAFFTVLTEGDDLQDPIADASRAILDGHI 335
Cdd:COG1157 254 DSLTRFAMAQREIGLAAGEPPATRGYPPSVFALLPRLLERAGNGG--KGSITAFYTVLVEGDDMNDPIADAVRGILDGHI 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 336 VLSREMADAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQAIDSAFTLKPKLDAY 415
Cdd:COG1157 332 VLSRKLAERGHYPAIDVLASISRVMPDIVSPEHRALARRLRRLLARYEENEDLIRIGAYQPGSDPELDEAIALIPAIEAF 411
|
410 420
....*....|....*....|..
gi 746387340 416 LQQQMKETVPYAMCVNMLKNVL 437
Cdd:COG1157 412 LRQGMDERVSFEESLAQLAELL 433
|
|
| fliI |
PRK05688 |
flagellar protein export ATPase FliI; |
3-438 |
0e+00 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 168181 [Multi-domain] Cd Length: 451 Bit Score: 638.70 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 3 SLAERLKSYK-VQGLTTRPVAAGKLVRVIGLTLEATGCRAPIGSLCLVE----TMTGQMEAEVVGFSGDNLFLMPSEQIT 77
Cdd:PRK05688 7 SFAKRLEGYAeAISLPAQPVVEGRLLRMVGLTLEAEGLRAAVGSRCLVInddsYHPVQVEAEVMGFSGDKVFLMPVGSVA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 78 GILPGAKVTPLTGESGLPVGMELLGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVG 157
Cdd:PRK05688 87 GIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 158 KGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTA 237
Cdd:PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 238 LTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGPQQGSITAFFTVLTEGD 317
Cdd:PRK05688 247 TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGGSITAFYTVLSEGD 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 318 DLQDPIADASRAILDGHIVLSREMADAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPG 397
Cdd:PRK05688 327 DQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVDPEHLRRAQRFKQLWSRYQQSRDLISVGAYVAG 406
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 746387340 398 TDQAIDSAFTLKPKLDAYLQQQMKETVPYAMCVNMLKNVLG 438
Cdd:PRK05688 407 GDPETDLAIARFPHLVQFLRQGLRENVSLAQSREQLAAIFA 447
|
|
| fliI |
PRK07960 |
flagellum-specific ATP synthase FliI; |
24-439 |
0e+00 |
|
flagellum-specific ATP synthase FliI;
Pssm-ID: 181182 [Multi-domain] Cd Length: 455 Bit Score: 575.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 24 GKLVRVIGLTLEATGCRAPIGSLCLVETMTG----QMEAEVVGFSGDNLFLMPSEQITGILPGAKV--TPLTGESG---- 93
Cdd:PRK07960 29 GRLTRATGLVLEATGLQLPLGATCVIERQNGsethEVESEVVGFNGQRLFLMPLEEVEGILPGARVyaRNISGEGLqsgk 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 94 -LPVGMELLGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGK 172
Cdd:PRK07960 109 qLPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGK 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 173 SVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDVL 252
Cdd:PRK07960 189 SVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVL 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 253 LLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGPQQGSITAFFTVLTEGDDLQDPIADASRAILD 332
Cdd:PRK07960 269 LIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILD 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 333 GHIVLSREMADAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQAIDSAFTLKPKL 412
Cdd:PRK07960 349 GHIVLSRRLAEAGHYPAIDIEASISRAMTALIDEQHYARVRQFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQL 428
|
410 420
....*....|....*....|....*..
gi 746387340 413 DAYLQQQMKETVPYAMCVNMLKNVLGV 439
Cdd:PRK07960 429 EAFLQQGIFERADWEDSLQALERIFPT 455
|
|
| FliI_clade2 |
TIGR03497 |
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of ... |
24-437 |
0e+00 |
|
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274608 [Multi-domain] Cd Length: 413 Bit Score: 575.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 24 GKLVRVIGLTLEATGCRAPIGSLCLVETMTGQ-MEAEVVGFSGDNLFLMPSEQITGILPGAKVTPLTGESGLPVGMELLG 102
Cdd:TIGR03497 1 GKVTRVIGLTIESKGPKASIGELCSILTKGGKpVLAEVVGFKEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGLLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 103 RVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKSVTLGMMTRG 182
Cdd:TIGR03497 81 RVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 183 TTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFA 262
Cdd:TIGR03497 161 AKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMMDSVTRFA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 263 QAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGgpQQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMA 342
Cdd:TIGR03497 241 MAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNS--QKGSITGFYTVLVDGDDMNEPIADAVRGILDGHIVLSRELA 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 343 DAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQAIDSAFTLKPKLDAYLQQQMKE 422
Cdd:TIGR03497 319 AKNHYPAIDVLASVSRVMNEIVSEEHKELAGKLRELLAVYKEAEDLINIGAYKRGSNPKIDEAIRYIEKINSFLKQGIDE 398
|
410
....*....|....*
gi 746387340 423 TVPYAMCVNMLKNVL 437
Cdd:TIGR03497 399 KFTFEETVQLLKELL 413
|
|
| fliI_yscN |
TIGR01026 |
ATPase, FliI/YscN family; This family of ATPases demonstrates extensive homology with ATP ... |
24-438 |
0e+00 |
|
ATPase, FliI/YscN family; This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 273401 [Multi-domain] Cd Length: 440 Bit Score: 558.14 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 24 GKLVRVIGLTLEATGCRAPIGSLCLVET--MTGQMEAEVVGFSGDNLFLMPSEQITGILPGAKVTPLTGESGLPVGMELL 101
Cdd:TIGR01026 25 GRVTKVKGLLIEAVGPQASVGDLCLIERrgSEGRLVAEVVGFNGEFVFLMPYEEVEGVRPGSKVLATGEGLSIKVGDGLL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 102 GRVIDGVGNPLDGLGPIYTEHRASFNAQ-PMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKSVTLGMMT 180
Cdd:TIGR01026 105 GRVLDGLGKPIDGKGKFLDNVETEGLITaPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 181 RGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTR 260
Cdd:TIGR01026 185 RNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTR 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 261 FAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGpqQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE 340
Cdd:TIGR01026 265 FAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGASG--KGSITAFYTVLVEGDDMNEPIADSVRGILDGHIVLSRA 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 341 MADAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQAIDSAFTLKPKLDAYLQQQM 420
Cdd:TIGR01026 343 LAQRGHYPAIDVLASISRLMTAIVSEEHRRAARKFRELLSKYKDNEDLIRIGAYQRGSDRELDFAIAKYPKLERFLKQGI 422
|
410
....*....|....*...
gi 746387340 421 KETVPYAMCVNMLKNVLG 438
Cdd:TIGR01026 423 NEKVNFEESLQQLEEIFR 440
|
|
| fliI |
PRK07721 |
flagellar protein export ATPase FliI; |
1-438 |
0e+00 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181092 [Multi-domain] Cd Length: 438 Bit Score: 519.66 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 1 MISLAERLKSYKvqglttrpvAAGKLVRVIGLTLEATGCRAPIGSLCLVETMTGQ---MEAEVVGFSGDNLFLMPSEQIT 77
Cdd:PRK07721 6 LIDCIETLDPYK---------RYGKVSRVIGLMIESKGPESSIGDVCYIHTKGGGdkaIKAEVVGFKDEHVLLMPYTEVA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 78 GILPGAKVTPlTGES-GLPVGMELLGRVIDGVGNPLD------GLGPIYTEHrasfnaQPMNPLARKPITEPLDVGLKAI 150
Cdd:PRK07721 77 EIAPGCLVEA-TGKPlEVKVGSGLIGQVLDALGEPLDgsalpkGLAPVSTDQ------DPPNPLKRPPIREPMEVGVRAI 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 151 NGLLTVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMR 230
Cdd:PRK07721 150 DSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMR 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 231 LKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGgpQQGSITAFF 310
Cdd:PRK07721 230 IKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTN--ASGSITAFY 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 311 TVLTEGDDLQDPIADASRAILDGHIVLSREMADAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVS 390
Cdd:PRK07721 308 TVLVDGDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVMNHIVSPEHKEAANRFRELLSTYQNSEDLIN 387
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 746387340 391 IGAYKPGTDQAIDSAFTLKPKLDAYLQQQMKETVPYAMCVNMLKNVLG 438
Cdd:PRK07721 388 IGAYKRGSSREIDEAIQFYPQIISFLKQGTDEKATFEESIQALLSLFG 435
|
|
| III_secr_ATP |
TIGR02546 |
type III secretion apparatus H+-transporting two-sector ATPase; [Protein fate, Protein and ... |
24-426 |
6.74e-180 |
|
type III secretion apparatus H+-transporting two-sector ATPase; [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274191 [Multi-domain] Cd Length: 422 Bit Score: 508.40 E-value: 6.74e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 24 GKLVRVIGLTLEATGCRAPIGSLCLVETMT-GQMEAEVVGFSGDNLFLMPSEQITGILPGAKVTPLTGESGLPVGMELLG 102
Cdd:TIGR02546 7 GRVTEVSGTLLKAVLPGARVGELCLIRRRDpSQLLAEVVGFTGDEALLSPLGELHGISPGSEVIPTGRPLSIRVGEALLG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 103 RVIDGVGNPLDGLGPI-YTEHRA-SFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKSVTLGMMT 180
Cdd:TIGR02546 87 RVLDGFGRPLDGKGELpAGEIETrPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 181 RGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTR 260
Cdd:TIGR02546 167 RGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLTR 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 261 FAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGpqQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE 340
Cdd:TIGR02546 247 FARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGNGE--KGSITALYTVLVEGDDMNDPIADEVRSILDGHIVLSRA 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 341 MADAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQAIDSAFTLKPKLDAYLQQQM 420
Cdd:TIGR02546 325 LAERNHYPAIDVLASLSRVMSQVVSTEHRRAAGKLRRLLATYKEVELLIRLGEYQPGSDPETDDAIDKIDAIRAFLRQST 404
|
....*.
gi 746387340 421 KETVPY 426
Cdd:TIGR02546 405 DEYSPY 410
|
|
| FliI_clade3 |
TIGR03498 |
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of ... |
24-437 |
2.36e-179 |
|
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Pssm-ID: 163293 [Multi-domain] Cd Length: 418 Bit Score: 506.84 E-value: 2.36e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 24 GKLVRVIGLTLEATG--CRAPIGSLCLVETMTGQ-MEAEVVGFSGDNLFLMPSEQITGILPGAKVTPLTGESGLPVGMEL 100
Cdd:TIGR03498 1 GRVTAVTGLLIEVRGlsRAVRLGDRCAIRARDGRpVLAEVVGFNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 101 LGRVIDGVGNPLDGLGPIYT-EHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKSVTLGMM 179
Cdd:TIGR03498 81 LGRVINALGEPIDGKGPLPQgERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSML 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 180 TRGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLT 259
Cdd:TIGR03498 161 ARNTDADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 260 RFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGPQQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSR 339
Cdd:TIGR03498 241 RFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAEGKGSITGIFTVLVDGDDHNEPVADAVRGILDGHIVLDR 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 340 EMADAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQAIDSAFTLKPKLDAYLQQQ 419
Cdd:TIGR03498 321 AIAERGRYPAINVLASVSRLAPRVWSPEERKLVRRLRALLARYEETEDLIRLGAYRKGSDPELDEAIRLVPKIYEFLTQG 400
|
410
....*....|....*...
gi 746387340 420 MKETVPYAMCVNMLKNVL 437
Cdd:TIGR03498 401 PDEPTSLQDPFADLAAIL 418
|
|
| fliI |
PRK07196 |
flagellar protein export ATPase FliI; |
16-434 |
7.04e-168 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180875 [Multi-domain] Cd Length: 434 Bit Score: 478.62 E-value: 7.04e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 16 LTTRPVA--AGKLVRVIGLTLEATGCRAPIGSLCLVETMTGQ-MEAEVVGFSGDNLFLMPSEQITGILPGAKVTPLTGES 92
Cdd:PRK07196 9 IENIHLArvAGRLVRVTGLLLESVGCRLAIGQRCRIESVDETfIEAQVVGFDRDITYLMPFKHPGGVLGGARVFPSEQDG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 93 GLPVGMELLGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGK 172
Cdd:PRK07196 89 ELLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGK 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 173 SVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDVL 252
Cdd:PRK07196 169 SVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVL 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 253 LLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNgGPQQGSITAFFTVLTEGDDLQDPIADASRAILD 332
Cdd:PRK07196 249 LLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGN-SSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLD 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 333 GHIVLSREMADAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQAIDSAFTLKPKL 412
Cdd:PRK07196 328 GHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYADYMAIKPLIPLGGYVAGADPMADQAVHYYPAI 407
|
410 420
....*....|....*....|..
gi 746387340 413 DAYLQQQMKETVPYAMCVNMLK 434
Cdd:PRK07196 408 TQFLRQEVGHPALFSASVEQLT 429
|
|
| fliI |
PRK08927 |
flagellar protein export ATPase FliI; |
1-438 |
4.50e-164 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 236351 [Multi-domain] Cd Length: 442 Bit Score: 469.07 E-value: 4.50e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 1 MISLAERLKsyKVQGLTTRpvaaGKLVRVIGLTLEATGCRA--PIGSLCLVETMTGQ-MEAEVVGFSGDNLFLMPSEQIT 77
Cdd:PRK08927 2 MAALAAAIG--DIDTLVIY----GRVVAVRGLLVEVAGPIHalSVGARIVVETRGGRpVPCEVVGFRGDRALLMPFGPLE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 78 GILPGAKVTPLTGESGLPVGMELLGRVIDGVGNPLDGLGPIYT-EHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTV 156
Cdd:PRK08927 76 GVRRGCRAVIANAAAAVRPSRAWLGRVVNALGEPIDGKGPLPQgPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTC 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 157 GKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQT 236
Cdd:PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNADADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 237 ALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGPQQGSITAFFTVLTEG 316
Cdd:PRK08927 236 TLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGPIGEGTITGLFTVLVDG 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 317 DDLQDPIADASRAILDGHIVLSREMADAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKP 396
Cdd:PRK08927 316 DDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCNDPEENPLVRRARQLMATYADMEELIRLGAYRA 395
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 746387340 397 GTDQAIDSAFTLKPKLDAYLQQQMKETVPYAMCVNMLKNVLG 438
Cdd:PRK08927 396 GSDPEVDEAIRLNPALEAFLRQGKDEATSLAEGYARLAQILG 437
|
|
| ATPase_flagellum-secretory_path_III |
cd01136 |
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; ... |
94-359 |
2.38e-163 |
|
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton-driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 410880 [Multi-domain] Cd Length: 265 Bit Score: 460.49 E-value: 2.38e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 94 LPVGMELLGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKS 173
Cdd:cd01136 2 IPVGDGLLGRVIDALGEPLDGKGLPDEPERRPLIAAPPNPLKRAPIEQPLPTGVRAIDGLLTCGEGQRIGIFAGSGVGKS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 174 VTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDVLL 253
Cdd:cd01136 82 TLLGMIARNTDADVNVIALIGERGREVREFIEKDLGEEGLKRSVLVVATSDESPLLRVRAAYTATAIAEYFRDQGKKVLL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 254 LMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGgpQQGSITAFFTVLTEGDDLQDPIADASRAILDG 333
Cdd:cd01136 162 LMDSLTRFAMAQREVGLAAGEPPTRRGYPPSVFALLPRLLERAGNG--EKGSITAFYTVLVEGDDFNDPIADEVRSILDG 239
|
250 260
....*....|....*....|....*.
gi 746387340 334 HIVLSREMADAGHYPAIDVEKSVSRV 359
Cdd:cd01136 240 HIVLSRRLAERGHYPAIDVLASISRV 265
|
|
| fliI |
PRK08472 |
flagellar protein export ATPase FliI; |
6-438 |
1.66e-160 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181439 [Multi-domain] Cd Length: 434 Bit Score: 459.92 E-value: 1.66e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 6 ERLKSyKVQGLTTRPvAAGKLVRVIGLTLEATGCRAPIGSLCLVETMTGQME--AEVVGFSGDNLFLMPSEQITGILPGA 83
Cdd:PRK08472 4 ESLKN-KLQKFNLSP-RFGSITKISPTIIEADGLNPSVGDIVKIESSDNGKEclGMVVVIEKEQFGISPFSFIEGFKIGD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 84 KVtpLTGESGL--PVGMELLGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQR 161
Cdd:PRK08472 82 KV--FISKEGLniPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 162 IGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDgRKRSVVVAAPADASPLMRLKGCQTALTIA 241
Cdd:PRK08472 160 LGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGD-LENTVIVVATSDDSPLMRKYGAFCAMSVA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 242 EYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGgPQQGSITAFFTVLTEGDDLQD 321
Cdd:PRK08472 239 EYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKE-EGKGSITAFFTVLVEGDDMSD 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 322 PIADASRAILDGHIVLSREMADAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQA 401
Cdd:PRK08472 318 PIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMNDIISPEHKLAARKFKRLYSLLKENEVLIRIGAYQKGNDKE 397
|
410 420 430
....*....|....*....|....*....|....*..
gi 746387340 402 IDSAFTLKPKLDAYLQQQMKETVPYAMCVNMLKNVLG 438
Cdd:PRK08472 398 LDEAISKKEFMEQFLKQNPNELFPFEQTFEQLEEILR 434
|
|
| PRK06820 |
PRK06820 |
EscN/YscN/HrcN family type III secretion system ATPase; |
24-438 |
1.12e-157 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180712 [Multi-domain] Cd Length: 440 Bit Score: 452.73 E-value: 1.12e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 24 GKLVRVIGLTLEATGCRAPIGSLCLVETmtGQMEAEVVGFSGDNLFLMPSEQITGILPGAKVTPLTGESGLPVGMELLGR 103
Cdd:PRK06820 31 GPIVEIGPTLLRASLPGVAQGELCRIEP--QGMLAEVVSIEQEMALLSPFASSDGLRCGQWVTPLGHMHQVQVGADLAGR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 104 VIDGVGNPLDGLGPIYTEHRASFNAQPmNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKSVTLGMMTRGT 183
Cdd:PRK06820 109 ILDGLGAPIDGGPPLTGQWRELDCPPP-SPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGMLCADS 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 184 TAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQ 263
Cdd:PRK06820 188 AADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTATTIAEYFRDRGKKVLLMADSLTRYAR 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 264 AQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGgpQQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMAD 343
Cdd:PRK06820 268 AAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNS--DRGSITAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAG 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 344 AGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQAIDSAFTLKPKLDAYLQQQMKET 423
Cdd:PRK06820 346 AGHYPAIDIAASVSRIMPQIVSAGQLAMAQKLRRMLACYQEIELLVRVGEYQAGEDLQADEALQRYPAICAFLQQDHSET 425
|
410
....*....|....*
gi 746387340 424 VPYAMCVNMLKNVLG 438
Cdd:PRK06820 426 AHLETTLEHLAQVVG 440
|
|
| PRK06936 |
PRK06936 |
EscN/YscN/HrcN family type III secretion system ATPase; |
24-438 |
5.59e-148 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180762 [Multi-domain] Cd Length: 439 Bit Score: 428.02 E-value: 5.59e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 24 GKLVRVIGLTLEATGCRAPIGSLCLVET--MTGQMEAEVVGFSGDNLFLMPSEQITGILPGAKVTPLTGESGLPVGMELL 101
Cdd:PRK06936 25 GRVTQVTGTILKAVVPGVRIGELCYLRNpdNSLSLQAEVIGFAQHQALLTPLGEMYGISSNTEVSPTGTMHQVGVGEHLL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 102 GRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKSVTLGMMTR 181
Cdd:PRK06936 105 GRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIR 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 182 GTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRF 261
Cdd:PRK06936 185 SAEVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRF 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 262 AQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGgpQQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREM 341
Cdd:PRK06936 265 ARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQS--DKGSITALYTVLVEGDDMTEPVADETRSILDGHIILSRKL 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 342 ADAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQAIDSAFTLKPKLDAYLQQQMK 421
Cdd:PRK06936 343 AAANHYPAIDVLRSASRVMNQIVSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQDKEADQAIERIGAIRGFLRQGTH 422
|
410
....*....|....*..
gi 746387340 422 ETVPYAMCVNMLKNVLG 438
Cdd:PRK06936 423 ELSHFNETLNLLETLTQ 439
|
|
| PRK09099 |
PRK09099 |
type III secretion system ATPase; Provisional |
20-439 |
6.50e-143 |
|
type III secretion system ATPase; Provisional
Pssm-ID: 169656 [Multi-domain] Cd Length: 441 Bit Score: 415.32 E-value: 6.50e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 20 PVAAGKLVRVIGLTLEATGCRAPIGSLCLVETMTGQM--EAEVVGFSGDNLFLMPSEQITGILPGAKVTPLTGESGLPVG 97
Cdd:PRK09099 22 VRRTGKVVEVIGTLLRVSGLDVTLGELCELRQRDGTLlqRAEVVGFSRDVALLSPFGELGGLSRGTRVIGLGRPLSVPVG 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 98 MELLGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKSVTLG 177
Cdd:PRK09099 102 PALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMG 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 178 MMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDVLLLMDS 257
Cdd:PRK09099 182 MFARGTQCDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGLRVLLMMDS 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 258 LTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGgpQQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVL 337
Cdd:PRK09099 262 LTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMG--ETGSITALYTVLAEDESGSDPIAEEVRGILDGHMIL 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 338 SREMADAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQAIDSAFTLKPKLDAYLQ 417
Cdd:PRK09099 340 SREIAARNQYPAIDVLGSLSRVMPQVVPREHVQAAGRLRQLLAKHREVETLLQVGEYRAGSDPVADEAIAKIDAIRDFLS 419
|
410 420
....*....|....*....|..
gi 746387340 418 QQMKETVPYAMCVNMLKNVLGV 439
Cdd:PRK09099 420 QRTDEYSDPDATLAALAELSGD 441
|
|
| PRK08149 |
PRK08149 |
FliI/YscN family ATPase; |
28-433 |
9.21e-128 |
|
FliI/YscN family ATPase;
Pssm-ID: 236166 [Multi-domain] Cd Length: 428 Bit Score: 376.26 E-value: 9.21e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 28 RVIGLTLEATGCRAPIGSLCLVETMTGQME----AEVVGFSGDNLFLMP-------SEQITgILPGAKvtPLTgesgLPV 96
Cdd:PRK08149 12 RIQGPIIEAELPDVAIGEICEIRAGWHSNEviarAQVVGFQRERTILSLignaqglSRQVV-LKPTGK--PLS----VWV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 97 GMELLGRVIDGVGNPLDGLGP-----IYTEHRASFNAqPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVG 171
Cdd:PRK08149 85 GEALLGAVLDPTGKIVERFDApptvgPISEERVIDVA-PPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAGCG 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 172 KSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDV 251
Cdd:PRK08149 164 KTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAEYFRDQGKRV 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 252 LLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNggPQQGSITAFFTVLTEGDDLQDPIADASRAIL 331
Cdd:PRK08149 244 VLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGA--TLAGSITAFYTVLLESEEEPDPIGDEIRSIL 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 332 DGHIVLSREMADAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQAIDSAFTLKPK 411
Cdd:PRK08149 322 DGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQVTDPKHRQLAAAFRKLLTRLEELQLFIDLGEYRRGENADNDRAMDKRPA 401
|
410 420
....*....|....*....|..
gi 746387340 412 LDAYLQQQMKETVPYAMCVNML 433
Cdd:PRK08149 402 LEAFLKQDVAEKSSFSDTLERL 423
|
|
| ATP-synt_ab |
pfam00006 |
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP ... |
146-357 |
4.15e-127 |
|
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Pssm-ID: 425417 [Multi-domain] Cd Length: 212 Bit Score: 366.30 E-value: 4.15e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 146 GLKAINGLLTVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADA 225
Cdd:pfam00006 1 GIRAIDGLLPIGRGQRIGIFGGSGVGKTVLAGMIARQASADVVVYALIGERGREVREFIEELLGSGALKRTVVVVATSDE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 226 SPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGPQQGS 305
Cdd:pfam00006 81 PPLARYRAPYTALTIAEYFRDQGKDVLLIMDSLTRFAEALREISLALGEPPGREGYPPSVFSLLARLLERAGRVKGKGGS 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 746387340 306 ITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMADAGHYPAIDVEKSVS 357
Cdd:pfam00006 161 ITALPTVLVPGDDITDPIPDNTRSILDGQIVLSRDLAEKGHYPAIDVLASVS 212
|
|
| PRK07594 |
PRK07594 |
EscN/YscN/HrcN family type III secretion system ATPase; |
24-438 |
5.19e-126 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 136438 [Multi-domain] Cd Length: 433 Bit Score: 371.98 E-value: 5.19e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 24 GKLVRVIGLTLEATGCRAPIGSLCLVetMTGQMEAEVVGFSGDNLFLMPSEQITGILPGAKVTPLTGESGLPVGMELLGR 103
Cdd:PRK07594 23 GRIQDVSATLLNAWLPGVFMGELCCI--KPGEELAEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 104 VIDGVGNPLDGLgPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKSVTLGMMTRGT 183
Cdd:PRK07594 101 VIDGFGRPLDGR-ELPDVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAP 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 184 TAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQ 263
Cdd:PRK07594 180 DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYAR 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 264 AQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGgpQQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMAD 343
Cdd:PRK07594 260 AAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 344 AGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQAIDSAFTLKPKLDAYLQQQMKET 423
Cdd:PRK07594 338 RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEV 417
|
410
....*....|....*
gi 746387340 424 VPYAMCVNMLKNVLG 438
Cdd:PRK07594 418 CGPELLIEKLHQILT 432
|
|
| RecA-like_ion-translocating_ATPases |
cd19476 |
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the ... |
94-359 |
5.36e-117 |
|
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the NTP-binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410884 [Multi-domain] Cd Length: 270 Bit Score: 342.90 E-value: 5.36e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 94 LPVGMELLGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKS 173
Cdd:cd19476 2 VPVGPELLGRILDGLGEPLDGLPPIKTKQRRPIHLKAPNPIERLPPEEPLQTGIKVIDLLAPYGRGQKIGIFGGSGVGKT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 174 VTLGMMTRGTT---AQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLD 250
Cdd:cd19476 82 VLAMQLARNQAkahAGVVVFAGIGERGREVNDLYEEFTKSGAMERTVVVANTANDPPGARMRVPYTGLTIAEYFRDNGQH 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 251 VLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGPQQGSITAFFTVLTEGDDLQDPIADASRAI 330
Cdd:cd19476 162 VLLIIDDISRYAEALREMSALLGEPPGREGYPPYLFTKLATLYERAGKVKDGGGSITAIPAVSTPGDDLTDPIPDNTFAI 241
|
250 260
....*....|....*....|....*....
gi 746387340 331 LDGHIVLSREMADAGHYPAIDVEKSVSRV 359
Cdd:cd19476 242 LDGQIVLSRELARKGIYPAINVLDSTSRV 270
|
|
| fliI |
PRK06002 |
flagellar protein export ATPase FliI; |
14-418 |
9.61e-117 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 235666 [Multi-domain] Cd Length: 450 Bit Score: 348.91 E-value: 9.61e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 14 QGLTTRPVAAGKLvRVIGLTLEATgcrapIGSLCLVETMTGQMEAEVVGFSGDNLFLMPSEQITGILPGAKVTPLtGESG 93
Cdd:PRK06002 26 IGGTVSEVTASHY-RVRGLSRFVR-----LGDFVAIRADGGTHLGEVVRVDPDGVTVKPFEPRIEIGLGDAVFRK-GPLR 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 94 LPVGMELLGRVIDGVGNPLDGLGPIYT-EHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGK 172
Cdd:PRK06002 99 IRPDPSWKGRVINALGEPIDGLGPLAPgTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGK 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 173 SVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGeDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDVL 252
Cdd:PRK06002 179 STLLAMLARADAFDTVVIALVGERGREVREFLEDTLA-DNLKKAVAVVATSDESPMMRRLAPLTATAIAEYFRDRGENVL 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 253 LLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGPQQGSITAFFTVLTEGDDLQDPIADASRAILD 332
Cdd:PRK06002 258 LIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVADSIRGTLD 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 333 GHIVLSREMADAGHYPAIDVEKSVSRVMPQITTDEHvlmSKAVRQILS-ICR--KNQDLVSIGAYKPGTDQAIDSAFTLK 409
Cdd:PRK06002 338 GHIVLDRAIAEQGRYPAVDPLASISRLARHAWTPEQ---RKLVSRLKSmIARfeETRDLRLIGGYRAGSDPDLDQAVDLV 414
|
....*....
gi 746387340 410 PKLDAYLQQ 418
Cdd:PRK06002 415 PRIYEALRQ 423
|
|
| fliI |
PRK06793 |
flagellar protein export ATPase FliI; |
36-437 |
2.52e-107 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180696 [Multi-domain] Cd Length: 432 Bit Score: 324.24 E-value: 2.52e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 36 ATGCRAPIGSLCLVETmtGQMEAEVVGFSGDNLFLMPSEQITGILPGAKVTPLTGESGLPVGMELLGRVIDGVGNPLDGL 115
Cdd:PRK06793 35 AKGPKAKIGDVCFVGE--HNVLCEVIAIEKENNMLLPFEQTEKVCYGDSVTLIAEDVVIPRGNHLLGKVLSANGEVLNEE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 116 GPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGE 195
Cdd:PRK06793 113 AENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGE 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 196 RGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEP 275
Cdd:PRK06793 193 RGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKEL 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 276 PaTKGYPPSVFAKLPALVERAGNggPQQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMADAGHYPAIDVEKS 355
Cdd:PRK06793 273 P-IGGKTLLMESYMKKLLERSGK--TQKGSITGIYTVLVDGDDLNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDS 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 356 VSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQAidSAFTLKPKLD---AYLQQQMKETVPYAMCVNM 432
Cdd:PRK06793 350 VSRIMEEIVSPNHWQLANEMRKILSIYKENELYFKLGTIQENAENA--YIFECKNKVEginTFLKQGRSDSFQFDDIVEA 427
|
....*
gi 746387340 433 LKNVL 437
Cdd:PRK06793 428 MHHIV 432
|
|
| PRK05922 |
PRK05922 |
type III secretion system ATPase; Validated |
22-418 |
7.37e-94 |
|
type III secretion system ATPase; Validated
Pssm-ID: 102061 [Multi-domain] Cd Length: 434 Bit Score: 289.88 E-value: 7.37e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 22 AAGKLVRVIGLTLEATGCRAPIGSLCLVET-MTGQMEAEVVGFSGDNLFLMPSEQITGILPGAKVTPLTGESGLPVGMEL 100
Cdd:PRK05922 19 ECGLLSRVSGNLLEAQGLSACLGELCQISLsKSPPILAEVIGFHNRTTLLMSLSPIHYVALGAEVLPLRRPPSLHLSDHL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 101 LGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKSVTLGMMT 180
Cdd:PRK05922 99 LGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 181 RGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTR 260
Cdd:PRK05922 179 KGSKSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSR 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 261 FAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGgpQQGSITAFFTVLTEGDDlQDPIADASRAILDGHIVLSRE 340
Cdd:PRK05922 259 WIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNN--DKGSITALYAILHYPNH-PDIFTDYLKSLLDGHFFLTPQ 335
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 746387340 341 mADAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQAIDSAFTLKPKLDAYLQQ 418
Cdd:PRK05922 336 -GKALASPPIDILTSLSRSARQLALPHHYAAAEELRSLLKAYHEALDIIQLGAYVPGQDAHLDRAVKLLPSIKQFLSQ 412
|
|
| PRK04196 |
PRK04196 |
V-type ATP synthase subunit B; Provisional |
17-360 |
1.07e-52 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 235251 [Multi-domain] Cd Length: 460 Bit Score: 183.10 E-value: 1.07e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 17 TTRPVAAGKLVRVIGltleATGcrapigslclvETMTGQmeaeVVGFSGDNLFLMPSEQITGI-LPGAKVTpLTGES-GL 94
Cdd:PRK04196 19 GVEGVAYGEIVEIEL----PNG-----------EKRRGQ----VLEVSEDKAVVQVFEGTTGLdLKDTKVR-FTGEPlKL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 95 PVGMELLGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSG----- 169
Cdd:PRK04196 79 PVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGlphne 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 170 ----VGKSVTLgmmtRGTTAQ-VVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYF 244
Cdd:PRK04196 159 laaqIARQAKV----LGEEENfAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAAEYL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 245 R-DQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGPQQGSITaFFTVLT-EGDDLQDP 322
Cdd:PRK04196 235 AfEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIKGKKGSIT-QIPILTmPDDDITHP 313
|
330 340 350
....*....|....*....|....*....|....*...
gi 746387340 323 IADASRAILDGHIVLSREMADAGHYPAIDVEKSVSRVM 360
Cdd:PRK04196 314 IPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLM 351
|
|
| atpD |
TIGR01039 |
ATP synthase, F1 beta subunit; The sequences of ATP synthase F1 alpha and beta subunits are ... |
22-391 |
4.22e-52 |
|
ATP synthase, F1 beta subunit; The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 211621 [Multi-domain] Cd Length: 461 Bit Score: 181.46 E-value: 4.22e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 22 AAGKLVRVIG--LTLEATGCRAP--IGSLCLVETMTGQMEAEVVGFSGDNLF----LMPSEqitGILPGAKVTPLTGESG 93
Cdd:TIGR01039 1 TKGKVVQVIGpvVDVEFEQGELPriYNALKVQNRAESELTLEVAQHLGDDTVrtiaMGSTD---GLVRGLEVIDTGAPIS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 94 LPVGMELLGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKS 173
Cdd:TIGR01039 78 VPVGKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 174 VTLGMMTRGTTAQ---VVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRD-QGL 249
Cdd:TIGR01039 158 VLIQELINNIAKEhggYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAEYFRDeQGQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 250 DVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNggPQQGSITAFFTVLTEGDDLQDPIADASRA 329
Cdd:TIGR01039 238 DVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITS--TKTGSITSVQAVYVPADDLTDPAPATTFA 315
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 746387340 330 ILDGHIVLSREMADAGHYPAIDVEKSVSRVM-PQITTDEHVLMSKAVRQILSICRKNQDLVSI 391
Cdd:TIGR01039 316 HLDATTVLSRKIAELGIYPAVDPLDSTSRLLdPSVVGEEHYDVARGVQQILQRYKELQDIIAI 378
|
|
| F1-ATPase_beta_CD |
cd01133 |
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma ... |
95-360 |
1.99e-51 |
|
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410877 [Multi-domain] Cd Length: 277 Bit Score: 174.72 E-value: 1.99e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 95 PVGMELLGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKSV 174
Cdd:cd01133 3 PVGEETLGRIFNVLGEPIDERGPIKAKERWPIHREAPEFVELSTEQEILETGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 175 tLGMMTRGTTAQ----VVVVGLIGERGREVKEFIEE-----ILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFR 245
Cdd:cd01133 83 -LIMELINNIAKahggYSVFAGVGERTREGNDLYHEmkesgVINLDGLSKVALVYGQMNEPPGARARVALTGLTMAEYFR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 246 DQ-GLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNggPQQGSITAFFTVLTEGDDLQDPIA 324
Cdd:cd01133 162 DEeGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGSLQERITS--TKKGSITSVQAVYVPADDLTDPAP 239
|
250 260 270
....*....|....*....|....*....|....*.
gi 746387340 325 DASRAILDGHIVLSREMADAGHYPAIDVEKSVSRVM 360
Cdd:cd01133 240 ATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRIL 275
|
|
| V_A-ATPase_B |
cd01135 |
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ... |
94-360 |
1.91e-50 |
|
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Pssm-ID: 410879 [Multi-domain] Cd Length: 282 Bit Score: 172.02 E-value: 1.91e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 94 LPVGMELLGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKS 173
Cdd:cd01135 4 LPVSEDMLGRIFNGSGKPIDGGPPILPEDYLDINGPPINPVARIYPEEMIQTGISAIDVMNTLVRGQKLPIFSGSGLPHN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 174 VTLGMMTR------GTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFR-D 246
Cdd:cd01135 84 ELAAQIARqagvvgSEENFAIVFAAMGVTMEEARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTAEYLAyE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 247 QGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGPQQGSITAfFTVLT-EGDDLQDPIAD 325
Cdd:cd01135 164 KGKHVLVILTDMTNYAEALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRKGSITQ-IPILTmPNDDITHPIPD 242
|
250 260 270
....*....|....*....|....*....|....*
gi 746387340 326 ASRAILDGHIVLSREMADAGHYPAIDVEKSVSRVM 360
Cdd:cd01135 243 LTGYITEGQIYLDRDLHNKGIYPPIDVLPSLSRLM 277
|
|
| F1-ATPase_alpha_CD |
cd01132 |
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma ... |
95-359 |
2.39e-49 |
|
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410876 [Multi-domain] Cd Length: 274 Bit Score: 168.89 E-value: 2.39e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 95 PVGMELLGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGK-S 173
Cdd:cd01132 5 PVGEALLGRVVDALGNPIDGKGPIQTKERRRVESKAPGIIPRQSVNEPLQTGIKAIDSLIPIGRGQRELIIGDRQTGKtA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 174 VTLGMM--TRGTTAQVVVVGlIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDV 251
Cdd:cd01132 85 IAIDTIinQKGKKVYCIYVA-IGQKRSTVAQIVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFRDNGKHA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 252 LLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAG-----NGGpqqGSITAFFTVLTEGDDLQDPIADA 326
Cdd:cd01132 164 LIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAklsdeLGG---GSLTALPIIETQAGDVSAYIPTN 240
|
250 260 270
....*....|....*....|....*....|...
gi 746387340 327 SRAILDGHIVLSREMADAGHYPAIDVEKSVSRV 359
Cdd:cd01132 241 VISITDGQIFLESELFNKGIRPAINVGLSVSRV 273
|
|
| AtpD |
COG0055 |
FoF1-type ATP synthase, beta subunit [Energy production and conversion]; FoF1-type ATP ... |
24-391 |
5.61e-49 |
|
FoF1-type ATP synthase, beta subunit [Energy production and conversion]; FoF1-type ATP synthase, beta subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase
Pssm-ID: 439825 [Multi-domain] Cd Length: 468 Bit Score: 173.35 E-value: 5.61e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 24 GKLVRVIGLTLE---ATGCRAPIGSLCLVETMTGQ-MEAEVVGFSGDNLF----LMPSEqitGILPGAKVT----PLTge 91
Cdd:COG0055 6 GKIVQVIGPVVDvefPEGELPAIYNALEVENEGGGeLVLEVAQHLGDNTVrciaMDSTD---GLVRGMEVIdtgaPIS-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 92 sgLPVGMELLGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVG 171
Cdd:COG0055 81 --VPVGEATLGRIFNVLGEPIDGKGPIEAKERRPIHRPAPPFEEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 172 KSVTLGMMTRGTTAQ---VVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFRD-Q 247
Cdd:COG0055 159 KTVLIMELIHNIAKEhggVSVFAGVGERTREGNDLYREMKESGVLDKTALVFGQMNEPPGARLRVALTALTMAEYFRDeE 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 248 GLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGpqQGSITAFFTVLTEGDDLQDPIADAS 327
Cdd:COG0055 239 GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITSTK--KGSITSVQAVYVPADDLTDPAPATT 316
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 746387340 328 RAILDGHIVLSREMADAGHYPAIDVEKSVSRVM-PQITTDEHVLMSKAVRQILSICRKNQDLVSI 391
Cdd:COG0055 317 FAHLDATTVLSRKIAELGIYPAVDPLDSTSRILdPLIVGEEHYRVAREVQRILQRYKELQDIIAI 381
|
|
| PRK13343 |
PRK13343 |
F0F1 ATP synthase subunit alpha; Provisional |
78-359 |
4.25e-48 |
|
F0F1 ATP synthase subunit alpha; Provisional
Pssm-ID: 183987 [Multi-domain] Cd Length: 502 Bit Score: 171.64 E-value: 4.25e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 78 GILPGAKVTPLTGESGLPVGMELLGRVIDGVGNPLDGLGPIYTEHRasFNAQPMNP--LARKPITEPLDVGLKAINGLLT 155
Cdd:PRK13343 81 DILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPLQATAR--RPLERPAPaiIERDFVTEPLQTGIKVVDALIP 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 156 VGKGQRIGLFAGSGVGKSvTLGMMT----RGTTAQVVVVgLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPlmrl 231
Cdd:PRK13343 159 IGRGQRELIIGDRQTGKT-AIAIDAiinqKDSDVICVYV-AIGQKASAVARVIETLREHGALEYTTVVVAEASDPP---- 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 232 kGCQ-----TALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAG-----NGGp 301
Cdd:PRK13343 233 -GLQylapfAGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAklspeLGG- 310
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 746387340 302 qqGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMADAGHYPAIDVEKSVSRV 359
Cdd:PRK13343 311 --GSLTALPIIETLAGELSAYIPTNLISITDGQIYLDSDLFAAGQRPAVDVGLSVSRV 366
|
|
| atpB |
CHL00060 |
ATP synthase CF1 beta subunit |
59-391 |
6.54e-42 |
|
ATP synthase CF1 beta subunit
Pssm-ID: 214349 [Multi-domain] Cd Length: 494 Bit Score: 154.81 E-value: 6.54e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 59 EVVGFSGDNLFLMPSEQIT-GILPGAKVTPLTGESGLPVGMELLGRVIDGVGNPLDGLGPIYTE-----HRAsfnAQPMN 132
Cdd:CHL00060 60 EVQQLLGNNRVRAVAMSATdGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRttspiHRS---APAFI 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 133 PLARKP-ITEpldVGLKAINGLLTVGKGQRIGLFAGSGVGKSVtLGMMTRGTTAQ----VVVVGLIGERGREVKEFIEE- 206
Cdd:CHL00060 137 QLDTKLsIFE---TGIKVVDLLAPYRRGGKIGLFGGAGVGKTV-LIMELINNIAKahggVSVFGGVGERTREGNDLYMEm 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 207 ----ILGEDGRKRSVV--VAAPADASPLMRLKGCQTALTIAEYFRD---QglDVLLLMDSLTRFAQAQREIALSVGEPPA 277
Cdd:CHL00060 213 kesgVINEQNIAESKValVYGQMNEPPGARMRVGLTALTMAEYFRDvnkQ--DVLLFIDNIFRFVQAGSEVSALLGRMPS 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 278 TKGYPPSVFAKLPALVERAGNggPQQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMADAGHYPAIDVEKSVS 357
Cdd:CHL00060 291 AVGYQPTLSTEMGSLQERITS--TKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTS 368
|
330 340 350
....*....|....*....|....*....|....*
gi 746387340 358 RVM-PQITTDEHVLMSKAVRQILSICRKNQDLVSI 391
Cdd:CHL00060 369 TMLqPRIVGEEHYETAQRVKQTLQRYKELQDIIAI 403
|
|
| AtpA |
COG0056 |
FoF1-type ATP synthase, alpha subunit [Energy production and conversion]; FoF1-type ATP ... |
77-359 |
1.27e-40 |
|
FoF1-type ATP synthase, alpha subunit [Energy production and conversion]; FoF1-type ATP synthase, alpha subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase
Pssm-ID: 439826 [Multi-domain] Cd Length: 504 Bit Score: 151.34 E-value: 1.27e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 77 TGILPGAKVTPlTGE-SGLPVGMELLGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLT 155
Cdd:COG0056 80 EGIKEGDTVKR-TGRiLSVPVGEALLGRVVDPLGRPIDGKGPIEAEERRPVERPAPGVIDRQPVHEPLQTGIKAIDAMIP 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 156 VGKGQR---IGlfaGSGVGKSvTLGMMT----RGTTAQVVVVGlIGERGREVKEFIeEILGEDGR-KRSVVVAAPADASP 227
Cdd:COG0056 159 IGRGQReliIG---DRQTGKT-AIAIDTiinqKGKDVICIYVA-IGQKASTVAQVV-ETLEEHGAmEYTIVVAATASDPA 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 228 LMR----LKGCqtalTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVF---AKlpaLVERAG--- 297
Cdd:COG0056 233 PLQyiapYAGC----AMGEYFMDQGKDVLIVYDDLSKHAVAYRELSLLLRRPPGREAYPGDVFylhSR---LLERAAkls 305
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 746387340 298 --NGGpqqGSITAFftvltegddlqdPIA-----DASrA--------ILDGHIVLSREMADAGHYPAIDVEKSVSRV 359
Cdd:COG0056 306 deLGG---GSLTAL------------PIIetqagDVS-AyiptnvisITDGQIFLESDLFNAGIRPAINVGLSVSRV 366
|
|
| V_A-ATPase_A |
cd01134 |
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ... |
100-358 |
4.00e-39 |
|
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Pssm-ID: 410878 [Multi-domain] Cd Length: 288 Bit Score: 142.33 E-value: 4.00e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 100 LLGRVIDGVGNPLDGL---GPIYTEHRASFNAQP---MNPLARK-PITEPLDVGLKAINGLLTVGKGqriGLFA---GSG 169
Cdd:cd01134 10 LLGSIFDGIQRPLEVIaetGSIFIPRGVNVQRWPvrqPRPVKEKlPPNVPLLTGQRVLDTLFPVAKG---GTAAipgPFG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 170 VGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEE-------ILGEDGRKRSVVVA-------APADASplmrlkgCQ 235
Cdd:cd01134 87 CGKTVISQSLSKWSNSDVVIYVGCGERGNEMAEVLEEfpelkdpITGESLMERTVLIAntsnmpvAAREAS-------IY 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 236 TALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAG----NGGPQ-QGSITAFF 310
Cdd:cd01134 160 TGITIAEYFRDMGYNVSLMADSTSRWAEALREISGRLEEMPAEEGYPAYLGARLAEFYERAGrvrcLGSPGrEGSVTIVG 239
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 746387340 311 TVLTEGDDLQDPIADASRAILDGHIVLSREMADAGHYPAIDVEKSVSR 358
Cdd:cd01134 240 AVSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQRRHFPSINWLISYSK 287
|
|
| PRK09281 |
PRK09281 |
F0F1 ATP synthase subunit alpha; Validated |
95-359 |
6.75e-37 |
|
F0F1 ATP synthase subunit alpha; Validated
Pssm-ID: 236448 [Multi-domain] Cd Length: 502 Bit Score: 140.97 E-value: 6.75e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 95 PVGMELLGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQR---IGlfaGSGVG 171
Cdd:PRK09281 98 PVGEALLGRVVNPLGQPIDGKGPIEATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQReliIG---DRQTG 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 172 KSvTLGMMT----RGTTAQVVVVGlIGERGREVKEFIEeILGEDGR-KRSVVVAAPA-DASPLMRL---KGCqtalTIAE 242
Cdd:PRK09281 175 KT-AIAIDTiinqKGKDVICIYVA-IGQKASTVAQVVR-KLEEHGAmEYTIVVAATAsDPAPLQYLapyAGC----AMGE 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 243 YFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAG-----NGGpqqGSITAFFTVLTEGD 317
Cdd:PRK09281 248 YFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAklsdeLGG---GSLTALPIIETQAG 324
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 746387340 318 DLQDPIADASRAILDGHIVLSREMADAGHYPAIDVEKSVSRV 359
Cdd:PRK09281 325 DVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGISVSRV 366
|
|
| atpA |
CHL00059 |
ATP synthase CF1 alpha subunit |
79-359 |
4.81e-35 |
|
ATP synthase CF1 alpha subunit
Pssm-ID: 176999 [Multi-domain] Cd Length: 485 Bit Score: 135.48 E-value: 4.81e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 79 ILPGAKVTPlTGE-SGLPVGMELLGRVIDGVGNPLDGLGPIYT-EHRAsfnAQPMNP--LARKPITEPLDVGLKAINGLL 154
Cdd:CHL00059 61 IQEGSSVKA-TGKiAQIPVSEAYLGRVVNALAKPIDGKGEISAsESRL---IESPAPgiISRRSVYEPLQTGLIAIDSMI 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 155 TVGKGQRIGLFAGSGVGK-SVTLGMMTRGTTAQVVVVGL-IGERGREVKEfIEEILGEDGR-KRSVVVAAPADASPLMRL 231
Cdd:CHL00059 137 PIGRGQRELIIGDRQTGKtAVATDTILNQKGQNVICVYVaIGQKASSVAQ-VVTTLQERGAmEYTIVVAETADSPATLQY 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 232 KGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGPQ--QGSITAF 309
Cdd:CHL00059 216 LAPYTGAALAEYFMYRGRHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQlgEGSMTAL 295
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 746387340 310 FTVLTEGDDLQDPIADASRAILDGHIVLSREMADAGHYPAIDVEKSVSRV 359
Cdd:CHL00059 296 PIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRV 345
|
|
| PRK04192 |
PRK04192 |
V-type ATP synthase subunit A; Provisional |
136-351 |
3.61e-33 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 235248 [Multi-domain] Cd Length: 586 Bit Score: 131.44 E-value: 3.61e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 136 RKPITEPLDVGLKAINGLLTVGKGqriGLFA---GSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEI--LgE 210
Cdd:PRK04192 204 KLPPVEPLITGQRVIDTFFPVAKG---GTAAipgPFGSGKTVTQHQLAKWADADIVIYVGCGERGNEMTEVLEEFpeL-I 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 211 D---GRK---RSVVVA-------APADASplmrlkgCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPA 277
Cdd:PRK04192 280 DpktGRPlmeRTVLIAntsnmpvAAREAS-------IYTGITIAEYYRDMGYDVLLMADSTSRWAEALREISGRLEEMPG 352
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 746387340 278 TKGYPPSVFAKLPALVERAG----NGGPqQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMADAGHYPAID 351
Cdd:PRK04192 353 EEGYPAYLASRLAEFYERAGrvktLGGE-EGSVTIIGAVSPPGGDFSEPVTQNTLRIVKVFWALDAELADRRHFPAIN 429
|
|
| V-ATPase_V1_B |
TIGR01040 |
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is ... |
59-360 |
6.44e-30 |
|
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273410 [Multi-domain] Cd Length: 466 Bit Score: 120.98 E-value: 6.44e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 59 EVVGFSGDNLFLMPSEQITGILPGAKVTPLTGES-GLPVGMELLGRVIDGVGNPLDGLGPIYTEHRASFNAQPMNPLARK 137
Cdd:TIGR01040 40 QVLEVSGNKAVVQVFEGTSGIDAKKTTCEFTGDIlRTPVSEDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARI 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 138 PITEPLDVGLKAINGLLTVGKGQRIGLFAGSGV------GKSVTLGMMTRGTTAQV---------VVVGLIGERgREVKE 202
Cdd:TIGR01040 120 YPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLphneiaAQICRQAGLVKLPTKDVhdghednfaIVFAAMGVN-METAR 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 203 FIEEILGEDGRKRSVVVAAPADASPLM-RLKGCQTALTIAEYFRDQ-GLDVLLLMDSLTRFAQAQREIALSVGEPPATKG 280
Cdd:TIGR01040 199 FFKQDFEENGSMERVCLFLNLANDPTIeRIITPRLALTTAEYLAYQcEKHVLVILTDMSSYADALREVSAAREEVPGRRG 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 281 YPPSVFAKLPALVERAGNGGPQQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMADAGHYPAIDVEKSVSRVM 360
Cdd:TIGR01040 279 FPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM 358
|
|
| PRK02118 |
PRK02118 |
V-type ATP synthase subunit B; Provisional |
25-376 |
4.70e-29 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 179373 [Multi-domain] Cd Length: 436 Bit Score: 118.21 E-value: 4.70e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 25 KLVRVIG--LTLEATGCRapIGSLCLVETMTGQMEAEVVGFSGDNLFLMPSEQITGILPGAKVTPLTGESGLPVGMELLG 102
Cdd:PRK02118 7 KITDITGnvITVEAEGVG--YGELATVERKDGSSLAQVIRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSESLLG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 103 RVIDGVGNPLDGlGPIYTEHRASFNAQPMNPLARKPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKSVTLGMMTRG 182
Cdd:PRK02118 85 RRFNGSGKPIDG-GPELEGEPIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLARIALQ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 183 TTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFR-DQGLDVLLLMDSLTRF 261
Cdd:PRK02118 164 AEADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEKFAlEGKKKVLVLLTDMTNF 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 262 AQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNgGPQQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREm 341
Cdd:PRK02118 244 ADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVD-FEDGGSITIIAVTTMPGDDVTHPVPDNTGYITEGQFYLRRG- 321
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 746387340 342 adaghypAIDVEKSVSR----VMPQITTDEH-VLMSKAVR 376
Cdd:PRK02118 322 -------RIDPFGSLSRlkqlVIGKKTREDHgDLMNAMIR 354
|
|
| PRK07165 |
PRK07165 |
ATP F0F1 synthase subunit alpha; |
66-384 |
2.24e-24 |
|
ATP F0F1 synthase subunit alpha;
Pssm-ID: 235951 [Multi-domain] Cd Length: 507 Bit Score: 105.44 E-value: 2.24e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 66 DNLFLMPSEQITGILPGAKVTPLTGESGLPVGMELLGRVIDGVGNPL-----DGLGPIYTEHRASFNAQPMNPLARKPIT 140
Cdd:PRK07165 45 DKAYLLINNEKGKIKINDELIELNNTNKVKTSKEYFGKIIDIDGNIIypeaqNPLSKKFLPNTSSIFNLAHGLMTVKTLN 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 141 EPLDVGLKAINGLLTVGKGQRIGLFAGSGVGK-SVTLGMM--TRGTTAQVVVVGlIGERGREVKeFIEEILGE-DGRKRS 216
Cdd:PRK07165 125 EQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKtHIALNTIinQKNTNVKCIYVA-IGQKRENLS-RIYETLKEhDALKNT 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 217 VVVAAPADaSPLMRLKGCQTALTIAE---YFRDqgldVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALV 293
Cdd:PRK07165 203 IIIDAPST-SPYEQYLAPYVAMAHAEnisYNDD----VLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLL 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 294 ERAGN--GGPqqgSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMADAGHYPAIDVEKSVSRVMPQIttdEHVLM 371
Cdd:PRK07165 278 ERAGKfkNRK---TITALPILQTVDNDITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGSSV---QSKTI 351
|
330
....*....|...
gi 746387340 372 SKAVRQILSICRK 384
Cdd:PRK07165 352 TKVAGEISKIYRA 364
|
|
| ATP-synt_flagellum-secretory_path_III_N |
cd18117 |
Flagellum-specific ATP synthase, N-terminal domain; The N-terminal domain of the ... |
24-88 |
1.01e-22 |
|
Flagellum-specific ATP synthase, N-terminal domain; The N-terminal domain of the flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The FliI ATPase is the soluble export component that drives flagellar protein export, and it shows extensive similarity to the alpha and beta subunits of F1-ATP synthase. Although they both are proton driven rotary molecular devices, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens, such as Salmonella and Chlamydia, also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 349741 [Multi-domain] Cd Length: 70 Bit Score: 91.05 E-value: 1.01e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 746387340 24 GKLVRVIGLTLEATGCRAPIGSLCLVETMTGQM-EAEVVGFSGDNLFLMPSEQITGILPGAKVTPL 88
Cdd:cd18117 3 GRVVRVVGLLLEAVGPQAPIGELCLIETADGLSiLAEVVGFSGEKVLLMPLGELSGLSPGARVVPL 68
|
|
| PRK14698 |
PRK14698 |
V-type ATP synthase subunit A; Provisional |
173-357 |
4.18e-22 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 184795 [Multi-domain] Cd Length: 1017 Bit Score: 99.33 E-value: 4.18e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 173 SVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEI-------LGEDGRKRSVVVAAPADASPLMRLKGCQTALTIAEYFR 245
Cdd:PRK14698 670 TVTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFpklkdpkTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFR 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 246 DQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAG-----NGGPQQGSITAFFTVLTEGDDLQ 320
Cdd:PRK14698 750 DMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGrvvtlGSDYRVGSVSVIGAVSPPGGDFS 829
|
170 180 190
....*....|....*....|....*....|....*..
gi 746387340 321 DPIADASRAILDGHIVLSREMADAGHYPAIDVEKSVS 357
Cdd:PRK14698 830 EPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYS 866
|
|
| PTZ00185 |
PTZ00185 |
ATPase alpha subunit; Provisional |
74-359 |
8.17e-21 |
|
ATPase alpha subunit; Provisional
Pssm-ID: 140212 [Multi-domain] Cd Length: 574 Bit Score: 95.11 E-value: 8.17e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 74 EQITGILPGAKVTPLTGESGLPVGMELLGRVIdgvgNPLDGLGPI--YTEHRASFNAQPM---------NPLARKPITEP 142
Cdd:PTZ00185 97 DNITEVQSGQKVMATGKLLYIPVGAGVLGKVV----NPLGHEVPVglLTRSRALLESEQTlgkvdagapNIVSRSPVNYN 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 143 LDVGLKAINGLLTVGKGQRIGLFAGSGVGKS----------VTLGMMTRGTTAQVVVVGLIGERGREVKEfIEEILGEDG 212
Cdd:PTZ00185 173 LLTGFKAVDTMIPIGRGQRELIVGDRQTGKTsiavstiinqVRINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYG 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 213 RKRSVVVAAPADASPL-MRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPA 291
Cdd:PTZ00185 252 ALRYTTVMAATAAEPAgLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSR 331
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 292 LVERAGNGGPQQ--GSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMADAGHYPAIDVEKSVSRV 359
Cdd:PTZ00185 332 LLERAAMLSPGKggGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRV 401
|
|
| T3SS_ATPase_C |
pfam18269 |
T3SS EscN ATPase C-terminal domain; This is the C-terminal domain of the EscN protein family ... |
364-433 |
8.77e-21 |
|
T3SS EscN ATPase C-terminal domain; This is the C-terminal domain of the EscN protein family of ATPases that form part of the Type III secretion system (T3SS) present in Escherichia coli. T3SS is a macromolecular complex that creates a syringe-like apparatus extending from the bacterial cytosol across three membranes to the eukaryotic cytosol. This process is essential for pathogenicity. EscN is a functionally unique ATPase that provides an inner-membrane recognition gate for the T3SS chaperone-virulence effector complexes as well as a potential source of energy for their subsequent secretion.The C-terminal domain of T3SS ATPases mediates binding with multiple contact points along the chaperone.
Pssm-ID: 465691 [Multi-domain] Cd Length: 70 Bit Score: 85.56 E-value: 8.77e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 364 TTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQAIDSAFTLKPKLDAYLQQQMKETVPYAMCVNML 433
Cdd:pfam18269 1 VSPEHLQAARRLRELLATYQENEDLIRIGAYQAGSDPEIDEAIAKRPAINAFLRQGVDEPVSFEETLAQL 70
|
|
| rho |
TIGR00767 |
transcription termination factor Rho; This RNA helicase, the transcription termination factor ... |
110-384 |
1.82e-14 |
|
transcription termination factor Rho; This RNA helicase, the transcription termination factor Rho, occurs in nearly all bacteria but is missing from the Cyanobacteria, the Mollicutes (Mycoplasmas), and various Lactobacillales including Streptococcus. It is also missing, of course, from the Archaea, which also lack Nus factors. Members of this family from Micrococcus luteus, Mycobacterium tuberculosis, and related species have a related but highly variable long, highly charged insert near the amino end. Members of this family differ in the specificity of RNA binding. [Transcription, Transcription factors]
Pssm-ID: 162030 [Multi-domain] Cd Length: 415 Bit Score: 74.72 E-value: 1.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 110 NPLDGLGPIYTEHRASF-NAQPMNPLAR-KPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQ- 186
Cdd:TIGR00767 117 ESVNGDDPEKAKNRVLFeNLTPLYPNERlRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNh 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 187 ---VVVVGLIGERGREVKEFIEEILGEdgrkrsvVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQ 263
Cdd:TIGR00767 197 pevELIVLLIDERPEEVTDMQRSVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLAR 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 264 AQREIALSVGEPpATKGYPPSVFAKLPALVERAGN--GGpqqGSITAFFTVLTE-GDDLQDPIADASRAILDGHIVLSRE 340
Cdd:TIGR00767 270 AYNTVTPASGKV-LSGGVDANALHRPKRFFGAARNieEG---GSLTIIATALIDtGSRMDEVIFEEFKGTGNMELHLDRK 345
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 746387340 341 MADAGHYPAIDVEKSVSRvmpqittDEHVLMSKAVRQILSICRK 384
Cdd:TIGR00767 346 LADRRIFPAIDIKKSGTR-------KEELLLTPEELQKIWVLRK 382
|
|
| PRK12608 |
PRK12608 |
transcription termination factor Rho; Provisional |
102-358 |
2.36e-14 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237150 [Multi-domain] Cd Length: 380 Bit Score: 74.35 E-value: 2.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 102 GRVIDGVgNPLDGLGPIYTEHRASF-NAQPMNPLAR-KPITEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKSVTLGMM 179
Cdd:PRK12608 75 YRVLVRV-DSVNGTDPEKLARRPHFdDLTPLHPRERlRLETGSDDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQI 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 180 TRGTTA-----QVVVVgLIGERGREVKEFIEEILGEdgrkrsvVVAAPADASPLMRLKGCQTALTIAEYFRDQGLDVLLL 254
Cdd:PRK12608 154 AAAVAAnhpevHLMVL-LIDERPEEVTDMRRSVKGE-------VYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVIL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 255 MDSLTRFAQAQREIALSVG-------EPPATKGyPPSVFAKlpalVERAGNGgpqqGSITAFFTVLTE-GDDLQDPIADA 326
Cdd:PRK12608 226 LDSLTRLARAYNNEVESSGrtlsggvDARALQR-PKRLFGA----ARNIEEG----GSLTIIATALVDtGSRMDEVIFEE 296
|
250 260 270
....*....|....*....|....*....|..
gi 746387340 327 SRAILDGHIVLSREMADAGHYPAIDVEKSVSR 358
Cdd:PRK12608 297 FKGTGNMEIVLDRELADKRVFPAIDIAKSGTR 328
|
|
| rho_factor_C |
cd01128 |
C-terminal ATP binding domain of transcription termination factor rho; Transcription ... |
156-384 |
1.05e-13 |
|
C-terminal ATP binding domain of transcription termination factor rho; Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal oligonucleotide/oligosaccharide binding fold (OB-fold) domain which binds cysteine-rich nucleotides, and a C-terminal ATP binding domain. This alignment is of the C-terminal ATP binding domain.
Pssm-ID: 410872 [Multi-domain] Cd Length: 249 Bit Score: 70.70 E-value: 1.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 156 VGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQ----VVVVGLIGERGREVKEFIEEILGEdgrkrsvVVAAPADASPLMRL 231
Cdd:cd01128 13 IGKGQRGLIVAPPKAGKTTLLQNIANAIAKNhpevELIVLLIDERPEEVTDMRRSVKGE-------VVASTFDEPPERHV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 232 KGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIAlsvgePPATKGYPPSVFAKlpAL--------VERAGNGGpqq 303
Cdd:cd01128 86 QVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVV-----PSSGKTLSGGVDAN--ALhkpkrffgAARNIEEG--- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 304 GSITAFFTVLTE-GDDLQDPIADASRAILDGHIVLSREMADAGHYPAIDVEKSVSRvmpqittDEHVLMSKAVRQILSIC 382
Cdd:cd01128 156 GSLTIIATALVDtGSRMDEVIFEEFKGTGNMELVLDRKLAEKRIFPAIDILKSGTR-------KEELLLTPEELQKIWLL 228
|
..
gi 746387340 383 RK 384
Cdd:cd01128 229 RR 230
|
|
| ATP-synt_flagellum-secretory_path_III_C |
cd18114 |
Flagellum-specific ATP synthase, C-terminal domain; The C-terminal domain of the ... |
376-427 |
1.83e-11 |
|
Flagellum-specific ATP synthase, C-terminal domain; The C-terminal domain of the flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The flagellum-specific ATPase FliI is the soluble export component that drives flagellar protein export, and it shows extensive similarity to the alpha and beta subunits of FoF1-ATP synthase. Although they both are proton driven rotary molecular devices, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 349749 [Multi-domain] Cd Length: 71 Bit Score: 59.54 E-value: 1.83e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 746387340 376 RQILSICRKNQDLVSIGAYKPGTDQAIDSAFTLKPKLDAYLQQQMKETVPYA 427
Cdd:cd18114 9 RELMSTYQENEDLIRIGAYKKGSDPEVDEAIRLKPQIEAFLKQGLNEKAPLE 60
|
|
| rho |
PRK09376 |
transcription termination factor Rho; Provisional |
156-384 |
6.56e-08 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 236490 [Multi-domain] Cd Length: 416 Bit Score: 54.38 E-value: 6.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 156 VGKGQRiGLF-AGSGVGKSVTLGMMTRGTTAQ----VVVVGLIGERGREVKEFIEEILGEdgrkrsvVVAAPADASPLMR 230
Cdd:PRK09376 166 IGKGQR-GLIvAPPKAGKTVLLQNIANSITTNhpevHLIVLLIDERPEEVTDMQRSVKGE-------VVASTFDEPAERH 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 231 LKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIA------LSVG-EPPATkgYPPSVF---AklpalveRAGNGG 300
Cdd:PRK09376 238 VQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVpssgkvLSGGvDANAL--HRPKRFfgaA-------RNIEEG 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746387340 301 pqqGSITAFFTVLTE-GDDLQDPIADASRAILDGHIVLSREMADAGHYPAIDVEKSVSRvmpqittDEHVLMSKAVRQIL 379
Cdd:PRK09376 309 ---GSLTIIATALIDtGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTR-------KEELLLSPEELQKV 378
|
....*
gi 746387340 380 SICRK 384
Cdd:PRK09376 379 WILRK 383
|
|
| ATP-synt_F1_V1_A1_AB_FliI_N |
cd01426 |
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, ... |
24-91 |
1.08e-05 |
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ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, N-terminal domain; The alpha and beta (or A and B) subunits are primarily found in the F1, V1, and A1 complexes of the F-, V- and A-type family of ATPases with rotary motors. These ion-transporting rotary ATPases are composed of two linked multi-subunit complexes: the F1, V1, or A1 complex which contains three copies each of the alpha and beta subunits that form the soluble catalytic core involved in ATP synthesis/hydrolysis, and the Fo, Vo, or Ao complex which forms the membrane-embedded proton pore. The F-ATP synthases (also called FoF1-ATPases) are found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. F-ATPases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. The A-ATP synthases (AoA1-ATPases), a different class of proton-translocating ATP synthases, are found in archaea and function like F-ATP synthases. Structurally, however, the A-ATP synthases are more closely related to the V-ATP synthases (vacuolar VoV1-ATPases), which are a proton-translocating ATPase responsible for acidification of eukaryotic intracellular compartments and for ATP synthesis in archaea and some eubacteria. Collectively, F-, V-, and A-type synthases can function in both ATP synthesis and hydrolysis modes. This family also includes the flagellum-specific ATPase/type III secretory pathway virulence-related protein, which shows extensive similarity to the alpha and beta subunits of F1-ATP synthase.
Pssm-ID: 349738 [Multi-domain] Cd Length: 73 Bit Score: 43.07 E-value: 1.08e-05
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gi 746387340 24 GKLVRVIGLTLEATGCRAP-IGSLCLVETMTGQME----AEVVGFSGDNLFLMPSEQITGILPGAKVTPlTGE 91
Cdd:cd01426 2 GRVIRVNGPLVEAELEGEVaIGEVCEIERGDGNNEtvlkAEVIGFRGDRAILQLFESTRGLSRGALVEP-TGR 73
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