MULTISPECIES: flagellar brake protein [Pseudoalteromonas]
Protein Classification
PilZ domain-containing protein( domain architecture ID 1004651)
PilZ domain-containing protein is involved in binding bis-(3'-5')-cyclic dimeric GMP (c-di-GMP), a ubiquitous second messenger that regulates cell surface-associated traits in bacteria; similar to Vibrio cholerae cyclic di-GMP binding protein VCA0042
List of domain hits
| Name | Accession | Description | Interval | E-value | ||||
| YcgR super family | cl35023 | Cyclic di-GMP-binding flagellar brake protein FlgZ/YcgR, contains PilZNR(YcgR) and PilZ ... |
19-182 | 1.61e-09 | ||||
Cyclic di-GMP-binding flagellar brake protein FlgZ/YcgR, contains PilZNR(YcgR) and PilZ domains [Cell motility]; The actual alignment was detected with superfamily member COG5581: Pssm-ID: 444320 [Multi-domain] Cd Length: 205 Bit Score: 55.38 E-value: 1.61e-09
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| Name | Accession | Description | Interval | E-value | ||||
| YcgR | COG5581 | Cyclic di-GMP-binding flagellar brake protein FlgZ/YcgR, contains PilZNR(YcgR) and PilZ ... |
19-182 | 1.61e-09 | ||||
Cyclic di-GMP-binding flagellar brake protein FlgZ/YcgR, contains PilZNR(YcgR) and PilZ domains [Cell motility]; Pssm-ID: 444320 [Multi-domain] Cd Length: 205 Bit Score: 55.38 E-value: 1.61e-09
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| PilZNR | pfam12945 | Flagellar protein YcgR; This domain is found N terminal to pfam07238. Proteins which contain ... |
13-99 | 8.60e-09 | ||||
Flagellar protein YcgR; This domain is found N terminal to pfam07238. Proteins which contain YcgR domains are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias. This family contains members not captured by pfam07317. This domain has a beta-barrel fold PilZ domains and lack the C-terminal alpha- helix. Pssm-ID: 463758 Cd Length: 81 Bit Score: 50.66 E-value: 8.60e-09
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| Name | Accession | Description | Interval | E-value | ||||
| YcgR | COG5581 | Cyclic di-GMP-binding flagellar brake protein FlgZ/YcgR, contains PilZNR(YcgR) and PilZ ... |
19-182 | 1.61e-09 | ||||
Cyclic di-GMP-binding flagellar brake protein FlgZ/YcgR, contains PilZNR(YcgR) and PilZ domains [Cell motility]; Pssm-ID: 444320 [Multi-domain] Cd Length: 205 Bit Score: 55.38 E-value: 1.61e-09
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| PilZNR | pfam12945 | Flagellar protein YcgR; This domain is found N terminal to pfam07238. Proteins which contain ... |
13-99 | 8.60e-09 | ||||
Flagellar protein YcgR; This domain is found N terminal to pfam07238. Proteins which contain YcgR domains are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias. This family contains members not captured by pfam07317. This domain has a beta-barrel fold PilZ domains and lack the C-terminal alpha- helix. Pssm-ID: 463758 Cd Length: 81 Bit Score: 50.66 E-value: 8.60e-09
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| PilZ | pfam07238 | PilZ domain; PilZ is a c-di-GMP binding domain found in widespread cytoplasmic receptors, ... |
111-194 | 4.30e-07 | ||||
PilZ domain; PilZ is a c-di-GMP binding domain found in widespread cytoplasmic receptors, which is involved in regulation of motility, biofilm formation and virulence of many bacterial pathogens. This domain binds c-di-GMP through RXXXR and [D/N]hSXXG motifs, however, some PilZ domains lack these motifs and do not bind c-di-GMP. Proteins which contain PilZ are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias. This is the canonical PilZ domain whose structure consists of six beta-strands that form a beta barrel, followed by a long C-terminal alpha-helix. Pssm-ID: 399904 Cd Length: 102 Bit Score: 46.73 E-value: 4.30e-07
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