|
Name |
Accession |
Description |
Interval |
E-value |
| GlpR |
COG1349 |
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ... |
7-264 |
4.03e-67 |
|
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];
Pssm-ID: 440960 [Multi-domain] Cd Length: 254 Bit Score: 208.45 E-value: 4.03e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 7 LPRTRQAELAKRILSEGHMTVADLAAEFDVSADTIRRDLYVLDKAGTIVRAHGGAMnPLSIAKPDTRVDVRLKFKNDEKI 86
Cdd:COG1349 2 LAEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAV-LVSSAAAEPPFAERETLNAEEKR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 87 AIAKTVADLIPDQSTLIVNGGTTTLQLAHALRDHRDLTIATNNLRFPQIIPANCFQDLYVFGGRVRSQMETTVGKLELph 166
Cdd:COG1349 81 AIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAERPNIEVILLGGELRPSSGSLVGPLAE-- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 167 GDLTQpvdFKADYAVIGVGGI-VTDGYVTSNLAEGGMIAEMIAHSAIPIIVADDTKFNRSLFANIGPLSVAKYLVTNAEP 245
Cdd:COG1349 159 EALRR---FRADKAFLGASGIdAEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGP 235
|
250
....*....|....*....
gi 746639152 246 PEDLNTALISNGVKVVIAS 264
Cdd:COG1349 236 PPELLEALEEAGVEVIVAE 254
|
|
| PRK10906 |
PRK10906 |
DeoR/GlpR family transcriptional regulator; |
14-260 |
1.64e-33 |
|
DeoR/GlpR family transcriptional regulator;
Pssm-ID: 182827 [Multi-domain] Cd Length: 252 Bit Score: 122.27 E-value: 1.64e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 14 ELAKRilsEGHMTVADLAAEFDVSADTIRRDLYVLDKAGTIVRAHGGAMNPLSiaKPDTRVDVRLKFKNDEKIAIAKTVA 93
Cdd:PRK10906 12 ELVKQ---QGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILRHHGGAALPSS--SVNTPWHDRKATQTEEKERIARKVA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 94 DLIPDQSTLIVNGGTTTLQLAHALRDHRDLTIATNNLRFPQIIPANCFQDLYVFGGRVRSQMETTVGKLELPHgdLTQpv 173
Cdd:PRK10906 87 SQIPNGATLFIDIGTTPEAVAHALLNHSNLRIVTNNLNVANTLMAKEDFRIILAGGELRSRDGGIIGEATLDF--ISQ-- 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 174 dFKADYAVIGVGGIVTDGYVTS-NLAEGGMIAEMIAHSAIPIIVADDTKFNRSLFANIGPLSVAKYLVTNAEPPEDLNTA 252
Cdd:PRK10906 163 -FRLDFGILGISGIDSDGSLLEfDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTDQLPPASVMQV 241
|
....*...
gi 746639152 253 LISNGVKV 260
Cdd:PRK10906 242 IEDHHVQL 249
|
|
| DeoRC |
pfam00455 |
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ... |
83-241 |
2.36e-32 |
|
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395365 Cd Length: 160 Bit Score: 116.46 E-value: 2.36e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 83 DEKIAIAKTVADLIPDQSTLIVNGGTTTLQLAHALRDHRDLTIATNNL-------RFPQIipancfqDLYVFGGRVRSQM 155
Cdd:pfam00455 4 EEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLnianelsEKPDI-------EVILLGGEVRPKT 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 156 ETTVGKLELphGDLTQpvdFKADYAVIGVGGIVTDGYVT-SNLAEGGMIAEMIAHSAIPIIVADDTKFNRSLFANIGPLS 234
Cdd:pfam00455 77 GAFVGPLAE--EFLRQ---FNVDKAFIGANGIDLEGGLTtSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLE 151
|
....*..
gi 746639152 235 VAKYLVT 241
Cdd:pfam00455 152 DIDALIT 158
|
|
| TranRegGlpR_Halo |
NF041397 |
HTH-type transcriptional regulator GlpR; |
7-264 |
1.90e-29 |
|
HTH-type transcriptional regulator GlpR;
Pssm-ID: 469288 [Multi-domain] Cd Length: 253 Bit Score: 111.54 E-value: 1.90e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 7 LPRTRQAELAKRILSEGHMTVADLAAEFDVSADTIRRDLYVLDKAGTIVRAHGGAMNPLSIA--KPDTRVDVRlkfkN-D 83
Cdd:NF041397 2 LPEERKRKIVELVTERDGCSVEELADELDVSKATIRRDLRDLEDRGLIERSHGGAVPVTSVGreRSYGQREVQ----NlE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 84 EKIAIAKTVADLIPDQSTLIVNGGTTTLQLAHALRDHRDLTIATNNlrfPQIIP--ANCFQDLYVFGGRVRSQMETTVGk 161
Cdd:NF041397 78 AKRAIAERAVEEIHDGQVVFFDAGTTTMEVAKRVPTDGSFLAVTNS---PLLALelAERDGEVKLTGGTLRPRTRALVG- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 162 lelPHGDltqpvDF----KADYAVIGVGGI-VTDGYVTSNLAEGGMIAEMIAHSAIPIIVADDTKFNRSLFANIGPLSVA 236
Cdd:NF041397 154 ---PTAE-----SFmertNFDLLFLGTNGIdPDGGLTTPNEDEARMKELMVENAKRVVLVADGSKFGERSFVRFADLDDV 225
|
250 260
....*....|....*....|....*...
gi 746639152 237 KYLVTNAEPPEDLNTALISNGVKVVIAS 264
Cdd:NF041397 226 DLFVTDGALPEELREAFEEAGVEVVDVD 253
|
|
| AgaR |
NF040755 |
transcriptional repressor AgaR; |
11-263 |
1.55e-28 |
|
transcriptional repressor AgaR;
Pssm-ID: 468715 [Multi-domain] Cd Length: 256 Bit Score: 108.90 E-value: 1.55e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 11 RQAELAKRILSEGHMTVADLAAEFDVSADTIRRDLYVLDKAGTIVRAHGGAM-NPLSIAKPDTRVDVRLKFKNDEKIAIA 89
Cdd:NF040755 7 RREQIIQRLRQQGSVQVEDLSALFGVSTVTIRNDLAFLEKQGIAVRAYGGALiNDGFIPGAEPSVEDKSRLNTAVKRLIA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 90 KTVADLIPDQSTLIVNGGTTTLQLAHALRDHRDLTIATNNLRFpqiipANCFQ-----DLYVFGGRVRSQMETTVGklel 164
Cdd:NF040755 87 AAAAELIKPGDRVILDSGTTTYEIARHLKQHQDVVVMTNGLNV-----ANELLeaegvEVLMTGGHLRRQSLSFYG---- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 165 PHGDlTQPVDFKADYAVIGVGGIVTD-GYVTSNLAEGGM------IAEMIahsaipIIVADDTKFNRSLFANIGPLSVAK 237
Cdd:NF040755 158 DQAE-QSLQNYHFDKLFLGVDGFDLErGITTHNEDEARLnrrmceVAERI------IAVTDSSKFGRSSLHKIRDTGRID 230
|
250 260
....*....|....*....|....*.
gi 746639152 238 YLVTNAEPPEDLNTALISNGVKVVIA 263
Cdd:NF040755 231 TLITDSGIPEEYLQGLRKLGVEVILV 256
|
|
| HTH_DEOR |
smart00420 |
helix_turn_helix, Deoxyribose operon repressor; |
11-61 |
1.49e-12 |
|
helix_turn_helix, Deoxyribose operon repressor;
Pssm-ID: 197714 [Multi-domain] Cd Length: 53 Bit Score: 60.70 E-value: 1.49e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 746639152 11 RQAELAKRILSEGHMTVADLAAEFDVSADTIRRDLYVLDKAGTIVRAHGGA 61
Cdd:smart00420 1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGA 51
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| GlpR |
COG1349 |
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ... |
7-264 |
4.03e-67 |
|
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];
Pssm-ID: 440960 [Multi-domain] Cd Length: 254 Bit Score: 208.45 E-value: 4.03e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 7 LPRTRQAELAKRILSEGHMTVADLAAEFDVSADTIRRDLYVLDKAGTIVRAHGGAMnPLSIAKPDTRVDVRLKFKNDEKI 86
Cdd:COG1349 2 LAEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAV-LVSSAAAEPPFAERETLNAEEKR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 87 AIAKTVADLIPDQSTLIVNGGTTTLQLAHALRDHRDLTIATNNLRFPQIIPANCFQDLYVFGGRVRSQMETTVGKLELph 166
Cdd:COG1349 81 AIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAERPNIEVILLGGELRPSSGSLVGPLAE-- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 167 GDLTQpvdFKADYAVIGVGGI-VTDGYVTSNLAEGGMIAEMIAHSAIPIIVADDTKFNRSLFANIGPLSVAKYLVTNAEP 245
Cdd:COG1349 159 EALRR---FRADKAFLGASGIdAEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGP 235
|
250
....*....|....*....
gi 746639152 246 PEDLNTALISNGVKVVIAS 264
Cdd:COG1349 236 PPELLEALEEAGVEVIVAE 254
|
|
| PRK10906 |
PRK10906 |
DeoR/GlpR family transcriptional regulator; |
14-260 |
1.64e-33 |
|
DeoR/GlpR family transcriptional regulator;
Pssm-ID: 182827 [Multi-domain] Cd Length: 252 Bit Score: 122.27 E-value: 1.64e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 14 ELAKRilsEGHMTVADLAAEFDVSADTIRRDLYVLDKAGTIVRAHGGAMNPLSiaKPDTRVDVRLKFKNDEKIAIAKTVA 93
Cdd:PRK10906 12 ELVKQ---QGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILRHHGGAALPSS--SVNTPWHDRKATQTEEKERIARKVA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 94 DLIPDQSTLIVNGGTTTLQLAHALRDHRDLTIATNNLRFPQIIPANCFQDLYVFGGRVRSQMETTVGKLELPHgdLTQpv 173
Cdd:PRK10906 87 SQIPNGATLFIDIGTTPEAVAHALLNHSNLRIVTNNLNVANTLMAKEDFRIILAGGELRSRDGGIIGEATLDF--ISQ-- 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 174 dFKADYAVIGVGGIVTDGYVTS-NLAEGGMIAEMIAHSAIPIIVADDTKFNRSLFANIGPLSVAKYLVTNAEPPEDLNTA 252
Cdd:PRK10906 163 -FRLDFGILGISGIDSDGSLLEfDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTDQLPPASVMQV 241
|
....*...
gi 746639152 253 LISNGVKV 260
Cdd:PRK10906 242 IEDHHVQL 249
|
|
| DeoRC |
pfam00455 |
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ... |
83-241 |
2.36e-32 |
|
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395365 Cd Length: 160 Bit Score: 116.46 E-value: 2.36e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 83 DEKIAIAKTVADLIPDQSTLIVNGGTTTLQLAHALRDHRDLTIATNNL-------RFPQIipancfqDLYVFGGRVRSQM 155
Cdd:pfam00455 4 EEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLnianelsEKPDI-------EVILLGGEVRPKT 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 156 ETTVGKLELphGDLTQpvdFKADYAVIGVGGIVTDGYVT-SNLAEGGMIAEMIAHSAIPIIVADDTKFNRSLFANIGPLS 234
Cdd:pfam00455 77 GAFVGPLAE--EFLRQ---FNVDKAFIGANGIDLEGGLTtSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLE 151
|
....*..
gi 746639152 235 VAKYLVT 241
Cdd:pfam00455 152 DIDALIT 158
|
|
| TranRegGlpR_Halo |
NF041397 |
HTH-type transcriptional regulator GlpR; |
7-264 |
1.90e-29 |
|
HTH-type transcriptional regulator GlpR;
Pssm-ID: 469288 [Multi-domain] Cd Length: 253 Bit Score: 111.54 E-value: 1.90e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 7 LPRTRQAELAKRILSEGHMTVADLAAEFDVSADTIRRDLYVLDKAGTIVRAHGGAMNPLSIA--KPDTRVDVRlkfkN-D 83
Cdd:NF041397 2 LPEERKRKIVELVTERDGCSVEELADELDVSKATIRRDLRDLEDRGLIERSHGGAVPVTSVGreRSYGQREVQ----NlE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 84 EKIAIAKTVADLIPDQSTLIVNGGTTTLQLAHALRDHRDLTIATNNlrfPQIIP--ANCFQDLYVFGGRVRSQMETTVGk 161
Cdd:NF041397 78 AKRAIAERAVEEIHDGQVVFFDAGTTTMEVAKRVPTDGSFLAVTNS---PLLALelAERDGEVKLTGGTLRPRTRALVG- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 162 lelPHGDltqpvDF----KADYAVIGVGGI-VTDGYVTSNLAEGGMIAEMIAHSAIPIIVADDTKFNRSLFANIGPLSVA 236
Cdd:NF041397 154 ---PTAE-----SFmertNFDLLFLGTNGIdPDGGLTTPNEDEARMKELMVENAKRVVLVADGSKFGERSFVRFADLDDV 225
|
250 260
....*....|....*....|....*...
gi 746639152 237 KYLVTNAEPPEDLNTALISNGVKVVIAS 264
Cdd:NF041397 226 DLFVTDGALPEELREAFEEAGVEVVDVD 253
|
|
| AgaR |
NF040755 |
transcriptional repressor AgaR; |
11-263 |
1.55e-28 |
|
transcriptional repressor AgaR;
Pssm-ID: 468715 [Multi-domain] Cd Length: 256 Bit Score: 108.90 E-value: 1.55e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 11 RQAELAKRILSEGHMTVADLAAEFDVSADTIRRDLYVLDKAGTIVRAHGGAM-NPLSIAKPDTRVDVRLKFKNDEKIAIA 89
Cdd:NF040755 7 RREQIIQRLRQQGSVQVEDLSALFGVSTVTIRNDLAFLEKQGIAVRAYGGALiNDGFIPGAEPSVEDKSRLNTAVKRLIA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 90 KTVADLIPDQSTLIVNGGTTTLQLAHALRDHRDLTIATNNLRFpqiipANCFQ-----DLYVFGGRVRSQMETTVGklel 164
Cdd:NF040755 87 AAAAELIKPGDRVILDSGTTTYEIARHLKQHQDVVVMTNGLNV-----ANELLeaegvEVLMTGGHLRRQSLSFYG---- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 165 PHGDlTQPVDFKADYAVIGVGGIVTD-GYVTSNLAEGGM------IAEMIahsaipIIVADDTKFNRSLFANIGPLSVAK 237
Cdd:NF040755 158 DQAE-QSLQNYHFDKLFLGVDGFDLErGITTHNEDEARLnrrmceVAERI------IAVTDSSKFGRSSLHKIRDTGRID 230
|
250 260
....*....|....*....|....*.
gi 746639152 238 YLVTNAEPPEDLNTALISNGVKVVIA 263
Cdd:NF040755 231 TLITDSGIPEEYLQGLRKLGVEVILV 256
|
|
| srlR |
PRK10434 |
DNA-binding transcriptional repressor; |
8-263 |
4.28e-27 |
|
DNA-binding transcriptional repressor;
Pssm-ID: 182457 [Multi-domain] Cd Length: 256 Bit Score: 105.15 E-value: 4.28e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 8 PRTRQAELAKRILSEGHMTVADLAAEFDVSADTIRRDLYVLDKAGTIVRAHGGAMnpLSIAKPDTRVDVRLKFKNDEKIA 87
Cdd:PRK10434 3 PRQRQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVV--LNKEESDPPIDHKTLINTHKKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 88 IAKTVADLIPDQSTLIVNGGTTTLQLAHALRDHRDLTIATNNLR-FPQIIPANCFQDLYVFGGRVRSQMETTvgklelpH 166
Cdd:PRK10434 81 IAEAAVSLIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHiVNALSELDNEQTILMPGGTFRKKSASF-------H 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 167 GDLTQPV--DFKADYAVIGVGGI-VTDGYVTSNlaEGGMIAEMIAHSAIPIIV-ADDTKFNRSLFANIGPLSVAKYLVTN 242
Cdd:PRK10434 154 GQLAENAfeHFTFDKLFIGTDGIdLNAGVTTFN--EVYTVSKAMCNAAREIILmADSSKFGRKSPNVVCSLEKVDKLITD 231
|
250 260
....*....|....*....|.
gi 746639152 243 AEPPEDLNTALISNGVKVVIA 263
Cdd:PRK10434 232 AGIDPAFRQALEEKGIEVIIT 252
|
|
| PRK09802 |
PRK09802 |
DeoR family transcriptional regulator; |
9-263 |
4.20e-24 |
|
DeoR family transcriptional regulator;
Pssm-ID: 182086 [Multi-domain] Cd Length: 269 Bit Score: 97.62 E-value: 4.20e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 9 RTRQAELAKRILSEGHMTVADLAAEFDVSADTIRRDLYVLDKAGTIVRAHGGAMNPLSIAKP-DTRVDVRLKFKNDEKIA 87
Cdd:PRK09802 16 SERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSvEPSVEDKSALNTAMKRS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 88 IAKTVADLIPDQSTLIVNGGTTTLQLAHALRDHRDLTIATNNLRFPQIIPANCFQDLYVFGGRVRSQMETTVGKlelpHG 167
Cdd:PRK09802 96 VAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGD----QA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 168 DLT-QPVDFkaDYAVIGVGGIVTD-GYVTSNLAEGGMIAEMIAHSAIPIIVADDTKFNRSLFANIGPLSVAKYLVTNAEP 245
Cdd:PRK09802 172 EQSlQNYHF--DMLFLGVDAIDLErGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGI 249
|
250
....*....|....*...
gi 746639152 246 PEDLNTALISNGVKVVIA 263
Cdd:PRK09802 250 PADSLEGLRKAGVEVILV 267
|
|
| PRK10411 |
PRK10411 |
L-fucose operon activator; |
10-246 |
4.73e-14 |
|
L-fucose operon activator;
Pssm-ID: 236684 [Multi-domain] Cd Length: 240 Bit Score: 69.45 E-value: 4.73e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 10 TRQAELAKRILSEGHMTVADLAAEFDVSADTIRRDLYVLDKAGTIVRAHGGAM----------NPLSIakpdtrvdvRLK 79
Cdd:PRK10411 4 ARQQAIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKILRNHGRAKyihrqnqdsgDPFHI---------RLK 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 80 FKNDEKIAIAKTVADLIPDQSTLIVNGGTTTLQLAHALRDhRDLTIATNNLRFPQIIpancfqdlyvfGGRVRSQMETTV 159
Cdd:PRK10411 75 SHYAHKADIAREALAWIEEGMVIALDASSTCWYLARQLPD-INIQVFTNSHPICQEL-----------GKRERIQLISSG 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 160 GKLELPHGD------LTQPVDFKADYAVIGVGGIVTDGYV-TSNLAEGGMIAEMIAHSAIPIIVADDTKFNRSLFANIGP 232
Cdd:PRK10411 143 GTLERKYGCyvnpslISQLKSLEIDLFIFSCEGIDSSGALwDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEARIGH 222
|
250
....*....|....
gi 746639152 233 LSVAKYLVTNAEPP 246
Cdd:PRK10411 223 LDEVTHIISDERQV 236
|
|
| HTH_DeoR |
pfam08220 |
DeoR-like helix-turn-helix domain; |
11-61 |
4.49e-13 |
|
DeoR-like helix-turn-helix domain;
Pssm-ID: 285436 [Multi-domain] Cd Length: 57 Bit Score: 62.28 E-value: 4.49e-13
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 746639152 11 RQAELAKRILSEGHMTVADLAAEFDVSADTIRRDLYVLDKAGTIVRAHGGA 61
Cdd:pfam08220 1 RIQQILELLKQQGTLSVEELAELLGVSEMTIRRDLNELEEQGLLTRTHGGA 51
|
|
| HTH_DEOR |
smart00420 |
helix_turn_helix, Deoxyribose operon repressor; |
11-61 |
1.49e-12 |
|
helix_turn_helix, Deoxyribose operon repressor;
Pssm-ID: 197714 [Multi-domain] Cd Length: 53 Bit Score: 60.70 E-value: 1.49e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 746639152 11 RQAELAKRILSEGHMTVADLAAEFDVSADTIRRDLYVLDKAGTIVRAHGGA 61
Cdd:smart00420 1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGA 51
|
|
| PRK13509 |
PRK13509 |
HTH-type transcriptional regulator UlaR; |
21-263 |
3.90e-09 |
|
HTH-type transcriptional regulator UlaR;
Pssm-ID: 184100 [Multi-domain] Cd Length: 251 Bit Score: 55.78 E-value: 3.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 21 SEGHMTVADLAAEFDVSADTIRRDLYVLDKAGTIVRAHGGAmNPLSIAKP-DTRVDVRLKFKNDEKIAIAKTVADLIPDQ 99
Cdd:PRK13509 16 QLGFVTVEKVIERLGISPATARRDINKLDESGKLKKVRNGA-EAITQQRPrWTPMNIHQAQNHDEKVRIAKAASQLCNPG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 100 STLIVNGGTTTLQLAHALRdHRDLTIATNNLRFPQIIPANCFQDLYVFGGRVRSQMETTVGklelPHGDLTQpvDFKADY 179
Cdd:PRK13509 95 ESVVINCGSTAFLLGRELC-GKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLS----PQGSENS--LYAGHW 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 180 AVIGVGGIVTDGYVTSNLAEGGMIAEMIAHSAIPIIVADDTKFNRS---LFANIGPLSVakyLVTNAEPPEDLNTALISN 256
Cdd:PRK13509 168 MFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERagmLFSRADQIDM---LITGKNADPEVLQQLEAQ 244
|
....*..
gi 746639152 257 GVKVVIA 263
Cdd:PRK13509 245 GVSILLV 251
|
|
| PRK10681 |
PRK10681 |
DNA-binding transcriptional repressor DeoR; Provisional |
10-260 |
9.09e-06 |
|
DNA-binding transcriptional repressor DeoR; Provisional
Pssm-ID: 182644 [Multi-domain] Cd Length: 252 Bit Score: 45.84 E-value: 9.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 10 TRQAE----LAKRILSEGHMTVADLAAEFDVSADTIRRDLY-----VLDKAGTIVRAHGGAMNPLsIAKPDTRVdvrlkf 80
Cdd:PRK10681 3 TRRDErigqLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNahsapVVLLGGYIVLEPRSASHYL-LSDQKSRL------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 81 kNDEKIAIAKTVADLIPDQSTLIVNGGTTTLQLAHALRDHRDLTIATNNLrfpqiipaNCF---QD-----LYVFGGRVR 152
Cdd:PRK10681 76 -VEEKRRAAQLAATLVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCYSL--------NTFlalQEkphcrAILCGGEFH 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746639152 153 sqmettvgklelPHGDLTQPVDFKA-------DYAVIGVGGI-VTDGYVTSNLAEGGMIAEMIAHSAIPIIVADDTKFNR 224
Cdd:PRK10681 147 ------------ASNAIFKPLDFQQtldnicpDIAFYSAAGVhVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGK 214
|
250 260 270
....*....|....*....|....*....|....*.
gi 746639152 225 SLFANIGPLSVAKYLVTNAEPPEDLNTALISNGVKV 260
Cdd:PRK10681 215 VRPARMGDLTRFDTVVSDRCPDDEFVKYAQAQRIKL 250
|
|
| YobV |
COG2378 |
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ... |
11-60 |
2.56e-05 |
|
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];
Pssm-ID: 441945 [Multi-domain] Cd Length: 314 Bit Score: 44.68 E-value: 2.56e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 746639152 11 RQAELAKRILSEGHMTVADLAAEFDVSADTIRRDLYVLDKAGTIVRAHGG 60
Cdd:COG2378 6 RLLALLQLLQSRRGVTAAELAERLEVSERTIYRDIDALRELGVPIEAERG 55
|
|
| COG2345 |
COG2345 |
Predicted transcriptional regulator, ArsR family [Transcription]; |
5-56 |
7.12e-04 |
|
Predicted transcriptional regulator, ArsR family [Transcription];
Pssm-ID: 441914 [Multi-domain] Cd Length: 217 Bit Score: 39.91 E-value: 7.12e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 746639152 5 RLLPRTRQAeLAKRILSEGHMTVADLAAEFDVSADTIRRDLYVLDKAGTIVR 56
Cdd:COG2345 9 ALADPTRRR-ILELLKRAGPVTAAELAEALGLTPNAVRRHLDALEEEGLVER 59
|
|
| HTH_5 |
pfam01022 |
Bacterial regulatory protein, arsR family; Members of this family contains a DNA binding ... |
18-52 |
5.95e-03 |
|
Bacterial regulatory protein, arsR family; Members of this family contains a DNA binding 'helix-turn-helix' motif. This family includes other proteins which are not included in the Prosite definition.
Pssm-ID: 425993 [Multi-domain] Cd Length: 45 Bit Score: 33.96 E-value: 5.95e-03
10 20 30
....*....|....*....|....*....|....*
gi 746639152 18 RILSEGHMTVADLAAEFDVSADTIRRDLYVLDKAG 52
Cdd:pfam01022 9 KLLAEGELCVCELAEELGLSQSTVSHHLKKLREAG 43
|
|
| |
