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Conserved domains on  [gi|749547629|ref|WP_040181209|]
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MULTISPECIES: hypothetical protein [Klebsiella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3375 super family cl26431
Protein of unknown function (DUF3375); This family of proteins are functionally ...
 53-76 9.39e-04

Protein of unknown function (DUF3375); This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.


The actual alignment was detected with superfamily member pfam11855:

Pssm-ID: 463373  Cd Length: 469  Bit Score: 36.47  E-value: 9.39e-04
                          10        20
                  ....*....|....*....|....*.
gi 749547629   53 EDP--RIAELEAKIAEKDARIAELEA 76
Cdd:pfam11855 134 PDPeeRLAELEAEIAEIDAEIDRLRA 159
 
Name Accession Description Interval E-value
DUF3375 pfam11855
Protein of unknown function (DUF3375); This family of proteins are functionally ...
 53-76 9.39e-04

Protein of unknown function (DUF3375); This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.


Pssm-ID: 463373  Cd Length: 469  Bit Score: 36.47  E-value: 9.39e-04
                          10        20
                  ....*....|....*....|....*.
gi 749547629   53 EDP--RIAELEAKIAEKDARIAELEA 76
Cdd:pfam11855 134 PDPeeRLAELEAEIAEIDAEIDRLRA 159
PRK14150 PRK14150
heat shock protein GrpE; Provisional
 47-81 1.22e-03

heat shock protein GrpE; Provisional


Pssm-ID: 184539 [Multi-domain]  Cd Length: 193  Bit Score: 35.67  E-value: 1.22e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 749547629  47 EAPAVAEDPRIAELEAKIAEKDARIAELEAQLPEA 81
Cdd:PRK14150  19 AEVEQQEEADEAELEDELDEADARIAELEAQLAEA 53
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
43-82 4.80e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 34.61  E-value: 4.80e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 749547629  43 SPDGEAPAVAEDPRIAELEAKIAEKDARIAELEAQLPEAN 82
Cdd:COG3206  251 SGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNH 290
 
Name Accession Description Interval E-value
DUF3375 pfam11855
Protein of unknown function (DUF3375); This family of proteins are functionally ...
 53-76 9.39e-04

Protein of unknown function (DUF3375); This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.


Pssm-ID: 463373  Cd Length: 469  Bit Score: 36.47  E-value: 9.39e-04
                          10        20
                  ....*....|....*....|....*.
gi 749547629   53 EDP--RIAELEAKIAEKDARIAELEA 76
Cdd:pfam11855 134 PDPeeRLAELEAEIAEIDAEIDRLRA 159
PRK14150 PRK14150
heat shock protein GrpE; Provisional
 47-81 1.22e-03

heat shock protein GrpE; Provisional


Pssm-ID: 184539 [Multi-domain]  Cd Length: 193  Bit Score: 35.67  E-value: 1.22e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 749547629  47 EAPAVAEDPRIAELEAKIAEKDARIAELEAQLPEA 81
Cdd:PRK14150  19 AEVEQQEEADEAELEDELDEADARIAELEAQLAEA 53
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
43-82 4.80e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 34.61  E-value: 4.80e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 749547629  43 SPDGEAPAVAEDPRIAELEAKIAEKDARIAELEAQLPEAN 82
Cdd:COG3206  251 SGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNH 290
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
57-81 5.20e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 34.06  E-value: 5.20e-03
                         10        20
                 ....*....|....*....|....*
gi 749547629  57 IAELEAKIAEKDARIAELEAQLPEA 81
Cdd:COG2433  429 VEELEAELEEKDERIERLERELSEA 453
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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