NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|750539339|ref|WP_040821208|]
View 

ABC transporter permease [Thalassobium sp. R2A62]

Protein Classification

ABC transporter permease( domain architecture ID 11467993)

ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter, which may be involved in the transport of one or more from a variety of substrates such as nopaline and octopine

Gene Ontology:  GO:0043190|GO:0140359|GO:0042626|GO:0016020
PubMed:  25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ArtQ COG4215
ABC-type arginine transport system, permease component [Amino acid transport and metabolism];
17-286 3.84e-89

ABC-type arginine transport system, permease component [Amino acid transport and metabolism];


:

Pssm-ID: 443361 [Multi-domain]  Cd Length: 238  Bit Score: 265.06  E-value: 3.84e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339  17 LSCYLTTGKHMAFYTSFTTVLLLLAITAPTALAFGFAGASAARSTIAPLRWFGKTYIAIVRGVPDIAFFLFFVIALDQGF 96
Cdd:COG4215    6 LLMFGLQGWGPALLAGALVTLELALLSLLLGLVLGLLGALAKLSGNRPLRWLATGYTTVVRGVPDLLLILLLYFGGQILL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339  97 EYVRHKIrcpdwsepirqGNDFivctaaklplgnapqwVHESYGFMLAVLTFAIVFGAFAANVLFGAMRAVPRPQLETAE 176
Cdd:COG4215   86 NALADLF-----------GYDG----------------FIEINPFVAGVLALGFVFGAYATEVFRGAFLAVPKGQIEAAR 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339 177 AYGMTRRQTFWRVLVPQMWIYALPGLSNLWMVLIKATPLLFLLGVEDIVYWARELGGAKTARFtdyphqnwlmWYFLALL 256
Cdd:COG4215  139 AYGMSRWQVFRRILLPQMWRYALPGLGNNWLVLLKDTALVSVIGLVDLVRQAQEAAGSTREPF----------TFYLAAA 208

                        250       260       270
                 ....*....|....*....|....*....|
gi 750539339 257 VFYLCFTRLSEIVMDRLTIRLSRGQATAAG 286
Cdd:COG4215  209 LIYLALTTVSELVLARLERRASRGVRRAAG 238
 
Name Accession Description Interval E-value
ArtQ COG4215
ABC-type arginine transport system, permease component [Amino acid transport and metabolism];
17-286 3.84e-89

ABC-type arginine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443361 [Multi-domain]  Cd Length: 238  Bit Score: 265.06  E-value: 3.84e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339  17 LSCYLTTGKHMAFYTSFTTVLLLLAITAPTALAFGFAGASAARSTIAPLRWFGKTYIAIVRGVPDIAFFLFFVIALDQGF 96
Cdd:COG4215    6 LLMFGLQGWGPALLAGALVTLELALLSLLLGLVLGLLGALAKLSGNRPLRWLATGYTTVVRGVPDLLLILLLYFGGQILL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339  97 EYVRHKIrcpdwsepirqGNDFivctaaklplgnapqwVHESYGFMLAVLTFAIVFGAFAANVLFGAMRAVPRPQLETAE 176
Cdd:COG4215   86 NALADLF-----------GYDG----------------FIEINPFVAGVLALGFVFGAYATEVFRGAFLAVPKGQIEAAR 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339 177 AYGMTRRQTFWRVLVPQMWIYALPGLSNLWMVLIKATPLLFLLGVEDIVYWARELGGAKTARFtdyphqnwlmWYFLALL 256
Cdd:COG4215  139 AYGMSRWQVFRRILLPQMWRYALPGLGNNWLVLLKDTALVSVIGLVDLVRQAQEAAGSTREPF----------TFYLAAA 208

                        250       260       270
                 ....*....|....*....|....*....|
gi 750539339 257 VFYLCFTRLSEIVMDRLTIRLSRGQATAAG 286
Cdd:COG4215  209 LIYLALTTVSELVLARLERRASRGVRRAAG 238
PRK11123 PRK11123
arginine ABC transporter permease ArtQ;
63-279 2.45e-30

arginine ABC transporter permease ArtQ;


Pssm-ID: 182979 [Multi-domain]  Cd Length: 238  Bit Score: 114.00  E-value: 2.45e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339  63 APLRWFGKTYIAIVRGVPDI--AFFLFF-----VIALDQGFEyvrhkIRCPDWSEPIRQGNDFIvctaaklplgnapqwv 135
Cdd:PRK11123  41 RPVAWPGTALVTLLRGLPEIlvVLFIYFgssqlLLTLSDGFT-----LNLGFVQIPVQMDIENF---------------- 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339 136 hESYGFMLAVLTFAIVFGAFAANVLFGAMRAVPRPQLETAEAYGMTRRQTFWRVLVPQMWIYALPGLSNLWMVLIKATPL 215
Cdd:PRK11123 100 -EVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLGNQWLVLLKDTAL 178

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 750539339 216 LFLLGVEDIVYWARELGGAKTARFTdyphqnwlmWYFLALLVfYLCFTRLSEIVMDRLTIRLSR 279
Cdd:PRK11123 179 VSLISVNDLMLQTKSIATRTQEPFT---------WYIIAAAI-YLVITLISQYILKRIELRATR 232
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 128-220 7.52e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 54.21  E-value: 7.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339 128 LGNAPQWVHESYGFMLAVLTFAIVFGAFAANVLFGAMRAVPRPQLETAEAYGMTRRQTFWRVLVPQMWIYALPGLSNLWM 207
Cdd:cd06261   60 FGVLLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFA 139

                         90
                 ....*....|...
gi 750539339 208 VLIKATPLLFLLG 220
Cdd:cd06261  140 RALGEFALVSFLG 152
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 139-279 4.13e-07

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 49.22  E-value: 4.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339  139 YGFMLAVLTFAIVFGAFAANVLFGAMRAVPRPQLETAEAYGMTRRQTFWRVLVPQMWIYALPGLSNLWMVLIKATPLL-F 217
Cdd:pfam00528  50 HGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLeF 129

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 750539339  218 LLGVEDIVYWARElggakTARFTDYPhqnWLMWYFLALLVFYLCFTRLSEIVMDRLTIRLSR 279
Cdd:pfam00528 130 LGSWPGLGLLLIE-----AILGYDYP---EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
 
Name Accession Description Interval E-value
ArtQ COG4215
ABC-type arginine transport system, permease component [Amino acid transport and metabolism];
17-286 3.84e-89

ABC-type arginine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443361 [Multi-domain]  Cd Length: 238  Bit Score: 265.06  E-value: 3.84e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339  17 LSCYLTTGKHMAFYTSFTTVLLLLAITAPTALAFGFAGASAARSTIAPLRWFGKTYIAIVRGVPDIAFFLFFVIALDQGF 96
Cdd:COG4215    6 LLMFGLQGWGPALLAGALVTLELALLSLLLGLVLGLLGALAKLSGNRPLRWLATGYTTVVRGVPDLLLILLLYFGGQILL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339  97 EYVRHKIrcpdwsepirqGNDFivctaaklplgnapqwVHESYGFMLAVLTFAIVFGAFAANVLFGAMRAVPRPQLETAE 176
Cdd:COG4215   86 NALADLF-----------GYDG----------------FIEINPFVAGVLALGFVFGAYATEVFRGAFLAVPKGQIEAAR 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339 177 AYGMTRRQTFWRVLVPQMWIYALPGLSNLWMVLIKATPLLFLLGVEDIVYWARELGGAKTARFtdyphqnwlmWYFLALL 256
Cdd:COG4215  139 AYGMSRWQVFRRILLPQMWRYALPGLGNNWLVLLKDTALVSVIGLVDLVRQAQEAAGSTREPF----------TFYLAAA 208

                        250       260       270
                 ....*....|....*....|....*....|
gi 750539339 257 VFYLCFTRLSEIVMDRLTIRLSRGQATAAG 286
Cdd:COG4215  209 LIYLALTTVSELVLARLERRASRGVRRAAG 238
PRK11123 PRK11123
arginine ABC transporter permease ArtQ;
63-279 2.45e-30

arginine ABC transporter permease ArtQ;


Pssm-ID: 182979 [Multi-domain]  Cd Length: 238  Bit Score: 114.00  E-value: 2.45e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339  63 APLRWFGKTYIAIVRGVPDI--AFFLFF-----VIALDQGFEyvrhkIRCPDWSEPIRQGNDFIvctaaklplgnapqwv 135
Cdd:PRK11123  41 RPVAWPGTALVTLLRGLPEIlvVLFIYFgssqlLLTLSDGFT-----LNLGFVQIPVQMDIENF---------------- 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339 136 hESYGFMLAVLTFAIVFGAFAANVLFGAMRAVPRPQLETAEAYGMTRRQTFWRVLVPQMWIYALPGLSNLWMVLIKATPL 215
Cdd:PRK11123 100 -EVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLGNQWLVLLKDTAL 178

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 750539339 216 LFLLGVEDIVYWARELGGAKTARFTdyphqnwlmWYFLALLVfYLCFTRLSEIVMDRLTIRLSR 279
Cdd:PRK11123 179 VSLISVNDLMLQTKSIATRTQEPFT---------WYIIAAAI-YLVITLISQYILKRIELRATR 232
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 59-281 2.33e-25

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 100.53  E-value: 2.33e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339  59 RSTIAPLRWFGKTYIAIVRGVPDI--AFFLFFVIALdqgfeyvrhkircpdwsepirqgndfivctaAKLPLGnapqwvh 136
Cdd:COG0765   45 LSPNPVLRWLATAYVEFFRGTPLLvqLFFIYFGLPL-------------------------------LGIDLS------- 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339 137 esyGFMLAVLTFAIVFGAFAANVLFGAMRAVPRPQLETAEAYGMTRRQTFWRVLVPQMWIYALPGLSNLWMVLIKATPLL 216
Cdd:COG0765   87 ---PFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDTSLV 163

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 750539339 217 FLLGVEDIVYWARELgGAKTARFtdyphqnwlMWYFLALLVFYLCFTRLSEIVMDRLTIRLSRGQ 281
Cdd:COG0765  164 SVIGVPELTRAAQQI-ASRTFRP---------FEVYLVAALIYLVLTLPLSLLARRLERRLARGR 218
PRK15135 PRK15135
histidine ABC transporter permease HisQ;
145-280 2.50e-19

histidine ABC transporter permease HisQ;


Pssm-ID: 185089 [Multi-domain]  Cd Length: 228  Bit Score: 84.46  E-value: 2.50e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339 145 VLTFAIVFGAFAANVLFGAMRAVPRPQLETAEAYGMTRRQTFWRVLVPQMWIYALPGLSNLWMVLIKATPLLFLLGVEDI 224
Cdd:PRK15135  97 IITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQVILKATALVSLLGLEDV 176

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 750539339 225 VYwARELGGAKTarftdyphqnWLMWYF-LALLVFYLCFTRLSEIVMDRLTIRLSRG 280
Cdd:PRK15135 177 VK-ATQLAGKST----------WEPFYFaIVCGVIYLVFTTVSNGVLLWLERRYSVG 222
ArtM COG4160
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ...
 140-279 1.83e-18

ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443325 [Multi-domain]  Cd Length: 229  Bit Score: 82.06  E-value: 1.83e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339 140 GFMLAVLTFAIVFGAFAANVLFGAMRAVPRPQLETAEAYGMTRRQTFWRVLVPQMWIYALPGLSNLWMVLIKATPLLFLL 219
Cdd:COG4160   94 PWFCALLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRRIILPSALRRALPAYSNEVILMLKATALASTI 173

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339 220 GVEDIVYWARELGGAKTARFTdyphqnwlmwYFLALLVFYLCFTRLSEIVMDRLTIRLSR 279
Cdd:COG4160  174 TVMDLTGVARRIYSRTYDPFE----------PFLIAALIYLVITFLLTRLFRLLERRLLR 223
PRK15069 PRK15069
histidine ABC transporter permease HisM;
140-242 2.96e-10

histidine ABC transporter permease HisM;


Pssm-ID: 185029 [Multi-domain]  Cd Length: 234  Bit Score: 59.29  E-value: 2.96e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339 140 GFMLAVLTFAIVFGAFAANVLFGAMRAVPRPQLETAEAYGMTRRQTFWRVLVPQMWIYALPGLSNLWMVLIKATPLLFLL 219
Cdd:PRK15069 101 GLNCTILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTFKLYRRIILPSALRRALPAYSNEVILMLHATTLAFTA 180

                         90       100
                 ....*....|....*....|...
gi 750539339 220 GVEDIVYWARELGGAKTARFTDY 242
Cdd:PRK15069 181 TVPDILKIARDINSATYQPFQAF 203
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 128-220 7.52e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 54.21  E-value: 7.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339 128 LGNAPQWVHESYGFMLAVLTFAIVFGAFAANVLFGAMRAVPRPQLETAEAYGMTRRQTFWRVLVPQMWIYALPGLSNLWM 207
Cdd:cd06261   60 FGVLLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFA 139

                         90
                 ....*....|...
gi 750539339 208 VLIKATPLLFLLG 220
Cdd:cd06261  140 RALGEFALVSFLG 152
PRK15100 PRK15100
cystine ABC transporter permease;
60-215 8.36e-09

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 54.76  E-value: 8.36e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339  60 STIAPLRWFGKTYIAIVRGVPDIAFFLFFVIALdqgfeyvrhkircpdwsepirqgndfivctaaklplgnaPQWVHESY 139
Cdd:PRK15100  46 SPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGL---------------------------------------PQFGIELD 86

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 750539339 140 GFMLAVLTFAIVFGAFAANVLFGAMRAVPRPQLETAEAYGMTRRQTFWRVLVPQMWIYALPGLSNLWMVLIKATPL 215
Cdd:PRK15100  87 PIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDTSL 162
artM PRK11122
arginine ABC transporter permease ArtM;
144-273 2.75e-07

arginine ABC transporter permease ArtM;


Pssm-ID: 182978 [Multi-domain]  Cd Length: 222  Bit Score: 50.34  E-value: 2.75e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339 144 AVLTFAIVFGAFAANVLFGAMRAVPRPQLETAEAYGMTRRQTFwRVLVPQMWIYALPGLSNLWMVLIKATPLLFLLGVED 223
Cdd:PRK11122  94 AMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTL-RILLPYAFKRALSSYSNEVVLVFKSTSLAYTITLMD 172

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 750539339 224 IVYWARELGGaktarftdyphQNWLMWYFLALLVFYLCFTRLSEIVMDRL 273
Cdd:PRK11122 173 VMGYSQLLYG-----------RTYDVMVFGAAGIIYLVVNGLLTLLMRLI 211
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 139-279 4.13e-07

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 49.22  E-value: 4.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339  139 YGFMLAVLTFAIVFGAFAANVLFGAMRAVPRPQLETAEAYGMTRRQTFWRVLVPQMWIYALPGLSNLWMVLIKATPLL-F 217
Cdd:pfam00528  50 HGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLeF 129

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 750539339  218 LLGVEDIVYWARElggakTARFTDYPhqnWLMWYFLALLVFYLCFTRLSEIVMDRLTIRLSR 279
Cdd:pfam00528 130 LGSWPGLGLLLIE-----AILGYDYP---EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
PRK15107 PRK15107
glutamate/aspartate ABC transporter permease GltK;
60-232 3.16e-04

glutamate/aspartate ABC transporter permease GltK;


Pssm-ID: 185062 [Multi-domain]  Cd Length: 224  Bit Score: 41.35  E-value: 3.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339  60 STIAPLRWFGKTYIAIVRGVPDIAFFLFFVIaldqgfeyvrhkircpdwsepirqgndfIVCTAAKLPLGNAPQwvhESY 139
Cdd:PRK15107  47 SSFKPVAWFAKAYVNVFRSIPLVMVLLWFYL----------------------------IVPGFLQNVLGLSPK---TDI 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750539339 140 GFMLAVLTFAIVFGAFAANVLFGAMRAVPRPQLETAEAYGMTRRQTFWRVLVPQMWIYALPGLSNLWMVLIKATPLLFLL 219
Cdd:PRK15107  96 RLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSLVYVL 175

                        170
                 ....*....|...
gi 750539339 220 GVEDIVYWARELG 232
Cdd:PRK15107 176 SLADFFRTASTIG 188
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 148-210 1.36e-03

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 39.36  E-value: 1.36e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 750539339 148 FAIVFGAFAANVL--FGAMRAVPRPQLETAEAYGMTRRQTFWRVLVPQMWIYALPGL----SNLWMVLI 210
Cdd:COG0600  130 FVIFLGAFFPILLntAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLrialGLAWIGLV 198
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH