|
Name |
Accession |
Description |
Interval |
E-value |
| rho |
PRK09376 |
transcription termination factor Rho; Provisional |
1-418 |
0e+00 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 236490 [Multi-domain] Cd Length: 416 Bit Score: 863.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 1 MNLTELKSRPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Cdd:PRK09376 1 MNLSELKNKSLSELLELAEELGIENASRLRKQELIFAILKAQAEKGGDIFGEGVLEILPDGFGFLRSPDANYLPGPDDIY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 81 VSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNHDKPDNARNKILFENLTPLHANERMVMERGNGstEDITAR 160
Cdd:PRK09376 81 VSPSQIRRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARNRPLFENLTPLYPNERLRLETGNP--EDLSTR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 161 VLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNHPECVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV 240
Cdd:PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHV 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 241 QVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320
Cdd:PRK09376 239 QVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATAL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 321 VDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLI 400
Cdd:PRK09376 319 IDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELLLSPEELQKVWILRKILSPMDEVEAMEFLL 398
|
410
....*....|....*...
gi 750623771 401 DKLAMTKTNDEFFDAMRR 418
Cdd:PRK09376 399 DKLKKTKTNEEFFDSMNR 416
|
|
| rho |
TIGR00767 |
transcription termination factor Rho; This RNA helicase, the transcription termination factor ... |
1-418 |
0e+00 |
|
transcription termination factor Rho; This RNA helicase, the transcription termination factor Rho, occurs in nearly all bacteria but is missing from the Cyanobacteria, the Mollicutes (Mycoplasmas), and various Lactobacillales including Streptococcus. It is also missing, of course, from the Archaea, which also lack Nus factors. Members of this family from Micrococcus luteus, Mycobacterium tuberculosis, and related species have a related but highly variable long, highly charged insert near the amino end. Members of this family differ in the specificity of RNA binding. [Transcription, Transcription factors]
Pssm-ID: 162030 [Multi-domain] Cd Length: 415 Bit Score: 794.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 1 MNLTELKSRPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Cdd:TIGR00767 1 YNIEELKNMPLEELRKLAEQLGVENTSSLKKQELIFAILKAHAEQGGLIFGEGVLEILPDGFGFLRSPDSSYLPGPDDIY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 81 VSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNHDKPDNARNKILFENLTPLHANERMVMErgnGSTEDITAR 160
Cdd:TIGR00767 81 VSPSQIRRFNLRTGDTIEGQIRSPKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNERLRLE---TSTEDLSTR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 161 VLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNHPECVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV 240
Cdd:TIGR00767 158 VLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHV 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 241 QVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320
Cdd:TIGR00767 238 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATAL 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 321 VDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLI 400
Cdd:TIGR00767 318 IDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRKEELLLTPEELQKIWVLRKIISPMDSIEAMEFLI 397
|
410
....*....|....*...
gi 750623771 401 DKLAMTKTNDEFFDAMRR 418
Cdd:TIGR00767 398 SKLKKTKTNEEFLESMKR 415
|
|
| Rho |
COG1158 |
Transcription termination factor Rho [Transcription]; |
43-419 |
0e+00 |
|
Transcription termination factor Rho [Transcription];
Pssm-ID: 440772 [Multi-domain] Cd Length: 373 Bit Score: 788.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 43 AKGGEDIFGDGVLEILQDGFGFLRSadSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNHD 122
Cdd:COG1158 1 AEDDGLIPVEGVLEILPDGYGFLRS--SNYLPGPDDIYVSPSQIRRFGLRTGDAVTGQVRPPKEGEKYFALLRVESVNGE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 123 KPDNARNKILFENLTPLHANERMVMERGngsTEDITARVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNHPEC 202
Cdd:COG1158 79 DPEEARKRPDFDNLTPLYPDERLRLETT---PDDLSTRVIDLVAPIGKGQRGLIVAPPKAGKTTLLQDIANAITANHPEV 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 203 VLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Cdd:COG1158 156 HLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPAERHVQVAELVIERAKRLVELGKDVVILLDSITRLARAYNLVVPASG 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNR 362
Cdd:COG1158 236 RTLSGGVDANALYKPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINK 315
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 750623771 363 SGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRRQ 419
Cdd:COG1158 316 SGTRREELLLSPEELEKVWILRRALSGMDPVEAMEFLLDRLKKTKSNAEFLESMNKT 372
|
|
| rho_factor_C |
cd01128 |
C-terminal ATP binding domain of transcription termination factor rho; Transcription ... |
156-404 |
0e+00 |
|
C-terminal ATP binding domain of transcription termination factor rho; Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal oligonucleotide/oligosaccharide binding fold (OB-fold) domain which binds cysteine-rich nucleotides, and a C-terminal ATP binding domain. This alignment is of the C-terminal ATP binding domain.
Pssm-ID: 410872 [Multi-domain] Cd Length: 249 Bit Score: 508.67 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 156 DITARVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNHPECVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEP 235
Cdd:cd01128 1 ELSTRVIDLIAPIGKGQRGLIVAPPKAGKTTLLQNIANAIAKNHPEVELIVLLIDERPEEVTDMRRSVKGEVVASTFDEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 236 ASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTI 315
Cdd:cd01128 81 PERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKTLSGGVDANALHKPKRFFGAARNIEEGGSLTI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 316 IATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGETDA 395
Cdd:cd01128 161 IATALVDTGSRMDEVIFEEFKGTGNMELVLDRKLAEKRIFPAIDILKSGTRKEELLLTPEELQKIWLLRRILSPMDPIEA 240
|
....*....
gi 750623771 396 MEFLIDKLA 404
Cdd:cd01128 241 MEFLLKKLK 249
|
|
| Rho_RNA_bind |
pfam07497 |
Rho termination factor, RNA-binding domain; The Rho termination factor disengages newly ... |
53-125 |
3.30e-43 |
|
Rho termination factor, RNA-binding domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers.
Pssm-ID: 462182 [Multi-domain] Cd Length: 72 Bit Score: 145.59 E-value: 3.30e-43
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 750623771 53 GVLEILQDGFGFLRSadSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNHDKPD 125
Cdd:pfam07497 2 GILEILPDGYGFLRS--SNYLPGPDDIYVSPSQIRRFGLRTGDIVEGQVRPPKEGEKYFALLRVESVNGEDPE 72
|
|
| Rho_N |
smart00959 |
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly ... |
5-47 |
4.25e-15 |
|
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain.
Pssm-ID: 198027 [Multi-domain] Cd Length: 43 Bit Score: 68.94 E-value: 4.25e-15
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 750623771 5 ELKSRPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKGGE 47
Cdd:smart00959 1 ELKKKTLSELLEIAKELGIENASRLRKQELIFAILKAQAKKGG 43
|
|
| BREX_3_BrxF |
NF033453 |
BREX-3 system P-loop-containing protein BrxF; This family of proteins that are about 150 amino ... |
175-267 |
5.20e-04 |
|
BREX-3 system P-loop-containing protein BrxF; This family of proteins that are about 150 amino acids in length includes BrxF from type 3 BREX (bacteriophage exclusion) systems. Most members have the P-loop motif GxxGxGKT, but the region is surprisingly poorly conserved in a sizable fraction of otherwise strongly similar proteins.
Pssm-ID: 468038 Cd Length: 149 Bit Score: 40.17 E-value: 5.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 175 LIVAPPKAGKTMLLQNIAQSIAnnhpECVLMV-LLIDERPEEVTEMQrlvkgeviastfdepasRHVQVADMViekaKRL 253
Cdd:NF033453 20 LLVGPPGSGKTALLRELAAKRG----APVINVnLELSRRLLELPEKQ-----------------RALRAPRLL----DEI 74
|
90
....*....|....
gi 750623771 254 VEHKKDVVILLDSI 267
Cdd:NF033453 75 AEKSSGDVVLLDNI 88
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| rho |
PRK09376 |
transcription termination factor Rho; Provisional |
1-418 |
0e+00 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 236490 [Multi-domain] Cd Length: 416 Bit Score: 863.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 1 MNLTELKSRPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Cdd:PRK09376 1 MNLSELKNKSLSELLELAEELGIENASRLRKQELIFAILKAQAEKGGDIFGEGVLEILPDGFGFLRSPDANYLPGPDDIY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 81 VSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNHDKPDNARNKILFENLTPLHANERMVMERGNGstEDITAR 160
Cdd:PRK09376 81 VSPSQIRRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARNRPLFENLTPLYPNERLRLETGNP--EDLSTR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 161 VLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNHPECVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV 240
Cdd:PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHV 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 241 QVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320
Cdd:PRK09376 239 QVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATAL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 321 VDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLI 400
Cdd:PRK09376 319 IDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELLLSPEELQKVWILRKILSPMDEVEAMEFLL 398
|
410
....*....|....*...
gi 750623771 401 DKLAMTKTNDEFFDAMRR 418
Cdd:PRK09376 399 DKLKKTKTNEEFFDSMNR 416
|
|
| rho |
TIGR00767 |
transcription termination factor Rho; This RNA helicase, the transcription termination factor ... |
1-418 |
0e+00 |
|
transcription termination factor Rho; This RNA helicase, the transcription termination factor Rho, occurs in nearly all bacteria but is missing from the Cyanobacteria, the Mollicutes (Mycoplasmas), and various Lactobacillales including Streptococcus. It is also missing, of course, from the Archaea, which also lack Nus factors. Members of this family from Micrococcus luteus, Mycobacterium tuberculosis, and related species have a related but highly variable long, highly charged insert near the amino end. Members of this family differ in the specificity of RNA binding. [Transcription, Transcription factors]
Pssm-ID: 162030 [Multi-domain] Cd Length: 415 Bit Score: 794.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 1 MNLTELKSRPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Cdd:TIGR00767 1 YNIEELKNMPLEELRKLAEQLGVENTSSLKKQELIFAILKAHAEQGGLIFGEGVLEILPDGFGFLRSPDSSYLPGPDDIY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 81 VSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNHDKPDNARNKILFENLTPLHANERMVMErgnGSTEDITAR 160
Cdd:TIGR00767 81 VSPSQIRRFNLRTGDTIEGQIRSPKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNERLRLE---TSTEDLSTR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 161 VLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNHPECVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV 240
Cdd:TIGR00767 158 VLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHV 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 241 QVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320
Cdd:TIGR00767 238 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATAL 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 321 VDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLI 400
Cdd:TIGR00767 318 IDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRKEELLLTPEELQKIWVLRKIISPMDSIEAMEFLI 397
|
410
....*....|....*...
gi 750623771 401 DKLAMTKTNDEFFDAMRR 418
Cdd:TIGR00767 398 SKLKKTKTNEEFLESMKR 415
|
|
| Rho |
COG1158 |
Transcription termination factor Rho [Transcription]; |
43-419 |
0e+00 |
|
Transcription termination factor Rho [Transcription];
Pssm-ID: 440772 [Multi-domain] Cd Length: 373 Bit Score: 788.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 43 AKGGEDIFGDGVLEILQDGFGFLRSadSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNHD 122
Cdd:COG1158 1 AEDDGLIPVEGVLEILPDGYGFLRS--SNYLPGPDDIYVSPSQIRRFGLRTGDAVTGQVRPPKEGEKYFALLRVESVNGE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 123 KPDNARNKILFENLTPLHANERMVMERGngsTEDITARVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNHPEC 202
Cdd:COG1158 79 DPEEARKRPDFDNLTPLYPDERLRLETT---PDDLSTRVIDLVAPIGKGQRGLIVAPPKAGKTTLLQDIANAITANHPEV 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 203 VLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Cdd:COG1158 156 HLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPAERHVQVAELVIERAKRLVELGKDVVILLDSITRLARAYNLVVPASG 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNR 362
Cdd:COG1158 236 RTLSGGVDANALYKPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINK 315
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 750623771 363 SGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRRQ 419
Cdd:COG1158 316 SGTRREELLLSPEELEKVWILRRALSGMDPVEAMEFLLDRLKKTKSNAEFLESMNKT 372
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
53-412 |
0e+00 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 604.59 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 53 GVLEILqDGFGFLRsaDSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGER------YFALLKVNTVNHDKPDN 126
Cdd:PRK12678 298 GILDVL-DNYAFVR--TSGYLPGPNDVYVSMNQVRKNGLRKGDAVTGAVRAPREGEQgnqrqkFNPLVRLDSVNGMSPEE 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 127 ARNKILFENLTPLHANERMVMErgngsTE--DITARVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNHPECVL 204
Cdd:PRK12678 375 AKKRPEFGKLTPLYPNERLRLE-----TEpkKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHL 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 205 MVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKV 284
Cdd:PRK12678 450 MVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSITRLGRAYNLAAPASGRI 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 285 LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSG 364
Cdd:PRK12678 530 LSGGVDSTALYPPKRFFGAARNIENGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVNASG 609
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 750623771 365 TRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEF 412
Cdd:PRK12678 610 TRKEELLLSPDELAIVHKLRRVLSGLDSQQAIDLLISRLKKTKSNYEF 657
|
|
| PRK12608 |
PRK12608 |
transcription termination factor Rho; Provisional |
52-416 |
0e+00 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237150 [Multi-domain] Cd Length: 380 Bit Score: 555.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 52 DGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPkegERYFALLKVNTVNHDKPDNARNKI 131
Cdd:PRK12608 20 LGVLEILGDGFGFLRSARRNYLPSPDDVFVPPALIRRFNLRTGDVVEGVARPR---ERYRVLVRVDSVNGTDPEKLARRP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 132 LFENLTPLHANERMVMERGngsTEDITARVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNHPECVLMVLLIDE 211
Cdd:PRK12608 97 HFDDLTPLHPRERLRLETG---SDDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 212 RPEEVTEMQRLVKGEVIASTFDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDA 291
Cdd:PRK12608 174 RPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLSGGVDA 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 292 NALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELL 371
Cdd:PRK12608 254 RALQRPKRLFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRREELL 333
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 750623771 372 TKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAM 416
Cdd:PRK12608 334 LDSKELEKVRRLRRALASRKPVEAMEALLEKLRETPDNAEFLNSV 378
|
|
| rho_factor_C |
cd01128 |
C-terminal ATP binding domain of transcription termination factor rho; Transcription ... |
156-404 |
0e+00 |
|
C-terminal ATP binding domain of transcription termination factor rho; Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal oligonucleotide/oligosaccharide binding fold (OB-fold) domain which binds cysteine-rich nucleotides, and a C-terminal ATP binding domain. This alignment is of the C-terminal ATP binding domain.
Pssm-ID: 410872 [Multi-domain] Cd Length: 249 Bit Score: 508.67 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 156 DITARVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNHPECVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEP 235
Cdd:cd01128 1 ELSTRVIDLIAPIGKGQRGLIVAPPKAGKTTLLQNIANAIAKNHPEVELIVLLIDERPEEVTDMRRSVKGEVVASTFDEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 236 ASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTI 315
Cdd:cd01128 81 PERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKTLSGGVDANALHKPKRFFGAARNIEEGGSLTI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 316 IATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGETDA 395
Cdd:cd01128 161 IATALVDTGSRMDEVIFEEFKGTGNMELVLDRKLAEKRIFPAIDILKSGTRKEELLLTPEELQKIWLLRRILSPMDPIEA 240
|
....*....
gi 750623771 396 MEFLIDKLA 404
Cdd:cd01128 241 MEFLLKKLK 249
|
|
| Rho_RNA_bind |
pfam07497 |
Rho termination factor, RNA-binding domain; The Rho termination factor disengages newly ... |
53-125 |
3.30e-43 |
|
Rho termination factor, RNA-binding domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers.
Pssm-ID: 462182 [Multi-domain] Cd Length: 72 Bit Score: 145.59 E-value: 3.30e-43
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 750623771 53 GVLEILQDGFGFLRSadSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNHDKPD 125
Cdd:pfam07497 2 GILEILPDGYGFLRS--SNYLPGPDDIYVSPSQIRRFGLRTGDIVEGQVRPPKEGEKYFALLRVESVNGEDPE 72
|
|
| Rho_CSD |
cd04459 |
Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination ... |
51-118 |
2.72e-41 |
|
Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA are released from DNA template by an mRNA stem loop structure, which resembles the transcription termination mechanism used by eukaryotic pol III. The second mechanism is mediated by Rho factor. Rho factor terminates transcription by using energy from ATP hydrolysis to forcibly dissociate the transcripts from RNA polymerase. Rho protein contains an N-terminal S1-like domain, which binds single-stranded RNA. Rho has a C-terminal ATPase domain which hydrolyzes ATP to provide energy to strip RNA polymerase and mRNA from the DNA template. Rho functions as a homohexamer.
Pssm-ID: 239906 [Multi-domain] Cd Length: 68 Bit Score: 140.45 E-value: 2.72e-41
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 750623771 51 GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNT 118
Cdd:cd04459 1 GSGVLEILPDGFGFLRSSGYNYLPGPDDIYVSPSQIRRFNLRTGDTVVGQIRPPKEGERYFALLKVEA 68
|
|
| ATP-synt_ab |
pfam00006 |
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP ... |
160-363 |
2.33e-24 |
|
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Pssm-ID: 425417 [Multi-domain] Cd Length: 212 Bit Score: 99.74 E-value: 2.33e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 160 RVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIA-QSIANNhpeCVlmVLLIDERPEEVTEMQRLVKGE-------VIAST 231
Cdd:pfam00006 3 RAIDGLLPIGRGQRIGIFGGSGVGKTVLAGMIArQASADV---VV--YALIGERGREVREFIEELLGSgalkrtvVVVAT 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 232 FDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVL-----TGGVD---ANALHRpkrffgA 303
Cdd:pfam00006 78 SDEPPLARYRAPYTALTIAEYFRDQGKDVLLIMDSLTRFAEALREISLALGEPPgregyPPSVFsllARLLER------A 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 304 ARNVEEGGSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRS 363
Cdd:pfam00006 152 GRVKGKGGSITALPTVLVP-GDDITDPIPDNTRSILDGQIVLSRDLAEKGHYPAIDVLAS 210
|
|
| ATPase_flagellum-secretory_path_III |
cd01136 |
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; ... |
160-366 |
4.17e-21 |
|
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton-driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 410880 [Multi-domain] Cd Length: 265 Bit Score: 92.24 E-value: 4.17e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 160 RVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNhpecVLMVLLIDERPEEVTEMQRLVKGE-------VIASTF 232
Cdd:cd01136 56 RAIDGLLTCGEGQRIGIFAGSGVGKSTLLGMIARNTDAD----VNVIALIGERGREVREFIEKDLGEeglkrsvLVVATS 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 233 DEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLT-GGVDANALHRPKRFFGAARNVEEgG 311
Cdd:cd01136 132 DESPLLRVRAAYTATAIAEYFRDQGKKVLLLMDSLTRFAMAQREVGLAAGEPPTrRGYPPSVFALLPRLLERAGNGEK-G 210
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 750623771 312 SLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTR 366
Cdd:cd01136 211 SITAFYTVLVE-GDDFNDPIADEVRSILDGHIVLSRRLAERGHYPAIDVLASISR 264
|
|
| PRK07594 |
PRK07594 |
EscN/YscN/HrcN family type III secretion system ATPase; |
160-385 |
1.47e-19 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 136438 [Multi-domain] Cd Length: 433 Bit Score: 90.01 E-value: 1.47e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 160 RVLDLAAPIGKGQRGLIVAPPKAGKTMLLqniaqSIANNHPECVLMVL-LIDERPEEVTEM----------QRLVkgeVI 228
Cdd:PRK07594 144 RAIDSVATCGEGQRVGIFSAPGVGKSTLL-----AMLCNAPDADSNVLvLIGERGREVREFidftlseetrKRCV---IV 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 229 ASTFDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVdanalHRPKRFFGAARNVE 308
Cdd:PRK07594 216 VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE-----YPPGVFSALPRLLE 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 309 -----EGGSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWIL 383
Cdd:PRK07594 291 rtgmgEKGSITAFYTVLVE-GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL 369
|
..
gi 750623771 384 RK 385
Cdd:PRK07594 370 RR 371
|
|
| PRK06820 |
PRK06820 |
EscN/YscN/HrcN family type III secretion system ATPase; |
160-400 |
2.62e-16 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180712 [Multi-domain] Cd Length: 440 Bit Score: 80.24 E-value: 2.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 160 RVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAqsianNHPECVLMVL-LIDERPEEVTEM----------QRLVkgeVI 228
Cdd:PRK06820 152 RAIDGILSCGEGQRIGIFAAAGVGKSTLLGMLC-----ADSAADVMVLaLIGERGREVREFleqvltpearARTV---VV 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 229 ASTFDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKV-LTGGVDANALHRPKRFFGAARNV 307
Cdd:PRK06820 224 VATSDRPALERLKGLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREIGLAAGEPpAAGSFPPSVFANLPRLLERTGNS 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 308 EEgGSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIv 387
Cdd:PRK06820 304 DR-GSITAFYTVLVE-GDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQKLRRM- 380
|
250
....*....|...
gi 750623771 388 hpMGETDAMEFLI 400
Cdd:PRK06820 381 --LACYQEIELLV 391
|
|
| RecA-like_ion-translocating_ATPases |
cd19476 |
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the ... |
160-366 |
8.33e-16 |
|
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the NTP-binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410884 [Multi-domain] Cd Length: 270 Bit Score: 77.11 E-value: 8.33e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 160 RVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNHPEcVLMVLLIDERPEEVTE-MQRLVKGE------VIASTF 232
Cdd:cd19476 56 KVIDLLAPYGRGQKIGIFGGSGVGKTVLAMQLARNQAKAHAG-VVVFAGIGERGREVNDlYEEFTKSGamertvVVANTA 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 233 DEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKV-LTGGVDANALHRPKRFFG-AARNVEEG 310
Cdd:cd19476 135 NDPPGARMRVPYTGLTIAEYFRDNGQHVLLIIDDISRYAEALREMSALLGEPpGREGYPPYLFTKLATLYErAGKVKDGG 214
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 750623771 311 GSLTIIATALVDTGSKMDEVIYEEFKGTgNMELHLNRKIAEKRVFPAIDFNRSGTR 366
Cdd:cd19476 215 GSITAIPAVSTPGDDLTDPIPDNTFAIL-DGQIVLSRELARKGIYPAINVLDSTSR 269
|
|
| Rho_N |
smart00959 |
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly ... |
5-47 |
4.25e-15 |
|
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain.
Pssm-ID: 198027 [Multi-domain] Cd Length: 43 Bit Score: 68.94 E-value: 4.25e-15
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 750623771 5 ELKSRPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKGGE 47
Cdd:smart00959 1 ELKKKTLSELLEIAKELGIENASRLRKQELIFAILKAQAKKGG 43
|
|
| CSP |
smart00357 |
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
53-116 |
1.33e-14 |
|
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor.
Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 68.01 E-value: 1.33e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 750623771 53 GVLEILQDGFGFLRSADssylaGPDDIYVSPSQI--RRFNLRTGDSIAGKIRPPKEGERYFALLKV 116
Cdd:smart00357 2 GVVKWFNKGFGFIRPDD-----GGKDVFVHPSQIqgGLKSLREGDEVEFKVVSPEGGEKPEAENVV 62
|
|
| Rho_N |
pfam07498 |
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly ... |
5-47 |
1.38e-14 |
|
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497).
Pssm-ID: 429493 [Multi-domain] Cd Length: 43 Bit Score: 67.40 E-value: 1.38e-14
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 750623771 5 ELKSRPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKGGE 47
Cdd:pfam07498 1 ELKEKTLSELREIAKELGIENYSRLRKQELIFAILKAQAEKGG 43
|
|
| fliI |
PRK07196 |
flagellar protein export ATPase FliI; |
156-366 |
1.05e-13 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180875 [Multi-domain] Cd Length: 434 Bit Score: 72.23 E-value: 1.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 156 DITARVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNhpecVLMVLLIDERPEEVTEM-------QRLVKGEVI 228
Cdd:PRK07196 140 DVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQAD----VVVVGLIGERGREVKEFiehslqaAGMAKSVVV 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 229 ASTFDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGK-VLTGGVDANALHRPKRFFGAARNV 307
Cdd:PRK07196 216 AAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEpPATKGYPPSAFSIIPRLAESAGNS 295
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 750623771 308 EEGGSLTIIATALVDTGSKMDEVIyEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTR 366
Cdd:PRK07196 296 SGNGTMTAIYTVLAEGDDQQDPIV-DCARAVLDGHIVLSRKLAEAGHYPAIDISQSISR 353
|
|
| fliI |
PRK08927 |
flagellar protein export ATPase FliI; |
138-366 |
1.34e-13 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 236351 [Multi-domain] Cd Length: 442 Bit Score: 71.93 E-value: 1.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 138 PLHANERMvmergnGSTEDITARVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNhpecVLMVLLIDERPEEVT 217
Cdd:PRK08927 131 PAHSRARV------GEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADAD----VSVIGLIGERGREVQ 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 218 EM-------QRLVKGEVIASTFDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG-----KVL 285
Cdd:PRK08927 201 EFlqddlgpEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGeppttKGY 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 286 TGGVDANAlhrPKRFFGAARNVEEGGSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGT 365
Cdd:PRK08927 281 TPTVFAEL---PRLLERAGPGPIGEGTITGLFTVLVD-GDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVS 356
|
.
gi 750623771 366 R 366
Cdd:PRK08927 357 R 357
|
|
| PRK06936 |
PRK06936 |
EscN/YscN/HrcN family type III secretion system ATPase; |
160-387 |
2.32e-13 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180762 [Multi-domain] Cd Length: 439 Bit Score: 71.32 E-value: 2.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 160 RVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNhpecVLMVLLIDERPEEVTEM-------QRLVKGEVIASTF 232
Cdd:PRK06936 151 RVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVD----VTVLALIGERGREVREFiesdlgeEGLRKAVLVVATS 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 233 DEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTggvdaNALHRPKRFFGAARNVE---- 308
Cdd:PRK06936 227 DRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPT-----RRGYPPSVFAALPRLMEragq 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 309 -EGGSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIV 387
Cdd:PRK06936 302 sDKGSITALYTVLVE-GDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGRLRELL 380
|
|
| fliI |
PRK07721 |
flagellar protein export ATPase FliI; |
160-366 |
7.19e-13 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181092 [Multi-domain] Cd Length: 438 Bit Score: 69.75 E-value: 7.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 160 RVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIA-QSIANnhpecVLMVLLIDERPEEVTE-MQR------LVKGEVIAST 231
Cdd:PRK07721 147 RAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIArNTSAD-----LNVIALIGERGREVREfIERdlgpegLKRSIVVVAT 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 232 FDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTV-----VPSSGKVLTGGVDANAlhrPKRFFGAARN 306
Cdd:PRK07721 222 SDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIglavgEPPTTKGYTPSVFAIL---PKLLERTGTN 298
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 307 veEGGSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTR 366
Cdd:PRK07721 299 --ASGSITAFYTVLVD-GDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSR 355
|
|
| PRK08149 |
PRK08149 |
FliI/YscN family ATPase; |
160-401 |
1.41e-12 |
|
FliI/YscN family ATPase;
Pssm-ID: 236166 [Multi-domain] Cd Length: 428 Bit Score: 68.87 E-value: 1.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 160 RVLDLAAPIGKGQRGLIVAPPKAGKTMLL-QNIAQSIANnhpecVLMVLLIDERPEEVTE----MQRLVKGE---VIAST 231
Cdd:PRK08149 140 RAIDGLLTCGVGQRMGIFASAGCGKTSLMnMLIEHSEAD-----VFVIGLIGERGREVTEfvesLRASSRREkcvLVYAT 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 232 FDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKV-LTGGVDANA-------LHRPKRFfga 303
Cdd:PRK08149 215 SDFSSVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELpARRGYPASVfdslprlLERPGAT--- 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 304 arnveEGGSLTIIATALVDTGSKMDeVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWIL 383
Cdd:PRK08149 292 -----LAGSITAFYTVLLESEEEPD-PIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQVTDPKHRQLAAAF 365
|
250
....*....|....*...
gi 750623771 384 RKIvhpMGETDAMEFLID 401
Cdd:PRK08149 366 RKL---LTRLEELQLFID 380
|
|
| fliI |
PRK06793 |
flagellar protein export ATPase FliI; |
138-411 |
2.94e-12 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180696 [Multi-domain] Cd Length: 432 Bit Score: 68.08 E-value: 2.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 138 PLHANERM----VMERGngsteditARVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQsianNHPECVLMVLLIDERP 213
Cdd:PRK06793 127 PIHAFEREeitdVFETG--------IKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAK----NAKADINVISLVGERG 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 214 EEVTEMQRLVKGE-------VIASTFDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTV------VPS 280
Cdd:PRK06793 195 REVKDFIRKELGEegmrksvVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVdiavkeLPI 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 281 SGK-VLTGGVDANALHRPKRffgaarnvEEGGSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAID 359
Cdd:PRK06793 275 GGKtLLMESYMKKLLERSGK--------TQKGSITGIYTVLVD-GDDLNGPVPDLARGILDGHIVLKRELATLSHYPAIS 345
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 750623771 360 FNRSGTRREELLTKTDELQKMWILRKIVHPMGETDamefLIDKLAMTKTNDE 411
Cdd:PRK06793 346 VLDSVSRIMEEIVSPNHWQLANEMRKILSIYKENE----LYFKLGTIQENAE 393
|
|
| fliI |
PRK06002 |
flagellar protein export ATPase FliI; |
160-366 |
6.52e-12 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 235666 [Multi-domain] Cd Length: 450 Bit Score: 66.94 E-value: 6.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 160 RVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNhpecVLMVLLIDERPEEVTEM------QRLVKGEVIASTFD 233
Cdd:PRK06002 154 RVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLARADAFD----TVVIALVGERGREVREFledtlaDNLKKAVAVVATSD 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 234 EPASRHVQVADMviekAKRLVEHKKD----VVILLDSITRLARAYNTVVPSSGKvltggvDANALHRPKRFFG------- 302
Cdd:PRK06002 230 ESPMMRRLAPLT----ATAIAEYFRDrgenVLLIVDSVTRFAHAAREVALAAGE------PPVARGYPPSVFSelprlle 299
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 750623771 303 -AARNVEEGGSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTR 366
Cdd:PRK06002 300 rAGPGAEGGGSITGIFSVLVD-GDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISR 363
|
|
| FliI |
COG1157 |
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular ... |
160-363 |
2.43e-11 |
|
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440771 [Multi-domain] Cd Length: 433 Bit Score: 65.05 E-value: 2.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 160 RVLDLAAPIGKGQR-GlIVAPPKAGKTMLLQNIAQsiannHPECVLMVL-LIDERPEEVTE----------MQRLVkgeV 227
Cdd:COG1157 146 RAIDGLLTVGRGQRiG-IFAGSGVGKSTLLGMIAR-----NTEADVNVIaLIGERGREVREfieddlgeegLARSV---V 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 228 IASTFDEPASRHVQVADMviekAKRLVEH----KKDVVILLDSITRLARA----------------YntvvPSSgkvltg 287
Cdd:COG1157 217 VVATSDEPPLMRLRAAYT----ATAIAEYfrdqGKNVLLLMDSLTRFAMAqreiglaageppatrgY----PPS------ 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 288 gvdanalhrpkrFFGA-ARNVE-----EGGSLTIIATALVDtGSKMDEVIYEEFKGT--GnmelH--LNRKIAEKRVFPA 357
Cdd:COG1157 283 ------------VFALlPRLLEragngGKGSITAFYTVLVE-GDDMNDPIADAVRGIldG----HivLSRKLAERGHYPA 345
|
....*.
gi 750623771 358 IDFNRS 363
Cdd:COG1157 346 IDVLAS 351
|
|
| fliI |
PRK05688 |
flagellar protein export ATPase FliI; |
156-380 |
9.61e-09 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 168181 [Multi-domain] Cd Length: 451 Bit Score: 57.05 E-value: 9.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 156 DITARVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNhpecVLMVLLIDERPEEVTEMQRLVKGE-------VI 228
Cdd:PRK05688 153 DVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD----IIVVGLIGERGREVKEFIEHILGEeglkrsvVV 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 229 ASTFDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKV-LTGGVDANALHRPKRFFGAARNV 307
Cdd:PRK05688 229 ASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPpATKGYPPSVFAKLPKLVERAGNA 308
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 750623771 308 EEG-GSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKM 380
Cdd:PRK05688 309 EPGgGSITAFYTVLSE-GDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVDPEHLRRA 381
|
|
| PRK05922 |
PRK05922 |
type III secretion system ATPase; Validated |
160-314 |
5.33e-08 |
|
type III secretion system ATPase; Validated
Pssm-ID: 102061 [Multi-domain] Cd Length: 434 Bit Score: 54.52 E-value: 5.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 160 RVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIA---QSIANnhpecvlMVLLIDERPEEVTE----------MQRLVkge 226
Cdd:PRK05922 146 KAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAkgsKSTIN-------VIALIGERGREVREyieqhkeglaAQRTI--- 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 227 VIASTFDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVL-TGGVDANALHRPKRFFGAAR 305
Cdd:PRK05922 216 IIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVALARGETLsAHHYAASVFHHVSEFTERAG 295
|
....*....
gi 750623771 306 NvEEGGSLT 314
Cdd:PRK05922 296 N-NDKGSIT 303
|
|
| RecA-like_superfamily |
cd01120 |
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 ... |
174-336 |
1.85e-07 |
|
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410865 [Multi-domain] Cd Length: 119 Bit Score: 49.42 E-value: 1.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 174 GLIVAPPKAGKTMLLQNIAQSIAnnHPECVLMVLLIderpeevtemqrlvkgeviastfdepasrhvqvADMVIEKAKRL 253
Cdd:cd01120 1 ILITGPPGSGKTTLLLQFAEQAL--LSDEPVIFISF---------------------------------LDTILEAIEDL 45
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 254 VEHKKDVVILLDSITRLARAYntvvpssgkvlTGGVDANALHRPKRFFGAARNveegGSLTIIATALVDT------GSKM 327
Cdd:cd01120 46 IEEKKLDIIIIDSLSSLARAS-----------QGDRSSELLEDLAKLLRAARN----TGITVIATIHSDKfdidrgGSSN 110
|
....*....
gi 750623771 328 DEVIYEEFK 336
Cdd:cd01120 111 DERLLKSLR 119
|
|
| fliI |
PRK07960 |
flagellum-specific ATP synthase FliI; |
156-366 |
1.05e-06 |
|
flagellum-specific ATP synthase FliI;
Pssm-ID: 181182 [Multi-domain] Cd Length: 455 Bit Score: 50.55 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 156 DITARVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNhpecVLMVLLIDERPEEVTEMQRLVKGE-------VI 228
Cdd:PRK07960 160 DTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQAD----VIVVGLIGERGREVKDFIENILGAegrarsvVI 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 229 ASTFDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGK-VLTGGVDANALHR-PKRFFGAARN 306
Cdd:PRK07960 236 AAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEpPATKGYPPSVFAKlPALVERAGNG 315
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 307 VEEGGSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTR 366
Cdd:PRK07960 316 ISGGGSITAFYTVLTE-GDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISR 374
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
170-319 |
5.93e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 43.13 E-value: 5.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 170 KGQRGLIVAPPKAGKTMLLQNIAQSIANNHPECvlmVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRhvqvadmvIEK 249
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV---IYIDGEDILEEVLDQLLLIIVGGKKASGSGELR--------LRL 69
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 250 AKRLVEHKKDVVILLDSITRLARAyNTVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATA 319
Cdd:smart00382 70 ALALARKLKPDVLILDEITSLLDA-EQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRF 138
|
|
| fliI |
PRK08472 |
flagellar protein export ATPase FliI; |
169-419 |
4.28e-04 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181439 [Multi-domain] Cd Length: 434 Bit Score: 42.37 E-value: 4.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 169 GKGQRGLIVAPPKAGKTMLLQNIAQSiaNNHPecVLMVLLIDERPEEVTE-MQRLVKGE-----VIASTFDEPASRHVQV 242
Cdd:PRK08472 155 GKGQKLGIFAGSGVGKSTLMGMIVKG--CLAP--IKVVALIGERGREIPEfIEKNLGGDlentvIVVATSDDSPLMRKYG 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 243 ADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALV 321
Cdd:PRK08472 231 AFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSkGYPPSVLSLLPQLMERAGKEEGKGSITAFFTVLV 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 322 DtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGETdamEFLID 401
Cdd:PRK08472 311 E-GDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMNDIISPEHKLAARKFKRLYSLLKEN---EVLIR 386
|
250
....*....|....*....
gi 750623771 402 KLAMTKTND-EFFDAMRRQ 419
Cdd:PRK08472 387 IGAYQKGNDkELDEAISKK 405
|
|
| BREX_3_BrxF |
NF033453 |
BREX-3 system P-loop-containing protein BrxF; This family of proteins that are about 150 amino ... |
175-267 |
5.20e-04 |
|
BREX-3 system P-loop-containing protein BrxF; This family of proteins that are about 150 amino acids in length includes BrxF from type 3 BREX (bacteriophage exclusion) systems. Most members have the P-loop motif GxxGxGKT, but the region is surprisingly poorly conserved in a sizable fraction of otherwise strongly similar proteins.
Pssm-ID: 468038 Cd Length: 149 Bit Score: 40.17 E-value: 5.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 175 LIVAPPKAGKTMLLQNIAQSIAnnhpECVLMV-LLIDERPEEVTEMQrlvkgeviastfdepasRHVQVADMViekaKRL 253
Cdd:NF033453 20 LLVGPPGSGKTALLRELAAKRG----APVINVnLELSRRLLELPEKQ-----------------RALRAPRLL----DEI 74
|
90
....*....|....
gi 750623771 254 VEHKKDVVILLDSI 267
Cdd:NF033453 75 AEKSSGDVVLLDNI 88
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
174-265 |
6.92e-04 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 39.63 E-value: 6.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 174 GLIVAPPKAGKTMLLQNIAQSIANNHPECVLMVLliderPEEVTEMQRLvkgEVIASTFDEPASRHVQVADMVIEKAKRL 253
Cdd:pfam13401 8 LVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDL-----PSGTSPKDLL---RALLRALGLPLSGRLSKEELLAALQQLL 79
|
90
....*....|..
gi 750623771 254 VEHKKDVVILLD 265
Cdd:pfam13401 80 LALAVAVVLIID 91
|
|
| VacB |
COG0557 |
Exoribonuclease R [Transcription]; |
53-110 |
9.45e-04 |
|
Exoribonuclease R [Transcription];
Pssm-ID: 440323 [Multi-domain] Cd Length: 711 Bit Score: 41.63 E-value: 9.45e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 750623771 53 GVLEILQDGFGFLRSADssylaGPDDIYVSPSQIRrfNLRTGDSIAGKIRPPKEGERY 110
Cdd:COG0557 72 GRVRGHRDGFGFVIPDD-----GEEDIFIPPRELN--GALHGDRVLVRVTKEDRRGRP 122
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
168-270 |
1.68e-03 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 40.27 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 168 IGKGQRGLIVAPPKAGKTMLLQNIAQSIANNHP----EC----VLMVLLIDERPEEVTEMQRLVKG-----EVIASTFDE 234
Cdd:COG3598 10 LPEGGVTLLAGPPGTGKSFLALQLAAAVAAGGPwlgrRVppgkVLYLAAEDDRGELRRRLKALGADlglpfADLDGRLRL 89
|
90 100 110
....*....|....*....|....*....|....*.
gi 750623771 235 PASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRL 270
Cdd:COG3598 90 LSLAGDLDDTDDLEALERAIEEEGPDLVVIDPLARV 125
|
|
| atpA |
TIGR00962 |
proton translocating ATP synthase, F1 alpha subunit; The sequences of ATP synthase F1 alpha ... |
124-277 |
3.81e-03 |
|
proton translocating ATP synthase, F1 alpha subunit; The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 273365 [Multi-domain] Cd Length: 501 Bit Score: 39.29 E-value: 3.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 124 PDNARNKILFENLTPLHANERMVMERGNGSTEDITA-RVLDLAAPIGKGQRGLIVAPPKAGKTMLLQN--IAQSiaNNHP 200
Cdd:TIGR00962 113 PIDGKGPIDSDEFSPVEKIAPGVIERKSVHEPLQTGiKAIDAMIPIGRGQRELIIGDRQTGKTAVAIDtiINQK--DSDV 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750623771 201 ECVLM--------VLLIDERPEEVTEMQRLVkgeVIASTFDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLAR 272
Cdd:TIGR00962 191 YCIYVaigqkastVAQVVRKLEEHGAMAYTI---VVAATASDSASLQYLAPYTGCTMGEYFRDNGKHALIIYDDLSKQAV 267
|
....*
gi 750623771 273 AYNTV 277
Cdd:TIGR00962 268 AYRQI 272
|
|
| |
