NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|752488744|ref|WP_041174764|]
View 

MULTISPECIES: hypothetical protein [Haemophilus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PBECR3 pfam18812
phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3; A predicted endoRNase of the ...
 125-229 9.43e-11

phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3; A predicted endoRNase of the Barnase-EndoU-ColicinE5/D-RelE like nuclease fold found in polyvalent proteins of phages and conjugative elements. The predicted active site contains a conserved histidine and threonine residues.


:

Pssm-ID: 465876  Cd Length: 116  Bit Score: 57.35  E-value: 9.43e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752488744  125 KFAAGVLSAESKDLLKSK-TGTVWLSDDTLIKQFNSRDG-----QDFGLESYALFPDLFNQPDIVLQDNDR-----FYFI 193
Cdd:pfam18812   1 KKVGGILAPEIAELLGLDySGTVIYIDPGLIRHILKRHGnqlseKDRGQIDIARIPDIINNPDKIGYIGKNpkgksIEYV 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 752488744  194 KNFEKQRILGVIKHLSKFNEIFVLSAREINIKEVEK 229
Cdd:pfam18812  81 KKINNGYLVVVEVVDSKKNELYVKTMYKISGKKIEN 116
 
Name Accession Description Interval E-value
PBECR3 pfam18812
phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3; A predicted endoRNase of the ...
 125-229 9.43e-11

phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3; A predicted endoRNase of the Barnase-EndoU-ColicinE5/D-RelE like nuclease fold found in polyvalent proteins of phages and conjugative elements. The predicted active site contains a conserved histidine and threonine residues.


Pssm-ID: 465876  Cd Length: 116  Bit Score: 57.35  E-value: 9.43e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752488744  125 KFAAGVLSAESKDLLKSK-TGTVWLSDDTLIKQFNSRDG-----QDFGLESYALFPDLFNQPDIVLQDNDR-----FYFI 193
Cdd:pfam18812   1 KKVGGILAPEIAELLGLDySGTVIYIDPGLIRHILKRHGnqlseKDRGQIDIARIPDIINNPDKIGYIGKNpkgksIEYV 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 752488744  194 KNFEKQRILGVIKHLSKFNEIFVLSAREINIKEVEK 229
Cdd:pfam18812  81 KKINNGYLVVVEVVDSKKNELYVKTMYKISGKKIEN 116
 
Name Accession Description Interval E-value
PBECR3 pfam18812
phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3; A predicted endoRNase of the ...
 125-229 9.43e-11

phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3; A predicted endoRNase of the Barnase-EndoU-ColicinE5/D-RelE like nuclease fold found in polyvalent proteins of phages and conjugative elements. The predicted active site contains a conserved histidine and threonine residues.


Pssm-ID: 465876  Cd Length: 116  Bit Score: 57.35  E-value: 9.43e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752488744  125 KFAAGVLSAESKDLLKSK-TGTVWLSDDTLIKQFNSRDG-----QDFGLESYALFPDLFNQPDIVLQDNDR-----FYFI 193
Cdd:pfam18812   1 KKVGGILAPEIAELLGLDySGTVIYIDPGLIRHILKRHGnqlseKDRGQIDIARIPDIINNPDKIGYIGKNpkgksIEYV 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 752488744  194 KNFEKQRILGVIKHLSKFNEIFVLSAREINIKEVEK 229
Cdd:pfam18812  81 KKINNGYLVVVEVVDSKKNELYVKTMYKISGKKIEN 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH