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Conserved domains on  [gi|752540748|ref|WP_041212195|]
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16S rRNA (guanine(966)-N(2))-methyltransferase RsmD [Aeromonas caviae]

Protein Classification

class I SAM-dependent methyltransferase( domain architecture ID 106779)

class I SAM-dependent methyltransferase catalyzes the methylation of one or more specific substrates using S-adenosyl-L-methionine (SAM or AdoMet) as the methyl donor

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AdoMet_MTases super family cl17173
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
 13-203 1.21e-97

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


The actual alignment was detected with superfamily member PRK10909:

Pssm-ID: 473071  Cd Length: 199  Bit Score: 281.99  E-value: 1.21e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  13 KSPAPQGrAGVVRIISGQWKGRKLPVRDVEGLRPTTDRVKETIFNWLAPHVRGTRCLDLFAGSGGLGLEALSRYAQQVTL 92
Cdd:PRK10909   3 KKPNHSG-SGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  93 IEMDRGAADQLKKNLTTLGSSQGQVIQADAVSWLQGPATPFDLVFLDPPFRRELLPQVCELLEQRGWLASDALIYLEREK 172
Cdd:PRK10909  82 LEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEV 161

                        170       180       190
                 ....*....|....*....|....*....|.
gi 752540748 173 EMADLTLPASWKLLKDKQAGQVCYQLYLRDT 203
Cdd:PRK10909 162 ENGLPTVPANWQLHREKVAGQVAYRLYIREA 192
 
Name Accession Description Interval E-value
rsmD PRK10909
16S rRNA m(2)G966-methyltransferase; Provisional
 13-203 1.21e-97

16S rRNA m(2)G966-methyltransferase; Provisional


Pssm-ID: 236793  Cd Length: 199  Bit Score: 281.99  E-value: 1.21e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  13 KSPAPQGrAGVVRIISGQWKGRKLPVRDVEGLRPTTDRVKETIFNWLAPHVRGTRCLDLFAGSGGLGLEALSRYAQQVTL 92
Cdd:PRK10909   3 KKPNHSG-SGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  93 IEMDRGAADQLKKNLTTLGSSQGQVIQADAVSWLQGPATPFDLVFLDPPFRRELLPQVCELLEQRGWLASDALIYLEREK 172
Cdd:PRK10909  82 LEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEV 161

                        170       180       190
                 ....*....|....*....|....*....|.
gi 752540748 173 EMADLTLPASWKLLKDKQAGQVCYQLYLRDT 203
Cdd:PRK10909 162 ENGLPTVPANWQLHREKVAGQVAYRLYIREA 192
RsmD COG0742
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA ...
 24-204 9.86e-95

16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440505 [Multi-domain]  Cd Length: 183  Bit Score: 273.88  E-value: 9.86e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  24 VRIISGQWKGRKLPVRDVEGLRPTTDRVKETIFNWLAPHVRGTRCLDLFAGSGGLGLEALSRYAQQVTLIEMDRGAADQL 103
Cdd:COG0742    1 MRIIGGKARGRKLKVPKGPGTRPTTDRVREALFNILGPDIEGARVLDLFAGSGALGLEALSRGAASVVFVEKDRKAAAVI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748 104 KKNLTTLG-SSQGQVIQADAVSWL-QGPATPFDLVFLDPPFRRELLPQVCELLEQRGWLASDALIYLEREKEMADLTLPA 181
Cdd:COG0742   81 RKNLEKLGlEDRARVIRGDALRFLkRLAGEPFDLVFLDPPYAKGLLEKALELLAENGLLAPGGLIVVEHSKREELPELPA 160

                        170       180
                 ....*....|....*....|...
gi 752540748 182 SWKLLKDKQAGQVCYQLYLRDTK 204
Cdd:COG0742  161 GLELLKERKYGDTRLSFYRREEE 183
Cons_hypoth95 pfam03602
Conserved hypothetical protein 95;
24-199 7.50e-81

Conserved hypothetical protein 95;


Pssm-ID: 427391 [Multi-domain]  Cd Length: 179  Bit Score: 238.68  E-value: 7.50e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748   24 VRIISGQWKGRKLPVRDVEGLRPTTDRVKETIFNWLAPHVRGTRCLDLFAGSGGLGLEALSRYAQQVTLIEMDRGAADQL 103
Cdd:pfam03602   1 MRIIGGKARGRKLKVPPGPGTRPTTDRVREALFNWLAPYIEGARVLDLFAGSGALGLEALSRGAKRVTLVEKDKRAVQIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  104 KKNLTTLGSSQGQVIQADAVSWLQ--GPATPFDLVFLDPPFRRELLPQVCELLEQRGWLASDALIYLEREKEMADLTLPA 181
Cdd:pfam03602  81 KENLQLLGLPGAVLVMDALLALLRlaGKGPVFDIVFLDPPYAKGLIEEVLDLLAEKGWLKPNALIYVETEKRGELPEQPG 160

                         170
                  ....*....|....*...
gi 752540748  182 SWKLLKDKQAGQVCYQLY 199
Cdd:pfam03602 161 NLELVREKKYGQTTLAFY 178
TIGR00095 TIGR00095
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of ...
 22-199 1.07e-67

16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 188022 [Multi-domain]  Cd Length: 190  Bit Score: 205.72  E-value: 1.07e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748   22 GVVRIISGQWKGRKLPVRDVEGLRPTTDRVKETIFNWLAPHVRGTRCLDLFAGSGGLGLEALSRYAQQVTLIEMDRGAAD 101
Cdd:TIGR00095   8 GKIRIIGGQYRGRKLKVPPGPSTRPTTDRVRESLFNILRPDIVGAHFLDLFAGSGALGLEALSRGAASAVFVEQDRKVAQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  102 QLKKNLTTLG-SSQGQVIQADAVSWLQGPA---TPFDLVFLDPPFRRELLPQVCELLEQRGWLASDALIYLEREKEMADL 177
Cdd:TIGR00095  88 TLKENLSTLKkSGEQATVLNDAVRALLFLAkkqTPFDIIYLDPPFNRGLLEALLELLGENKWLNPKGLIVVEYDRENELP 167

                         170       180
                  ....*....|....*....|..
gi 752540748  178 TLPASWKLLKDKQAGQVCYQLY 199
Cdd:TIGR00095 168 TVPETWSLLRQKVYGQSALRLY 189
AdoMet_MTases cd02440
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
 67-172 5.39e-16

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


Pssm-ID: 100107 [Multi-domain]  Cd Length: 107  Bit Score: 70.54  E-value: 5.39e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  67 RCLDLFAGSGGLGLEALSRYAQQVTLIEMDRGAADQLKKNLTTLGSSQGQVIQADAVSWLQGPATPFDLVFLDPPFRREL 146
Cdd:cd02440    1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80

                         90       100
                 ....*....|....*....|....*.
gi 752540748 147 LPQVCELLEQRGWLASDALIYLEREK 172
Cdd:cd02440   81 EDLARFLEEARRLLKPGGVLVLTLVL 106
rADc smart00650
Ribosomal RNA adenine dimethylases;
73-176 8.05e-03

Ribosomal RNA adenine dimethylases;


Pssm-ID: 128898  Cd Length: 169  Bit Score: 35.56  E-value: 8.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748    73 AGSGGLgLEALSRYAQQVTLIEMDRGAADQLKKnlTTLGSSQGQVIQADAVSWlQGPATPFDLVFLDPPF-------RRe 145
Cdd:smart00650  22 PGKGAL-TEELLERAKRVTAIEIDPRLAPRLRE--KFAAADNLTVIHGDALKF-DLPKLQPYKVVGNLPYnistpilFK- 96

                           90       100       110
                   ....*....|....*....|....*....|.
gi 752540748   146 llpqvceLLEQRGWLASDALIYlerEKEMAD 176
Cdd:smart00650  97 -------LLEEPPAFRDAVLMV---QKEVAR 117
 
Name Accession Description Interval E-value
rsmD PRK10909
16S rRNA m(2)G966-methyltransferase; Provisional
 13-203 1.21e-97

16S rRNA m(2)G966-methyltransferase; Provisional


Pssm-ID: 236793  Cd Length: 199  Bit Score: 281.99  E-value: 1.21e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  13 KSPAPQGrAGVVRIISGQWKGRKLPVRDVEGLRPTTDRVKETIFNWLAPHVRGTRCLDLFAGSGGLGLEALSRYAQQVTL 92
Cdd:PRK10909   3 KKPNHSG-SGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  93 IEMDRGAADQLKKNLTTLGSSQGQVIQADAVSWLQGPATPFDLVFLDPPFRRELLPQVCELLEQRGWLASDALIYLEREK 172
Cdd:PRK10909  82 LEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEV 161

                        170       180       190
                 ....*....|....*....|....*....|.
gi 752540748 173 EMADLTLPASWKLLKDKQAGQVCYQLYLRDT 203
Cdd:PRK10909 162 ENGLPTVPANWQLHREKVAGQVAYRLYIREA 192
RsmD COG0742
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA ...
 24-204 9.86e-95

16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440505 [Multi-domain]  Cd Length: 183  Bit Score: 273.88  E-value: 9.86e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  24 VRIISGQWKGRKLPVRDVEGLRPTTDRVKETIFNWLAPHVRGTRCLDLFAGSGGLGLEALSRYAQQVTLIEMDRGAADQL 103
Cdd:COG0742    1 MRIIGGKARGRKLKVPKGPGTRPTTDRVREALFNILGPDIEGARVLDLFAGSGALGLEALSRGAASVVFVEKDRKAAAVI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748 104 KKNLTTLG-SSQGQVIQADAVSWL-QGPATPFDLVFLDPPFRRELLPQVCELLEQRGWLASDALIYLEREKEMADLTLPA 181
Cdd:COG0742   81 RKNLEKLGlEDRARVIRGDALRFLkRLAGEPFDLVFLDPPYAKGLLEKALELLAENGLLAPGGLIVVEHSKREELPELPA 160

                        170       180
                 ....*....|....*....|...
gi 752540748 182 SWKLLKDKQAGQVCYQLYLRDTK 204
Cdd:COG0742  161 GLELLKERKYGDTRLSFYRREEE 183
Cons_hypoth95 pfam03602
Conserved hypothetical protein 95;
24-199 7.50e-81

Conserved hypothetical protein 95;


Pssm-ID: 427391 [Multi-domain]  Cd Length: 179  Bit Score: 238.68  E-value: 7.50e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748   24 VRIISGQWKGRKLPVRDVEGLRPTTDRVKETIFNWLAPHVRGTRCLDLFAGSGGLGLEALSRYAQQVTLIEMDRGAADQL 103
Cdd:pfam03602   1 MRIIGGKARGRKLKVPPGPGTRPTTDRVREALFNWLAPYIEGARVLDLFAGSGALGLEALSRGAKRVTLVEKDKRAVQIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  104 KKNLTTLGSSQGQVIQADAVSWLQ--GPATPFDLVFLDPPFRRELLPQVCELLEQRGWLASDALIYLEREKEMADLTLPA 181
Cdd:pfam03602  81 KENLQLLGLPGAVLVMDALLALLRlaGKGPVFDIVFLDPPYAKGLIEEVLDLLAEKGWLKPNALIYVETEKRGELPEQPG 160

                         170
                  ....*....|....*...
gi 752540748  182 SWKLLKDKQAGQVCYQLY 199
Cdd:pfam03602 161 NLELVREKKYGQTTLAFY 178
TIGR00095 TIGR00095
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of ...
 22-199 1.07e-67

16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 188022 [Multi-domain]  Cd Length: 190  Bit Score: 205.72  E-value: 1.07e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748   22 GVVRIISGQWKGRKLPVRDVEGLRPTTDRVKETIFNWLAPHVRGTRCLDLFAGSGGLGLEALSRYAQQVTLIEMDRGAAD 101
Cdd:TIGR00095   8 GKIRIIGGQYRGRKLKVPPGPSTRPTTDRVRESLFNILRPDIVGAHFLDLFAGSGALGLEALSRGAASAVFVEQDRKVAQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  102 QLKKNLTTLG-SSQGQVIQADAVSWLQGPA---TPFDLVFLDPPFRRELLPQVCELLEQRGWLASDALIYLEREKEMADL 177
Cdd:TIGR00095  88 TLKENLSTLKkSGEQATVLNDAVRALLFLAkkqTPFDIIYLDPPFNRGLLEALLELLGENKWLNPKGLIVVEYDRENELP 167

                         170       180
                  ....*....|....*....|..
gi 752540748  178 TLPASWKLLKDKQAGQVCYQLY 199
Cdd:TIGR00095 168 TVPETWSLLRQKVYGQSALRLY 189
AdoMet_MTases cd02440
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
 67-172 5.39e-16

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


Pssm-ID: 100107 [Multi-domain]  Cd Length: 107  Bit Score: 70.54  E-value: 5.39e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  67 RCLDLFAGSGGLGLEALSRYAQQVTLIEMDRGAADQLKKNLTTLGSSQGQVIQADAVSWLQGPATPFDLVFLDPPFRREL 146
Cdd:cd02440    1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80

                         90       100
                 ....*....|....*....|....*.
gi 752540748 147 LPQVCELLEQRGWLASDALIYLEREK 172
Cdd:cd02440   81 EDLARFLEEARRLLKPGGVLVLTLVL 106
RlmK COG1092
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure ...
 58-141 1.52e-14

23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure and biogenesis]; 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI is part of the Pathway/BioSystem: 23S rRNA modification


Pssm-ID: 440709 [Multi-domain]  Cd Length: 392  Bit Score: 70.98  E-value: 1.52e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  58 WLAPHVRGTRCLDLFAGSGGLGLEALSRYAQQVTLIEMDRGAADQLKKNLTTLG-SSQGQVIQADAVSWLQGPAT---PF 133
Cdd:COG1092  210 RVAELAKGKRVLNLFSYTGGFSVHAAAGGAKSVTSVDLSATALEWAKENAALNGlDDRHEFVQADAFDWLRELARegeRF 289


                 ....*...
gi 752540748 134 DLVFLDPP 141
Cdd:COG1092  290 DLIILDPP 297
TrmA COG2265
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure ...
 53-158 4.54e-14

tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 441866 [Multi-domain]  Cd Length: 377  Bit Score: 69.82  E-value: 4.54e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  53 ETIFNWLAPHvRGTRCLDLFAGSGGLGLeALSRYAQQVTLIEMDRGAADQLKKNLTTLGSSQGQVIQADAVSWL--QGPA 130
Cdd:COG2265  223 AAALEWLDLT-GGERVLDLYCGVGTFAL-PLARRAKKVIGVEIVPEAVEDARENARLNGLKNVEFVAGDLEEVLpeLLWG 300

                         90       100
                 ....*....|....*....|....*...
gi 752540748 131 TPFDLVFLDPPfRRELLPQVCELLEQRG 158
Cdd:COG2265  301 GRPDVVVLDPP-RAGAGPEVLEALAALG 327
COG2263 COG2263
Predicted RNA methylase [General function prediction only];
63-142 1.72e-08

Predicted RNA methylase [General function prediction only];


Pssm-ID: 441864 [Multi-domain]  Cd Length: 199  Bit Score: 52.21  E-value: 1.72e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  63 VRGTRCLDLFAGSGGLGLEALSRYAQQVTLIEMDRGAADQLKKNLTTLGSSQgQVIQADAVSWlqGPATPFDLVFLDPPF 142
Cdd:COG2263   44 IEGKTVLDLGCGTGMLAIGAALLGAKKVVGVDIDPEALEIARENAERLGVRV-DFIRADVTRI--PLGGSVDTVVMNPPF 120
TrmN6 COG4123
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ...
 40-145 2.09e-08

tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 443299 [Multi-domain]  Cd Length: 238  Bit Score: 52.45  E-value: 2.09e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  40 DVEGLRPTTDRVketIFNWLAPHVRGTRCLDLFAGSGGLGLEALSRYAQ-QVTLIEMDRGAADQLKKNLTTLG-SSQGQV 117
Cdd:COG4123   16 PRCGYRFGTDAV---LLAAFAPVKKGGRVLDLGTGTGVIALMLAQRSPGaRITGVEIQPEAAELARRNVALNGlEDRITV 92

                         90       100
                 ....*....|....*....|....*....
gi 752540748 118 IQADAVSWLQ-GPATPFDLVFLDPPFRRE 145
Cdd:COG4123   93 IHGDLKEFAAeLPPGSFDLVVSNPPYFKA 121
SmtA COG0500
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ...
 64-179 3.94e-08

SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 440266 [Multi-domain]  Cd Length: 199  Bit Score: 51.46  E-value: 3.94e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  64 RGTRCLDLFAGSGGLGLEALSRYAQQVTLIEMDRGAADQLKKNLTTLGSSQGQVIQADAVSWLQGPATPFDLVF------ 137
Cdd:COG0500   26 KGGRVLDLGCGTGRNLLALAARFGGRVIGIDLSPEAIALARARAAKAGLGNVEFLVADLAELDPLPAESFDLVVafgvlh 105

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 752540748 138 -LDPPFRRELLPQVCELLEQRGWL---ASDALIYLEREKEMADLTL 179
Cdd:COG0500  106 hLPPEEREALLRELARALKPGGVLllsASDAAAALSLARLLLLATA 151
RsmC COG2813
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA ...
 61-143 9.54e-08

16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA G1207 methylase RsmC is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 442062 [Multi-domain]  Cd Length: 191  Bit Score: 50.19  E-value: 9.54e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  61 PHVRGTRCLDLFAGSGGLGLEALSRYAQ-QVTLIEMDRGAADQLKKNLTTLGSSQGQVIQADAVSWLqgPATPFDLVFLD 139
Cdd:COG2813   46 PEPLGGRVLDLGCGYGVIGLALAKRNPEaRVTLVDVNARAVELARANAAANGLENVEVLWSDGLSGV--PDGSFDLILSN 123


                 ....
gi 752540748 140 PPFR 143
Cdd:COG2813  124 PPFH 127
Trm11 COG1041
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ...
 59-144 2.59e-07

tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440663 [Multi-domain]  Cd Length: 172  Bit Score: 48.79  E-value: 2.59e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  59 LAPHVRGTRCLDLFAGSGGLGLEALSRYAqQVTLIEMDRGAADQLKKNLTTLGSSQGQVIQADAVSwLQGPATPFDLVFL 138
Cdd:COG1041   21 LAGAKEGDTVLDPFCGTGTILIEAGLLGR-RVIGSDIDPKMVEGARENLEHYGYEDADVIRGDARD-LPLADESVDAIVT 98


                 ....*.
gi 752540748 139 DPPFRR 144
Cdd:COG1041   99 DPPYGR 104
Tam COG4106
Trans-aconitate methyltransferase [Energy production and conversion];
64-161 9.03e-07

Trans-aconitate methyltransferase [Energy production and conversion];


Pssm-ID: 443282 [Multi-domain]  Cd Length: 100  Bit Score: 45.58  E-value: 9.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  64 RGTRCLDLFAGSGGLGLEALSRYAQ-QVTLIEMDRGAADQLKKNLTTLgssqgQVIQADAVSWLqgPATPFDLVFL---- 138
Cdd:COG4106    1 PPRRVLDLGCGTGRLTALLAERFPGaRVTGVDLSPEMLARARARLPNV-----RFVVADLRDLD--PPEPFDLVVSnaal 73

                         90       100
                 ....*....|....*....|....*..
gi 752540748 139 ----DPPfrrELLPQVCELLEQRGWLA 161
Cdd:COG4106   74 hwlpDHA---ALLARLAAALAPGGVLA 97
rumB PRK03522
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC;
70-167 1.44e-06

23S rRNA (uracil(747)-C(5))-methyltransferase RlmC;


Pssm-ID: 235128 [Multi-domain]  Cd Length: 315  Bit Score: 47.56  E-value: 1.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  70 DLFAGSGGLGLeALSRYAQQVTLIEMDRGAADQLKKNLTTLGSSQGQVIQADAVSWLQGPATPFDLVFLDPPfRRELLPQ 149
Cdd:PRK03522 179 DLFCGVGGFGL-HCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP-RRGIGKE 256

                         90
                 ....*....|....*...
gi 752540748 150 VCELLEQrgwLASDALIY 167
Cdd:PRK03522 257 LCDYLSQ---MAPRFILY 271
MTS pfam05175
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit ...
 59-143 2.17e-06

Methyltransferase small domain; This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.


Pssm-ID: 428349 [Multi-domain]  Cd Length: 170  Bit Score: 46.04  E-value: 2.17e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748   59 LAPHV---RGTRCLDLFAGSGGLGLEALSRYAQQ-VTLIEMDRGAADQLKKNLTTLGSSQGQVIQADAVSwlQGPATPFD 134
Cdd:pfam05175  23 LLEHLpkdLSGKVLDLGCGAGVLGAALAKESPDAeLTMVDINARALESARENLAANGLENGEVVASDVYS--GVEDGKFD 100


                  ....*....
gi 752540748  135 LVFLDPPFR 143
Cdd:pfam05175 101 LIISNPPFH 109
RsmB COG0144
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and ...
 59-141 3.00e-06

16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 439914 [Multi-domain]  Cd Length: 441  Bit Score: 46.92  E-value: 3.00e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  59 LAPhVRGTRCLDLFAGSGG--LGLEALSRYAQQVTLIEMDRGAADQLKKNLTTLGSSQGQVIQADAVSWLQGPATPFDLV 136
Cdd:COG0144  245 LDP-KPGERVLDLCAAPGGktLHLAELMGNKGRVVAVDISEHRLKRLRENLARLGLSNVEVVVADARELLEWLPGKFDRV 323


                 ....*
gi 752540748 137 FLDPP 141
Cdd:COG0144  324 LLDAP 328
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
 69-154 3.13e-06

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 44.09  E-value: 3.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748   69 LDLFAGSGGLGLEALSRYAQQVTLIEMDRGAADQLKKNLTTLGsSQGQVIQADAVSwLQGPATPFDLVF-------LDPP 141
Cdd:pfam13649   2 LDLGCGTGRLTLALARRGGARVTGVDLSPEMLERARERAAEAG-LNVEFVQGDAED-LPFPDGSFDLVVssgvlhhLPDP 79

                          90
                  ....*....|...
gi 752540748  142 FRRELLPQVCELL 154
Cdd:pfam13649  80 DLEAALREIARVL 92
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
 51-138 4.99e-05

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 41.90  E-value: 4.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  51 VKETIFNWLAPHvRGTRCLDLFAGSGGLgLEALSRYAQQVTLIEMDRGAADQLKKNLTTLGsSQGQVIQADAvSWLQGPA 130
Cdd:COG2226   10 GREALLAALGLR-PGARVLDLGCGTGRL-ALALAERGARVTGVDISPEMLELARERAAEAG-LNVEFVVGDA-EDLPFPD 85


                 ....*...
gi 752540748 131 TPFDLVFL 138
Cdd:COG2226   86 GSFDLVIS 93
rlmL PRK11783
bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2)) ...
 58-141 7.30e-05

bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL;


Pssm-ID: 236981 [Multi-domain]  Cd Length: 702  Bit Score: 42.87  E-value: 7.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  58 WLAPHVRGTRCLDLF---------AGSGGlglealsryAQQVTLIEMDRGAADQLKKN--LTTLGSSQGQVIQADAVSWL 126
Cdd:PRK11783 532 MIGQMAKGKDFLNLFaytgtasvhAALGG---------AKSTTTVDMSNTYLEWAERNfaLNGLSGRQHRLIQADCLAWL 602

                         90
                 ....*....|....*
gi 752540748 127 QGPATPFDLVFLDPP 141
Cdd:PRK11783 603 KEAREQFDLIFIDPP 617
HemK COG2890
Methylase of polypeptide chain release factors [Translation, ribosomal structure and ...
 45-136 4.18e-04

Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis];


Pssm-ID: 442135 [Multi-domain]  Cd Length: 282  Bit Score: 40.13  E-value: 4.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  45 RPTTDRVKETIFNWLaPHVRGTRCLDLFAGSGGLGLEALSRYAQ-QVTLIEMDRGAADQLKKNLTTLG-SSQGQVIQADA 122
Cdd:COG2890   94 RPETEELVELALALL-PAGAPPRVLDLGTGSGAIALALAKERPDaRVTAVDISPDALAVARRNAERLGlEDRVRFLQGDL 172

                         90
                 ....*....|....
gi 752540748 123 VSWLQGPATpFDLV 136
Cdd:COG2890  173 FEPLPGDGR-FDLI 185
TrmR COG4122
tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; ...
 89-163 9.57e-04

tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; tRNA 5-hydroxyU34 O-methylase TrmR/YrrM is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 443298  Cd Length: 173  Bit Score: 38.63  E-value: 9.57e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 752540748  89 QVTLIEMDRGAADQLKKNLTTLG-SSQGQVIQADAVSWLQG-PATPFDLVFLD--PPFRRELLPQVCELLEQRGWLASD 163
Cdd:COG4122   43 RLTTIEIDPERAAIARENFARAGlADRIRLILGDALEVLPRlADGPFDLVFIDadKSNYPDYLELALPLLRPGGLIVAD 121
Cfa COG2230
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport ...
 65-161 1.30e-03

Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism];


Pssm-ID: 441831 [Multi-domain]  Cd Length: 158  Bit Score: 37.99  E-value: 1.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  65 GTRCLDLFAGSGGLGLEALSRYAQQVTLIEMDRGAADQLKKNLTTLG-SSQGQVIQADAVSWlqGPATPFDLVF------ 137
Cdd:COG2230   52 GMRVLDIGCGWGGLALYLARRYGVRVTGVTLSPEQLEYARERAAEAGlADRVEVRLADYRDL--PADGQFDAIVsigmfe 129

                         90       100
                 ....*....|....*....|....*
gi 752540748 138 -LDPPFRRELLPQVCELLEQRGWLA 161
Cdd:COG2230  130 hVGPENYPAYFAKVARLLKPGGRLL 154
Methyltrans_SAM pfam10672
S-adenosylmethionine-dependent methyltransferase; Members of this family are ...
 58-141 1.43e-03

S-adenosylmethionine-dependent methyltransferase; Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyze the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalyzed by the S-adenosylmethionine-dependent methyltransferases.


Pssm-ID: 287624 [Multi-domain]  Cd Length: 286  Bit Score: 38.71  E-value: 1.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748   58 WLAPHVRGTRCLDLFAGSGGLGLEALSRYAQQVTLIEMDRGAADQLKKNLTTLGSSQGQV--IQADAV-SWLQ-GPATPF 133
Cdd:pfam10672 117 WVQENAKGKNVLNLFAYTCGFSVAAIAGGASQVVNVDMARGSLNKGRDNHRLNGHDLGRVsfLGHDIFkSWGKiKKLGPY 196


                  ....*...
gi 752540748  134 DLVFLDPP 141
Cdd:pfam10672 197 DLVIIDPP 204
CobL COG2242
Precorrin-6B methylase 2 [Coenzyme transport and metabolism]; Precorrin-6B methylase 2 is part ...
 59-122 1.47e-03

Precorrin-6B methylase 2 [Coenzyme transport and metabolism]; Precorrin-6B methylase 2 is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441843 [Multi-domain]  Cd Length: 403  Bit Score: 38.61  E-value: 1.47e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 752540748  59 LAPHvRGTRCLDLFAGSGGLGLEALSRYAQ-QVTLIEMDRGAADQLKKNLTTLGSSQGQVIQADA 122
Cdd:COG2242  243 LALR-PGDVLWDIGAGSGSVSIEAARLAPGgRVYAIERDPERAALIRANARRFGVPNVEVVEGEA 306
COG4076 COG4076
Predicted RNA methylase [General function prediction only];
62-122 2.62e-03

Predicted RNA methylase [General function prediction only];


Pssm-ID: 443253 [Multi-domain]  Cd Length: 230  Bit Score: 37.71  E-value: 2.62e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 752540748  62 HVR-GTRCLDLFAGSGGLGLEALSRYAQQVTLIEMDRGAADQLKKNLTTLGSSQG-QVIQADA 122
Cdd:COG4076   32 VVKpGDVVLDIGTGSGLLSMLAARAGAKKVYAVEVNPDIAAVARRIIAANGLSDRiTVINADA 94
TRM1 COG1867
tRNA G26 N,N-dimethylase Trm1 [Translation, ribosomal structure and biogenesis]; tRNA G26 N, ...
 69-142 2.89e-03

tRNA G26 N,N-dimethylase Trm1 [Translation, ribosomal structure and biogenesis]; tRNA G26 N,N-dimethylase Trm1 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 441472  Cd Length: 383  Bit Score: 37.93  E-value: 2.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  69 LDLFAGSGGLGLealsRYA----QQVTLIEMDRGAADQLKKNLTTLGSSQGQVIQADAVSWLQGPATPFDLVFLDP---- 140
Cdd:COG1867   62 LDALAASGIRGL----RYAlevgIKVTLNDIDPEAVELIRENLELNGLEDVEVYNRDANALLHELGRRFDVVDLDPfgsp 137


                 ...
gi 752540748 141 -PF 142
Cdd:COG1867  138 aPF 140
COG4262 COG4262
Predicted spermidine synthase with an N-terminal membrane domain [General function prediction ...
 74-141 3.16e-03

Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only];


Pssm-ID: 443404 [Multi-domain]  Cd Length: 426  Bit Score: 37.92  E-value: 3.16e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 752540748  74 GSGGLGLEALSRY--AQQVTLIEMD-------RGAADQLKKNLTTLGSSQGQVIQADAVSWLQGPATPFDLVFLDPP 141
Cdd:COG4262  295 GGDGLAAREVLKYpdVESVTLVDLDpevtdlaKTNPFLRELNGGALNDPRVTVVNADAFQFLRETDEKYDVIIVDLP 371
PRK15128 PRK15128
23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI;
62-141 3.47e-03

23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI;


Pssm-ID: 185082 [Multi-domain]  Cd Length: 396  Bit Score: 37.51  E-value: 3.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  62 HVRGTRCLDLFAGSGGLGLEALSRYAQQVTLIEMDRGAADQLKKN--LTTLGSSQGQVIQADAVSWLQG---PATPFDLV 136
Cdd:PRK15128 218 YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNveLNKLDLSKAEFVRDDVFKLLRTyrdRGEKFDVI 297


                 ....*
gi 752540748 137 FLDPP 141
Cdd:PRK15128 298 VMDPP 302
PRK03612 PRK03612
polyamine aminopropyltransferase;
59-141 3.57e-03

polyamine aminopropyltransferase;


Pssm-ID: 235139 [Multi-domain]  Cd Length: 521  Bit Score: 37.51  E-value: 3.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  59 LAPHVRGTRCLDLfaGSG-GLGLEALSRYAQ--QVTLIEMDRGAADQLKKNLTTLGSSQG-------QVIQADAVSWLQG 128
Cdd:PRK03612 292 MAASARPRRVLVL--GGGdGLALREVLKYPDveQVTLVDLDPAMTELARTSPALRALNGGalddprvTVVNDDAFNWLRK 369

                         90
                 ....*....|...
gi 752540748 129 PATPFDLVFLDPP 141
Cdd:PRK03612 370 LAEKFDVIIVDLP 382
PRK08287 PRK08287
decarboxylating cobalt-precorrin-6B (C(15))-methyltransferase;
63-138 4.25e-03

decarboxylating cobalt-precorrin-6B (C(15))-methyltransferase;


Pssm-ID: 181354  Cd Length: 187  Bit Score: 36.90  E-value: 4.25e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 752540748  63 VRGTRCLDLFAGSGGLGLEALSRYAQ-QVTLIEMDRGAADQLKKNLTTLGSSQGQVIQADAVSWLQGPAtpfDLVFL 138
Cdd:PRK08287  30 HRAKHLIDVGAGTGSVSIEAALQFPSlQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKA---DAIFI 103
RrnaAD pfam00398
Ribosomal RNA adenine dimethylase;
69-143 4.88e-03

Ribosomal RNA adenine dimethylase;


Pssm-ID: 395321 [Multi-domain]  Cd Length: 263  Bit Score: 36.96  E-value: 4.88e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 752540748   69 LDLFAGSGGLGlEALSRYAQQVTLIEMDRGAADQLKKNLttLGSSQGQVIQADAVSWlqgpATPFDLVFLDPPFR 143
Cdd:pfam00398  35 LEIGPGKGALT-VILAKRAKQVVAIEIDPRLAKLLQKKL--SLDENLTVIHQDFLKF----EFPSLVTHIHQEFL 102
rumA PRK13168
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;
58-157 5.06e-03

23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;


Pssm-ID: 237291 [Multi-domain]  Cd Length: 443  Bit Score: 37.06  E-value: 5.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748  58 WLAPHvRGTRCLDLFAGSGGLGLeALSRYAQQVTLIEMDRGAADQLKKNLTTLGSSQGQVIQAD------AVSWLQGPat 131
Cdd:PRK13168 292 WLDPQ-PGDRVLDLFCGLGNFTL-PLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANleedftDQPWALGG-- 367

                         90       100       110
                 ....*....|....*....|....*....|
gi 752540748 132 pFDLVFLDPPfrR----ELLPQVCELLEQR 157
Cdd:PRK13168 368 -FDKVLLDPP--RagaaEVMQALAKLGPKR 394
PRK14967 PRK14967
putative methyltransferase; Provisional
 65-142 5.40e-03

putative methyltransferase; Provisional


Pssm-ID: 184931 [Multi-domain]  Cd Length: 223  Bit Score: 36.57  E-value: 5.40e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 752540748  65 GTRCLDLFAGSGGLGLEALSRYAQQVTLIEMDRGAADQLKKNlTTLGSSQGQVIQADAVSWLQGpaTPFDLVFLDPPF 142
Cdd:PRK14967  37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLN-ALLAGVDVDVRRGDWARAVEF--RPFDVVVSNPPY 111
rADc smart00650
Ribosomal RNA adenine dimethylases;
73-176 8.05e-03

Ribosomal RNA adenine dimethylases;


Pssm-ID: 128898  Cd Length: 169  Bit Score: 35.56  E-value: 8.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752540748    73 AGSGGLgLEALSRYAQQVTLIEMDRGAADQLKKnlTTLGSSQGQVIQADAVSWlQGPATPFDLVFLDPPF-------RRe 145
Cdd:smart00650  22 PGKGAL-TEELLERAKRVTAIEIDPRLAPRLRE--KFAAADNLTVIHGDALKF-DLPKLQPYKVVGNLPYnistpilFK- 96

                           90       100       110
                   ....*....|....*....|....*....|.
gi 752540748   146 llpqvceLLEQRGWLASDALIYlerEKEMAD 176
Cdd:smart00650  97 -------LLEEPPAFRDAVLMV---QKEVAR 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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