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Conserved domains on  [gi|754307681|ref|WP_041854959|]
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MULTISPECIES: hypothetical protein [Xanthomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AcrA super family cl34052
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope ...
 13-69 7.48e-04

Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms];


The actual alignment was detected with superfamily member COG0845:

Pssm-ID: 440606 [Multi-domain]  Cd Length: 324  Bit Score: 35.69  E-value: 7.48e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 754307681  13 VVGPGEVVELRPLVIARDLGHVVELSEQLDQTLRIVNSAPEGLASGDRVRIVASRAA 69
Cdd:COG0845  268 VVDADGKVERRPVTLGRRDGDQVEVLSGLKAGDRVVVSGLQRLRDGAKVRVVEAAAP 324
 
Name Accession Description Interval E-value
AcrA COG0845
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope ...
 13-69 7.48e-04

Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms];


Pssm-ID: 440606 [Multi-domain]  Cd Length: 324  Bit Score: 35.69  E-value: 7.48e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 754307681  13 VVGPGEVVELRPLVIARDLGHVVELSEQLDQTLRIVNSAPEGLASGDRVRIVASRAA 69
Cdd:COG0845  268 VVDADGKVERRPVTLGRRDGDQVEVLSGLKAGDRVVVSGLQRLRDGAKVRVVEAAAP 324
 
Name Accession Description Interval E-value
AcrA COG0845
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope ...
 13-69 7.48e-04

Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms];


Pssm-ID: 440606 [Multi-domain]  Cd Length: 324  Bit Score: 35.69  E-value: 7.48e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 754307681  13 VVGPGEVVELRPLVIARDLGHVVELSEQLDQTLRIVNSAPEGLASGDRVRIVASRAA 69
Cdd:COG0845  268 VVDADGKVERRPVTLGRRDGDQVEVLSGLKAGDRVVVSGLQRLRDGAKVRVVEAAAP 324
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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