|
Name |
Accession |
Description |
Interval |
E-value |
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-237 |
1.51e-173 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 476.68 E-value: 1.51e-173
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMRE 80
Cdd:PRK11614 1 MEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVAIVPEGRRVFSRMTVEENLAMGGFFADRSQYQERIQRVYDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160
Cdd:PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 161 LDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVRSAYLGG 237
Cdd:PRK11614 161 LDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAYLGG 237
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
5-237 |
8.81e-139 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 388.57 E-value: 8.81e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVAI 84
Cdd:COG0410 3 MLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLGIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRMTVEENLAMGGFFA-DRSQYQERIQRVYDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
Cdd:COG0410 83 VPEGRRIFPSLTVEENLLLGAYARrDRAEVRADLERVYELFPRLKERRRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDE 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 754513351 164 PSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVRSAYLGG 237
Cdd:COG0410 163 PSLGLAPLIVEEIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPEVREAYLGV 236
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
6-227 |
2.42e-123 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 349.04 E-value: 2.42e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVAIV 85
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 PEGRRVFSRMTVEENLAMGGFFADRSQYQERIQRVYDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
Cdd:cd03224 81 PEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754513351 166 LGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLAN 227
Cdd:cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
6-235 |
8.60e-76 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 228.95 E-value: 8.60e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVAIV 85
Cdd:TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 PEGRRVFSRMTVEENLAMGgFFADRSQYQERIQRVYDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
Cdd:TIGR03410 81 PQGREIFPRLTVEENLLTG-LAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 754513351 166 LGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALlaNEAVRSAYL 235
Cdd:TIGR03410 160 EGIQPSIIKDIGRVIRRLRAEgGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL--DEDKVRRYL 228
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
4-237 |
4.15e-66 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 204.89 E-value: 4.15e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 4 VMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVA 83
Cdd:COG0411 3 PLLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLGIA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 ----IVpegrRVFSRMTVEENLAMG--------------GFFADRSQYQERIQRVYDL--FPRLHERRIQRAGTMSGGEQ 143
Cdd:COG0411 83 rtfqNP----RLFPELTVLENVLVAaharlgrgllaallRLPRARREEREARERAEELleRVGLADRADEPAGNLSYGQQ 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 144 QMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGE 222
Cdd:COG0411 159 RRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDErGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPA 238
|
250
....*....|....*
gi 754513351 223 ALLANEAVRSAYLGG 237
Cdd:COG0411 239 EVRADPRVIEAYLGE 253
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
6-226 |
9.35e-61 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 190.66 E-value: 9.35e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAkiMREAVAIV 85
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAE--VRRRIGYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 PEGRRVFSRMTVEENLA-MGGFF-ADRSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
Cdd:COG1131 79 PQEPALYPDLTVRENLRfFARLYgLPRKEARERIDELLELF-GLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754513351 164 PSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLA 226
Cdd:COG1131 158 PTSGLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKA 220
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
6-230 |
8.37e-60 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 188.41 E-value: 8.37e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVaiv 85
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 peGR-----RVFSRMTVEENLAMGG---------FFADRSQYQERIQRVYDL--FPRLHERRIQRAGTMSGGEQQMLAIG 149
Cdd:cd03219 78 --GRtfqipRLFPELTVLENVMVAAqartgsgllLARARREEREARERAEELleRVGLADLADRPAGELSYGQQRRLEIA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEA 229
Cdd:cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPR 235
|
.
gi 754513351 230 V 230
Cdd:cd03219 236 V 236
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
15-236 |
2.60e-55 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 176.58 E-value: 2.60e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 15 YGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94
Cdd:cd03218 10 YGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 95 MTVEENL--AMGGFFADRSQYQERIQRVYDLFPRLHERRiQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPII 172
Cdd:cd03218 90 LTVEENIlaVLEIRGLSKKEREEKLEELLEEFHITHLRK-SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIA 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 754513351 173 IQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVRSAYLG 236
Cdd:cd03218 169 VQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVYLG 232
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
5-228 |
2.30e-53 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 171.96 E-value: 2.30e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDIT-DWQTAkimREAVA 83
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRkEPREA---RRQIG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 IVPEGRRVFSRMTVEENLAmggFFA-----DRSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL 158
Cdd:COG4555 78 VLPDERGLYDRLTVRENIR---YFAelyglFDEELKKRIEELIELL-GLEEFLDRRVGELSTGMKKKVALARALVHDPKV 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 159 LLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANE 228
Cdd:COG4555 154 LLLDEPTNGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEI 223
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
5-236 |
9.60e-51 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 165.20 E-value: 9.60e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVAI 84
Cdd:COG1137 3 TLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARLGIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRMTVEENL--AMGGFFADRSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162
Cdd:COG1137 83 LPQEASIFRKLTVEDNIlaVLELRKLSKKEREERLEELLEEF-GITHLRKSKAYSLSGGERRRVEIARALATNPKFILLD 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 754513351 163 EPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVRSAYLG 236
Cdd:COG1137 162 EPFAGVDPIAVADIQKIIRHLKERGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEILNNPLVRKVYLG 235
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
6-236 |
7.88e-50 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 162.83 E-value: 7.88e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVAIV 85
Cdd:TIGR04406 2 LVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLGIGYL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 PEGRRVFSRMTVEENLAMGGFFADRSQYQERIQRVYDLFPRLHERRI--QRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
Cdd:TIGR04406 82 PQEASIFRKLTVEENIMAVLEIRKDLDRAEREERLEALLEEFQISHLrdNKAMSLSGGERRRVEIARALATNPKFILLDE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754513351 164 PSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVRSAYLG 236
Cdd:TIGR04406 162 PFAGVDPIAVGDIKKIIKHLKERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVANEKVRRVYLG 234
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
6-215 |
1.46e-49 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 159.87 E-value: 1.46e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDItdWQTAKIMREAVAIV 85
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDI--KKEPEEVKRRIGYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 PEGRRVFSRMTVEENLamggffadrsqyqeriqrvydlfprlherriqragTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
Cdd:cd03230 79 PEEPSLYENLTVRENL-----------------------------------KLSGGMKQRLALAQALLHDPELLILDEPT 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 754513351 166 LGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHV 215
Cdd:cd03230 124 SGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
5-234 |
1.49e-49 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 162.52 E-value: 1.49e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMReAVAI 84
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELAR-RIAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRMTVEENLAMG-----GFFADRSQY-QERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL 158
Cdd:COG1120 80 VPQEPPAPFGLTVRELVALGryphlGLFGRPSAEdREAVEEALERT-GLEHLADRPVDELSGGERQRVLIARALAQEPPL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 159 LLLDEPSLGLAPIIIQQIFDTIEQL-RKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVRSAY 234
Cdd:COG1120 159 LLLDEPTSHLDLAHQLEVLELLRRLaRERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVLTPELLEEVY 235
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
6-228 |
1.10e-48 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 159.42 E-value: 1.10e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHY-GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKImREAVAI 84
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLREL-RRKVGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 V---PEgRRVFSrMTVEENLAMG----GFfaDRSQYQERIQRVYDLF--PRLHERRIQRagtMSGGEQQMLAIGRALMSQ 155
Cdd:COG1122 80 VfqnPD-DQLFA-PTVEEDVAFGpenlGL--PREEIRERVEEALELVglEHLADRPPHE---LSGGQKQRVAIAGVLAME 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754513351 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANE 228
Cdd:COG1122 153 PEVLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDY 225
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
7-214 |
3.15e-48 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 158.01 E-value: 3.15e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 7 SFDRVSAHY--GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKImREAVAI 84
Cdd:cd03225 1 ELKNLSFSYpdGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKEL-RRKVGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 V---PEGRrvFSRMTVEENLAmggfFA------DRSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155
Cdd:cd03225 80 VfqnPDDQ--FFGPTVEEEVA----FGlenlglPEEEIEERVEEALELV-GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 754513351 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGH 214
Cdd:cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-234 |
9.51e-46 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 152.55 E-value: 9.51e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwqtakiMRE 80
Cdd:COG1121 2 MMMPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRR------ARR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVAIVPEgRRVFSR---MTVEENLAMG-----GFF-----ADRSQYQERIQRVyDLFPRLHeRRIqraGTMSGGEQQMLA 147
Cdd:COG1121 76 RIGYVPQ-RAEVDWdfpITVRDVVLMGrygrrGLFrrpsrADREAVDEALERV-GLEDLAD-RPI---GELSGGQQQRVL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 148 IGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLeNGHVVLEDTGEALLAN 227
Cdd:COG1121 150 LARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRVLLL-NRGLVAHGPPEEVLTP 228
|
....*..
gi 754513351 228 EAVRSAY 234
Cdd:COG1121 229 ENLSRAY 235
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
6-216 |
1.37e-44 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 148.44 E-value: 1.37e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAkimREAVAIV 85
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE---RRNIGMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 PEGRRVFSRMTVEENLAMGGFFA--DRSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
Cdd:cd03259 78 FQDYALFPHLTVAENIAFGLKLRgvPKAEIRARVRELLELV-GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 754513351 164 PSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:cd03259 157 PLSALDAKLREELREELKELQRElGITTIYVTHDQEEALALADRIAVMNEGRIV 210
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
6-214 |
2.57e-44 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 146.56 E-value: 2.57e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITD-WQTAKIMREAVAI 84
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDlEDELPPLRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRMTVEENLAMGgffadrsqyqeriqrvydlfprlherriqragtMSGGEQQMLAIGRALMSQPRLLLLDEP 164
Cdd:cd03229 81 VFQDFALFPHLTVLENIALG---------------------------------LSGGQQQRVALARALAMDPDVLLLDEP 127
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 754513351 165 SLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGH 214
Cdd:cd03229 128 TSALDPITRREVRALLKSLQAQlGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
6-216 |
5.54e-43 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 145.02 E-value: 5.54e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG-----DPRASTGKIVFDGKDITDWQTAKI-MR 79
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRlndliPGAPDEGEVLLDGKDIYDLDVDVLeLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 80 EAVAIVPEGRRVFsRMTVEENLAMGGFFADRSQYQERIQRVYD------LFPRLHERriQRAGTMSGGEQQMLAIGRALM 153
Cdd:cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEalrkaaLWDEVKDR--LHALGLSGGQQQRLCLARALA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754513351 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEgMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:cd03260 158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLV 219
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
6-215 |
1.26e-42 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 143.78 E-value: 1.26e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYG----KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDW---QTAKIM 78
Cdd:cd03255 1 IELKNLSKTYGgggeKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLsekELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 79 REAVAIVPEGRRVFSRMTVEENLAMGGFFAdRSQYQERIQRVYDLFPRLH--ERRIQRAGTMSGGEQQMLAIGRALMSQP 156
Cdd:cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLA-GVPKKERRERAEELLERVGlgDRLNHYPSELSGGQQQRVAIARALANDP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 157 RLLLLDEPSLGLAPIIIQQIFDTIEQL-RKEGMTIFLVEQNaNQALKLADRGYVLENGHV 215
Cdd:cd03255 160 KIILADEPTGNLDSETGKEVMELLRELnKEAGTTIVVVTHD-PELAEYADRIIELRDGKI 218
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
1-216 |
3.68e-42 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 142.29 E-value: 3.68e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSfdrvsahYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwqtakiMRE 80
Cdd:cd03235 2 VEDLTVS-------YGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK------ERK 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVAIVPEgRRVFSR---MTVEENLAMG-----GFF-----ADRSQYQERIQRVyDLFpRLHERRIqraGTMSGGEQQMLA 147
Cdd:cd03235 69 RIGYVPQ-RRSIDRdfpISVRDVVLMGlyghkGLFrrlskADKAKVDEALERV-GLS-ELADRQI---GELSGGQQQRVL 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 754513351 148 IGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRgYVLENGHVV 216
Cdd:cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDR-VLLLNRTVV 210
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
5-216 |
4.83e-42 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 142.50 E-value: 4.83e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHY-GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKI--MREA 81
Cdd:COG2884 1 MIRFENVSKRYpGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIpyLRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 82 VAIVPEGRRVFSRMTVEENLA-----MGgffADRSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156
Cdd:COG2884 81 IGVVFQDFRLLPDRTVYENVAlplrvTG---KSRKEIRRRVREVLDLV-GLSDKAKALPHELSGGEQQRVAIARALVNRP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:COG2884 157 ELLLADEPTGNLDPETSWEIMELLEEINRRGTTVLIATHDLELVDRMPKRVLELEDGRLV 216
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
6-224 |
1.71e-41 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 141.55 E-value: 1.71e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYG-KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKI--MREAV 82
Cdd:cd03256 1 IEVENLSKTYPnGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALrqLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 AIVPEGRRVFSRMTVEENLaMGGFFADRSQYQ--------ERIQRVYDLFPR--LHERRIQRAGTMSGGEQQMLAIGRAL 152
Cdd:cd03256 81 GMIFQQFNLIERLSVLENV-LSGRLGRRSTWRslfglfpkEEKQRALAALERvgLLDKAYQRADQLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754513351 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEAL 224
Cdd:cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREeGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-236 |
4.97e-41 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 140.64 E-value: 4.97e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMRE 80
Cdd:COG4674 6 MHGPILYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDEHEIARL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVaivpeGR-----RVFSRMTVEENL--AMGG-------FFADRSQYQ-ERIQRVYDLFpRLHERRIQRAGTMSGGEQQM 145
Cdd:COG4674 86 GI-----GRkfqkpTVFEELTVFENLelALKGdrgvfasLFARLTAEErDRIEEVLETI-GLTDKADRLAGLLSHGQKQW 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEgMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALL 225
Cdd:COG4674 160 LEIGMLLAQDPKLLLLDEPVAGMTDAETERTAELLKSLAGK-HSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGSLDEVQ 238
|
250
....*....|.
gi 754513351 226 ANEAVRSAYLG 236
Cdd:COG4674 239 ADPRVIEVYLG 249
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-216 |
1.33e-40 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 138.64 E-value: 1.33e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENvMLSFDRVSAHYG----KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDW---Q 73
Cdd:COG1136 1 MSP-LLELRNLTKSYGtgegEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLserE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 74 TAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFADRSqYQERIQRVYDLFPR--LHERRIQRAGTMSGGEQQMLAIGRA 151
Cdd:COG1136 80 LARLRRRHIGFVFQFFNLLPELTALENVALPLLLAGVS-RKERRERARELLERvgLGDRLDHRPSQLSGGQQQRVAIARA 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754513351 152 LMSQPRLLLLDEP--SL----GlapiiiQQIFDTIEQLRKE-GMTIFLVEQNANQAlKLADRGYVLENGHVV 216
Cdd:COG1136 159 LVNRPKLILADEPtgNLdsktG------EEVLELLRELNRElGTTIVMVTHDPELA-ARADRVIRLRDGRIV 223
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-224 |
1.63e-40 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 141.77 E-value: 1.63e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwqtakimre 80
Cdd:COG3842 1 MAMPALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTG--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 avaIVPEGRRV---------FSRMTVEENLA----MGGFfaDRSQYQERIQRVYDLF--PRLHERRIqraGTMSGGEQQM 145
Cdd:COG3842 72 ---LPPEKRNVgmvfqdyalFPHLTVAENVAfglrMRGV--PKAEIRARVAELLELVglEGLADRYP---HQLSGGQQQR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 146 LAIGRALMSQPRLLLLDEPSLGL-APIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEAL 224
Cdd:COG3842 144 VALARALAPEPRVLLLDEPLSALdAKLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPEEI 223
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
21-164 |
1.97e-40 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 135.85 E-value: 1.97e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwQTAKIMREAVAIVPEGRRVFSRMTVEEN 100
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTD-DERKSLRKEIGYVFQDPQLFPRLTVREN 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 754513351 101 LAMGG--FFADRSQYQERIQRV---YDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP 164
Cdd:pfam00005 80 LRLGLllKGLSKREKDARAEEAlekLGLGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEP 148
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
7-214 |
2.83e-40 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 135.84 E-value: 2.83e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 7 SFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKImREAVAIVP 86
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL-RRRIGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 87 EgrrvfsrmtveenlamggffadrsqyqeriqrvydlfprlherriqragtMSGGEQQMLAIGRALMSQPRLLLLDEPSL 166
Cdd:cd00267 80 Q--------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTS 109
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 754513351 167 GLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGH 214
Cdd:cd00267 110 GLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
11-218 |
5.56e-40 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 136.58 E-value: 5.56e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 11 VSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwqTAKIMREAVAIVpEGRR 90
Cdd:cd03268 6 LTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEALRRIGALI-EAPG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 91 VFSRMTVEENLAMGGFFADRSqyQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAP 170
Cdd:cd03268 83 FYPNLTARENLRLLARLLGIR--KKRIDEVLDVV-GLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 754513351 171 IIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218
Cdd:cd03268 160 DGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEE 207
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
15-224 |
1.19e-39 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 135.96 E-value: 1.19e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 15 YGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITdwQTAKIMREAVAIVPEGRRVFSR 94
Cdd:cd03265 10 YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVV--REPREVRRRIGIVFQDLSVDDE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 95 MTVEENLAMGGFFAD--RSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPII 172
Cdd:cd03265 88 LTGWENLYIHARLYGvpGAERRERIDELLDFV-GLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQT 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 754513351 173 IQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEAL 224
Cdd:cd03265 167 RAHVWEYIEKLKEEfGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
6-215 |
2.84e-39 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 134.96 E-value: 2.84e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTA-KIMREAVAI 84
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNiNELRQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRMTVEENLAMGGFFADRSQYQERIQRVYDLFPR--LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162
Cdd:cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKvgLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 754513351 163 EPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHV 215
Cdd:cd03262 161 EPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
20-222 |
3.53e-39 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 135.98 E-value: 3.53e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 20 ALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREaVAivpegrRVF------- 92
Cdd:COG1101 21 ALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAKY-IG------RVFqdpmmgt 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 93 -SRMTVEENLAM----GGFF--------ADRSQYQERIQrvydlfpRLH---ERRI-QRAGTMSGGEQQMLAIGRALMSQ 155
Cdd:COG1101 94 aPSMTIEENLALayrrGKRRglrrgltkKRRELFRELLA-------TLGlglENRLdTKVGLLSGGQRQALSLLMATLTK 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 754513351 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQL-RKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGE 222
Cdd:COG1101 167 PKLLLLDEHTAALDPKTAALVLELTEKIvEENNLTTLMVTHNMEQALDYGNRLIMMHEGRIILDVSGE 234
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-234 |
6.11e-39 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 134.93 E-value: 6.11e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGK----IQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTaKIMRE 80
Cdd:COG1124 1 MLEVRNLSVSYGQggrrVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRR-KAFRR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVAIV---PEGrrvfS---RMTVEENLAMGGFFADRSQYQERIQRVYD---LFPRLHERRIQragTMSGGEQQMLAIGRA 151
Cdd:COG1124 80 RVQMVfqdPYA----SlhpRHTVDRILAEPLRIHGLPDREERIAELLEqvgLPPSFLDRYPH---QLSGGQRQRVAIARA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLAneAV 230
Cdd:COG1124 153 LILEPELLLLDEPTSALDVSVQAEILNLLKDLREErGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLA--GP 230
|
....
gi 754513351 231 RSAY 234
Cdd:COG1124 231 KHPY 234
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
6-218 |
1.41e-38 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 131.40 E-value: 1.41e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVAIV 85
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 pegrrvfsrmtveenlamggffadrsqYQeriqrvydlfprlherriqragtMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
Cdd:cd03216 81 ---------------------------YQ-----------------------LSVGERQMVEIARALARNARLLILDEPT 110
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 754513351 166 LGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218
Cdd:cd03216 111 AALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
4-227 |
3.53e-38 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 138.88 E-value: 3.53e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 4 VMLSFDRVSAHY-----GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKI- 77
Cdd:COG1123 259 PLLEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLr 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 78 -MREAVAIV---PEGrRVFSRMTVEENLAMGGFFADRSQYQERIQRVYDLFPR--LHERRIQR-AGTMSGGEQQMLAIGR 150
Cdd:COG1123 339 eLRRRVQMVfqdPYS-SLNPRMTVGDIIAEPLRLHGLLSRAERRERVAELLERvgLPPDLADRyPHELSGGQRQRVAIAR 417
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 754513351 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLAN 227
Cdd:COG1123 418 ALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRElGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFAN 495
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
2-218 |
7.10e-38 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 137.84 E-value: 7.10e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 2 ENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREA 81
Cdd:COG1129 1 AEPLLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDAQAAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 82 VAIVPEGRRVFSRMTVEENLAMG-----GFFADRSQYQERIQRVYDLF-----PRlherriQRAGTMSGGEQQMLAIGRA 151
Cdd:COG1129 81 IAIIHQELNLVPNLSVAENIFLGreprrGGLIDWRAMRRRARELLARLgldidPD------TPVGDLSVAQQQLVEIARA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218
Cdd:COG1129 155 LSRDARVLILDEPTASLTEREVERLFRIIRRLKAQGVAIIYISHRLDEVFEIADRVTVLRDGRLVGT 221
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
5-216 |
8.87e-38 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 131.47 E-value: 8.87e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHY----GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTA--KIM 78
Cdd:cd03257 1 LLEVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRlrKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 79 REAVAIVP-EGRRVFS-RMTVEENLAMGGFFADRSQYQERIQRVYDLFPR---LHERRIQR-AGTMSGGEQQMLAIGRAL 152
Cdd:cd03257 81 RKEIQMVFqDPMSSLNpRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVgvgLPEEVLNRyPHELSGGQRQRVAIARAL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 754513351 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEElGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
11-216 |
1.18e-37 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 129.86 E-value: 1.18e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 11 VSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREaVAIVPEgrr 90
Cdd:cd03214 5 LSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK-IAYVPQ--- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 91 VFSRMTVEEnlamggfFADRsqyqeriqrvydlfprlherriqRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAP 170
Cdd:cd03214 81 ALELLGLAH-------LADR-----------------------PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI 130
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 754513351 171 IIIQQIFDTIEQL-RKEGMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:cd03214 131 AHQIELLELLRRLaRERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-236 |
2.57e-37 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 131.27 E-value: 2.57e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMRE 80
Cdd:PRK11300 1 MSQPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVAIVPEGRRVFSRMTVEENLAMG-------GFFAD-------RSQYQERIQRVYDLFPR--LHERRIQRAGTMSGGEQQ 144
Cdd:PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAqhqqlktGLFSGllktpafRRAESEALDRAATWLERvgLLEHANRQAGNLAYGQQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEA 223
Cdd:PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEhNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240
|
250
....*....|...
gi 754513351 224 LLANEAVRSAYLG 236
Cdd:PRK11300 241 IRNNPDVIKAYLG 253
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
6-214 |
1.23e-36 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 126.73 E-value: 1.23e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYG--KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKImREAVA 83
Cdd:cd03228 1 IEFKNVSFSYPgrPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESL-RKNIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 IVPEGRRVFSrMTVEENLamggffadrsqyqeriqrvydlfprlherriqragtMSGGEQQMLAIGRALMSQPRLLLLDE 163
Cdd:cd03228 80 YVPQDPFLFS-GTIRENI------------------------------------LSGGQRQRIAIARALLRDPPILILDE 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 754513351 164 PSLGLAPIIIQQIFDTIEQLRKeGMTIFLVEQNANqALKLADRGYVLENGH 214
Cdd:cd03228 123 ATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRDADRIIVLDDGR 171
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
5-227 |
1.35e-36 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 128.67 E-value: 1.35e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAK--IMREAv 82
Cdd:PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDErlIRQEA- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 AIVPEGRRVFSRMTVEENLAMGGFFADRSQYQERIQRVYDLFPR--LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160
Cdd:PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKvgLAERAHHYPSELSGGQQQRVAIARALAVKPKLML 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 161 LDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLAN 227
Cdd:PRK09493 160 FDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-216 |
1.63e-36 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 129.00 E-value: 1.63e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 2 ENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG--D--PRAS-TGKIVFDGKDITDWQTAk 76
Cdd:COG1117 8 LEPKIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRmnDliPGARvEGEILLDGEDIYDPDVD- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 77 imreavaiVPEGRR----VFSR-----MTVEENLAMG----GFfADRSQYQERIQR----------VYDlfpRLHerriQ 133
Cdd:COG1117 87 --------VVELRRrvgmVFQKpnpfpKSIYDNVAYGlrlhGI-KSKSELDEIVEEslrkaalwdeVKD---RLK----K 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 134 RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEgMTIFLVEQNANQALKLADRGYVLENG 213
Cdd:COG1117 151 SALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKD-YTIVIVTHNMQQAARVSDYTAFFYLG 229
|
...
gi 754513351 214 HVV 216
Cdd:COG1117 230 ELV 232
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
5-234 |
1.77e-36 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 129.08 E-value: 1.77e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKI--MReav 82
Cdd:COG4559 1 MLEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELarRR--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 AIVPEgrrvFSRM----TVEENLAMG--GFFADRSQYQERIQRVYDLFPRLH--ERRIQragTMSGGEQQMLAIGRAL-- 152
Cdd:COG4559 78 AVLPQ----HSSLafpfTVEEVVALGraPHGSSAAQDRQIVREALALVGLAHlaGRSYQ---TLSGGEQQRVQLARVLaq 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 153 -----MSQPRLLLLDEP--SLGLAPiiIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALL 225
Cdd:COG4559 151 lwepvDGGPRWLFLDEPtsALDLAH--QHAVLRLARQLARRGGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEVL 228
|
....*....
gi 754513351 226 ANEAVRSAY 234
Cdd:COG4559 229 TDELLERVY 237
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
5-227 |
2.30e-36 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 128.19 E-value: 2.30e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwQTAKI--MREAV 82
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTD-SKKDInkLRRKV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 AIVPEGRRVFSRMTVEENLAMGGFFADRSQYQERIQRVYDLFPR--LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160
Cdd:COG1126 80 GMVFQQFNLFPHLTVLENVTLAPIKVKKMSKAEAEERAMELLERvgLADKADAYPAQLSGGQQQRVAIARALAMEPKVML 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 161 LDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLAN 227
Cdd:COG1126 160 FDEPTSALDPELVGEVLDVMRDLAKEGMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEFFEN 226
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
6-236 |
2.77e-36 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 128.09 E-value: 2.77e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVAIV 85
Cdd:PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 PEGRRVFSRMTVEENLAMGGFFADRSQYQERIQRVYDLFPRLH--ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
Cdd:PRK10895 84 PQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHieHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754513351 164 PSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVRSAYLG 236
Cdd:PRK10895 164 PFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLG 236
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
5-220 |
3.84e-36 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 129.07 E-value: 3.84e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKI--Mreav 82
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDRRRIgyL---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 aivPEGRRVFSRMTVEENLAmggFFA-----DRSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPR 157
Cdd:COG4152 77 ---PEERGLYPKMKVGEQLV---YLArlkglSKAEAKRRADEWLERL-GLGDRANKKVEELSKGNQQKVQLIAALLHDPE 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754513351 158 LLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDT 220
Cdd:COG4152 150 LLILDEPFSGLDPVNVELLKDVIRELAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGS 212
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-231 |
3.96e-36 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 127.40 E-value: 3.96e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKimRE 80
Cdd:COG1127 1 MSEPMIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKE--LY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVAivpegRRV---------FSRMTVEENLAmggfFA-------DRSQYQER----IQRV-----YDLFPrlHErriqra 135
Cdd:COG1127 79 ELR-----RRIgmlfqggalFDSLTVFENVA----FPlrehtdlSEAEIRELvlekLELVglpgaADKMP--SE------ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 136 gtMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGH 214
Cdd:COG1127 142 --LSGGMRKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDElGLTSVVVTHDLDSAFAIADRVAVLADGK 219
|
250
....*....|....*....
gi 754513351 215 VVLEDTGEALLA--NEAVR 231
Cdd:COG1127 220 IIAEGTPEELLAsdDPWVR 238
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
6-215 |
6.52e-36 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 126.08 E-value: 6.52e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG-DPRAStGKIVFDGKDITDWQTAKImREAVAI 84
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADlDPPTS-GEIYLDGKPLSAMPPPEW-RRQVAY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEgRRVFSRMTVEENLAMGGFFADRSQYQERIQrvyDLFPRLH------ERRIQRagtMSGGEQQMLAIGRALMSQPRL 158
Cdd:COG4619 79 VPQ-EPALWGGTVRDNLPFPFQLRERKFDRERAL---ELLERLGlppdilDKPVER---LSGGERQRLALIRALLLQPDV 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 754513351 159 LLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHV 215
Cdd:COG4619 152 LLLDEPTSALDPENTRRVEELLREYLAEeGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
6-232 |
9.91e-36 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 126.46 E-value: 9.91e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTA--KIMREAVA 83
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAelYRLRRRMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 IVPEGRRVFSRMTVEENLAM-----GGFFAD--RSQYQERIQRVydlfpRLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156
Cdd:cd03261 81 MLFQSGALFDSLTVFENVAFplrehTRLSEEeiREIVLEKLEAV-----GLRGAEDLYPAELSGGMKKRVALARALALDP 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 754513351 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLA--NEAVRS 232
Cdd:cd03261 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKElGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAsdDPLVRQ 234
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-227 |
1.14e-35 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 131.95 E-value: 1.14e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVmLSFDRVSAHY--GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG---DPRASTGKIVFDGKDITDWqTA 75
Cdd:COG1123 1 MTPL-LEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGllpHGGRISGEVLLDGRDLLEL-SE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 76 KIMREAVAIVP-EGRRVFSRMTVEENLAMG--GFFADRSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRAL 152
Cdd:COG1123 79 ALRGRRIGMVFqDPMTQLNPVTVGDQIAEAleNLGLSRAEARARVLELLEAV-GLERRLDRYPHQLSGGQRQRVAIAMAL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLAN 227
Cdd:COG1123 158 ALDPDLLIADEPTTALDVTTQAEILDLLRELQRErGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAA 233
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
6-216 |
1.30e-35 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 126.20 E-value: 1.30e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKimrEAVAIV 85
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHK---RPVNTV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 PEGRRVFSRMTVEENLAMGGFFA--DRSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
Cdd:cd03300 78 FQNYALFPHLTVFENIAFGLRLKklPKAEIKERVAEALDLV-QLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 754513351 164 PSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:cd03300 157 PLGALDLKLRKDMQLELKRLQKElGITFVFVTHDQEEALTMSDRIAVMNKGKIQ 210
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
6-228 |
1.50e-35 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 133.04 E-value: 1.50e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYG--KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKImREAVA 83
Cdd:COG2274 474 IELENVSFRYPgdSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASL-RRQIG 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 IVPEGRRVFSRmTVEENLAMGGFFADRSQYQERIQRV------------YDLfpRLHErriqRAGTMSGGEQQMLAIGRA 151
Cdd:COG2274 553 VVLQDVFLFSG-TIRENITLGDPDATDEEIIEAARLAglhdfiealpmgYDT--VVGE----GGSNLSGGQRQRLAIARA 625
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKeGMTIFLVEQNAnQALKLADRGYVLENGHVVLEDTGEALLANE 228
Cdd:COG2274 626 LLRNPRILILDEATSALDAETEAIILENLRRLLK-GRTVIIIAHRL-STIRLADRIIVLDKGRIVEDGTHEELLARK 700
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
4-234 |
1.78e-35 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 126.42 E-value: 1.78e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 4 VMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAK------I 77
Cdd:PRK13548 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAElarrraV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 78 MREAVAIvpegrrVFSrMTVEENLAMGgffadRSQYQERIQRVydlfPRLHERRIQRAG----------TMSGGEQQMLA 147
Cdd:PRK13548 81 LPQHSSL------SFP-FTVEEVVAMG-----RAPHGLSRAED----DALVAAALAQVDlahlagrdypQLSGGEQQRVQ 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 148 IGRALM------SQPRLLLLDEP--SLGLApiiiQQ--IFDTIEQL-RKEGMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:PRK13548 145 LARVLAqlwepdGPPRWLLLDEPtsALDLA----HQhhVLRLARQLaHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV 220
|
250
....*....|....*...
gi 754513351 217 LEDTGEALLANEAVRSAY 234
Cdd:PRK13548 221 ADGTPAEVLTPETLRRVY 238
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
10-218 |
2.53e-35 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 124.79 E-value: 2.53e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 10 RVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITdwQTAKIMREAVAIVPEGR 89
Cdd:cd03266 10 RFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV--KEPAEARRRLGFVSDST 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 90 RVFSRMTVEENLamgGFFAD-----RSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP 164
Cdd:cd03266 88 GLYDRLTARENL---EYFAGlyglkGDELTARLEELADRL-GMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEP 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 754513351 165 SLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218
Cdd:cd03266 164 TTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
5-205 |
2.82e-35 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 124.67 E-value: 2.82e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHY-GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKI--MREA 81
Cdd:TIGR02673 1 MIEFHNVSKAYpGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLplLRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 82 VAIVPEGRRVFSRMTVEENLAM-----GgffADRSQYQERIQRVYDLFPrLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156
Cdd:TIGR02673 81 IGVVFQDFRLLPDRTVYENVALplevrG---KKEREIQRRVGAALRQVG-LEHKADAFPEQLSGGEQQRVAIARAIVNSP 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIF-------LVEQNANQALKLAD 205
Cdd:TIGR02673 157 PLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIvathdlsLVDRVAHRVIILDD 212
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
6-229 |
4.15e-35 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 131.04 E-value: 4.15e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHY--GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKImREAVA 83
Cdd:COG4987 334 LELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDL-RRRIA 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 IVPEGRRVFSrMTVEENLAMGGFFADRSQYQERIQRVY--DLFPRLHER---RIQRAG-TMSGGEQQMLAIGRALMSQPR 157
Cdd:COG4987 413 VVPQRPHLFD-TTLRENLRLARPDATDEELWAALERVGlgDWLAALPDGldtWLGEGGrRLSGGERRRLALARALLRDAP 491
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754513351 158 LLLLDEPSLGLAPIIIQQIFDTIEQLRKeGMTIFLVEQNAnQALKLADRGYVLENGHVVLEDTGEALLANEA 229
Cdd:COG4987 492 ILLLDEPTEGLDAATEQALLADLLEALA-GRTVLLITHRL-AGLERMDRILVLEDGRIVEQGTHEELLAQNG 561
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-228 |
5.03e-35 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 130.65 E-value: 5.03e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 2 ENVMLSFDRVSAHY-GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKImRE 80
Cdd:COG4988 333 GPPSIELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASW-RR 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVAIVPEGRRVFSrMTVEENLAMGGFFADRSQYQERIQRVY--DLFPRLH---ERRI-QRAGTMSGGEQQMLAIGRALMS 154
Cdd:COG4988 412 QIAWVPQNPYLFA-GTIRENLRLGRPDASDEELEAALEAAGldEFVAALPdglDTPLgEGGRGLSGGQAQRLALARALLR 490
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 754513351 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANqaLKLADRGYVLENGHVVLEDTGEALLANE 228
Cdd:COG4988 491 DAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILITHRLAL--LAQADRILVLDDGRIVEQGTHEELLAKN 562
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
5-206 |
6.30e-35 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 123.36 E-value: 6.30e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAkiMREAVAI 84
Cdd:COG4133 2 MLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDARED--YRRRLAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRMTVEENL----AMGGFFADRSQYQERIQRVyDLFPRLHerriQRAGTMSGGEQQMLAIGRALMSQPRLLL 160
Cdd:COG4133 80 LGHADGLKPELTVRENLrfwaALYGLRADREAIDEALEAV-GLAGLAD----LPVRQLSAGQKRRVALARLLLSPAPLWL 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 754513351 161 LDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFL-----VEQNANQALKLADR 206
Cdd:COG4133 155 LDEPFTALDAAGVALLAELIAAHLARGGAVLLtthqpLELAAARVLDLGDF 205
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
5-236 |
9.30e-35 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 123.71 E-value: 9.30e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKiQALHeVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwqtakimreavaI 84
Cdd:COG3840 1 MLRLDDLTYRYGD-FPLR-FDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTA------------L 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRV---------FSRMTVEENLAMGgfF--------ADRSQYQERIQRV--YDLFPRLherriqrAGTMSGGEQQM 145
Cdd:COG3840 67 PPAERPVsmlfqennlFPHLTVAQNIGLG--LrpglkltaEQRAQVEQALERVglAGLLDRL-------PGQLSGGQRQR 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEAL 224
Cdd:COG3840 138 VALARCLVRKRPILLLDEPFSALDPALRQEMLDLVDELCRErGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAAL 217
|
250
....*....|....
gi 754513351 225 LANE--AVRSAYLG 236
Cdd:COG3840 218 LDGEppPALAAYLG 231
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
6-218 |
5.65e-34 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 121.42 E-value: 5.65e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYG----KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwqtakiMREA 81
Cdd:cd03293 1 LEVRNVSKTYGggggAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG------PGPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 82 VAIVPEGRRVFSRMTVEENLAMG--GFFADRSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159
Cdd:cd03293 75 RGYVFQQDALLPWLTVLDNVALGleLQGVPKAEARERAEELLELV-GLSGFENAYPHQLSGGMRQRVALARALAVDPDVL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754513351 160 LLDEPSLGLAPIIIQQIFDTIEQL-RKEGMTIFLVEQNANQALKLADRGYVLEN--GHVVLE 218
Cdd:cd03293 154 LLDEPFSALDALTREQLQEELLDIwRETGKTVLLVTHDIDEAVFLADRVVVLSArpGRIVAE 215
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
21-216 |
7.17e-34 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 121.67 E-value: 7.17e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKimrEAVAIVPEGRRVFSRMTVEEN 100
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK---RDISYVPQNYALFPHMTVYKN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 101 LAmggfFADRSQYQERIQ---RVYDLFPRLHERRI--QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQ 175
Cdd:cd03299 92 IA----YGLKKRKVDKKEierKVLEIAEMLGIDHLlnRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEK 167
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 754513351 176 IFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:cd03299 168 LREELKKIRKEfGVTVLHVTHDFEEAWALADKVAIMLNGKLI 209
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
5-227 |
1.13e-33 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 121.15 E-value: 1.13e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVS----AHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKiMRE 80
Cdd:cd03258 1 MIELKNVSkvfgDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKE-LRK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 A---VAIVPEGRRVFSRMTVEENLAMGGFFADRSQyQERIQRVYDL--FPRLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155
Cdd:cd03258 80 ArrrIGMIFQHFNLLSSRTVFENVALPLEIAGVPK-AEIEERVLELleLVGLEDKADAYPAQLSGGQKQRVGIARALANN 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754513351 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLAN 227
Cdd:cd03258 159 PKVLLCDEATSALDPETTQSILALLRDINRElGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
4-215 |
3.28e-33 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 118.30 E-value: 3.28e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 4 VMLSFDRVSAHYgkiqALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVA 83
Cdd:cd03215 3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 IVPEGRR---VFSRMTVEENLAMGGFFadrsqyqeriqrvydlfprlherriqragtmSGGEQQMLAIGRALMSQPRLLL 160
Cdd:cd03215 79 YVPEDRKregLVLDLSVAENIALSSLL-------------------------------SGGNQQKVVLARWLARDPRVLI 127
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 754513351 161 LDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHV 215
Cdd:cd03215 128 LDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
6-217 |
3.41e-33 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 119.31 E-value: 3.41e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwqtakIMREAVAIV 85
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-----AARNRIGYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 PEGRRVFSRMTVEENLAmggFFADRSQY--QERIQRVYDLFPRLH--ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLL 161
Cdd:cd03269 76 PEERGLYPKMKVIDQLV---YLAQLKGLkkEEARRRIDEWLERLElsEYANKRVEELSKGNQQKVQFIAAVIHDPELLIL 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 162 DEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVL 217
Cdd:cd03269 153 DEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
6-232 |
1.00e-32 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 118.94 E-value: 1.00e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQ-ALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKiMREAVAI 84
Cdd:cd03295 1 IEFENVTKRYGGGKkAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVE-LRRKIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRMTVEENLAMGGFFADRSQyQERIQRVYDLFPRLH----ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160
Cdd:cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPK-EKIRERADELLALVGldpaEFADRYPHELSGGQQQRVGVARALAADPPLLL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 161 LDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALL---ANEAVRS 232
Cdd:cd03295 159 MDEPFGALDPITRDQLQEEFKRLQQElGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILrspANDFVAE 234
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
5-216 |
1.63e-32 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 120.95 E-value: 1.63e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKimREaVAI 84
Cdd:COG3839 3 SLELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKD--RN-IAM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRMTVEENLAMG----GFfaDRSQYQERIQRVYDLF---PRLHerriQRAGTMSGGEQQMLAIGRALMSQPR 157
Cdd:COG3839 80 VFQSYALYPHMTVYENIAFPlklrKV--PKAEIDRRVREAAELLgleDLLD----RKPKQLSGGQRQRVALGRALVREPK 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 158 LLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:COG3839 154 VFLLDEPLSNLDAKLRVEMRAEIKRLHRRlGTTTIYVTHDQVEAMTLADRIAVMNDGRIQ 213
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
6-213 |
2.55e-32 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 117.22 E-value: 2.55e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQ--ALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwQTAKIMREaVA 83
Cdd:cd03263 1 LQIRNLTKTYKKGTkpAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT-DRKAARQS-LG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 IVPEGRRVFSRMTVEENLAmggFFA--------DRSQYQERIQRVYDLFPRLHerriQRAGTMSGGEQQMLAIGRALMSQ 155
Cdd:cd03263 79 YCPQFDALFDELTVREHLR---FYArlkglpksEIKEEVELLLRVLGLTDKAN----KRARTLSGGMKRKLSLAIALIGG 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 754513351 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLRKeGMTIFLVEQNANQALKLADRGYVLENG 213
Cdd:cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDG 208
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
6-227 |
3.30e-32 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 122.97 E-value: 3.30e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHY-GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG--DPRAstGKIVFDGKDITDWQTAKImREAV 82
Cdd:COG1132 340 IEFENVSFSYpGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRfyDPTS--GRILIDGVDIRDLTLESL-RRQI 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 AIVPEGRRVFSRmTVEENLAMGGFFADRSQYQE--RIQRVYDLFPRLHER---RI-QRAGTMSGGEQQMLAIGRALMSQP 156
Cdd:COG1132 417 GVVPQDTFLFSG-TIRENIRYGRPDATDEEVEEaaKAAQAHEFIEALPDGydtVVgERGVNLSGGQRQRIAIARALLKDP 495
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLRKeGMTIFLVeqnanqA-----LKLADRGYVLENGHVVLEDTGEALLAN 227
Cdd:COG1132 496 PILILDEATSALDTETEALIQEALERLMK-GRTTIVI------AhrlstIRNADRILVLDDGRIVEQGTHEELLAR 564
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-218 |
6.90e-32 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 117.11 E-value: 6.90e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHY----GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwqtak 76
Cdd:COG1116 3 AAAPALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTG----- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 77 iMREAVAIVPEGRRVFSRMTVEENLAMG----GffADRSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRAL 152
Cdd:COG1116 78 -PGPDRGVVFQEPALLPWLTVLDNVALGlelrG--VPKAERRERARELLELV-GLAGFEDAYPHQLSGGMRQRVAIARAL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 754513351 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL-RKEGMTIFLVEQNANQALKLADRGYVLEN--GHVVLE 218
Cdd:COG1116 154 ANDPEVLLMDEPFGALDALTRERLQDELLRLwQETGKTVLFVTHDVDEAVFLADRVVVLSArpGRIVEE 222
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-227 |
2.00e-31 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 120.13 E-value: 2.00e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMRE 80
Cdd:COG3845 1 MMPPALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRSPRDAIAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVAIVPEGRRVFSRMTVEENLAMG-----GFFADRSQYQERIQRVYDLFPrLH---ERRIqraGTMSGGEQQMLAIGRAL 152
Cdd:COG3845 81 GIGMVHQHFMLVPNLTVAENIVLGleptkGGRLDRKAARARIRELSERYG-LDvdpDAKV---EDLSVGEQQRVEILKAL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 754513351 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVV----LEDTGEALLAN 227
Cdd:COG3845 157 YRGARILILDEPTAVLTPQEADELFEILRRLAAEGKSIIFITHKLREVMAIADRVTVLRRGKVVgtvdTAETSEEELAE 235
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
6-216 |
2.63e-31 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 114.27 E-value: 2.63e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKimREaVAIV 85
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD--RD-IAMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 PEGRRVFSRMTVEENLAMG----GFfaDRSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLL 161
Cdd:cd03301 78 FQNYALYPHMTVYDNIAFGlklrKV--PKDEIDERVREVAELL-QIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLM 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 162 DEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:cd03301 155 DEPLSNLDAKLRVQMRAELKRLQQRlGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
11-215 |
3.45e-31 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 114.74 E-value: 3.45e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 11 VSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwqtAKIMREAVAIVPEGRR 90
Cdd:cd03296 8 VSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATD---VPVQERNVGFVFQHYA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 91 VFSRMTVEENLAMGGFFADRSQY---QERIQRVYDLFPRLHERRIQR--AGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
Cdd:cd03296 85 LFRHMTVFDNVAFGLRVKPRSERppeAEIRAKVHELLKLVQLDWLADryPAQLSGGQRQRVALARALAVEPKVLLLDEPF 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 754513351 166 LGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHV 215
Cdd:cd03296 165 GALDAKVRKELRRWLRRLHDElHVTTVFVTHDQEEALEVADRVVVMNKGRI 215
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
15-216 |
4.78e-31 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 114.34 E-value: 4.78e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 15 YGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKI-----VFDGKDITDWQTAKIMREAVAIVPEGR 89
Cdd:PRK11124 12 YGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLniagnHFDFSKTPSDKAIRELRRNVGMVFQQY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 90 RVFSRMTVEENL---AMGGFFADRSQYQERIQRVY---------DLFPrLHerriqragtMSGGEQQMLAIGRALMSQPR 157
Cdd:PRK11124 92 NLWPHLTVQQNLieaPCRVLGLSKDQALARAEKLLerlrlkpyaDRFP-LH---------LSGGQQQRVAIARALMMEPQ 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 754513351 158 LLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:PRK11124 162 VLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
6-216 |
7.71e-31 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 112.74 E-value: 7.71e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDrvsaHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQtakiMREAVAIV 85
Cdd:cd03226 5 ISFS----YKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKE----RRKSIGYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 P-EGRRVFSRMTVEENLAMGGFFADRSQYQ-ERIQRVYDLFpRLHERRIQragTMSGGEQQMLAIGRALMSQPRLLLLDE 163
Cdd:cd03226 77 MqDVDYQLFTDSVREELLLGLKELDAGNEQaETVLKDLDLY-ALKERHPL---SLSGGQKQRLAIAAALLSGKDLLIFDE 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 754513351 164 PSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:cd03226 153 PTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
6-227 |
1.17e-30 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 116.01 E-value: 1.17e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDitdWQTAKIMREavaiv 85
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRD---LFTNLPPRE----- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 pegRRV---------FSRMTVEENLAMG--GFFADRSQYQERIQRVYDLF--PRLHERRiqrAGTMSGGEQQMLAIGRAL 152
Cdd:COG1118 75 ---RRVgfvfqhyalFPHMTVAENIAFGlrVRPPSKAEIRARVEELLELVqlEGLADRY---PSQLSGGQRQRVALARAL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 153 MSQPRLLLLDEPslglapiiiqqiF---DTieQLRKE-------------GMTIFlVEQNANQALKLADRGYVLENGHVV 216
Cdd:COG1118 149 AVEPEVLLLDEP------------FgalDA--KVRKElrrwlrrlhdelgGTTVF-VTHDQEEALELADRVVVMNQGRIE 213
|
250
....*....|.
gi 754513351 217 LEDTGEALLAN 227
Cdd:COG1118 214 QVGTPDEVYDR 224
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
6-170 |
3.56e-30 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 111.13 E-value: 3.56e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGeIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAkiMREAVAIV 85
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK--LRRRIGYL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 PEGRRVFSRMTVEENLAmggFFA-----DRSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160
Cdd:cd03264 78 PQEFGVYPNFTVREFLD---YIAwlkgiPSKEVKARVDEVLELV-NLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILI 153
|
170
....*....|
gi 754513351 161 LDEPSLGLAP 170
Cdd:cd03264 154 VDEPTAGLDP 163
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-223 |
4.48e-30 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 116.28 E-value: 4.48e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 4 VMLSFDRVSAH-YGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAV 82
Cdd:COG3845 256 VVLEVENLSVRdDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLGV 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 AIVPEGRR---VFSRMTVEENLAMG---------GFFADRSQYQERIQRV---YDLFPRLHErriQRAGTMSGGEQQMLA 147
Cdd:COG3845 336 AYIPEDRLgrgLVPDMSVAENLILGryrrppfsrGGFLDRKAIRAFAEELieeFDVRTPGPD---TPARSLSGGNQQKVI 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 148 IGRALMSQPRLLLLDEPSLGL---ApiiIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLE-DTGEA 223
Cdd:COG3845 413 LARELSRDPKLLIAAQPTRGLdvgA---IEFIHQRLLELRDAGAAVLLISEDLDEILALSDRIAVMYEGRIVGEvPAAEA 489
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
23-226 |
5.87e-30 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 114.05 E-value: 5.87e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 23 EVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGkdiTDWQTAK------IMREAVAIVPEGRRVFSRMT 96
Cdd:TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNG---RTLFDSRkgiflpPEKRRIGYVFQEARLFPHLS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 97 VEENLAMGGFFADRSQYQERIQRVYDLFPRLHERRiQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQI 176
Cdd:TIGR02142 92 VRGNLRYGMKRARPSERRISFERVIELLGIGHLLG-RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEI 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 754513351 177 FDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLA 226
Cdd:TIGR02142 171 LPYLERLHAEfGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
6-216 |
1.19e-29 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 109.89 E-value: 1.19e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKiQALHeVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITdwqTAKIMREAVAIV 85
Cdd:cd03298 1 VRLDKIRFSYGE-QPMH-FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVT---AAPPADRPVSML 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 PEGRRVFSRMTVEENLAMGGFFADRSQYQERiQRVYDLFPR--LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
Cdd:cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDR-QAIEVALARvgLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDE 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 754513351 164 PSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:cd03298 155 PFAALDPALRAEMLDLVLDLHAEtKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
15-216 |
1.20e-29 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 110.87 E-value: 1.20e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 15 YGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGT--LCGDPRASTGKIV---FDGKDITDWQTAKIMREAVAIVPEGR 89
Cdd:COG4161 12 YGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVlnLLETPDSGQLNIAghqFDFSQKPSEKAIRLLRQKVGMVFQQY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 90 RVFSRMTVEENL------------AMGGFFADRSQYQERIQRVYDLFPrLHerriqragtMSGGEQQMLAIGRALMSQPR 157
Cdd:COG4161 92 NLWPHLTVMENLieapckvlglskEQAREKAMKLLARLRLTDKADRFP-LH---------LSGGQQQRVAIARALMMEPQ 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 754513351 158 LLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:COG4161 162 VLLFDEPTAALDPEITAQVVEIIRELSQTGITQVIVTHEVEFARKVASQVVYMEKGRII 220
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
23-233 |
3.93e-29 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 112.12 E-value: 3.93e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 23 EVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGkdiTDWQTAkimREAVAIVPEGRRV---------FS 93
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGG---EVLQDS---ARGIFLPPHRRRIgyvfqearlFP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 94 RMTVEENLAMGGFFADRSQYQERIQRVYDLF---PRLhERRIQragTMSGGEQQMLAIGRALMSQPRLLLLDEP--SLGL 168
Cdd:COG4148 91 HLSVRGNLLYGRKRAPRAERRISFDEVVELLgigHLL-DRRPA---TLSGGERQRVAIGRALLSSPRLLLMDEPlaALDL 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 169 ApiIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVRSA 233
Cdd:COG4148 167 A--RKAEILPYLERLRDElDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRPDLLPL 230
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-223 |
4.29e-29 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 109.06 E-value: 4.29e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHY----GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDW---Q 73
Cdd:COG4181 4 SSAPIIELRGLTKTVgtgaGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALdedA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 74 TAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFADRSQYQER----IQRVyDLFPRLHerriQRAGTMSGGEQQMLAIG 149
Cdd:COG4181 84 RARLRARHVGFVFQSFQLLPTLTALENVMLPLELAGRRDARARaralLERV-GLGHRLD----HYPAQLSGGEQQRVALA 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 754513351 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKlADRGYVLENGHVVLEDTGEA 223
Cdd:COG4181 159 RAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRErGTTLVLVTHDPALAAR-CDRVLRLRAGRLVEDTAATA 232
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
3-234 |
5.43e-29 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 109.40 E-value: 5.43e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 3 NVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGD-PRASTGKIVFDGKDITDWQTAKImREA 81
Cdd:COG1119 1 DPLLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDlPPTYGNDVRLFGERRGGEDVWEL-RKR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 82 VAIV-PE-GRRVFSRMTVEEnLAMGGFFA--DRSQY--QERIQRVYDLFPRLH-ERRIQRA-GTMSGGEQQMLAIGRALM 153
Cdd:COG1119 80 IGLVsPAlQLRFPRDETVLD-VVLSGFFDsiGLYREptDEQRERARELLELLGlAHLADRPfGTLSQGEQRRVLIARALV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEG-MTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVRS 232
Cdd:COG1119 159 KDPELLILDEPTAGLDLGARELLLALLDKLAAEGaPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPKEEVLTSENLSE 238
|
..
gi 754513351 233 AY 234
Cdd:COG1119 239 AF 240
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
5-216 |
9.51e-29 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 110.55 E-value: 9.51e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHY----GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwQTAKIMRE 80
Cdd:COG1135 1 MIELENLSKTFptkgGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTA-LSERELRA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AvaivpegRR----VF------SRMTVEENLAM-----GgffADRSqyqERIQRVYDLFPR--LHERRIQRAGTMSGGEQ 143
Cdd:COG1135 80 A-------RRkigmIFqhfnllSSRTVAENVALpleiaG---VPKA---EIRKRVAELLELvgLSDKADAYPSQLSGGQK 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 754513351 144 QMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:COG1135 147 QRVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRElGLTIVLITHEMDVVRRICDRVAVLENGRIV 220
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
6-230 |
9.73e-29 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 108.09 E-value: 9.73e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGK--IQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLcgdPR---ASTGKIVFDGKDITDWqTAKIMRE 80
Cdd:cd03251 1 VEFKNVTFRYPGdgPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLI---PRfydVDSGRILIDGHDVRDY-TLASLRR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVAIVPEGRRVFSRmTVEENLAMGGFFADRSQYQERIQRVY-----DLFPRLHERRI-QRAGTMSGGEQQMLAIGRALMS 154
Cdd:cd03251 77 QIGLVSQDVFLFND-TVAENIAYGRPGATREEVEEAARAANahefiMELPEGYDTVIgERGVKLSGGQRQRIAIARALLK 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKeGMTIFLVEQNANqALKLADRGYVLENGHVVLEDTGEALLANEAV 230
Cdd:cd03251 156 DPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIENADRIVVLEDGKIVERGTHEELLAQGGV 229
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
8-216 |
1.00e-28 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 107.68 E-value: 1.00e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 8 FDRVSAHY--GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREaVAIV 85
Cdd:cd03245 5 FRNVSFSYpnQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN-IGYV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 PEGRRVFSRmTVEENLAMGGFFADrsqyQERIQRVYDL-----FPRLH----ERRIQRAG-TMSGGEQQMLAIGRALMSQ 155
Cdd:cd03245 84 PQDVTLFYG-TLRDNITLGAPLAD----DERILRAAELagvtdFVNKHpnglDLQIGERGrGLSGGQRQAVALARALLND 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 754513351 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLRkEGMTIFLVEQNaNQALKLADRGYVLENGHVV 216
Cdd:cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHR-PSLLDLVDRIIVMDSGRIV 217
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
20-224 |
1.11e-28 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 112.42 E-value: 1.11e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 20 ALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVAIVPEGRR---VFSRMT 96
Cdd:COG1129 267 VVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRSPRDAIRAGIAYVPEDRKgegLVLDLS 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 97 VEENLAMG-------GFFADRSQYQERIQRVYDLF----PRLHerriQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
Cdd:COG1129 347 IRENITLAsldrlsrGGLLDRRRERALAEEYIKRLriktPSPE----QPVGNLSGGNQQKVVLAKWLATDPKVLILDEPT 422
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 754513351 166 LGlapiiI-----QQIFDTIEQLRKEGMTIFLV-----EqnanqALKLADRGYVLENGHVVLEDTGEAL 224
Cdd:COG1129 423 RG-----IdvgakAEIYRLIRELAAEGKAVIVIsselpE-----LLGLSDRILVMREGRIVGELDREEA 481
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-228 |
1.31e-28 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 109.51 E-value: 1.31e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITdwQTAKIMRE 80
Cdd:PRK13537 3 MSVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVP--SRARHARQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVAIVPEGRRVFSRMTVEENLAMGG--FFADRSQYQERIQRVYDlFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL 158
Cdd:PRK13537 81 RVGVVPQFDNLDPDFTVRENLLVFGryFGLSAAAARALVPPLLE-FAKLENKADAKVGELSGGMKRRLTLARALVNDPDV 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 159 LLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANE 228
Cdd:PRK13537 160 LVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESE 229
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
31-216 |
3.83e-28 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 106.23 E-value: 3.83e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 31 GEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGkdiTDWQTAkimREAVAIVPEGRRV---------FSRMTVEENL 101
Cdd:cd03297 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNG---TVLFDS---RKKINLPPQQRKIglvfqqyalFPHLNVRENL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 102 AMGGFFADRSQYQERIQRVYDLF--PRLHERRIQragTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDT 179
Cdd:cd03297 97 AFGLKRKRNREDRISVDELLDLLglDHLLNRYPA---QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173
|
170 180 190
....*....|....*....|....*....|....*...
gi 754513351 180 IEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:cd03297 174 LKQIKKNlNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-225 |
4.12e-28 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 109.15 E-value: 4.12e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwqTAKIMRE 80
Cdd:PRK13536 37 MSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPA--RARLARA 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVAIVPEGRRVFSRMTVEENLAM-GGFFADRSQYQERIQRVYDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159
Cdd:PRK13536 115 RIGVVPQFDNLDLEFTVRENLLVfGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLL 194
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 160 LLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALL 225
Cdd:PRK13536 195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
8-215 |
1.68e-27 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 104.41 E-value: 1.68e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 8 FDRVSAHY-GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKI--MREAVAI 84
Cdd:cd03292 3 FINVTKTYpNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIpyLRRKIGV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRMTVEEN--LAMGGFFADRSQYQERIQRVYDLFPRLHERRIQRAGtMSGGEQQMLAIGRALMSQPRLLLLD 162
Cdd:cd03292 83 VFQDFRLLPDRNVYENvaFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAE-LSGGEQQRVAIARAIVNSPTILIAD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 754513351 163 EPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHV 215
Cdd:cd03292 162 EPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
21-228 |
1.90e-27 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 103.76 E-value: 1.90e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDP--RASTGKIVFDGKDITDwqtakimreavaivpegrrvfsrMTVE 98
Cdd:cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPkyEVTEGEILFKGEDITD-----------------------LPPE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 99 ENLAMGGFFAdrSQYQERIQ--RVYDLFPRLHErriqragTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQI 176
Cdd:cd03217 73 ERARLGIFLA--FQYPPEIPgvKNADFLRYVNE-------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLV 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 754513351 177 FDTIEQLRKEGMTIFLVEQNANQALKL-ADRGYVLENGHVVLEdtGEALLANE 228
Cdd:cd03217 144 AEVINKLREEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKS--GDKELALE 194
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
2-226 |
1.99e-27 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 104.61 E-value: 1.99e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 2 ENVMLSFDrvsahyGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWqTAKIMREA 81
Cdd:cd03254 6 ENVNFSYD------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDI-SRKSLRSM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 82 VAIVPEGRRVFSRmTVEENLAMGGFFADRSQYQERIQRV-YDLFPR-----LHERRIQRAGTMSGGEQQMLAIGRALMSQ 155
Cdd:cd03254 79 IGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAgAHDFIMklpngYDTVLGENGGNLSQGERQLLAIARAMLRD 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 754513351 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLRKeGMTIFLVEQNANqALKLADRGYVLENGHVVLEDTGEALLA 226
Cdd:cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMK-GRTSIIIAHRLS-TIKNADKILVLDDGKIIEEGTHDELLA 226
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
5-236 |
2.31e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 105.84 E-value: 2.31e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGK-IQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVA 83
Cdd:PRK13644 1 MIRLENVSYSYPDgTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 IV---PEGRrvFSRMTVEENLAMG--GFFADRSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL 158
Cdd:PRK13644 81 IVfqnPETQ--FVGRTVEEDLAFGpeNLCLPPIEIRKRVDRALAEI-GLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 754513351 159 LLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQaLKLADRGYVLENGHVVLEDTGEALLANEAVRsaYLG 236
Cdd:PRK13644 158 LIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-LHDADRIIVMDRGKIVLEGEPENVLSDVSLQ--TLG 232
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-225 |
2.34e-27 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 105.24 E-value: 2.34e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTL--CGD--PRAS-TGKIVFDGKDITDWQTA 75
Cdd:PRK14239 1 MTEPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrMNDlnPEVTiTGSIVYNGHNIYSPRTD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 76 KI-MREAVAIVPEGRRVFSrMTVEENLAMGGFFA---DRSQYQERIQR------VYD-LFPRLHERRIqragTMSGGEQQ 144
Cdd:PRK14239 81 TVdLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKgikDKQVLDEAVEKslkgasIWDeVKDRLHDSAL----GLSGGQQQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEgMTIFLVEQNANQALKLADR-GYVLENGHVVLEDTGEA 223
Cdd:PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDD-YTMLLVTRSMQQASRISDRtGFFLDGDLIEYNDTKQM 234
|
..
gi 754513351 224 LL 225
Cdd:PRK14239 235 FM 236
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
11-215 |
2.51e-27 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 107.34 E-value: 2.51e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 11 VSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwqtakimreavaIVPEGRR 90
Cdd:PRK09452 20 ISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITH------------VPAENRH 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 91 V---------FSRMTVEENLAmggfFADRSQ---YQERIQRVYDLFPRLH-----ERRIQRagtMSGGEQQMLAIGRALM 153
Cdd:PRK09452 88 VntvfqsyalFPHMTVFENVA----FGLRMQktpAAEITPRVMEALRMVQleefaQRKPHQ---LSGGQQQRVAIARAVV 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754513351 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQL-RKEGMTIFLVEQNANQALKLADRGYVLENGHV 215
Cdd:PRK09452 161 NKPKVLLLDESLSALDYKLRKQMQNELKALqRKLGITFVFVTHDQEEALTMSDRIVVMRDGRI 223
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
6-218 |
6.87e-27 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 102.01 E-value: 6.87e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYG--KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQtaKIMREAVA 83
Cdd:cd03247 1 LSINNVSFSYPeqEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE--KALSSLIS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 IVPEGRRVFSrMTVEENLAmggffadrsqyqeriqrvydlfprlheRRiqragtMSGGEQQMLAIGRALMSQPRLLLLDE 163
Cdd:cd03247 79 VLNQRPYLFD-TTLRNNLG---------------------------RR------FSGGERQRLALARILLQDAPIVLLDE 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 164 PSLGLAPIIIQQIFDTI-EQLrkEGMTIFLVEQNAnQALKLADRGYVLENGHVVLE 218
Cdd:cd03247 125 PTVGLDPITERQLLSLIfEVL--KDKTLIWITHHL-TGIEHMDKILFLENGKIIMQ 177
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
6-193 |
7.40e-27 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 107.76 E-value: 7.40e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHY-GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWqTAKIMREAVAI 84
Cdd:TIGR02857 322 LEFSGVSVAYpGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADA-DADSWRDQIAW 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRmTVEENLAMGGFFADRSQYQERIQRVY-----DLFPRLHERRIQRAGTM-SGGEQQMLAIGRALMSQPRL 158
Cdd:TIGR02857 401 VPQHPFLFAG-TIAENIRLARPDASDAEIREALERAGldefvAALPQGLDTPIGEGGAGlSGGQAQRLALARAFLRDAPL 479
|
170 180 190
....*....|....*....|....*....|....*
gi 754513351 159 LLLDEPSLGLAPIIIQQIFDTIEQLRkEGMTIFLV 193
Cdd:TIGR02857 480 LLLDEPTAHLDAETEAEVLEALRALA-QGRTVLLV 513
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
5-222 |
1.02e-26 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 102.65 E-value: 1.02e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVS-AHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKI--MREA 81
Cdd:PRK10908 1 MIRFEHVSkAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVpfLRRQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 82 VAIVPEGRRVFSRMTVEENLAMGGFFADRS--QYQERIQRVYDLFPRLHERR---IQragtMSGGEQQMLAIGRALMSQP 156
Cdd:PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASgdDIRRRVSAALDKVGLLDKAKnfpIQ----LSGGEQQRVGIARAVVNKP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGE 222
Cdd:PRK10908 157 AVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGGVGGE 222
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
20-232 |
1.93e-26 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 103.11 E-value: 1.93e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 20 ALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDIT---DWQTAKIMREAVAIVPEGRRVFSRMT 96
Cdd:cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAamsRKELRELRRKKISMVFQSFALLPHRT 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 97 VEENLAMGGFFADRSQyQERIQRVYDLFPR--LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQ 174
Cdd:cd03294 119 VLENVAFGLEVQGVPR-AEREERAAEALELvgLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRR 197
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754513351 175 QIFDTIEQL-RKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALL---ANEAVRS 232
Cdd:cd03294 198 EMQDELLRLqAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILtnpANDYVRE 259
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
5-236 |
3.17e-26 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 101.58 E-value: 3.17e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYgkiQALH-EVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITdwqTAKIMREAVA 83
Cdd:PRK10771 1 MLKLTDITWLY---HHLPmRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHT---TTPPSRRPVS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 IVPEGRRVFSRMTVEENLAMG---GF---FADRSQYQERIQRVY--DLFPRLherriqrAGTMSGGEQQMLAIGRALMSQ 155
Cdd:PRK10771 75 MLFQENNLFSHLTVAQNIGLGlnpGLklnAAQREKLHAIARQMGieDLLARL-------PGQLSGGQRQRVALARCLVRE 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQL-RKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVRSAY 234
Cdd:PRK10771 148 QPILLLDEPFSALDPALRQEMLTLVSQVcQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKASASAL 227
|
..
gi 754513351 235 LG 236
Cdd:PRK10771 228 LG 229
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
6-216 |
4.64e-26 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 105.38 E-value: 4.64e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVAI- 84
Cdd:PRK11288 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIi 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 ------VPEgrrvfsrMTVEENLAMGGF-----FADRSQYQERIQRVY-----DLFPRlherriQRAGTMSGGEQQMLAI 148
Cdd:PRK11288 85 yqelhlVPE-------MTVAENLYLGQLphkggIVNRRLLNYEAREQLehlgvDIDPD------TPLKYLSIGQRQMVEI 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 754513351 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:PRK11288 152 AKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYV 219
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
20-220 |
1.82e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 100.89 E-value: 1.82e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 20 ALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwQTAKI--MREAVAIV---PEgRRVFSR 94
Cdd:PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITD-KKVKLsdIRKKVGLVfqyPE-YQLFEE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 95 mTVEENLAMG--GFFADRSQYQERIQRVYDLFPRLHERRIQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPI 171
Cdd:PRK13637 100 -TIEKDIAFGpiNLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPfELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 754513351 172 IIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDT 220
Cdd:PRK13637 179 GRDEILNKIKELHKEyNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2-205 |
2.21e-25 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 100.24 E-value: 2.21e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 2 ENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLL------GTLCGDPRAStGKIVFDGKDITDWQTA 75
Cdd:PRK14243 7 TETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILrcfnrlNDLIPGFRVE-GKVTFHGKNLYAPDVD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 76 KI-MREAVAIVPEGRRVFSRmTVEENLAMG----GFFADRSQYQERIQRVYDLFPRLHERRIQRAGTMSGGEQQMLAIGR 150
Cdd:PRK14243 86 PVeVRRRIGMVFQKPNPFPK-SIYDNIAYGarinGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIAR 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 754513351 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLrKEGMTIFLVEQNANQALKLAD 205
Cdd:PRK14243 165 AIAVQPEVILMDEPCSALDPISTLRIEELMHEL-KEQYTIIIVTHNMQQAARVSD 218
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-216 |
2.73e-25 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 103.33 E-value: 2.73e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDItDWQTAKIMRE 80
Cdd:PRK09700 1 MATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINY-NKLDHKLAAQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 -AVAIVPEGRRVFSRMTVEENLAMGGFFADRS------QYQERIQRVYDLFPRLHERRI--QRAGTMSGGEQQMLAIGRA 151
Cdd:PRK09700 80 lGIGIIYQELSVIDELTVLENLYIGRHLTKKVcgvniiDWREMRVRAAMMLLRVGLKVDldEKVANLSISHKQMLEIAKT 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 754513351 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:PRK09700 160 LMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
11-206 |
8.10e-25 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 97.30 E-value: 8.10e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 11 VSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKD---ITDWQTAKIMREAVAIVPE 87
Cdd:TIGR03608 4 ISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQEtppLNSKKASKFRREKLGYLFQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 88 GRRVFSRMTVEENLAMGGFFADRSQYQERIQRVYDL-FPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSL 166
Cdd:TIGR03608 84 NFALIENETVEENLDLGLKYKKLSKKEKREKKKEALeKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTG 163
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 754513351 167 GLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQAlKLADR 206
Cdd:TIGR03608 164 SLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADR 202
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
19-235 |
8.48e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 99.00 E-value: 8.48e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 19 QALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDIT-DWQTAKIMREAVAIV---PEGRrVFSR 94
Cdd:PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKyDKKSLLEVRKTVGIVfqnPDDQ-LFAP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 95 mTVEENLAMG----GFFADRSQ--YQERIQRV----YDLFPRLHerriqragtMSGGEQQMLAIGRALMSQPRLLLLDEP 164
Cdd:PRK13639 95 -TVEEDVAFGplnlGLSKEEVEkrVKEALKAVgmegFENKPPHH---------LSGGQKKRVAIAGILAMKPEIIVLDEP 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754513351 165 SLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLAN-EAVRSAYL 235
Cdd:PRK13639 165 TSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDiETIRKANL 236
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-235 |
1.33e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 98.38 E-value: 1.33e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGK-IQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDItDWQTAKIM- 78
Cdd:PRK13636 1 MEDYILKVEELNYNYSDgTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI-DYSRKGLMk 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 79 -REAVAIV---PEgRRVFSrMTVEENLAMG--GFFADRSQYQERIQRVYDLFPRLHERRiQRAGTMSGGEQQMLAIGRAL 152
Cdd:PRK13636 80 lRESVGMVfqdPD-NQLFS-ASVYQDVSFGavNLKLPEDEVRKRVDNALKRTGIEHLKD-KPTHCLSFGQKKRVAIAGVL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLAN-EAV 230
Cdd:PRK13636 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKElGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEkEML 236
|
....*
gi 754513351 231 RSAYL 235
Cdd:PRK13636 237 RKVNL 241
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
21-226 |
1.39e-24 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 101.23 E-value: 1.39e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVAIVPEGRR---VFSRMTV 97
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKrdgLVLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 98 EENL---AMGGF--FADRSQYQERIQRVYD---LFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLA 169
Cdd:PRK10762 348 KENMsltALRYFsrAGGSLKHADEQQAVSDfirLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754513351 170 PIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLE-----DTGEALLA 226
Cdd:PRK10762 428 VGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEftreqATQEKLMA 489
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
3-216 |
1.78e-24 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 99.91 E-value: 1.78e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 3 NVMLSFDrvsahygKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITD----WQTAKIM 78
Cdd:PRK11607 24 NLTKSFD-------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHvppyQRPINMM 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 79 REAVAIVPEgrrvfsrMTVEENLAMgGFFADRSQYQERIQRVYDLFPRLH--ERRIQRAGTMSGGEQQMLAIGRALMSQP 156
Cdd:PRK11607 97 FQSYALFPH-------MTVEQNIAF-GLKQDKLPKAEIASRVNEMLGLVHmqEFAKRKPHQLSGGQRQRVALARSLAKRP 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 754513351 157 RLLLLDEPSLGLAPIIIQQI-FDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:PRK11607 169 KLLLLDEPMGALDKKLRDRMqLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFV 229
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-228 |
2.10e-24 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 101.05 E-value: 2.10e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 2 ENVMLSFDRVSAHY--GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKiMR 79
Cdd:PRK11160 335 DQVSLTLNNVSFTYpdQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAA-LR 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 80 EAVAIVPEGRRVFSRmTVEENLAMGGFFADRSQYQERIQRVydlfpRLHERRIQRAG----------TMSGGEQQMLAIG 149
Cdd:PRK11160 414 QAISVVSQRVHLFSA-TLRDNLLLAAPNASDEALIEVLQQV-----GLEKLLEDDKGlnawlgeggrQLSGGEQRRLGIA 487
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 754513351 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKeGMTIFLVEQNANqALKLADRGYVLENGHVVLEDTGEALLANE 228
Cdd:PRK11160 488 RALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITHRLT-GLEQFDRICVMDNGQIIEQGTHQELLAQQ 564
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
5-234 |
2.14e-24 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 99.92 E-value: 2.14e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREaVAI 84
Cdd:PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR-VAS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRMTVEENLAMGgffadRSQYQERIQRVYDLFPRLHERRIQRAG----------TMSGGEQQMLAIGRALMS 154
Cdd:PRK09536 82 VPQDTSLSFEFDVRQVVEMG-----RTPHRSRFDTWTETDRAAVERAMERTGvaqfadrpvtSLSGGERQRVLLARALAQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 155 QPRLLLLDEPSlglAPIIIQQIFDTIEQLRK---EGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVR 231
Cdd:PRK09536 157 ATPVLLLDEPT---ASLDINHQVRTLELVRRlvdDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLR 233
|
...
gi 754513351 232 SAY 234
Cdd:PRK09536 234 AAF 236
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
5-219 |
2.27e-24 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 100.67 E-value: 2.27e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG-DPRAS-TGKIVFDGKDITDWQTAKIMREAV 82
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGvYPHGTwDGEIYWSGSPLKASNIRDTERAGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 AIVPEGRRVFSRMTVEENLAMGGFF---ADRSQYQERIQRVYDLFPRLHERRIQRA---GTMSGGEQQMLAIGRALMSQP 156
Cdd:TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEItlpGGRMAYNAMYLRAKNLLRELQLDADNVTrpvGDYGGGQQQLVEIAKALNKQA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 754513351 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENG-HVVLED 219
Cdd:TIGR02633 161 RLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGqHVATKD 224
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-227 |
2.70e-24 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 98.20 E-value: 2.70e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHY----GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG---DPRASTGKIVFDGKDITDwQTAKI 77
Cdd:COG0444 1 LLEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGllpPPGITSGEILFDGEDLLK-LSEKE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 78 MREA----VAIV---------PegrrvfsRMTVEENLAMG---GFFADRSQYQERI------------QRVYDLFPrlHE 129
Cdd:COG0444 80 LRKIrgreIQMIfqdpmtslnP-------VMTVGDQIAEPlriHGGLSKAEARERAiellervglpdpERRLDRYP--HE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 130 rriqragtMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGY 208
Cdd:COG0444 151 --------LSGGMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRElGLAILFITHDLGVVAEIADRVA 222
|
250
....*....|....*....
gi 754513351 209 VLENGHVVLEDTGEALLAN 227
Cdd:COG0444 223 VMYAGRIVEEGPVEELFEN 241
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
9-215 |
3.06e-24 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 98.62 E-value: 3.06e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 9 DRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQtAKIMReaVAIVPEG 88
Cdd:PRK10851 6 ANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH-ARDRK--VGFVFQH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 89 RRVFSRMTVEENLAMGGFFADRSQYQERI---QRVYDL-----FPRLHERriqRAGTMSGGEQQMLAIGRALMSQPRLLL 160
Cdd:PRK10851 83 YALFRHMTVFDNIAFGLTVLPRRERPNAAaikAKVTQLlemvqLAHLADR---YPAQLSGGQKQRVALARALAVEPQILL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 161 LDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHV 215
Cdd:PRK10851 160 LDEPFGALDAQVRKELRRWLRQLHEElKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
19-227 |
3.37e-24 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 96.74 E-value: 3.37e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 19 QALHEVSLHIRQGEIVTLIGANGAGKTTLLGT--LCGDPRAST---GKIVFDGKDITDWQTAKI--MREAVAIVPEGRRV 91
Cdd:PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCinLLEQPEAGTirvGDITIDTARSLSQQKGLIrqLRQHVGFVFQNFNL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 92 FSRMTVEENLAMGGFFADRSQYQERIQRVYDLFPRL--------HERRiqragtMSGGEQQMLAIGRALMSQPRLLLLDE 163
Cdd:PRK11264 97 FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVglagketsYPRR------LSGGQQQRVAIARALAMRPEVILFDE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 754513351 164 PSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLAN 227
Cdd:PRK11264 171 PTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
5-220 |
6.09e-24 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 97.56 E-value: 6.09e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHY----GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKiMRE 80
Cdd:PRK11153 1 MIELKNISKVFpqggRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKE-LRK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AvaivpegRR----VF------SRMTVEENLAMGGFFADRSQyQERIQRVYDLFPR--LHERRIQRAGTMSGGEQQMLAI 148
Cdd:PRK11153 80 A-------RRqigmIFqhfnllSSRTVFDNVALPLELAGTPK-AEIKARVTELLELvgLSDKADRYPAQLSGGQKQRVAI 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754513351 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDT 220
Cdd:PRK11153 152 ARALASNPKVLLCDEATSALDPATTRSILELLKDINRElGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
5-164 |
6.84e-24 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 94.86 E-value: 6.84e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG--DPRAST-GKIVFDGKDITDWQTAkimREA 81
Cdd:COG4136 1 MLSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGtlSPAFSAsGEVLLNGRRLTALPAE---QRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 82 VAIVPEGRRVFSRMTVEENLAMGgfFADRSQYQERIQRVydlfprlhERRIQRAG----------TMSGGEQQMLAIGRA 151
Cdd:COG4136 78 IGILFQDDLLFPHLSVGENLAFA--LPPTIGRAQRRARV--------EQALEEAGlagfadrdpaTLSGGQRARVALLRA 147
|
170
....*....|...
gi 754513351 152 LMSQPRLLLLDEP 164
Cdd:COG4136 148 LLAEPRALLLDEP 160
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
15-219 |
8.16e-24 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 94.91 E-value: 8.16e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 15 YGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDitdwqtAKIMREAVAIVPEgrrvfsr 94
Cdd:cd03220 32 VGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV------SSLLGLGGGFNPE------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 95 MTVEENLAMGGFF--ADRSQYQERIQRVYDlFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEpSLGLAPII 172
Cdd:cd03220 99 LTGRENIYLNGRLlgLSRKEIDEKIDEIIE-FSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE-VLAVGDAA 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 754513351 173 IQQ-IFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLED 219
Cdd:cd03220 177 FQEkCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
23-234 |
1.15e-23 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 98.58 E-value: 1.15e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 23 EVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVAIVPEGRRVfSRMTVEENLA 102
Cdd:PRK15439 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQS-SGLYLDAPLA 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 103 MG---------GFFADRSQYQERIQRVY-DLFPRLHERRiQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPII 172
Cdd:PRK15439 360 WNvcalthnrrGFWIKPARENAVLERYRrALNIKFNHAE-QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSA 438
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754513351 173 IQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVRSAY 234
Cdd:PRK15439 439 RNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVDTIMRLAF 500
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-215 |
1.70e-23 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 98.08 E-value: 1.70e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVsahygkiQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG-DPRAS-TGKIVFDGKD-----ITDWQ 73
Cdd:PRK13549 8 MKNITKTFGGV-------KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGvYPHGTyEGEIIFEGEElqasnIRDTE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 74 TA--KIMREAVAIVPEgrrvfsrMTVEENLAMGGFF--ADRSQYQERIQRVYDLFPRLherRI-----QRAGTMSGGEQQ 144
Cdd:PRK13549 81 RAgiAIIHQELALVKE-------LSVLENIFLGNEItpGGIMDYDAMYLRAQKLLAQL---KLdinpaTPVGNLGLGQQQ 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754513351 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENG-HV 215
Cdd:PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGrHI 222
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
5-224 |
2.45e-23 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 94.69 E-value: 2.45e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLL----GTLCGDpRASTGKIVFDGKDIT-DWQTAKIMR 79
Cdd:PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLrhlsGLITGD-KSAGSHIELLGRTVQrEGRLARDIR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 80 EAVA---IVPEGRRVFSRMTVEENLAMGGFFAD-------RSQYQERIQRVYDLFPRLHERRI--QRAGTMSGGEQQMLA 147
Cdd:PRK09984 83 KSRAntgYIFQQFNLVNRLSVLENVLIGALGSTpfwrtcfSWFTREQKQRALQALTRVGMVHFahQRVSTLSGGQQQRVA 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 754513351 148 IGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRK-EGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEAL 224
Cdd:PRK09984 163 IARALMQQAKVILADEPIASLDPESARIVMDTLRDINQnDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
5-234 |
3.25e-23 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 94.31 E-value: 3.25e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWqTAKIMREAVAI 84
Cdd:PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISML-SSRQLARRLAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRMTVEENLAMGgffadRSQY--------QERIQRVYDLFPRLH-----ERRIQragTMSGGEQQMLAIGRA 151
Cdd:PRK11231 81 LPQHHLTPEGITVRELVAYG-----RSPWlslwgrlsAEDNARVNQAMEQTRinhlaDRRLT---DLSGGQRQRAFLAMV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 152 LMSQPRLLLLDEPSLGLApiIIQQI--FDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEA 229
Cdd:PRK11231 153 LAQDTPVVLLDEPTTYLD--INHQVelMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGL 230
|
....*
gi 754513351 230 VRSAY 234
Cdd:PRK11231 231 LRTVF 235
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
11-217 |
5.73e-23 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 96.66 E-value: 5.73e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 11 VSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVAIVPEGRR 90
Cdd:PRK15439 17 ISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 91 VFSRMTVEENLAMGgffadRSQYQERIQRVYDLFPRL--HERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
Cdd:PRK15439 97 LFPNLSVKENILFG-----LPKRQASMQKMKQLLAALgcQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 754513351 169 APIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVL 217
Cdd:PRK15439 172 TPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL 220
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
21-213 |
6.29e-23 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 92.91 E-value: 6.29e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKImreavaIVPEGRRVFSRMTVEEN 100
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM------VVFQNYSLLPWLTVREN 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 101 --LAMGGFFADRSQYQER--IQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQI 176
Cdd:TIGR01184 75 iaLAVDRVLPDLSKSERRaiVEEHIALV-GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNL 153
|
170 180 190
....*....|....*....|....*....|....*...
gi 754513351 177 FDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENG 213
Cdd:TIGR01184 154 QEELMQIWEEhRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
15-216 |
6.73e-23 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 93.44 E-value: 6.73e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 15 YGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGT------LCGDPRAStGKIVFDGKDITDWQTAKiMREAVAIVPEG 88
Cdd:PRK14247 13 FGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVfnrlieLYPEARVS-GEVYLDGQDIFKMDVIE-LRRRVQMVFQI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 89 RRVFSRMTVEENLAMG----GFFADRSQYQERIQRVYD---LFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLL 161
Cdd:PRK14247 91 PNPIPNLSIFENVALGlklnRLVKSKKELQERVRWALEkaqLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLA 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 754513351 162 DEPSLGLAPIIIQQIFDTIEQLRKEgMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:PRK14247 171 DEPTANLDPENTAKIESLFLELKKD-MTIVLVTHFPQQAARISDYVAFLYKGQIV 224
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
21-216 |
7.52e-23 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 91.84 E-value: 7.52e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG--DPRASTGKIVFDGKDITDWQTAKIMreavAIVPEGRRVFSRMTVE 98
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGrrTGLGVSGEVLINGRPLDKRSFRKII----GYVPQDDILHPTLTVR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 99 ENLamggffadrsQYQERIQRVydlfprlherriqragtmSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFD 178
Cdd:cd03213 101 ETL----------MFAAKLRGL------------------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS 152
|
170 180 190
....*....|....*....|....*....|....*....
gi 754513351 179 TIEQLRKEGMT-IFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:cd03213 153 LLRRLADTGRTiICSIHQPSSEIFELFDKLLLLSQGRVI 191
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
11-190 |
1.15e-22 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 95.96 E-value: 1.15e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 11 VSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKI-VFDGkDITDwqtaKIMREAV----AIV 85
Cdd:NF033858 7 VSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVeVLGG-DMAD----ARHRRAVcpriAYM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 PE--GRRVFSRMTVEENLAmggFFA-----DRSQYQERIQRVYD---LFPRLhERriqRAGTMSGGEQQMLAIGRALMSQ 155
Cdd:NF033858 82 PQglGKNLYPTLSVFENLD---FFGrlfgqDAAERRRRIDELLRatgLAPFA-DR---PAGKLSGGMKQKLGLCCALIHD 154
|
170 180 190
....*....|....*....|....*....|....*..
gi 754513351 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE--GMTI 190
Cdd:NF033858 155 PDLLILDEPTTGVDPLSRRQFWELIDRIRAErpGMSV 191
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
5-232 |
1.52e-22 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 92.62 E-value: 1.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGK----IQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwqtakimre 80
Cdd:COG4525 3 MLTVRHVSVRYPGggqpQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTG--------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 avaivPEGRR--VFSR------MTVEENLAMGGFFADRSQyQERIQRVYDLFPR-----LHERRIQRagtMSGGEQQMLA 147
Cdd:COG4525 74 -----PGADRgvVFQKdallpwLNVLDNVAFGLRLRGVPK-AERRARAEELLALvgladFARRRIWQ---LSGGMRQRVG 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 148 IGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL-RKEGMTIFLVEQNANQALKLADRGYVLEN--GHVV--LE-DTG 221
Cdd:COG4525 145 IARALAADPRFLLMDEPFGALDALTREQMQELLLDVwQRTGKGVFLITHSVEEALFLATRLVVMSPgpGRIVerLElDFS 224
|
250
....*....|.
gi 754513351 222 EALLANEAVRS 232
Cdd:COG4525 225 RRFLAGEDARA 235
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
6-218 |
2.05e-22 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 92.05 E-value: 2.05e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwqtakiMREAVAIV 85
Cdd:PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAE------AREDTRLM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 PEGRRVFSRMTVEENLAMGGFFADRSQYQERIQRVydlfpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPs 165
Cdd:PRK11247 87 FQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV-----GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEP- 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 754513351 166 LG----LAPIIIQQIfdtIEQL-RKEGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218
Cdd:PRK11247 161 LGaldaLTRIEMQDL---IESLwQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLD 215
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
1-227 |
2.54e-22 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 91.95 E-value: 2.54e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDIT---------- 70
Cdd:PRK10619 1 MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvrdkdgqlk 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 71 --DWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA---DRSQYQERIQRVYDLFPRLHERRIQRAGTMSGGEQQM 145
Cdd:PRK10619 81 vaDKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVlglSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALL 225
Cdd:PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
|
..
gi 754513351 226 AN 227
Cdd:PRK10619 241 GN 242
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
6-217 |
2.89e-22 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 94.81 E-value: 2.89e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHY--GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWqtakimreava 83
Cdd:COG4618 331 LSVENLTVVPpgSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQW----------- 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 ivpeGRRVFSRM-------------TVEENLA-MGGffADRSQYQE--RIQRVYDL---FPRLHERRIQRAGTM-SGGEQ 143
Cdd:COG4618 400 ----DREELGRHigylpqdvelfdgTIAENIArFGD--ADPEKVVAaaKLAGVHEMilrLPDGYDTRIGEGGARlSGGQR 473
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 754513351 144 QMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANqALKLADRGYVLENGHVVL 217
Cdd:COG4618 474 QRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHRPS-LLAAVDKLLVLRDGRVQA 546
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1-224 |
2.97e-22 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 93.25 E-value: 2.97e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwqtAKIMRE 80
Cdd:PRK11432 2 TQKNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH---RSIQQR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVAIVPEGRRVFSRMTVEENLAMGGFFADRSQyQERIQRV------YDLfPRLHERRIQRagtMSGGEQQMLAIGRALMS 154
Cdd:PRK11432 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPK-EERKQRVkealelVDL-AGFEDRYVDQ---ISGGQQQRVALARALIL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 754513351 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEAL 224
Cdd:PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQfNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
8-216 |
5.24e-22 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 93.87 E-value: 5.24e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 8 FDRVSAHY-GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTL--CGDPraSTGKIVFDGKDITDwQTAKIMREAVAI 84
Cdd:PRK13657 337 FDDVSFSYdNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLqrVFDP--QSGRILIDGTDIRT-VTRASLRRNIAV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRmTVEENLAMGG---------FFADRSQYQERIQRVYDLFprlhERRI-QRAGTMSGGEQQMLAIGRALMS 154
Cdd:PRK13657 414 VFQDAGLFNR-SIEDNIRVGRpdatdeemrAAAERAQAHDFIERKPDGY----DTVVgERGRQLSGGERQRLAIARALLK 488
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKeGMTIFLVeqnanqALKL-----ADRGYVLENGHVV 216
Cdd:PRK13657 489 DPPILILDEATSALDVETEAKVKAALDELMK-GRTTFII------AHRLstvrnADRILVFDNGRVV 548
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
6-215 |
5.79e-22 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 88.81 E-value: 5.79e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQA--LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKImREAVA 83
Cdd:cd03246 1 LEVENVSFRYPGAEPpvLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNEL-GDHVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 IVPEGRRVFSRmTVEENLamggffadrsqyqeriqrvydlfprlherriqragtMSGGEQQMLAIGRALMSQPRLLLLDE 163
Cdd:cd03246 80 YLPQDDELFSG-SIAENI------------------------------------LSGGQRQRLGLARALYGNPRILVLDE 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 754513351 164 PSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANqALKLADRGYVLENGHV 215
Cdd:cd03246 123 PNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TLASADRILVLEDGRV 173
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
8-230 |
7.36e-22 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 90.29 E-value: 7.36e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 8 FDRVSAHY---GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG--DPRAstGKIVFDGKDITDwQTAKIMREAV 82
Cdd:cd03249 3 FKNVSFRYpsrPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERfyDPTS--GEILLDGVDIRD-LNLRWLRSQI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 AIVPEGRRVFSrMTVEENLAMGGFFADRSQyQERIQRVYDL------FPRLHERRI-QRAGTMSGGEQQMLAIGRALMSQ 155
Cdd:cd03249 80 GLVSQEPVLFD-GTIAENIRYGKPDATDEE-VEEAAKKANIhdfimsLPDGYDTLVgERGSQLSGGQKQRIAIARALLRN 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 754513351 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLRKeGMTIFLVEQNANqALKLADRGYVLENGHVVLEDTGEALLANEAV 230
Cdd:cd03249 158 PKILLLDEATSALDAESEKLVQEALDRAMK-GRTTIVIAHRLS-TIRNADLIAVLQNGQVVEQGTHDELMAQKGV 230
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
1-215 |
7.57e-22 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 92.40 E-value: 7.57e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSfdRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKimrE 80
Cdd:PRK11000 1 MASVTLR--NVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE---R 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVAIVPEGRRVFSRMTVEENLAMGGFFA--DRSQYQERIQRVYDLFPRLH--ERRIQragTMSGGEQQMLAIGRALMSQP 156
Cdd:PRK11000 76 GVGMVFQSYALYPHLSVAENMSFGLKLAgaKKEEINQRVNQVAEVLQLAHllDRKPK---ALSGGQRQRVAIGRTLVAEP 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHV 215
Cdd:PRK11000 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRlGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
19-216 |
1.02e-21 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 89.64 E-value: 1.02e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 19 QALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG-DPRAST--GKIVFDGKDITdwqtAKIMREAVAIVPEGRRVFSRM 95
Cdd:cd03234 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGrVEGGGTtsGQILFNGQPRK----PDQFQKCVAYVRQDDILLPGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 96 TVEENLAMGGFFADRSQYQERIQRVYDLFPRLHERRIQRAGTM-----SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAP 170
Cdd:cd03234 97 TVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNlvkgiSGGERRRVSIAVQLLWDPKVLILDEPTSGLDS 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 754513351 171 IIIQQIFDTIEQLRKEGMTIFL-VEQNANQALKLADRGYVLENGHVV 216
Cdd:cd03234 177 FTALNLVSTLSQLARRNRIVILtIHQPRSDLFRLFDRILLLSSGEIV 223
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
6-226 |
1.12e-21 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 89.60 E-value: 1.12e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYG-KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG--DPraSTGKIVFDGKDITDWqTAKIMREAV 82
Cdd:cd03253 1 IEFENVTFAYDpGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRfyDV--SSGSILIDGQDIREV-TLDSLRRAI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 AIVPEGRRVFSRmTVEENLAMGGFFADRSQYQE--RIQRVYDL---FPRLHERRIQRAGTM-SGGEQQMLAIGRALMSQP 156
Cdd:cd03253 78 GVVPQDTVLFND-TIGYNIRYGRPDATDEEVIEaaKAAQIHDKimrFPDGYDTIVGERGLKlSGGEKQRVAIARAILKNP 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 754513351 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLveqnanqALKL-----ADRGYVLENGHVVLEDTGEALLA 226
Cdd:cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSKGRTTIVI-------AHRLstivnADKIIVLKDGRIVERGTHEELLA 224
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
21-234 |
3.32e-21 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 89.08 E-value: 3.32e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREaVAIVPEGRRVFSRMTVEEN 100
Cdd:PRK10575 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK-VAYLPQQLPAAEGMTVREL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 101 LAMG--------GFF--ADRSQYQERIQRVyDLFPRLHerriQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAp 170
Cdd:PRK10575 106 VAIGrypwhgalGRFgaADREKVEEAISLV-GLKPLAH----RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD- 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 171 iIIQQI--FDTIEQL-RKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVRSAY 234
Cdd:PRK10575 180 -IAHQVdvLALVHRLsQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIY 245
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
3-224 |
4.62e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 89.37 E-value: 4.62e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 3 NVMLSFDRVSAHYgkIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVF---DGKDITDWQTAKIMR 79
Cdd:PRK13651 7 NIVKIFNKKLPTE--LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWifkDEKNKKKTKEKEKVL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 80 EAVAI----------VPEGRR----VFS-------RMTVEENLAMG--GFFADRSQYQERIQRVYDLFPrLHERRIQRAG 136
Cdd:PRK13651 85 EKLVIqktrfkkikkIKEIRRrvgvVFQfaeyqlfEQTIEKDIIFGpvSMGVSKEEAKKRAAKYIELVG-LDESYLQRSP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 137 -TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHV 215
Cdd:PRK13651 164 fELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKI 243
|
250
....*....|
gi 754513351 216 VLE-DTGEAL 224
Cdd:PRK13651 244 IKDgDTYDIL 253
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-222 |
5.09e-21 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 88.92 E-value: 5.09e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHY--GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwQTAKIM 78
Cdd:PRK13635 1 MKEEIIRVEHISFRYpdAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSE-ETVWDV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 79 REAVAIV---PEGRRVFSrmTVEENLAMG----GFfaDRSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRA 151
Cdd:PRK13635 80 RRQVGMVfqnPDNQFVGA--TVQDDVAFGleniGV--PREEMVERVDQALRQV-GMEDFLNREPHRLSGGQKQRVAIAGV 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754513351 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGM-TIFLVEQNANQALKlADRGYVLENGHVVLEDTGE 222
Cdd:PRK13635 155 LALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGiTVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPE 225
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
21-216 |
5.46e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 88.18 E-value: 5.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTL-----CGDPRAST-GKIVFDGKDITDWQTAKiMREAVAIVPEGRRVFSR 94
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLnrlieIYDSKIKVdGKVLYFGKDIFQIDAIK-LRKEVGMVFQQPNPFPH 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 95 MTVEENLAM----GGFFADRS--QYQERIQRVYDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
Cdd:PRK14246 105 LSIYDNIAYplksHGIKEKREikKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMI 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 754513351 169 APIIIQQIFDTIEQLRKEgMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:PRK14246 185 DIVNSQAIEKLITELKNE-IAIVIVSHNPQQVARVADYVAFLYNGELV 231
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
6-226 |
5.50e-21 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 90.93 E-value: 5.50e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYG--KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLcgdPR---ASTGKIVFDGKDITDWQTAKiMRE 80
Cdd:TIGR02203 331 VEFRNVTFRYPgrDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLI---PRfyePDSGQILLDGHDLADYTLAS-LRR 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVAIVPEGRRVFSRmTVEENLAMG-GFFADRSQYQERIQRVY-----DLFPR-LHERRIQRAGTMSGGEQQMLAIGRALM 153
Cdd:TIGR02203 407 QVALVSQDVVLFND-TIANNIAYGrTEQADRAEIERALAAAYaqdfvDKLPLgLDTPIGENGVLLSGGQRQRLAIARALL 485
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754513351 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTifLVEQNANQALKLADRGYVLENGHVVLEDTGEALLA 226
Cdd:TIGR02203 486 KDAPILILDEATSALDNESERLVQAALERLMQGRTT--LVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
5-231 |
6.73e-21 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 88.32 E-value: 6.73e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHY---------GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDIT--DWQ 73
Cdd:TIGR02769 2 LLEVRDVTHTYrtgglfgakQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYqlDRK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 74 TAKIMREAVAIVPEG--RRVFSRMTVEENLA--MGGFFA-DRSQYQERIQRVYDL--FPRLHERRIQRagTMSGGEQQML 146
Cdd:TIGR02769 82 QRRAFRRDVQLVFQDspSAVNPRMTVRQIIGepLRHLTSlDESEQKARIAELLDMvgLRSEDADKLPR--QLSGGQLQRI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 147 AIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFL-VEQNANQALKLADRGYVLENGHVVLE-DTGEAL 224
Cdd:TIGR02769 160 NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLfITHDLRLVQSFCQRVAVMDKGQIVEEcDVAQLL 239
|
....*...
gi 754513351 225 -LANEAVR 231
Cdd:TIGR02769 240 sFKHPAGR 247
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1-206 |
8.21e-21 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 87.18 E-value: 8.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHY--GKIQA--LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQT-- 74
Cdd:PRK11629 1 MNKILLQCDNLCKRYqeGSVQTdvLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSaa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 75 -AKIMREAVAIVPEGRRVFSRMTVEENLAM----GGffADRSQYQERIQRVYDLFPrLHERRIQRAGTMSGGEQQMLAIG 149
Cdd:PRK11629 81 kAELRNQKLGFIYQFHHLLPDFTALENVAMplliGK--KKPAEINSRALEMLAAVG-LEHRANHRPSELSGGERQRVAIA 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVeqnANQALKLADR 206
Cdd:PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLV---VTHDLQLAKR 211
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
6-226 |
9.94e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 88.30 E-value: 9.94e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGK-----IQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIM-- 78
Cdd:PRK13646 3 IRFDNVSYTYQKgtpyeHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIrp 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 79 -REAVAIV---PEGrRVFSRmTVEENLAMG--GFFADRSQYQEriqRVYDLFPRL-HERRI--QRAGTMSGGEQQMLAIG 149
Cdd:PRK13646 83 vRKRIGMVfqfPES-QLFED-TVEREIIFGpkNFKMNLDEVKN---YAHRLLMDLgFSRDVmsQSPFQMSGGQMRKIAIV 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 754513351 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLR-KEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLA 226
Cdd:PRK13646 158 SILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQtDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
19-235 |
1.18e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 87.96 E-value: 1.18e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 19 QALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwQTA----KIMREAVAIV---PEGRrV 91
Cdd:PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITP-ETGnknlKKLRKKVSLVfqfPEAQ-L 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 92 FSRmTVEENLAMG----GFFAD--RSQYQERIQRVydlfpRLHERRIQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDEP 164
Cdd:PRK13641 99 FEN-TVLKDVEFGpknfGFSEDeaKEKALKWLKKV-----GLSEDLISKSPfELSGGQMRRVAIAGVMAYEPEILCLDEP 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754513351 165 SLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLAN-EAVRSAYL 235
Cdd:PRK13641 173 AAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDkEWLKKHYL 244
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
6-226 |
1.24e-20 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 90.18 E-value: 1.24e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYG-KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAkIMREAVAI 84
Cdd:TIGR01193 474 IVINDVSYSYGyGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRH-TLRQFINY 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRmTVEENLAMGgffADRSQYQERIQRVYDL---------FPR-LHERRIQRAGTMSGGEQQMLAIGRALMS 154
Cdd:TIGR01193 553 LPQEPYIFSG-SILENLLLG---AKENVSQDEIWAACEIaeikddienMPLgYQTELSEEGSSISGGQKQRIALARALLT 628
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754513351 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEgmTIFLVEQNANQAlKLADRGYVLENGHVVLEDTGEALLA 226
Cdd:TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLNLQDK--TIIFVAHRLSVA-KQSDKIIVLDHGKIIEQGSHDELLD 697
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
6-170 |
1.37e-20 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 89.73 E-value: 1.37e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHY-GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG--DPRasTGKIVFDGKDITDWQTAKImREAV 82
Cdd:TIGR02868 335 LELRDLSAGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGllDPL--QGEVTLDGVPVSSLDQDEV-RRRV 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 AIVPEGRRVFSrMTVEENLAMGGFFADRSQYQERIQRV------YDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156
Cdd:TIGR02868 412 SVCAQDAHLFD-TTVRENLRLARPDATDEELWAALERVgladwlRALPDGLDTVLGEGGARLSGGERQRLALARALLADA 490
|
170
....*....|....
gi 754513351 157 RLLLLDEPSLGLAP 170
Cdd:TIGR02868 491 PILLLDEPTEHLDA 504
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
17-190 |
1.67e-20 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 86.33 E-value: 1.67e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 17 KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKD-------ITDWQTAKIMREAVAIVPEGR 89
Cdd:COG4778 23 RLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDGgwvdlaqASPREILALRRRTIGYVSQFL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 90 RVFSRMT----VEENL-AMGgffADRSQYQERIQrvyDLFPRLH--ERRIQRA-GTMSGGEQQMLAIGRALMSQPRLLLL 161
Cdd:COG4778 103 RVIPRVSaldvVAEPLlERG---VDREEARARAR---ELLARLNlpERLWDLPpATFSGGEQQRVNIARGFIADPPLLLL 176
|
170 180
....*....|....*....|....*....
gi 754513351 162 DEPSLGLAPIIIQQIFDTIEQLRKEGMTI 190
Cdd:COG4778 177 DEPTASLDAANRAVVVELIEEAKARGTAI 205
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
21-216 |
1.91e-20 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 89.34 E-value: 1.91e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTL-CGDPRAST--GKIVFDGKDITDWQtakiMREAVAIVPEGRRVFSRMTV 97
Cdd:TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALaFRSPKGVKgsGSVLLNGMPIDAKE----MRAISAYVQQDDLFIPTLTV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 98 EENLA-MGGFFADRSQYQ-ERIQRVYDLFPRLHER-----RIQRAGTM---SGGEQQMLAIGRALMSQPRLLLLDEPSLG 167
Cdd:TIGR00955 117 REHLMfQAHLRMPRRVTKkEKRERVDEVLQALGLRkcantRIGVPGRVkglSGGERKRLAFASELLTDPPLLFCDEPTSG 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 754513351 168 LAPIIIQQIFDTIEQLRKEGMTIFL-VEQNANQALKLADRGYVLENGHVV 216
Cdd:TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICtIHQPSSELFELFDKIILMAEGRVA 246
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
3-215 |
2.00e-20 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 89.11 E-value: 2.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 3 NVMLSFDRVSAHY---GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGD-PRASTGKIVFDGKDITDWQTAKIM 78
Cdd:TIGR02633 255 DVILEARNLTCWDvinPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAyPGKFEGNVFINGKPVDIRNPAQAI 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 79 REAVAIVPEGRR---VFSRMTVEENLAMGGF--FADRSQYQE--RIQRVYDLFPRLHERRIQ---RAGTMSGGEQQMLAI 148
Cdd:TIGR02633 335 RAGIAMVPEDRKrhgIVPILGVGKNITLSVLksFCFKMRIDAaaELQIIGSAIQRLKVKTASpflPIGRLSGGNQQKAVL 414
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHV 215
Cdd:TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
5-234 |
2.62e-20 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 86.29 E-value: 2.62e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREaVAI 84
Cdd:COG4604 1 MIEIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAKR-LAI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRMTVEENLAMGGF--------FADRSQYQERIQRVyDLFPrLHERRIqraGTMSGGEQQMLAIGRALMSQP 156
Cdd:COG4604 80 LRQENHINSRLTVRELVAFGRFpyskgrltAEDREIIDEAIAYL-DLED-LADRYL---DELSGGQRQRAFIAMVLAQDT 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 754513351 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVRSAY 234
Cdd:COG4604 155 DYVLLDEPLNNLDMKHSVQMMKLLRRLADElGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEEIITPEVLSDIY 233
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
20-220 |
3.51e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 86.68 E-value: 3.51e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 20 ALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVAIV---PEGRRVFSrmT 96
Cdd:PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVfqnPDNQIVAT--I 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 97 VEENLAMG----GFFAD--RSQYQERIQRVydlfpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAP 170
Cdd:PRK13633 103 VEEDVAFGpenlGIPPEeiRERVDESLKKV-----GMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 754513351 171 IIIQQIFDTIEQL-RKEGMTIFLVEQNANQALKlADRGYVLENGHVVLEDT 220
Cdd:PRK13633 178 SGRREVVNTIKELnKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGT 227
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
6-235 |
3.83e-20 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 85.62 E-value: 3.83e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYG--KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREaVA 83
Cdd:cd03252 1 ITFEHVRFRYKpdGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQ-VG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 IVPEGRRVFSRmTVEENLAMG--GFFADRSQYQERIQRVYDLFPRLHERRIQ----RAGTMSGGEQQMLAIGRALMSQPR 157
Cdd:cd03252 80 VVLQENVLFNR-SIRDNIALAdpGMSMERVIEAAKLAGAHDFISELPEGYDTivgeQGAGLSGGQRQRIAIARALIHNPR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 158 LLLLDEPSLGL----APIIIQQIFDTIeqlrkEGMTIFLVEQNANqALKLADRGYVLENGHVVLEDTGEALLANEAvRSA 233
Cdd:cd03252 159 ILIFDEATSALdyesEHAIMRNMHDIC-----AGRTVIIIAHRLS-TVKNADRIIVMEKGRIVEQGSHDELLAENG-LYA 231
|
..
gi 754513351 234 YL 235
Cdd:cd03252 232 YL 233
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
1-228 |
8.21e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 85.62 E-value: 8.21e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHY--GKIQALHEVSLHIRQGEIVTLIGANGAGKTT----LLGTLCGDPRASTgKIVFDGKDITDwQT 74
Cdd:PRK13640 1 MKDNIVEFKHVSFTYpdSKKPALNDISFSIPRGSWTALIGHNGSGKSTisklINGLLLPDDNPNS-KITVDGITLTA-KT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 75 AKIMREAVAIV---PEGRrvFSRMTVEENLAMGgfFADRSQYQERIQR-VYDLFPRLHERRIQRA--GTMSGGEQQMLAI 148
Cdd:PRK13640 79 VWDIREKVGIVfqnPDNQ--FVGATVGDDVAFG--LENRAVPRPEMIKiVRDVLADVGMLDYIDSepANLSGGQKQRVAI 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQAlKLADRGYVLENGHVVLEDTGEALLAN 227
Cdd:PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKnNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSK 233
|
.
gi 754513351 228 E 228
Cdd:PRK13640 234 V 234
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
20-220 |
1.06e-19 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 87.76 E-value: 1.06e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 20 ALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITdwQTAKIMREAVAIVPEGRRVFSRMTVEE 99
Cdd:TIGR01257 945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE--TNLDAVRQSLGMCPQHNILFHHLTVAE 1022
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 100 NLAMGGFFADRSQYQERIQRVYDLFPR-LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFD 178
Cdd:TIGR01257 1023 HILFYAQLKGRSWEEAQLEMEAMLEDTgLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWD 1102
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 754513351 179 TIEQLRkEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDT 220
Cdd:TIGR01257 1103 LLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
16-235 |
1.15e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 85.24 E-value: 1.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 16 GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwQTAKIMREAVAIVPEG--RRVFS 93
Cdd:PRK13652 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITK-ENIREVRKFVGLVFQNpdDQIFS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 94 RmTVEENLAMG--GFFADRSQYQERIQRVYDLFPrLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPI 171
Cdd:PRK13652 94 P-TVEQDIAFGpiNLGLDEETVAHRVSSALHMLG-LEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQ 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 172 IIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDT-GEALLANEAVRSAYL 235
Cdd:PRK13652 172 GVKELIDFLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTvEEIFLQPDLLARVHL 237
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
16-227 |
1.29e-19 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 87.05 E-value: 1.29e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 16 GKIQALHEVSLHIRQGEIVTLIGANGAGKTTL----LGTLcgdprASTGKIVFDGKDITDWQTAKI--MREAVAIV---P 86
Cdd:COG4172 297 GHVKAVDGVSLTLRRGETLGLVGESGSGKSTLglalLRLI-----PSEGEIRFDGQDLDGLSRRALrpLRRRMQVVfqdP 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 87 egrrvFS----RMTVEENLAMG-GFFADRSQYQERIQRVYDL-------------FPrlHErriqragtMSGGEQQMLAI 148
Cdd:COG4172 372 -----FGslspRMTVGQIIAEGlRVHGPGLSAAERRARVAEAleevgldpaarhrYP--HE--------FSGGQRQRIAI 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL-RKEGMT-IF------LVEQnanqalkLADRGYVLENGHVVLEDT 220
Cdd:COG4172 437 ARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLqREHGLAyLFishdlaVVRA-------LAHRVMVMKDGKVVEQGP 509
|
....*..
gi 754513351 221 GEALLAN 227
Cdd:COG4172 510 TEQVFDA 516
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
12-205 |
1.35e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 84.70 E-value: 1.35e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 12 SAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLC------GDPRAStGKIVFDGKDITDWQT-AKIMREAVAI 84
Cdd:PRK14258 14 SFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNrmneleSEVRVE-GRVEFFNQNIYERRVnLNRLRRQVSM 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSrMTVEENLAMG-GFFADRSQYQ-----ERIQRVYDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL 158
Cdd:PRK14258 93 VHPKPNLFP-MSVYDNVAYGvKIVGWRPKLEiddivESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKV 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 754513351 159 LLLDEPSLGLAPIIIQQIFDTIEQLR-KEGMTIFLVEQNANQALKLAD 205
Cdd:PRK14258 172 LLMDEPCFGLDPIASMKVESLIQSLRlRSELTMVIVSHNLHQVSRLSD 219
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
6-236 |
1.92e-19 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 85.86 E-value: 1.92e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKD---ITDWQTAKIMREAV 82
Cdd:PRK10070 29 LSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDiakISDAELREVRRKKI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 AIVPEGRRVFSRMTVEENLAMGGFFADRSQyQERIQRVYDLFPRLHERRIQRA--GTMSGGEQQMLAIGRALMSQPRLLL 160
Cdd:PRK10070 109 AMVFQSFALMPHMTVLDNTAFGMELAGINA-EERREKALDALRQVGLENYAHSypDELSGGMRQRVGLARALAINPDILL 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 161 LDEPSLGLAPIIIQQIFDTIEQLR-KEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALL---ANEAVRSAYLG 236
Cdd:PRK10070 188 MDEAFSALDPLIRTEMQDELVKLQaKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILnnpANDYVRTFFRG 267
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
14-205 |
2.24e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 83.74 E-value: 2.24e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 14 HYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGT------LCGDPRAStGKIVFDGKDITDWQTAKI-MREAVAIVP 86
Cdd:PRK14267 13 YYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTfnrlleLNEEARVE-GEVRLFGRNIYSPDVDPIeVRREVGMVF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 87 EGRRVFSRMTVEENLAMG----GFFADRSQYQERIQ---RVYDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159
Cdd:PRK14267 92 QYPNPFPHLTIYDNVAIGvklnGLVKSKKELDERVEwalKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKIL 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 754513351 160 LLDEPSLGLAPIIIQQIFDTIEQLRKEgMTIFLVEQNANQALKLAD 205
Cdd:PRK14267 172 LMDEPTANIDPVGTAKIEELLFELKKE-YTIVLVTHSPAQAARVSD 216
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
20-217 |
2.37e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 84.41 E-value: 2.37e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 20 ALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDW---QTAKIMREAVAIV---PEGRrVFS 93
Cdd:PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTsknKDIKQIRKKVGLVfqfPESQ-LFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 94 RmTVEENLAMG-GFFADRSQYQERIQRVYDLFPRLHERRIQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPI 171
Cdd:PRK13649 101 E-TVLKDVAFGpQNFGVSQEEAEALAREKLALVGISESLFEKNPfELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 754513351 172 IIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVL 217
Cdd:PRK13649 180 GRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVL 225
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
19-233 |
2.49e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 84.02 E-value: 2.49e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 19 QALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwQTAKIMREAVAIV---PEGRrVFSrM 95
Cdd:PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNA-ENEKWVRSKVGLVfqdPDDQ-VFS-S 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 96 TVEENLAMG--GFFADRSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIII 173
Cdd:PRK13647 96 TVWDDVAFGpvNMGLDKDEVERRVEEALKAV-RMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQ 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 174 QQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDtGEALLANEAVRSA 233
Cdd:PRK13647 175 ETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG-DKSLLTDEDIVEQ 233
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
16-216 |
2.67e-19 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 86.32 E-value: 2.67e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 16 GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTL-CGDpRASTGKIVFDGKDITDW---QTAKIMREAVAIVPEGRRV 91
Cdd:PRK10535 19 EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILgCLD-KPTSGTYRVAGQDVATLdadALAQLRREHFGFIFQRYHL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 92 FSRMTVEENLAMGGFFADRSQyQERIQRVYDLFPR--LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLA 169
Cdd:PRK10535 98 LSHLTAAQNVEVPAVYAGLER-KQRLLRAQELLQRlgLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 754513351 170 PIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKlADRGYVLENGHVV 216
Cdd:PRK10535 177 SHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQ-AERVIEIRDGEIV 222
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
20-227 |
3.82e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 83.92 E-value: 3.82e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 20 ALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDIT---DWQTAKIMREAVAIV---PEgRRVFS 93
Cdd:PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITagkKNKKLKPLRKKVGIVfqfPE-HQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 94 RmTVEENLAMG--GFFADRSQYQERIQRVYDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPI 171
Cdd:PRK13634 101 E-TVEKDICFGpmNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 172 IIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLAN 227
Cdd:PRK13634 180 GRKEMMEMFYKLHKEkGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
21-234 |
3.87e-19 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 83.08 E-value: 3.87e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDP--RASTGKIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVE 98
Cdd:TIGR01978 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPsyEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 99 ENL---------AMGGFFADRSQYQERIQR---VYDLFPRLHERRIQRAgtMSGGEQQMLAIGRALMSQPRLLLLDEPSL 166
Cdd:TIGR01978 96 EFLrsalnarrsARGEEPLDLLDFEKLLKEklaLLDMDEEFLNRSVNEG--FSGGEKKRNEILQMALLEPKLAILDEIDS 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 167 GLAPIIIQQIFDTIEQLRKEGMTIFLVEQNaNQALKL--ADRGYVLENGHVVLEdtGEALLANEAVRSAY 234
Cdd:TIGR01978 174 GLDIDALKIVAEGINRLREPDRSFLIITHY-QRLLNYikPDYVHVLLDGRIVKS--GDVELAKELEAKGY 240
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-216 |
4.16e-19 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 83.05 E-value: 4.16e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKI--- 77
Cdd:PRK11701 2 MDQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALsea 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 78 -----MREAVAIVPEGRRVFSRMTV-------EENLAMGG--FFADRSQYQERIQRVydlfpRLHERRI-QRAGTMSGGE 142
Cdd:PRK11701 82 errrlLRTEWGFVHQHPRDGLRMQVsaggnigERLMAVGArhYGDIRATAGDWLERV-----EIDAARIdDLPTTFSGGM 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 754513351 143 QQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRElGLAVVIVTHDLAVARLLAHRLLVMKQGRVV 231
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
18-216 |
7.46e-19 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 84.84 E-value: 7.46e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 18 IQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG-DPRAS-TGKIVFDG-----KDITDWQTAK--IMREAVAIVPEg 88
Cdd:NF040905 14 VKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGvYPHGSyEGEILFDGevcrfKDIRDSEALGivIIHQELALIPY- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 89 rrvfsrMTVEENLAMGGFFADRS--QYQERIQRVYDLFPR--LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP 164
Cdd:NF040905 93 ------LSIAENIFLGNERAKRGviDWNETNRRARELLAKvgLDESPDTLVTDIGVGKQQLVEIAKALSKDVKLLILDEP 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 754513351 165 SLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:NF040905 167 TAALNEEDSAALLDLLLELKAQGITSIIISHKLNEIRRVADSITVLRDGRTI 218
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
8-224 |
7.84e-19 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 82.05 E-value: 7.84e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 8 FDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKditdwqTAKIMREAVAIVPE 87
Cdd:COG1134 29 LRRRRTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNGR------VSALLELGAGFHPE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 88 grrvfsrMTVEEN-----LAMGgffADRSQYQERIQRVYDlFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162
Cdd:COG1134 103 -------LTGRENiylngRLLG---LSRKEIDEKFDEIVE-FAELGDFIDQPVKTYSSGMRARLAFAVATAVDPDILLVD 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 163 EpslGLA---PIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLE-DTGEAL 224
Cdd:COG1134 172 E---VLAvgdAAFQKKCLARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDgDPEEVI 234
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
8-164 |
9.90e-19 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 83.24 E-value: 9.90e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 8 FDRVSAHygkIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKiMREAvaivpe 87
Cdd:COG4608 24 FGRTVGV---VKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSGRE-LRPL------ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 88 gRR----VF--------SRMTVEENLAMG----GFfADRSQYQERIQ----RV------YDLFPrlHErriqragtMSGG 141
Cdd:COG4608 94 -RRrmqmVFqdpyaslnPRMTVGDIIAEPlrihGL-ASKAERRERVAelleLVglrpehADRYP--HE--------FSGG 161
|
170 180
....*....|....*....|...
gi 754513351 142 EQQMLAIGRALMSQPRLLLLDEP 164
Cdd:COG4608 162 QRQRIGIARALALNPKLIVCDEP 184
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
4-218 |
1.06e-18 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 84.19 E-value: 1.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 4 VMLSFDRVSAHygkiqALHE-VSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAV 82
Cdd:PRK11288 256 VRLRLDGLKGP-----GLREpISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 AIVPEGRR---VFSRMTVEENLAM--------GGFFADRSQYQE----RIQRVYDLFPRLHerriQRAGTMSGGEQQMLA 147
Cdd:PRK11288 331 MLCPEDRKaegIIPVHSVADNINIsarrhhlrAGCLINNRWEAEnadrFIRSLNIKTPSRE----QLIMNLSGGNQQKAI 406
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 754513351 148 IGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218
Cdd:PRK11288 407 LGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE 477
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
8-164 |
1.09e-18 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 84.35 E-value: 1.09e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 8 FDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDgKDITdwqtakimreaVAIVPE 87
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIP-KGLR-----------IGYLPQ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 88 GRRVFSRMTVEENLAMG---------------GFFADRSQYQERIQRVYDLFPRLH----ERRIQRA------------- 135
Cdd:COG0488 69 EPPLDDDLTVLDTVLDGdaelraleaeleeleAKLAEPDEDLERLAELQEEFEALGgweaEARAEEIlsglgfpeedldr 148
|
170 180 190
....*....|....*....|....*....|.
gi 754513351 136 --GTMSGGEQQMLAIGRALMSQPRLLLLDEP 164
Cdd:COG0488 149 pvSELSGGWRRRVALARALLSEPDLLLLDEP 179
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
3-230 |
1.23e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 81.96 E-value: 1.23e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 3 NVMLSFDRVSAHYG--KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwQTAKIMRE 80
Cdd:PRK13632 5 SVMIKVENVSFSYPnsENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISK-ENLKEIRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVAIV---PEGRrvFSRMTVEENLAMGgfFADRSQYQERIQR-VYDLfprlherrIQRAGT----------MSGGEQQML 146
Cdd:PRK13632 84 KIGIIfqnPDNQ--FIGATVEDDIAFG--LENKKVPPKKMKDiIDDL--------AKKVGMedyldkepqnLSGGQKQRV 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 147 AIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGM-TIFLVEQNANQALkLADRGYVLENGHVVLEDTGEALL 225
Cdd:PRK13632 152 AIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKkTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEIL 230
|
....*
gi 754513351 226 ANEAV 230
Cdd:PRK13632 231 NNKEI 235
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
1-213 |
1.33e-18 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 84.01 E-value: 1.33e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVsahygkiQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDItDWQTAK-IMR 79
Cdd:PRK10982 1 MSNISKSFPGV-------KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI-DFKSSKeALE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 80 EAVAIVPEGRRVFSRMTVEENLAMG-----GFFADRSQYQERIQRVY-----DLFPRlherriQRAGTMSGGEQQMLAIG 149
Cdd:PRK10982 73 NGISMVHQELNLVLQRSVMDNMWLGryptkGMFVDQDKMYRDTKAIFdeldiDIDPR------AKVATLSVSQMQMIEIA 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 754513351 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENG 213
Cdd:PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDG 210
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
17-213 |
1.63e-18 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 83.83 E-value: 1.63e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 17 KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGD-PRASTGKIVFDGKDITDWQTAKIMREAVAIVPEGRR---VF 92
Cdd:PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAyPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKrdgIV 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 93 SRMTVEENLAM-------GGFFADRSQYQERIQRVYDlfpRLHERR---IQRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162
Cdd:PRK13549 354 PVMGVGKNITLaaldrftGGSRIDDAAELKTILESIQ---RLKVKTaspELAIARLSGGNQQKAVLAKCLLLNPKILILD 430
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 754513351 163 EPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENG 213
Cdd:PRK13549 431 EPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEG 481
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
5-224 |
1.82e-18 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 81.31 E-value: 1.82e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVAI 84
Cdd:PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRMTVEEnlamggffADRSQYQERIQRVYdlfprLHERRIQRagtMSGGEQQMLAIGRALMSQPRLLLLDEP 164
Cdd:PRK09544 84 LTVNRFLRLRPGTKK--------EDILPALKRVQAGH-----LIDAPMQK---LSGGETQRVLLARALLNRPQLLVLDEP 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 754513351 165 SLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLeNGHVVLEDTGEAL 224
Cdd:PRK09544 148 TQGVDVNGQVALYDLIDQLRRElDCAVLMVSHDLHLVMAKTDEVLCL-NHHICCSGTPEVV 207
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
8-216 |
2.81e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 81.59 E-value: 2.81e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 8 FDRVSAHYGK-----IQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGK-IVFDGK---DITDWQTAKIM 78
Cdd:PRK13645 9 LDNVSYTYAKktpfeFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQtIVGDYAipaNLKKIKEVKRL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 79 REAVAIV---PEgRRVFSRmTVEENLAMG--GFFADRSQYQERIQRVYDL--FPRLHERRiqRAGTMSGGEQQMLAIGRA 151
Cdd:PRK13645 89 RKEIGLVfqfPE-YQLFQE-TIEKDIAFGpvNLGENKQEAYKKVPELLKLvqLPEDYVKR--SPFELSGGQKRRVALAGI 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:PRK13645 165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEyKKRIIMVTHNMDQVLRIADEVIVMHEGKVI 230
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
15-193 |
3.01e-18 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 79.59 E-value: 3.01e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 15 YGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDitdwqtakimreAVAIVPEGRRVFSR 94
Cdd:NF040873 2 YGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGGA------------RVAYVPQRSEVPDS 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 95 M--TVEENLAMGGF----------FADRSQYQERIQRVydlfpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162
Cdd:NF040873 70 LplTVRDLVAMGRWarrglwrrltRDDRAAVDDALERV-----GLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLD 144
|
170 180 190
....*....|....*....|....*....|.
gi 754513351 163 EPSLGLAPIIIQQIFDTIEQLRKEGMTIFLV 193
Cdd:NF040873 145 EPTTGLDAESRERIIALLAEEHARGATVVVV 175
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
15-216 |
4.68e-18 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 80.07 E-value: 4.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 15 YGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGkditdwqtakimreavaIVPEGRRvfsr 94
Cdd:cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG-----------------LVPWKRR---- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 95 mtvEENLAMGGF-FADRSQYQ---------ERIQRVYDLFPRLHERRIQRAGTM--------------SGGEQQMLAIGR 150
Cdd:cd03267 90 ---KKFLRRIGVvFGQKTQLWwdlpvidsfYLLAAIYDLPPARFKKRLDELSELldleelldtpvrqlSLGQRMRAEIAA 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:cd03267 167 ALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRErGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
23-231 |
5.01e-18 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 81.46 E-value: 5.01e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 23 EVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwqtakiMREAVAIVPEGRRV---------FS 93
Cdd:PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFD------AEKGICLPPEKRRIgyvfqdarlFP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 94 RMTVEENLAMGGFFADRSQYQE-----RIQRVYDLFPrlherriqraGTMSGGEQQMLAIGRALMSQPRLLLLDEPslgL 168
Cdd:PRK11144 90 HYKVRGNLRYGMAKSMVAQFDKivallGIEPLLDRYP----------GSLSGGEKQRVAIGRALLTAPELLLMDEP---L 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 169 APIII---QQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVR 231
Cdd:PRK11144 157 ASLDLprkRELLPYLERLAREiNIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAMR 223
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
21-228 |
7.24e-18 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 79.34 E-value: 7.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDP--RASTGKIVFDGKDITDWQT---AK------------------- 76
Cdd:COG0396 16 LKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPkyEVTSGSILLDGEDILELSPderARagiflafqypveipgvsvs 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 77 -IMREAVAIVPEGR--RVFSRMTVEENLAMGGF---FADRSqyqeriqrVYDLFprlherriqragtmSGGEQ------Q 144
Cdd:COG0396 96 nFLRTALNARRGEElsAREFLKLLKEKMKELGLdedFLDRY--------VNEGF--------------SGGEKkrneilQ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 145 MLAIgralmsQPRLLLLDEPSLGL---ApiiIQQIFDTIEQLRKEGMTIFLVEQNaNQALKL--ADRGYVLENGHVVLED 219
Cdd:COG0396 154 MLLL------EPKLAILDETDSGLdidA---LRIVAEGVNKLRSPDRGILIITHY-QRILDYikPDFVHVLVDGRIVKSG 223
|
....*....
gi 754513351 220 TGEalLANE 228
Cdd:COG0396 224 GKE--LALE 230
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
5-232 |
8.35e-18 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 79.74 E-value: 8.35e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKimreavAI 84
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAER------GV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRMTVEENLAMGGFFA--DRSQYQERIQRVYDL--FPRLHERRIQRagtMSGGEQQMLAIGRALMSQPRLLL 160
Cdd:PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAgvEKMQRLEIAHQMLKKvgLEGAEKRYIWQ---LSGGQRQRVGIARALAANPQLLL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 161 LDEPSLGLAPIIIQQIFDTIEQL-RKEGMTIFLVEQNANQALKLA--------DRGYVLENGHVvleDTGEALLANEAVR 231
Cdd:PRK11248 152 LDEPFGALDAFTREQMQTLLLKLwQETGKQVLLITHDIEEAVFMAtelvllspGPGRVVERLPL---NFARRFVAGESSR 228
|
.
gi 754513351 232 S 232
Cdd:PRK11248 229 S 229
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
5-235 |
1.01e-17 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 79.67 E-value: 1.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDItDWQTAKIM--REAV 82
Cdd:PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL-DYSKRGLLalRQQV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 AIV---PEGRRVFSRMTVEENLAMGGFFADRSQYQERIQRVYDLFPRLHERRiQRAGTMSGGEQQMLAIGRALMSQPRLL 159
Cdd:PRK13638 80 ATVfqdPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-QPIQCLSHGQKKRVAIAGALVLQARYL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 160 LLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLE-DTGEALLANEAVRSAYL 235
Cdd:PRK13638 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHgAPGEVFACTEAMEQAGL 235
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
3-164 |
1.01e-17 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 81.26 E-value: 1.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 3 NVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFdGKDITdwqtakimreaV 82
Cdd:COG0488 313 KKVLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETVK-----------I 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 AIVPEGRRVF-SRMTVEENLAMGgffADRSQYQERIQRVYD-LFPRlhERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160
Cdd:COG0488 381 GYFDQHQEELdPDKTVLDELRDG---APGGTEQEVRGYLGRfLFSG--DDAFKPVGVLSGGEKARLALAKLLLSPPNVLL 455
|
....
gi 754513351 161 LDEP 164
Cdd:COG0488 456 LDEP 459
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
20-215 |
1.11e-17 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 81.31 E-value: 1.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 20 ALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVAIVPEGRR---VFSRMT 96
Cdd:PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRstgIYAYLD 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 97 VEENlamgGFFADRSQYQERI------------QRVYDLF----PRlHERRIqraGTMSGGEQQMLAIGRALMSQPRLLL 160
Cdd:PRK10982 343 IGFN----SLISNIRNYKNKVglldnsrmksdtQWVIDSMrvktPG-HRTQI---GSLSGGNQQKVIIGRWLLTQPEILM 414
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 754513351 161 LDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHV 215
Cdd:PRK10982 415 LDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
24-234 |
1.17e-17 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 79.11 E-value: 1.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 24 VSLHIRQGEIVTLIGANGAGKTTLLGTLCGdPRASTGKIVFDGKDITDWQTAKIMREavaivpegRRVFSR-------MT 96
Cdd:COG4138 15 ISAQVNAGELIHLIGPNGAGKSTLLARMAG-LLPGQGEILLNGRPLSDWSAAELARH--------RAYLSQqqsppfaMP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 97 VEENLAMGGffADRSQYQERIQRVYDLFPRLH-----ERRIQragTMSGGEQQ-------MLAIGRALMSQPRLLLLDEP 164
Cdd:COG4138 86 VFQYLALHQ--PAGASSEAVEQLLAQLAEALGledklSRPLT---QLSGGEWQrvrlaavLLQVWPTINPEGQLLLLDEP 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754513351 165 SLGLApiIIQQI-FDT-IEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVRSAY 234
Cdd:COG4138 161 MNSLD--VAQQAaLDRlLRELCQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVMTPENLSEVF 230
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
21-237 |
1.26e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 79.37 E-value: 1.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTL--CGDPRAS---TGKIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSrM 95
Cdd:PRK14271 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLnrMNDKVSGyrySGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-M 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 96 TVEENLAMG---GFFADRSQY----QERIQRVyDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
Cdd:PRK14271 116 SIMDNVLAGvraHKLVPRKEFrgvaQARLTEV-GLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSAL 194
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 754513351 169 APIIIQQIFDTIEQLrKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLAN--EAVRSAYLGG 237
Cdd:PRK14271 195 DPTTTEKIEEFIRSL-ADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSpkHAETARYVAG 264
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
6-231 |
2.86e-17 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 78.27 E-value: 2.86e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRvsahyGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKI--MREAVA 83
Cdd:PRK11831 13 VSFTR-----GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLytVRKRMS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 IVPEGRRVFSRMTVEENLAMGgfFADRSQYQERIQRVYDLFpRLHERRIQRAGTM-----SGGEQQMLAIGRALMSQPRL 158
Cdd:PRK11831 88 MLFQSGALFTDMNVFDNVAYP--LREHTQLPAPLLHSTVMM-KLEAVGLRGAAKLmpselSGGMARRAALARAIALEPDL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 754513351 159 LLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVR 231
Cdd:PRK11831 165 IMFDEPFVGQDPITMGVLVKLISELNSAlGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPR 238
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
8-233 |
3.26e-17 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 80.15 E-value: 3.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 8 FDRVSAHY---GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQtAKIMREAVAI 84
Cdd:TIGR00958 481 FQDVSFSYpnrPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYD-HHYLHRQVAL 559
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRmTVEENLAMGGFFADRSQYQERIQR--VYDL---FPRLHERRIQRAGT-MSGGEQQMLAIGRALMSQPRL 158
Cdd:TIGR00958 560 VGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAAKAanAHDFimeFPNGYDTEVGEKGSqLSGGQKQRIAIARALVRKPRV 638
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 159 LLLDEPSLGLApiiiQQIFDTIEQLRK-EGMTIFLVEQNANQALKlADRGYVLENGHVVLEDTGEALLANEAVRSA 233
Cdd:TIGR00958 639 LILDEATSALD----AECEQLLQESRSrASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQGCYKH 709
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1-208 |
4.17e-17 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 76.53 E-value: 4.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVM-LSFDrvsahYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAkiMR 79
Cdd:PRK13540 1 MLDVIeLDFD-----YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCT--YQ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFADRSQYQERIQRVYDL-----FPrlherriqrAGTMSGGEQQMLAIGRALMS 154
Cdd:PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLehlidYP---------CGLLSSGQKRQVALLRLWMS 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 754513351 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLveqNANQALKLADRGY 208
Cdd:PRK13540 145 KAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLL---TSHQDLPLNKADY 195
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
23-235 |
5.61e-17 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 79.44 E-value: 5.61e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 23 EVSLHIRQGEIVTLIGANGAGKTTLLGTLCG-DPRAStGKIVFDGKDITDWQTAKIMREAVAIVPEGRR---VFSRMTVE 98
Cdd:PRK09700 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFGvDKRAG-GEIRLNGKDISPRSPLDAVKKGMAYITESRRdngFFPNFSIA 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 99 ENLAMGgffadRSQYQERIQRVYDLFPRLHERRI----------------QRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162
Cdd:PRK09700 360 QNMAIS-----RSLKDGGYKGAMGLFHEVDEQRTaenqrellalkchsvnQNITELSGGNQQKVLISKWLCCCPEVIIFD 434
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754513351 163 EPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVRSAYL 235
Cdd:PRK09700 435 EPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMSEEEIMAWAL 507
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-226 |
5.92e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 77.85 E-value: 5.92e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYgkiqALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKImRE 80
Cdd:PRK13650 7 VKNLTFKYKEDQEKY----TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDI-RH 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVAIV---PEGRrvFSRMTVEENLAMG----GFfaDRSQYQERIQRVYDL--FPRLHERRIQRagtMSGGEQQMLAIGRA 151
Cdd:PRK13650 82 KIGMVfqnPDNQ--FVGATVEDDVAFGlenkGI--PHEEMKERVNEALELvgMQDFKEREPAR---LSGGQKQRVAIAGA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQaLKLADRGYVLENGHVVLEDTGEALLA 226
Cdd:PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDyQMTVISITHDLDE-VALSDRVLVMKNGQVESTSTPRELFS 229
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
16-227 |
7.46e-17 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 78.96 E-value: 7.46e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 16 GKIQALHEVSLHIRQGEIVTLIGANGAGKT----TLLGTLCGDPRASTGKIVFDGKDITDWqTAKIMReavAIvpEGRR- 90
Cdd:COG4172 21 GTVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLGL-SERELR---RI--RGNRi 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 91 --VFSR--------MTVEENLA--------MGGffadrsqyQERIQRVYDLfprLHERRIQRAGT--------MSGGEQQ 144
Cdd:COG4172 95 amIFQEpmtslnplHTIGKQIAevlrlhrgLSG--------AAARARALEL---LERVGIPDPERrldayphqLSGGQRQ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 145 --MLAIgrALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTG 221
Cdd:COG4172 164 rvMIAM--ALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRElGMALLLITHDLGVVRRFADRVAVMRQGEIVEQGPT 241
|
....*.
gi 754513351 222 EALLAN 227
Cdd:COG4172 242 AELFAA 247
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
5-216 |
7.62e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 77.47 E-value: 7.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYG-----KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITD---WQTAK 76
Cdd:PRK13643 1 MIKFEKVNYTYQpnspfASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSStskQKEIK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 77 IMREAVAIV---PEGRrVFSRmTVEENLAMG--GFFADRSQYQERIQRVYDLFPRLHERRIQRAGTMSGGEQQMLAIGRA 151
Cdd:PRK13643 81 PVRKKVGVVfqfPESQ-LFEE-TVLKDVAFGpqNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGI 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 754513351 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:PRK13643 159 LAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
5-235 |
1.18e-16 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 76.65 E-value: 1.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHY---------GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTA 75
Cdd:PRK10419 3 LLNVSGLSHHYahgglsgkhQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 76 --KIMREAVAIVPEGR--RVFSRMTVEENLA--MGGFFA-DRSQYQERIQ---RVYDLFPRLHERRIQRagtMSGGEQQM 145
Cdd:PRK10419 83 qrKAFRRDIQMVFQDSisAVNPRKTVREIIRepLRHLLSlDKAERLARASemlRAVDLDDSVLDKRPPQ---LSGGQLQR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFL-VEQNANQALKLADRGYVLENGHVVLEDT-GEA 223
Cdd:PRK10419 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLfITHDLRLVERFCQRVMVMDNGQIVETQPvGDK 239
|
250
....*....|....*.
gi 754513351 224 LL----ANEAVRSAYL 235
Cdd:PRK10419 240 LTfsspAGRVLQNAVL 255
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
6-220 |
1.52e-16 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 75.61 E-value: 1.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHY--GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKImREAVA 83
Cdd:cd03244 3 IEFKNVSLRYrpNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDL-RSRIS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 IVPEGRRVFSRmTVEENLAMGGFFADRSQYQ--ERIQ---RVYDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL 158
Cdd:cd03244 82 IIPQDPVLFSG-TIRSNLDPFGEYSDEELWQalERVGlkeFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 159 LLLDEPSLGLAPIIIQQIFDTIEQLRKeGMTIFLVeqnanqALKL-----ADRGYVLENGHVVLEDT 220
Cdd:cd03244 161 LVLDEATASVDPETDALIQKTIREAFK-DCTVLTI------AHRLdtiidSDRILVLDKGRVVEFDS 220
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
1-213 |
2.18e-16 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 74.81 E-value: 2.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGKIqaLHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKditdwqtakimre 80
Cdd:cd03250 3 VEDASFTWDSGEQETSFT--LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 aVAIVPEGRRVFSrMTVEENLAMGGFFadrsqYQERIQRV---------YDLFP-----RLHERRIqragTMSGGEQQML 146
Cdd:cd03250 68 -IAYVSQEPWIQN-GTIRENILFGKPF-----DEERYEKVikacalepdLEILPdgdltEIGEKGI----NLSGGQKQRI 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 754513351 147 AIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDT-IEQLRKEGMTIFLVEQNAnQALKLADRGYVLENG 213
Cdd:cd03250 137 SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENcILGLLLNNKTRILVTHQL-QLLPHADQIVVLDNG 203
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
2-215 |
2.19e-16 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 75.20 E-value: 2.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 2 ENVMLSFDRVSAHygkiQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTaKIMREA 81
Cdd:cd03248 15 QNVTFAYPTRPDT----LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEH-KYLHSK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 82 VAIVPEGRRVFSRmTVEENLAMGGFFADRSQYQERIQR--VYDLFPRL----HERRIQRAGTMSGGEQQMLAIGRALMSQ 155
Cdd:cd03248 90 VSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEAAQKahAHSFISELasgyDTEVGEKGSQLSGGQKQRVAIARALIRN 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754513351 156 PRLLLLDEPSLGLAPIIIQQifdtIEQLRKEGMT--IFLVEQNANQALKLADRGYVLENGHV 215
Cdd:cd03248 169 PQVLILDEATSALDAESEQQ----VQQALYDWPErrTVLVIAHRLSTVERADQILVLDGGRI 226
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
15-227 |
2.29e-16 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 76.66 E-value: 2.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 15 YGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKditdwqtakimreavaiVPEGRRvfsr 94
Cdd:COG4586 32 YREVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGY-----------------VPFKRR---- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 95 mtvEENLAMGGF-FADRSQ----------YqERIQRVYDLFPRLHERRI--------------QRAGTMSGGeQQMLA-I 148
Cdd:COG4586 91 ---KEFARRIGVvFGQRSQlwwdlpaidsF-RLLKAIYRIPDAEYKKRLdelvelldlgelldTPVRQLSLG-QRMRCeL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFL-------VEQnanqalkLADRGYVLENGHVVLEDT 220
Cdd:COG4586 166 AAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRErGTTILLtshdmddIEA-------LCDRVIVIDHGRIIYDGS 238
|
....*..
gi 754513351 221 GEALLAN 227
Cdd:COG4586 239 LEELKER 245
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
11-222 |
2.35e-16 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 77.54 E-value: 2.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 11 VSAHY-----GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKI-VFDGKDITDWQTAKIM-----R 79
Cdd:TIGR03269 285 VSKRYisvdrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVnVRVGDEWVDMTKPGPDgrgraK 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 80 EAVAIVPEGRRVFSRMTVEENL--AMGGFFADRSQyqeRIQRVYDL----FPRLHERRI--QRAGTMSGGEQQMLAIGRA 151
Cdd:TIGR03269 365 RYIGILHQEYDLYPHRTVLDNLteAIGLELPDELA---RMKAVITLkmvgFDEEKAEEIldKYPDELSEGERHRVALAQV 441
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754513351 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVleDTGE 222
Cdd:TIGR03269 442 LIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEmEQTFIIVSHDMDFVLDVCDRAALMRDGKIV--KIGD 511
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
18-218 |
3.37e-16 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 76.97 E-value: 3.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 18 IQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDIT-----DWQTA--KIMREAVAIVPEgrr 90
Cdd:PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTfngpkSSQEAgiGIIHQELNLIPQ--- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 91 vfsrMTVEENLAMGGFFAD---RSQYQERIQRVYDLFPRLHERRI--QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
Cdd:PRK10762 94 ----LTIAENIFLGREFVNrfgRIDWKKMYAEADKLLARLNLRFSsdKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPT 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 754513351 166 LGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218
Cdd:PRK10762 170 DALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE 222
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
5-164 |
4.37e-16 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 76.04 E-value: 4.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHY-GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKimREaVA 83
Cdd:PRK11650 3 GLKLQAVRKSYdGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPAD--RD-IA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 IVPEGRRVFSRMTVEENLAMG----GFfaDRSQYQERIQ---RVYDLFPRLHERRIQragtMSGGEQQMLAIGRALMSQP 156
Cdd:PRK11650 80 MVFQNYALYPHMSVRENMAYGlkirGM--PKAEIEERVAeaaRILELEPLLDRKPRE----LSGGQRQRVAMGRAIVREP 153
|
....*...
gi 754513351 157 RLLLLDEP 164
Cdd:PRK11650 154 AVFLFDEP 161
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
11-216 |
4.59e-16 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 76.81 E-value: 4.59e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 11 VSAHYGKiQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDpRASTGKIVFDGK-----DITDWqtakimREAVAIV 85
Cdd:PRK11174 357 ILSPDGK-TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF-LPYQGSLKINGIelrelDPESW------RKHLSWV 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 ------PEGrrvfsrmTVEENLAMGGFFADRSQYQERIQRVY--DLFPRLH---ERRIQ-RAGTMSGGEQQMLAIGRALM 153
Cdd:PRK11174 429 gqnpqlPHG-------TLRDNVLLGNPDASDEQLQQALENAWvsEFLPLLPqglDTPIGdQAAGLSVGQAQRLALARALL 501
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754513351 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQnaNQALKLADRGYVLENGHVV 216
Cdd:PRK11174 502 QPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQ--LEDLAQWDQIWVMQDGQIV 562
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
9-234 |
4.98e-16 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 75.02 E-value: 4.98e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 9 DRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREaVAIVPEG 88
Cdd:PRK10253 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR-IGLLAQN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 89 RRVFSRMTVEENLAMGG------FFADRSQYQERIQRVYDLFPRLHERRiQRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162
Cdd:PRK10253 90 ATTPGDITVQELVARGRyphqplFTRWRKEDEEAVTKAMQATGITHLAD-QSVDTLSGGQRQRAWIAMVLAQETAIMLLD 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 163 EPSLGLApiIIQQIfDTIEQL----RKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVRSAY 234
Cdd:PRK10253 169 EPTTWLD--ISHQI-DLLELLselnREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIY 241
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
17-227 |
5.62e-16 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 75.51 E-value: 5.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 17 KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwQTAKIMREAVAivpEGRRVFS--- 93
Cdd:PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG-MKDDEWRAVRS---DIQMIFQdpl 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 94 -----RMTVEENLA--MGGFFA--DRSQYQERIQRVYD---LFPRL-----HErriqragtMSGGEQQMLAIGRALMSQP 156
Cdd:PRK15079 109 aslnpRMTIGEIIAepLRTYHPklSRQEVKDRVKAMMLkvgLLPNLinrypHE--------FSGGQCQRIGIARALILEP 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754513351 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLAN 227
Cdd:PRK15079 181 KLIICDEPVSALDVSIQAQVVNLLQQLQREmGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN 252
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
21-234 |
5.66e-16 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 74.86 E-value: 5.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRAS--------TGKIVFDGKDITDWQTAKIMREAVAIVPEGRRVF 92
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGgaprgarvTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 93 SrMTVEENLAMGGF-FADRSQYQERIQRvydlfpRLHERRIQRAG----------TMSGGEQQMLAIGRAL--------- 152
Cdd:PRK13547 97 A-FSAREIVLLGRYpHARRAGALTHRDG------EIAWQALALAGatalvgrdvtTLSGGELARVQFARVLaqlwpphda 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVR 231
Cdd:PRK13547 170 AQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDwNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAHIA 249
|
...
gi 754513351 232 SAY 234
Cdd:PRK13547 250 RCY 252
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
24-216 |
7.12e-16 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 74.20 E-value: 7.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 24 VSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRAStGKIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSrMTVEENLAM 103
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS-GSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFA-MPVFQYLTL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 104 ggFFADRSQYQERIQRVYDLFPRLH-----ERRIQragTMSGGEQQ-------MLAIGRALMSQPRLLLLDEPSLGLApi 171
Cdd:PRK03695 93 --HQPDKTRTEAVASALNEVAEALGlddklGRSVN---QLSGGEWQrvrlaavVLQVWPDINPAGQLLLLDEPMNSLD-- 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 754513351 172 IIQQ-IFDT-IEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:PRK03695 166 VAQQaALDRlLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLL 212
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
20-213 |
8.11e-16 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 76.21 E-value: 8.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 20 ALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITdwQTAKIMREAVAIVPEGRRVFSRMTVEE 99
Cdd:TIGR01257 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL--TNISDVHQNMGYCPQFDAIDDLLTGRE 2031
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 100 NLAMggFFADRSQYQERIQRVYD-----LFPRLHERRIqrAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQ 174
Cdd:TIGR01257 2032 HLYL--YARLRGVPAEEIEKVANwsiqsLGLSLYADRL--AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARR 2107
|
170 180 190
....*....|....*....|....*....|....*....
gi 754513351 175 QIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENG 213
Cdd:TIGR01257 2108 MLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
19-163 |
1.31e-15 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 72.83 E-value: 1.31e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 19 QALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDItdwqtAKI----MREAVAIVPEGRRVFSR 94
Cdd:cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDI-----STIpledLRSSLTIIPQDPTLFSG 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 95 mTVEENLAMGGFFADRsqyqeriqrvyDLFPRLherRIQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDE 163
Cdd:cd03369 97 -TIRSNLDPFDEYSDE-----------EIYGAL---RVSEGGlNLSQGQRQLLCLARALLKRPRVLVLDE 151
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
14-215 |
1.88e-15 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 74.39 E-value: 1.88e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 14 HYGKIQALHEVSLHIRQGEIVTLIGANGAG--KTTLLGTLCGdPRASTGKIVFDgkdiTDWQTAKIMREAVAI---VPEG 88
Cdd:NF000106 22 HFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*G-PDAGRRPWRF*----TWCANRRALRRTIG*hrpVR*G 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 89 RRvfSRMTVEENLAMGGFFADRSQYQERiQRVYDLFPR--LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSL 166
Cdd:NF000106 97 RR--ESFSGRENLYMIGR*LDLSRKDAR-ARADELLERfsLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTT 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 754513351 167 GLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLA------DRGYVLENGHV 215
Cdd:NF000106 174 GLDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLAheltviDRGRVIADGKV 228
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
17-216 |
2.15e-15 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 71.91 E-value: 2.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 17 KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG--DPRAS-TGKIVFDGKDITdwQTAKIMREAVAIVPEGRRVFS 93
Cdd:cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANrtEGNVSvEGDIHYNGIPYK--EFAEKYPGEIIYVSEEDVHFP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 94 RMTVEENLAmggfFADRSQYQERIQRVydlfprlherriqragtmSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIII 173
Cdd:cd03233 97 TLTVRETLD----FALRCKGNEFVRGI------------------SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTA 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 754513351 174 QQIFDTIEQL-RKEGMTIFL-VEQNANQALKLADRGYVLENGHVV 216
Cdd:cd03233 155 LEILKCIRTMaDVLKTTTFVsLYQASDEIYDLFDKVLVLYEGRQI 199
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
21-227 |
2.33e-15 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 75.01 E-value: 2.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGD-PRASTGKIVfdgkditdwqtakiMREAVAIVPEGRRVFSrMTVEE 99
Cdd:PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGElSHAETSSVV--------------IRGSVAYVPQVSWIFN-ATVRE 697
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 100 NLAMGGFFaDRSQYQERI-----QRVYDLFPRLHERRI-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIII 173
Cdd:PLN03232 698 NILFGSDF-ESERYWRAIdvtalQHDLDLLPGRDLTEIgERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVA 776
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 754513351 174 QQIFDTIEQLRKEGMTIFLVeQNANQALKLADRGYVLENGHVVLEDTGEALLAN 227
Cdd:PLN03232 777 HQVFDSCMKDELKGKTRVLV-TNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
5-168 |
2.34e-15 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 71.83 E-value: 2.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMR---EA 81
Cdd:PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHylgHR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 82 VAIVPEgrrvfsrMTVEENLAmggFFAD-RSQYQERIQRV---YDLFPRLHerriQRAGTMSGGEQQMLAIGRALMSQPR 157
Cdd:PRK13539 82 NAMKPA-------LTVAENLE---FWAAfLGGEELDIAAAleaVGLAPLAH----LPFGYLSAGQKRRVALARLLVSNRP 147
|
170
....*....|.
gi 754513351 158 LLLLDEPSLGL 168
Cdd:PRK13539 148 IWILDEPTAAL 158
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
6-230 |
4.19e-15 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 73.90 E-value: 4.19e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHY-GK-IQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKiMREAVA 83
Cdd:PRK11176 342 IEFRNVTFTYpGKeVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLAS-LRNQVA 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 IVPEGRRVFSRmTVEENLAmggfFADRSQY-QERIQR------VYDLFPRLH---ERRIQRAGTM-SGGEQQMLAIGRAL 152
Cdd:PRK11176 421 LVSQNVHLFND-TIANNIA----YARTEQYsREQIEEaarmayAMDFINKMDnglDTVIGENGVLlSGGQRQRIAIARAL 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 153 MSQPRLLLLDEPSLGL---APIIIQQIFDTIEQLRKEgmtifLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEA 229
Cdd:PRK11176 496 LRDSPILILDEATSALdteSERAIQAALDELQKNRTS-----LVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNG 570
|
.
gi 754513351 230 V 230
Cdd:PRK11176 571 V 571
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
6-164 |
5.21e-15 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 70.85 E-value: 5.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITdwQTAKIMREAVAIV 85
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLA--EQRDEPHENILYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 PEGRRVFSRMTVEENLAmggFFADRSQYQERiqRVYDLFPRL----HERRIqrAGTMSGGEQQMLAIGRALMSQPRLLLL 161
Cdd:TIGR01189 79 GHLPGLKPELSALENLH---FWAAIHGGAQR--TIEDALAAVgltgFEDLP--AAQLSAGQQRRLALARLWLSRRPLWIL 151
|
...
gi 754513351 162 DEP 164
Cdd:TIGR01189 152 DEP 154
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
20-213 |
5.48e-15 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 72.22 E-value: 5.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 20 ALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKditdwQTAKIMREA-VAIVPEGRRV---FSRM 95
Cdd:PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQ-----PTRQALQKNlVAYVPQSEEVdwsFPVL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 96 tVEENLAMGGF----FADRSQYQERiQRVYDLFPR--LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLA 169
Cdd:PRK15056 97 -VEDVVMMGRYghmgWLRRAKKRDR-QIVTAALARvdMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVD 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 754513351 170 PIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLAD-----RGYVLENG 213
Cdd:PRK15056 175 VKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDytvmvKGTVLASG 223
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
6-226 |
7.74e-15 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 72.93 E-value: 7.74e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHY-GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG--DPraSTGKIVFDGKDITDWqTAKIMREAV 82
Cdd:COG5265 358 VRFENVSFGYdPERPILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRfyDV--TSGRILIDGQDIRDV-TQASLRAAI 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 AIVPEGRRVFSrMTVEENLAMGGFFADRSQYQERIQRVydlfpRLH---ERRIQRAGTM--------SGGEQQMLAIGRA 151
Cdd:COG5265 435 GIVPQDTVLFN-DTIAYNIAYGRPDASEEEVEAAARAA-----QIHdfiESLPDGYDTRvgerglklSGGEKQRVAIART 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLveqnanqALKL-----ADRGYVLENGHVVLEDTGEALLA 226
Cdd:COG5265 509 LLKNPPILIFDEATSALDSRTERAIQAALREVARGRTTLVI-------AHRLstivdADEILVLEAGRIVERGTHAELLA 581
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
6-226 |
9.13e-15 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 72.91 E-value: 9.13e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG--DPRASTGKIV----------------FDGK 67
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGmdQYEPTSGRIIyhvalcekcgyverpsKVGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 68 ------------DITDWQTAKIMREAV----AIVPEgrRVFS---RMTVEEN----LAMGGFFADRSqyqerIQRVYDLF 124
Cdd:TIGR03269 81 pcpvcggtlepeEVDFWNLSDKLRRRIrkriAIMLQ--RTFAlygDDTVLDNvleaLEEIGYEGKEA-----VGRAVDLI 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 125 PRLH-ERRIQR-AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL-RKEGMTIFLVEQNANQAL 201
Cdd:TIGR03269 154 EMVQlSHRITHiARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAvKASGISMVLTSHWPEVIE 233
|
250 260
....*....|....*....|....*
gi 754513351 202 KLADRGYVLENGHVVLEDTGEALLA 226
Cdd:TIGR03269 234 DLSDKAIWLENGEIKEEGTPDEVVA 258
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
2-193 |
1.51e-14 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 70.19 E-value: 1.51e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 2 ENVmLSFDRVSAHYG----KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDIT---DWQT 74
Cdd:PRK10584 4 ENI-VEVHHLKKSVGqgehELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHqmdEEAR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 75 AKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFADRSQYQERiQRVYDLFPR--LHERRIQRAGTMSGGEQQMLAIGRAL 152
Cdd:PRK10584 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSR-NGAKALLEQlgLGKRLDHLPAQLSGGEQQRVALARAF 161
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 754513351 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL-RKEGMTIFLV 193
Cdd:PRK10584 162 NGRPDVLFADEPTGNLDRQTGDKIADLLFSLnREHGTTLILV 203
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1-220 |
3.62e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 69.78 E-value: 3.62e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGKIQA--LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwQTAKIM 78
Cdd:PRK13648 3 DKNSIIVFKNVSFQYQSDASftLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITD-DNFEKL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 79 REAVAIV---PEGRRVFSrmTVEENLAMG--GFFADRSQYQERIQRVYDLFPRLhERRIQRAGTMSGGEQQMLAIGRALM 153
Cdd:PRK13648 82 RKHIGIVfqnPDNQFVGS--IVKYDVAFGleNHAVPYDEMHRRVSEALKQVDML-ERADYEPNALSGGQKQRVAIAGVLA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 754513351 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKlADRGYVLENGHVVLEDT 220
Cdd:PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEhNITIISITHDLSEAME-ADHVIVMNKGTVYKEGT 225
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
24-168 |
3.80e-14 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 68.67 E-value: 3.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 24 VSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKdiTDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAM 103
Cdd:cd03231 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG--PLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRF 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 754513351 104 GGFFADRSQYQERIQRVyDLfpRLHERRIqrAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
Cdd:cd03231 97 WHADHSDEQVEEALARV-GL--NGFEDRP--VAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
22-227 |
8.45e-14 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 68.57 E-value: 8.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 22 HEVSLHIRQGEIVTLIGANGAGKT----TLLGTLCGDPRASTGKIVFDGKDITDWQ-----TAKIM---REAVAIVpegr 89
Cdd:PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSltcaAALGILPAGVRQTAGRVLLDGKPVAPCAlrgrkIATIMqnpRSAFNPL---- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 90 RVFSRMTVEENLAMGGFFADRSQYQ-------ERIQRVYDLFPRlherriqragTMSGGEQQMLAIGRALMSQPRLLLLD 162
Cdd:PRK10418 96 HTMHTHARETCLALGKPADDATLTAaleavglENAARVLKLYPF----------EMSGGMLQRMMIALALLCEAPFIIAD 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 163 EPSLGLAPIIIQQIFDTIEQL-RKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLAN 227
Cdd:PRK10418 166 EPTTDLDVVAQARILDLLESIvQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1-226 |
2.06e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 67.81 E-value: 2.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSahygKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMRE 80
Cdd:PRK13642 7 VENLVFKYEKES----DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVAIVPEGRRVFSRMTVEENLAMgGFFADRSQYQERIQRVYD--LFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL 158
Cdd:PRK13642 83 IGMVFQNPDNQFVGATVEDDVAF-GMENQGIPREEMIKRVDEalLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 754513351 159 LLLDEPSLGLAPIIIQQIFDTIEQLR-KEGMTIFLVEQNANQALKlADRGYVLENGHVVLEDTGEALLA 226
Cdd:PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKeKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFA 229
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
21-228 |
2.34e-13 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 68.85 E-value: 2.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKImREAVAIVPEGRRVFSRmTVEEN 100
Cdd:PLN03232 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDL-RRVLSIIPQSPVLFSG-TVRFN 1329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 101 LAMGGFFADRSQYQ--ER--IQRVYDLFPRLHERRIQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQ 175
Cdd:PLN03232 1330 IDPFSEHNDADLWEalERahIKDVIDRNPFGLDAEVSEGGeNFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSL 1409
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 754513351 176 IFDTIEQLRKEgMTIFLVEQNANQALKlADRGYVLENGHVVLEDTGEALLANE 228
Cdd:PLN03232 1410 IQRTIREEFKS-CTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRD 1460
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
21-225 |
2.38e-13 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 67.57 E-value: 2.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCgDPRASTGKIVFDGkdiTDWQTAKIM--REAVAIVPEGRRVFSRmTVE 98
Cdd:cd03289 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDG---VSWNSVPLQkwRKAFGVIPQKVFIFSG-TFR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 99 ENLAMGGFFADRSQYQER----IQRVYDLFPRLHERRIQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIII 173
Cdd:cd03289 95 KNLDPYGKWSDEEIWKVAeevgLKSVIEQFPGQLDFVLVDGGcVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITY 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 754513351 174 QQIFDTIEQlRKEGMTIFLVEQNAnQALKLADRGYVLENGHVVLEDTGEALL 225
Cdd:cd03289 175 QVIRKTLKQ-AFADCTVILSEHRI-EAMLECQRFLVIEENKVRQYDSIQKLL 224
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
16-227 |
2.55e-13 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 68.01 E-value: 2.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 16 GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDP----RASTGKIVFDGKDITDW---QTAKIMREAVAIV--- 85
Cdd:COG4170 18 GRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITkdnwHVTADRFRWNGIDLLKLsprERRKIIGREIAMIfqe 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 PEG-----RRVFSRMtvEENL---AMGGFFADRsqYQERIQRVYDLFPRL----HERrIQRA--GTMSGGEQQMLAIGRA 151
Cdd:COG4170 98 PSScldpsAKIGDQL--IEAIpswTFKGKWWQR--FKWRKKRAIELLHRVgikdHKD-IMNSypHELTEGECQKVMIAMA 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRK-EGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLAN 227
Cdd:COG4170 173 IANQPRLLIADEPTNAMESTTQAQIFRLLARLNQlQGTSILLISHDLESISQWADTITVLYCGQTVESGPTEQILKS 249
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
19-226 |
3.15e-13 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 68.19 E-value: 3.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 19 QALHEVSLHIRQGEIVTLIGANGAGKT----TLLGTLCGDPRA-STGKIVFDGKDI--TDWQT---------AKIMREA- 81
Cdd:PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSvtalSILRLLPSPPVVyPSGDIRFHGESLlhASEQTlrgvrgnkiAMIFQEPm 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 82 VAIVPegrrvfsRMTVEENLA--------MGGFFA--------DRSQYQERIQRVYDlFPrlHErriqragtMSGGEQQM 145
Cdd:PRK15134 103 VSLNP-------LHTLEKQLYevlslhrgMRREAArgeilnclDRVGIRQAAKRLTD-YP--HQ--------LSGGERQR 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEAL 224
Cdd:PRK15134 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQElNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL 244
|
..
gi 754513351 225 LA 226
Cdd:PRK15134 245 FS 246
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
21-182 |
3.77e-13 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 68.40 E-value: 3.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCgdPRAST-GKIVFDGkdiTDWQTAKIM--REAVAIVPEGRRVFSRmTV 97
Cdd:TIGR01271 1235 LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL--RLLSTeGEIQIDG---VSWNSVTLQtwRKAFGVIPQKVFIFSG-TF 1308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 98 EENLAMGGFFADRSQYQER----IQRVYDLFPRLHERRIQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPII 172
Cdd:TIGR01271 1309 RKNLDPYEQWSDEEIWKVAeevgLKSVIEQFPDKLDFVLVDGGyVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT 1388
|
170
....*....|
gi 754513351 173 IQQIFDTIEQ 182
Cdd:TIGR01271 1389 LQIIRKTLKQ 1398
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
17-230 |
7.79e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 66.41 E-value: 7.79e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 17 KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTG-----------KIVFDGKDITDWQ----TAKIMREA 81
Cdd:PRK13631 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGtiqvgdiyigdKKNNHELITNPYSkkikNFKELRRR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 82 VAIV---PEgRRVFsRMTVEENLAMGGFFADRSQYQERIQRVYDLFPR-LHERRIQRAG-TMSGGEQQMLAIGRALMSQP 156
Cdd:PRK13631 118 VSMVfqfPE-YQLF-KDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMgLDDSYLERSPfGLSGGQKRRVAIAGILAIQP 195
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 754513351 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAV 230
Cdd:PRK13631 196 EILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHI 269
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
2-165 |
9.58e-13 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 66.76 E-value: 9.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 2 ENVMLSFDRVSAHYGKIQaLHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKditdwqtakimrea 81
Cdd:PRK13409 337 RETLVEYPDLTKKLGDFS-LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELK-------------- 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 82 VAIVPEGRRVFSRMTVEENLAMGGFFADRSQYQERIQRVYDLfPRLHERRIqraGTMSGGEQQMLAIGRALMSQPRLLLL 161
Cdd:PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQL-ERLLDKNV---KDLSGGELQRVAIAACLSRDADLYLL 477
|
....
gi 754513351 162 DEPS 165
Cdd:PRK13409 478 DEPS 481
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
20-226 |
1.45e-12 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 66.27 E-value: 1.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 20 ALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKiMREAVAIVPEGRRVFSRmTVEE 99
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS-WRSRLAVVSQTPFLFSD-TVAN 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 100 NLAMGGFFADRSQYQE--RIQRVYDLFPRL---HERRIQRAGTM-SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIII 173
Cdd:PRK10789 408 NIALGRPDATQQEIEHvaRLASVHDDILRLpqgYDTEVGERGVMlSGGQKQRISIARALLLNAEILILDDALSAVDGRTE 487
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 754513351 174 QQIFDTIEQLRkEGMTIfLVEQNANQALKLADRGYVLENGHVVLEDTGEALLA 226
Cdd:PRK10789 488 HQILHNLRQWG-EGRTV-IISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
6-226 |
1.92e-12 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 65.89 E-value: 1.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQ-ALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAkIMREAVAI 84
Cdd:PRK10790 341 IDIDNVSFAYRDDNlVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHS-VLRQGVAM 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRmTVEENLAMGGFFADRSQYQ--ERIQR---VYDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159
Cdd:PRK10790 420 VQQDPVVLAD-TFLANVTLGRDISEEQVWQalETVQLaelARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQIL 498
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 160 LLDEPSLGLAPIIIQQIFDTIEQLRKEgmTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLA 226
Cdd:PRK10790 499 ILDEATANIDSGTEQAIQQALAAVREH--TTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLA 563
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
6-165 |
2.86e-12 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 62.08 E-value: 2.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDgkditdwQTAKImreavaiv 85
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG-------STVKI-------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 pegrrvfsrmtveenlamgGFFAdrsQyqeriqrvydlfprlherriqragtMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
Cdd:cd03221 66 -------------------GYFE---Q-------------------------LSGGEKMRLALAKLLLENPNLLLLDEPT 98
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
16-226 |
2.90e-12 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 64.82 E-value: 2.90e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 16 GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG----DPRASTGKIVFDGKD---ITDWQTAKIMREAVAIV--- 85
Cdd:PRK15093 18 GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvtkdNWRVTADRMRFDDIDllrLSPRERRKLVGHNVSMIfqe 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 PEgrrvfSRMTVEENL------AMGGFFADRSQYQE---RIQRVYDLFPRL---HERRIQRA--GTMSGGEQQMLAIGRA 151
Cdd:PRK15093 98 PQ-----SCLDPSERVgrqlmqNIPGWTYKGRWWQRfgwRKRRAIELLHRVgikDHKDAMRSfpYELTEGECQKVMIAIA 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRK-EGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLA 226
Cdd:PRK15093 173 LANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQnNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVT 248
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
21-227 |
3.64e-12 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 65.53 E-value: 3.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVfdgkditdwqtakIMREAVAIVPEGRRVFSrMTVEEN 100
Cdd:PLN03130 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASV-------------VIRGTVAYVPQVSWIFN-ATVRDN 698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 101 LAMGGFFaDRSQYQERI-----QRVYDLFPRLHERRI-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQ 174
Cdd:PLN03130 699 ILFGSPF-DPERYERAIdvtalQHDLDLLPGGDLTEIgERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGR 777
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 175 QIFDTI--EQLRKEgmTIFLVeqnANQA--LKLADRGYVLENGHVVLEDTGEALLAN 227
Cdd:PLN03130 778 QVFDKCikDELRGK--TRVLV---TNQLhfLSQVDRIILVHEGMIKEEGTYEELSNN 829
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
21-228 |
4.07e-12 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 65.53 E-value: 4.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKiMREAVAIVPEGRRVFSRmTVEEN 100
Cdd:PLN03130 1255 LHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMD-LRKVLGIIPQAPVLFSG-TVRFN 1332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 101 LAMGGFFAD--------RSQYQERIQRVydlfPRLHERRIQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL--- 168
Cdd:PLN03130 1333 LDPFNEHNDadlwesleRAHLKDVIRRN----SLGLDAEVSEAGeNFSVGQRQLLSLARALLRRSKILVLDEATAAVdvr 1408
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 754513351 169 APIIIQQifdTI-EQLRKEGMTIflVEQNANQALKlADRGYVLENGHVVLEDTGEALLANE 228
Cdd:PLN03130 1409 TDALIQK---TIrEEFKSCTMLI--IAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSNE 1463
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
21-163 |
4.41e-12 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 64.83 E-value: 4.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDgkditdwQTAKIM-------------REAVAiVPE 87
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARP-------AGARVLflpqrpylplgtlREALL-YPA 450
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 754513351 88 GRRVFSRMTVEENLamggffadrsqyqeriQRVY--DLFPRLHERRiQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
Cdd:COG4178 451 TAEAFSDAELREAL----------------EAVGlgHLAERLDEEA-DWDQVLSLGEQQRLAFARLLLHKPDWLFLDE 511
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
5-226 |
1.04e-11 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 63.88 E-value: 1.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDIT-------------D 71
Cdd:PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITrlsfeqlqklvsdE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 72 WQtakimREAVAIVPEGRRVFSRMTVEenlamggFFADRSQYQERIQRVYDLF--PRLHERRIQRagtMSGGEQQMLAIG 149
Cdd:PRK10938 83 WQ-----RNNTDMLSPGEDDTGRTTAE-------IIQDEVKDPARCEQLAQQFgiTALLDRRFKY---LSTGETRKTLLC 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLA 226
Cdd:PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
133-214 |
1.13e-11 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 61.18 E-value: 1.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 133 QRAGTMSGGEQQMLAIGRALMSQPR--LLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNaNQALKLADrgYVL 210
Cdd:cd03238 83 QKLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN-LDVLSSAD--WII 159
|
....
gi 754513351 211 ENGH 214
Cdd:cd03238 160 DFGP 163
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
22-164 |
1.37e-11 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 61.74 E-value: 1.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 22 HEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDwqtakiMRE-----------AVAIVPEgrr 90
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRR------QRDeyhqdllylghQPGIKTE--- 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 91 vfsrMTVEENLAmggFFADRSQYQERiQRVYDLFPR--LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP 164
Cdd:PRK13538 89 ----LTALENLR---FYQRLHGPGDD-EALWEALAQvgLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
21-207 |
1.40e-11 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 60.63 E-value: 1.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIvfdgkditdwqtakimreavaIVPEGRRVFsrmtveen 100
Cdd:cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI---------------------GMPEGEDLL-------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 101 lamggFFAdrsqyqeriQRVYdlFPRLHERRI-----QRagTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQ 175
Cdd:cd03223 68 -----FLP---------QRPY--LPLGTLREQliypwDD--VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDR 129
|
170 180 190
....*....|....*....|....*....|....*...
gi 754513351 176 IFdtiEQLRKEGMTIFLV------EQNANQALKLADRG 207
Cdd:cd03223 130 LY---QLLKELGITVISVghrpslWKFHDRVLDLDGEG 164
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
19-223 |
3.45e-11 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 62.11 E-value: 3.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 19 QALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDP--RASTGKIVFDGKDITDWQTAKIMREAVAIVPEGRRVF---- 92
Cdd:NF040905 274 KVVDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFGRSygRNISGTVFKDGKEVDVSTVSDAIDAGLAYVTEDRKGYglnl 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 93 ----SRMTVEENL---AMGGFFADRSQYQ--ERIQRvydlfpRLherRI------QRAGTMSGGEQQMLAIGRALMSQPR 157
Cdd:NF040905 354 iddiKRNITLANLgkvSRRGVIDENEEIKvaEEYRK------KM---NIktpsvfQKVGNLSGGNQQKVVLSKWLFTDPD 424
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 158 LLLLDEPSLGL---APIIIQQIfdtIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLE-DTGEA 223
Cdd:NF040905 425 VLILDEPTRGIdvgAKYEIYTI---INELAAEGKGVIVISSELPELLGMCDRIYVMNEGRITGElPREEA 491
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
6-213 |
3.49e-11 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 61.41 E-value: 3.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIqaLHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREavaiv 85
Cdd:cd03291 40 LFFSNLCLVGAPV--LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPG----- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 86 pegrrvfsrmTVEENLAMGGFFaDRSQYQERI---QRVYDL--FPRLHERRIQRAG-TMSGGEQQMLAIGRALMSQPRLL 159
Cdd:cd03291 113 ----------TIKENIIFGVSY-DEYRYKSVVkacQLEEDItkFPEKDNTVLGEGGiTLSGGQRARISLARAVYKDADLY 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 754513351 160 LLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQaLKLADRGYVLENG 213
Cdd:cd03291 182 LLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEH-LKKADKILILHEG 234
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
1-165 |
3.66e-11 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 62.11 E-value: 3.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGkiqalhEVSLH-----IRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKditdwqta 75
Cdd:COG1245 337 EEETLVEYPDLTKSYG------GFSLEveggeIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDEDLK-------- 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 76 kimreaVAIVPEGRRVFSRMTVEENL--AMGGFFaDRSQYQERIQRVYDLfPRLHERRIqraGTMSGGEQQMLAIGRALM 153
Cdd:COG1245 403 ------ISYKPQYISPDYDGTVEEFLrsANTDDF-GSSYYKTEIIKPLGL-EKLLDKNV---KDLSGGELQRVAIAACLS 471
|
170
....*....|..
gi 754513351 154 SQPRLLLLDEPS 165
Cdd:COG1245 472 RDADLYLLDEPS 483
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
8-186 |
5.42e-11 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 61.64 E-value: 5.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 8 FDRVSAHYgkiQALHEVSLHIRQGEIVTLIGANGAGKTT----LLGTLcgdprASTGKIVFDGKDITDWQTAKIM--REA 81
Cdd:PRK15134 292 LKRTVDHN---VVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLI-----NSQGEIWFDGQPLHNLNRRQLLpvRHR 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 82 VAIV---PEGR---RVFSRMTVEENLAMGGFFADRSQYQERIQRVYDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155
Cdd:PRK15134 364 IQVVfqdPNSSlnpRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILK 443
|
170 180 190
....*....|....*....|....*....|.
gi 754513351 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE 186
Cdd:PRK15134 444 PSLIILDEPTSSLDKTVQAQILALLKSLQQK 474
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
18-164 |
8.88e-11 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 60.75 E-value: 8.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 18 IQALHEVSLHIRQGEIVTLIGANGAGKTTL--LGTLCGDPraSTGKIVFDGKDIT--DWQTAKIMREAVAIV---PEG-- 88
Cdd:PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLarLLTMIETP--TGGELYYQGQDLLkaDPEAQKLLRQKIQIVfqnPYGsl 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 89 ---RRVFSrmTVEENLAMGgffADRSQyQERIQRVYDLFPR--LHERRIQRAGTM-SGGEQQMLAIGRALMSQPRLLLLD 162
Cdd:PRK11308 106 nprKKVGQ--ILEEPLLIN---TSLSA-AERREKALAMMAKvgLRPEHYDRYPHMfSGGQRQRIAIARALMLDPDVVVAD 179
|
..
gi 754513351 163 EP 164
Cdd:PRK11308 180 EP 181
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
5-234 |
1.00e-10 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 60.53 E-value: 1.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGK----IQALHEVSLHIRQGEIVTLIGANGAGKT----TLLGTLCGDPRASTGKIVFDGKD---ITDWQ 73
Cdd:PRK11022 3 LLNVDKLSVHFGDesapFRAVDRISYSVKQGEVVGIVGESGSGKSvsslAIMGLIDYPGRVMAEKLEFNGQDlqrISEKE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 74 TAKIMREAVAIVPE------------GRRVFSRMTVEEnlamGGffadrsQYQERIQRVYDLF-----PRLHERRIQRAG 136
Cdd:PRK11022 83 RRNLVGAEVAMIFQdpmtslnpcytvGFQIMEAIKVHQ----GG------NKKTRRQRAIDLLnqvgiPDPASRLDVYPH 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 137 TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL-RKEGMTIFLVEQNANQALKLADRGYVLENGHV 215
Cdd:PRK11022 153 QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELqQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232
|
250
....*....|....*....
gi 754513351 216 VleDTGEALLANEAVRSAY 234
Cdd:PRK11022 233 V--ETGKAHDIFRAPRHPY 249
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
3-163 |
1.90e-10 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 58.57 E-value: 1.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 3 NVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWqTAKIMREAV 82
Cdd:PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTL-KPEIYRQQV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 AIVPEGRRVFSRmTVEENLAMGGFFADRSQYQERIQRVYDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162
Cdd:PRK10247 84 SYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLD 162
|
.
gi 754513351 163 E 163
Cdd:PRK10247 163 E 163
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-234 |
3.23e-10 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 58.50 E-value: 3.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRAS--TGKIVFDGKDITDwqtakim 78
Cdd:CHL00131 3 KNKPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKilEGDILFKGESILD------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 79 reavaIVPEGRrvfSRMTV--------------EENLAMGGFFADRSQYQ--------------ERIQRVyDLFPRLHER 130
Cdd:CHL00131 76 -----LEPEER---AHLGIflafqypieipgvsNADFLRLAYNSKRKFQGlpeldplefleiinEKLKLV-GMDPSFLSR 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 131 RIQRAgtMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVE--QNANQALKlADRGY 208
Cdd:CHL00131 147 NVNEG--FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILIThyQRLLDYIK-PDYVH 223
|
250 260
....*....|....*....|....*.
gi 754513351 209 VLENGHVVLedTGEALLANEAVRSAY 234
Cdd:CHL00131 224 VMQNGKIIK--TGDAELAKELEKKGY 247
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
134-237 |
3.71e-10 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 59.26 E-value: 3.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 134 RAGTMSGGEQQMLA----IGRALMSQprLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNaNQALKLADR--- 206
Cdd:TIGR00630 485 AAGTLSGGEAQRIRlatqIGSGLTGV--LYVLDEPSIGLHQRDNRRLINTLKRLRDLGNTLIVVEHD-EDTIRAADYvid 561
|
90 100 110
....*....|....*....|....*....|....*
gi 754513351 207 ---GYVLENGHVVLEDTGEALLAN-EAVRSAYLGG 237
Cdd:TIGR00630 562 igpGAGEHGGEVVASGTPEEILANpDSLTGQYLSG 596
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
58-190 |
3.94e-10 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 59.27 E-value: 3.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 58 STGKIVFDGKDITDWQTaKIMREAVAIVPEGRRVFSrMTVEENLAMGGFFADRSQYQE-----RIQRVYDLFPRLHERRI 132
Cdd:PTZ00265 1275 NSGKILLDGVDICDYNL-KDLRNLFSIVSQEPMLFN-MSIYENIKFGKEDATREDVKRackfaAIDEFIESLPNKYDTNV 1352
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754513351 133 QRAG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIEQLRKEGMTI 190
Cdd:PTZ00265 1353 GPYGkSLSGGQKQRIAIARALLREPKILLLDEATSSLdsnsEKLIEKTIVDIKDKADKTIITI 1415
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
18-213 |
3.96e-10 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 57.73 E-value: 3.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 18 IQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIM---REAVAIVPEGRRVFSr 94
Cdd:cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRsrnRYSVAYAAQKPWLLN- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 95 MTVEENLAMGGFFaDRSQYQERI-----QRVYDLFPRLHERRI-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP---- 164
Cdd:cd03290 93 ATVEENITFGSPF-NKQRYKAVTdacslQPDIDLLPFGDQTEIgERGINLSGGQRQRICVARALYQNTNIVFLDDPfsal 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 754513351 165 SLGLAPIIIQQifDTIEQLRKEGMTIFLVEQNAnQALKLADRGYVLENG 213
Cdd:cd03290 172 DIHLSDHLMQE--GILKFLQDDKRTLVLVTHKL-QYLPHADWIIAMKDG 217
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
137-235 |
6.70e-10 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 58.69 E-value: 6.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 137 TMSGGEQQMLAIGRALMSQPR--LLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNaNQALKLADR------GY 208
Cdd:PRK00635 476 TLSGGEQERTALAKHLGAELIgiTYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHD-EQMISLADRiidigpGA 554
|
90 100
....*....|....*....|....*...
gi 754513351 209 VLENGHVVLEDTGEALLAN-EAVRSAYL 235
Cdd:PRK00635 555 GIFGGEVLFNGSPREFLAKsDSLTAKYL 582
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
16-213 |
7.28e-10 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 56.48 E-value: 7.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 16 GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRAS--TGKIVFDGKDITdwqtaKIMREAVAIVPEGRRVFS 93
Cdd:cd03232 18 GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGviTGEILINGRPLD-----KNFQRSTGYVEQQDVHSP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 94 RMTVEENLAMGGFFADRSQYQERIqrvydlfprlherriqragtmsggeqqmLAIGRALMSQPRLLLLDEPSLGL----A 169
Cdd:cd03232 93 NLTVREALRFSALLRGLSVEQRKR----------------------------LTIGVELAAKPSILFLDEPTSGLdsqaA 144
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 754513351 170 PIIIQqifdTIEQLRKEGMTIFL-VEQNANQALKLADRGYVLENG 213
Cdd:cd03232 145 YNIVR----FLKKLADSGQAILCtIHQPSASIFEKFDRLLLLKRG 185
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
21-214 |
1.39e-09 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 58.00 E-value: 1.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREavaivpegrrvfsrmTVEEN 100
Cdd:TIGR01271 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPG---------------TIKDN 506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 101 LAMGGFFaDRSQYQERI---QRVYDL--FPRLHERRIQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQ 174
Cdd:TIGR01271 507 IIFGLSY-DEYRYTSVIkacQLEEDIalFPEKDKTVLGEGGiTLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK 585
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 754513351 175 QIFDTIEQLRKEGMTIFLVEQNAnQALKLADRGYVLENGH 214
Cdd:TIGR01271 586 EIFESCLCKLMSNKTRILVTSKL-EHLKKADKILLLHEGV 624
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
26-183 |
1.50e-09 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 57.65 E-value: 1.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 26 LHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDgkditdwQTAKIMR------------------EAVAIVPE 87
Cdd:PRK11147 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYE-------QDLIVARlqqdpprnvegtvydfvaEGIEEQAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 88 GRRVFSRMTV-------EENLamggffADRSQYQERIQ---------RVYDLFPRLHERRIQRAGTMSGGEQQMLAIGRA 151
Cdd:PRK11147 97 YLKRYHDISHlvetdpsEKNL------NELAKLQEQLDhhnlwqlenRINEVLAQLGLDPDAALSSLSGGWLRKAALGRA 170
|
170 180 190
....*....|....*....|....*....|..
gi 754513351 152 LMSQPRLLLLDEPSLGLApiiiqqiFDTIEQL 183
Cdd:PRK11147 171 LVSNPDVLLLDEPTNHLD-------IETIEWL 195
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
6-231 |
1.82e-09 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 57.29 E-value: 1.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQ-ALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKiMREAVAI 84
Cdd:PRK10522 323 LELRNVTFAYQDNGfSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPED-YRKLFSA 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 VPEGRRVFSRMtveenLAMGGFFADRSQYQ---ERIQRVYDLfpRLHERRIQRAgTMSGGEQQMLAIGRALMSQPRLLLL 161
Cdd:PRK10522 402 VFTDFHLFDQL-----LGPEGKPANPALVEkwlERLKMAHKL--ELEDGRISNL-KLSKGQKKRLALLLALAEERDILLL 473
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 754513351 162 DEPSLGLAPiIIQQIF--DTIEQLRKEGMTIFLVEQNaNQALKLADRGYVLENGhVVLEDTGEA--LLANEAVR 231
Cdd:PRK10522 474 DEWAADQDP-HFRREFyqVLLPLLQEMGKTIFAISHD-DHYFIHADRLLEMRNG-QLSELTGEErdAASRDAVA 544
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
24-71 |
1.89e-09 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 57.12 E-value: 1.89e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 754513351 24 VSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITD 71
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTA 398
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
28-211 |
2.22e-09 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 55.88 E-value: 2.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 28 IRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDitdwqtakimreaVAIVPEGRRVFSRMTVEENLA--MGG 105
Cdd:cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT-------------VSYKPQYIKADYEGTVRDLLSsiTKD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 106 FFADrSQYQE------RIQRVYDlfprlherriQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL-------APII 172
Cdd:cd03237 89 FYTH-PYFKTeiakplQIEQILD----------REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLdveqrlmASKV 157
|
170 180 190
....*....|....*....|....*....|....*....
gi 754513351 173 IQQIfdtIEQLRKegmTIFLVEQNANQALKLADRGYVLE 211
Cdd:cd03237 158 IRRF---AENNEK---TAFVVEHDIIMIDYLADRLIVFE 190
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
31-226 |
2.29e-09 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 56.81 E-value: 2.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 31 GEIVTLIGANGAGKTTLLGTLCGDPRAS--TGKIVFDGKDITDwqtaKIMREaVAIVPEGRRVFSRMTVEENLAMGGFF- 107
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAGRIQGNnfTGTILANNRKPTK----QILKR-TGFVTQDDILYPHLTVRETLVFCSLLr 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 108 -ADRSQYQERIqrvydlfpRLHERRIQRAGT---------------MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPI 171
Cdd:PLN03211 169 lPKSLTKQEKI--------LVAESVISELGLtkcentiignsfirgISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT 240
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 172 IIQQIFDTIEQLRKEGMTIFL-VEQNANQALKLADRGYVLENGHVVLEDTGEALLA 226
Cdd:PLN03211 241 AAYRLVLTLGSLAQKGKTIVTsMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
18-216 |
4.07e-09 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 55.57 E-value: 4.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 18 IQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDIT----DWQTAKImreavaivpegrrvfs 93
Cdd:PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHfgdySYRSQRI---------------- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 94 RMtveenlamggFFADRSQY---QERIQRVYDLFPRLH--------ERRIQRAGTMSG---------------GEQQMLA 147
Cdd:PRK15112 90 RM----------IFQDPSTSlnpRQRISQILDFPLRLNtdlepeqrEKQIIETLRQVGllpdhasyyphmlapGQKQRLG 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 148 IGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLR-KEGMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:PRK15112 160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQeKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV 229
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
7-164 |
7.75e-09 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 55.33 E-value: 7.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 7 SFDRVS-AHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG--------------------------DPRAST 59
Cdd:TIGR03719 6 TMNRVSkVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGvdkdfngearpqpgikvgylpqepqlDPTKTV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 60 GKIVFDGkditdwqtakiMREAVAIVPEGRRVFSRMTvEENLAMGGFFADRSQYQERIQRV--YDLfprlhERRIQRA-- 135
Cdd:TIGR03719 86 RENVEEG-----------VAEIKDALDRFNEISAKYA-EPDADFDKLAAEQAELQEIIDAAdaWDL-----DSQLEIAmd 148
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 754513351 136 -----------GTMSGGEQQMLAIGRALMSQPRLLLLDEP 164
Cdd:TIGR03719 149 alrcppwdadvTKLSGGERRRVALCRLLLSKPDMLLLDEP 188
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
134-206 |
1.08e-08 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 53.80 E-value: 1.08e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754513351 134 RAGTMSGGEQQMLA----IGRALMSQprLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNaNQALKLADR 206
Cdd:cd03270 134 SAPTLSGGEAQRIRlatqIGSGLTGV--LYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHD-EDTIRAADH 207
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
14-215 |
1.41e-08 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 54.51 E-value: 1.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 14 HYgkiqALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGkditdwqtakimreAVAIVPEGRRVFS 93
Cdd:PRK13545 37 HY----ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG--------------SAALIAISSGLNG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 94 RMTVEENLAMGGFFA--DRSQYQERIQRVYDlFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP-SLGlAP 170
Cdd:PRK13545 99 QLTGIENIELKGLMMglTKEKIKEIIPEIIE-FADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEAlSVG-DQ 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 754513351 171 IIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHV 215
Cdd:PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQV 221
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
15-192 |
2.38e-08 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 53.87 E-value: 2.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 15 YGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGD-PRASTGKIVFDGKDITDWQTAKIMREAVAIVPEGRRVFS 93
Cdd:PRK10938 270 YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDhPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDY 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 94 RM-TVEENLAMGGFFADRSQYQ---ERIQRVYD-LFPRLH-ERRIQRAG--TMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
Cdd:PRK10938 350 RVsTSVRNVILSGFFDSIGIYQavsDRQQKLAQqWLDILGiDKRTADAPfhSLSWGQQRLALIVRALVKHPTLLILDEPL 429
|
170 180
....*....|....*....|....*..
gi 754513351 166 LGLAPIIIQQIFDTIEQLRKEGMTIFL 192
Cdd:PRK10938 430 QGLDPLNRQLVRRFVDVLISEGETQLL 456
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
21-163 |
2.49e-08 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 54.18 E-value: 2.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDItdwqtAKI----MREAVAIVPEGRRVFSRmT 96
Cdd:TIGR00957 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNI-----AKIglhdLRFKITIIPQDPVLFSG-S 1375
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754513351 97 VEENLAMGGFFADRSQYQ----ERIQRVYDLFPRLHERRIQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDE 163
Cdd:TIGR00957 1376 LRMNLDPFSQYSDEEVWWalelAHLKTFVSALPDKLDHECAEGGeNLSVGQRQLVCLARALLRKTKILVLDE 1447
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
21-180 |
1.33e-07 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 51.87 E-value: 1.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGkditdwqtakimreAVAIVPEGRRVfSRMTVEEN 100
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--------------SVAYVPQQAWI-QNDSLREN 718
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 101 LAMGGFFADRsQYQERIQRV-----YDLFPRLHERRIQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQ 174
Cdd:TIGR00957 719 ILFGKALNEK-YYQQVLEACallpdLEILPSGDRTEIGEKGvNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 797
|
....*.
gi 754513351 175 QIFDTI 180
Cdd:TIGR00957 798 HIFEHV 803
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
20-163 |
1.77e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 49.87 E-value: 1.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 20 ALHEVSLHIRQGEI-----------VTLI-GANGAGKTTLLGTLCGDPRASTGKIVFdgKDItdwQTAKIMREAVAIVPE 87
Cdd:PRK13541 3 SLHQLQFNIEQKNLfdlsitflpsaITYIkGANGCGKSSLLRMIAGIMQPSSGNIYY--KNC---NINNIAKPYCTYIGH 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 88 GRRVFSRMTVEENLAMGGFFADRSqyqERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
Cdd:PRK13541 78 NLGLKLEMTVFENLKFWSEIYNSA---ETLYAAIHYF-KLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDE 149
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
95-213 |
2.48e-07 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 50.78 E-value: 2.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 95 MTVEENLAmggFFADRSQYQERIQRVYDL---FPRLHerriQRAGTMSGGEQQMLAIGRALMSQ---PRLLLLDEPSLGL 168
Cdd:TIGR00630 791 MTVEEAYE---FFEAVPSISRKLQTLCDVglgYIRLG----QPATTLSGGEAQRIKLAKELSKRstgRTLYILDEPTTGL 863
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 754513351 169 APIIIQQIFDTIEQLRKEGMTIFLVEQNANqALKLADrgYVLENG 213
Cdd:TIGR00630 864 HFDDIKKLLEVLQRLVDKGNTVVVIEHNLD-VIKTAD--YIIDLG 905
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
106-213 |
3.95e-07 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 50.60 E-value: 3.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 106 FFADRSQYQERIQRVYDLfpRLHERRIQRA-GTMSGGEQQMLAIGRALMS---QPRLLLLDEPSLGLAPIIIQQIFDTIE 181
Cdd:PRK00635 779 FFLDEPSIHEKIHALCSL--GLDYLPLGRPlSSLSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIKALIYVLQ 856
|
90 100 110
....*....|....*....|....*....|..
gi 754513351 182 QLRKEGMTIFLVEQNANqALKLADrgYVLENG 213
Cdd:PRK00635 857 SLTHQGHTVVIIEHNMH-VVKVAD--YVLELG 885
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
24-192 |
6.34e-07 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 49.74 E-value: 6.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 24 VSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKI-VF----DGKDITdwqtakiMReavaivpegRRV------F 92
Cdd:NF033858 285 VSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAwLFgqpvDAGDIA-------TR---------RRVgymsqaF 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 93 S---RMTVEENLAMGG--FFADRSQYQERIQRVYDLFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLG 167
Cdd:NF033858 349 SlygELTVRQNLELHArlFHLPAAEIAARVAEMLERF-DLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSG 427
|
170 180
....*....|....*....|....*.
gi 754513351 168 LAPIIIQQIFDTIEQL-RKEGMTIFL 192
Cdd:NF033858 428 VDPVARDMFWRLLIELsREDGVTIFI 453
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
63-213 |
6.65e-07 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 48.76 E-value: 6.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 63 VFDgkDITDW-----QTAKIMREAVAIVPEGRRVFS--RMTVEENLAmggFFADRSQYQERIQRVYDLfpRLHERRI-QR 134
Cdd:cd03271 94 VFD--EIRELfcevcKGKRYNRETLEVRYKGKSIADvlDMTVEEALE---FFENIPKIARKLQTLCDV--GLGYIKLgQP 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 135 AGTMSGGEQQMLAIGRALMSQPR---LLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANqALKLADrgYVLE 211
Cdd:cd03271 167 ATTLSGGEAQRIKLAKELSKRSTgktLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD-VIKCAD--WIID 243
|
..
gi 754513351 212 NG 213
Cdd:cd03271 244 LG 245
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
16-186 |
8.72e-07 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 48.95 E-value: 8.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 16 GKIQALHEVSLHIRQGEIVTLIGANGAGKT----TLLGTLCGDPRAStGKIVFDGKDITDWQTAKIMR---EAVAIVpeg 88
Cdd:PRK09473 27 GDVTAVNDLNFSLRAGETLGIVGESGSGKSqtafALMGLLAANGRIG-GSATFNGREILNLPEKELNKlraEQISMI--- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 89 rrvFSR--------MTVEENLA--------MGGFFAdrsqYQERIqRVYDL--FPRLHERRIQRAGTMSGGEQQMLAIGR 150
Cdd:PRK09473 103 ---FQDpmtslnpyMRVGEQLMevlmlhkgMSKAEA----FEESV-RMLDAvkMPEARKRMKMYPHEFSGGMRQRVMIAM 174
|
170 180 190
....*....|....*....|....*....|....*.
gi 754513351 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE 186
Cdd:PRK09473 175 ALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE 210
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
16-190 |
1.19e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 48.95 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 16 GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGdpRASTGKIvfdgkditdwqTAKIMreavaIV--PEGRRVFS 93
Cdd:TIGR00956 774 EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE--RVTTGVI-----------TGGDR-----LVngRPLDSSFQ 835
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 94 R--------------MTVEENLAMGGFF--------ADRSQYQERIQRVYDLfPRLHERRIQRAGTMSGGEQ-QMLAIGR 150
Cdd:TIGR00956 836 RsigyvqqqdlhlptSTVRESLRFSAYLrqpksvskSEKMEYVEEVIKLLEM-ESYADAVVGVPGEGLNVEQrKRLTIGV 914
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 754513351 151 ALMSQPRLLL-LDEPSLGL----APIIIQqifdTIEQLRKEGMTI 190
Cdd:TIGR00956 915 ELVAKPKLLLfLDEPTSGLdsqtAWSICK----LMRKLADHGQAI 955
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
17-168 |
1.64e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 48.57 E-value: 1.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 17 KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDP----RASTGKIVFDGkdITDWQTAKIMREAVAIVPEGRRVF 92
Cdd:TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTdgfhIGVEGVITYDG--ITPEEIKKHYRGDVVYNAETDVHF 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 93 SRMTVEENLAmggfFADRSQ----------YQERIQRVYDLFPRLHERRIQR---AGT-----MSGGEQQMLAIGRALMS 154
Cdd:TIGR00956 151 PHLTVGETLD----FAARCKtpqnrpdgvsREEYAKHIADVYMATYGLSHTRntkVGNdfvrgVSGGERKRVSIAEASLG 226
|
170
....*....|....
gi 754513351 155 QPRLLLLDEPSLGL 168
Cdd:TIGR00956 227 GAKIQCWDNATRGL 240
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
20-222 |
1.81e-06 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 47.50 E-value: 1.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 20 ALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKditdwqtakimreaVAIVPEGRRVFSRMTVEE 99
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE--------------VSVIAISAGLSGQLTGIE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 100 N-----LAMGgffADRSQYQERIQRVYDlFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP-SLGlAPIII 173
Cdd:PRK13546 105 NiefkmLCMG---FKRKEIKAMTPKIIE-FSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAlSVG-DQTFA 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 754513351 174 QQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHvvLEDTGE 222
Cdd:PRK13546 180 QKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGK--LKDYGE 226
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
3-165 |
2.36e-06 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 48.01 E-value: 2.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 3 NVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDgkditdwQTAKI----- 77
Cdd:TIGR03719 320 DKVIEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIG-------ETVKLayvdq 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 78 MREAVA---------------IVPEGRRVFSRmtveenlAMGGFFADRSQYQEriqrvydlfprlherriQRAGTMSGGE 142
Cdd:TIGR03719 393 SRDALDpnktvweeisggldiIKLGKREIPSR-------AYVGRFNFKGSDQQ-----------------KKVGQLSGGE 448
|
170 180
....*....|....*....|...
gi 754513351 143 QQMLAIGRALMSQPRLLLLDEPS 165
Cdd:TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPT 471
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
27-170 |
2.75e-06 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 46.77 E-value: 2.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 27 HIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMrEAVAIVPEGRRVFSRMtveENL----A 102
Cdd:PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFM-AYLGHLPGLKADLSTL---ENLhflcG 108
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 754513351 103 MGGFFADRSQYQE-RIQRVYDlfprlHERRIQRagTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAP 170
Cdd:PRK13543 109 LHGRRAKQMPGSAlAIVGLAG-----YEDTLVR--QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
3-165 |
2.75e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 47.86 E-value: 2.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 3 NVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIvfdgkditdwqtakimreav 82
Cdd:PRK10636 310 NPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI-------------------- 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 aivpegrrvfsrmtveeNLAMG---GFFAdrsQYQ--------ERIQRVYDLFPRLHERRI---------------QRAG 136
Cdd:PRK10636 370 -----------------GLAKGiklGYFA---QHQleflradeSPLQHLARLAPQELEQKLrdylggfgfqgdkvtEETR 429
|
170 180
....*....|....*....|....*....
gi 754513351 137 TMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
Cdd:PRK10636 430 RFSGGEKARLVLALIVWQRPNLLLLDEPT 458
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
6-164 |
3.33e-06 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 47.19 E-value: 3.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 6 LSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKI----------------------- 62
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVkwsenanigyyaqdhaydfendl 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 63 -VFDGkdITDWQTAKIMREAV-AIVpeGRRVFSrmtveenlamggffadrsqyQERIQRvydlfprlherriqRAGTMSG 140
Cdd:PRK15064 400 tLFDW--MSQWRQEGDDEQAVrGTL--GRLLFS--------------------QDDIKK--------------SVKVLSG 441
|
170 180
....*....|....*....|....
gi 754513351 141 GEQQMLAIGRALMSQPRLLLLDEP 164
Cdd:PRK15064 442 GEKGRMLFGKLMMQKPNVLVMDEP 465
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
1-164 |
3.78e-06 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 47.04 E-value: 3.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDRVS-AHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLL------------------GTLCG-------- 53
Cdd:PRK11819 2 MAQYIYTMNRVSkVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLrimagvdkefegearpapGIKVGylpqepql 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 54 DPRASTGKIVFDGkditdwqtakiMREAVAIVPEGRRVFSRMTvEENLAMGGFFADRSQYQERIQRV--YDLfprlhERR 131
Cdd:PRK11819 82 DPEKTVRENVEEG-----------VAEVKAALDRFNEIYAAYA-EPDADFDALAAEQGELQEIIDAAdaWDL-----DSQ 144
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 754513351 132 IQRA-------------GTMSGGEQQMLAIGRALMSQPRLLLLDEP 164
Cdd:PRK11819 145 LEIAmdalrcppwdakvTKLSGGERRRVALCRLLLEKPDMLLLDEP 190
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
4-163 |
3.88e-06 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 46.10 E-value: 3.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 4 VMLSFDrVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMrEAVA 83
Cdd:COG2401 30 VLEAFG-VELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCVDVPDNQFGREASLI-DAIG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 84 ivpegrRVFSRMTVEENLAMGGffadrsqyqerIQRVYDLFPRLHErriqragtMSGGEQQMLAIGRALMSQPRLLLLDE 163
Cdd:COG2401 108 ------RKGDFKDAVELLNAVG-----------LSDAVLWLRRFKE--------LSTGQKFRFRLALLLAERPKLLVIDE 162
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
1-164 |
7.02e-06 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 46.48 E-value: 7.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFDrvsahyGKiQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIvfdgKDITDWQTAKIMRE 80
Cdd:PRK11147 322 MENVNYQID------GK-QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI----HCGTKLEVAYFDQH 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 81 AVAIVPEgrrvfsrMTVEENLAMG--------------GFFADRsqyqeriqrvydLFPRLHERRIQRAgtMSGGEQQML 146
Cdd:PRK11147 391 RAELDPE-------KTVMDNLAEGkqevmvngrprhvlGYLQDF------------LFHPKRAMTPVKA--LSGGERNRL 449
|
170
....*....|....*...
gi 754513351 147 AIGRALMSQPRLLLLDEP 164
Cdd:PRK11147 450 LLARLFLKPSNLLILDEP 467
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
135-237 |
1.07e-05 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 45.79 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 135 AGTMSGGEQQ--MLA--IGRALMSQprLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNAnQALKLADrgYVL 210
Cdd:COG0178 483 AGTLSGGEAQriRLAtqIGSGLVGV--LYVLDEPSIGLHQRDNDRLIETLKRLRDLGNTVIVVEHDE-DTIRAAD--YII 557
|
90 100 110
....*....|....*....|....*....|....*.
gi 754513351 211 E--------NGHVVLEDTGEALLANEA-VRSAYLGG 237
Cdd:COG0178 558 DigpgagehGGEVVAQGTPEEILKNPDsLTGQYLSG 593
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
5-165 |
1.46e-05 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 45.55 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGkditDWQTAKIMREAVAI 84
Cdd:PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----NWQLAWVNQETPAL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 85 -------VPEGRRVFSRMTVEENLAM----GGFFADRSQYQERIQ------RVYDLFPRL---HERRIQRAGTMSGGEQQ 144
Cdd:PRK10636 77 pqpaleyVIDGDREYRQLEAQLHDANerndGHAIATIHGKLDAIDawtirsRAASLLHGLgfsNEQLERPVSDFSGGWRM 156
|
170 180
....*....|....*....|.
gi 754513351 145 MLAIGRALMSQPRLLLLDEPS 165
Cdd:PRK10636 157 RLNLAQALICRSDLLLLDEPT 177
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
21-164 |
5.02e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 44.00 E-value: 5.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIvfdgkditdWQTAKImreavAIVPEGRRVFSrMTVEEN 100
Cdd:PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV---------WAERSI-----AYVPQQAWIMN-ATVRGN 740
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 754513351 101 LAmggFFADRSqyQERIQ---RVYDLFPRLH------ERRIQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDEP 164
Cdd:PTZ00243 741 IL---FFDEED--AARLAdavRVSQLEADLAqlggglETEIGEKGvNLSGGQKARVSLARAVYANRDVYLLDDP 809
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
17-190 |
5.27e-05 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 44.07 E-value: 5.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 17 KIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGdpRASTGKIVFDGKditdwqtakimreaVAIVPEGRRVFSRM- 95
Cdd:PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIR--------------ISGFPKKQETFARIs 955
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 96 -------------TVEENLAMGGFF---ADRSQYQERI--QRVYDL--FPRLHERRIQRAGT--MSGGEQQMLAIGRALM 153
Cdd:PLN03140 956 gyceqndihspqvTVRESLIYSAFLrlpKEVSKEEKMMfvDEVMELveLDNLKDAIVGLPGVtgLSTEQRKRLTIAVELV 1035
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 754513351 154 SQPRLLLLDEPSLGL----APIIIQQIFDTIEQLRKEGMTI 190
Cdd:PLN03140 1036 ANPSIIFMDEPTSGLdaraAAIVMRTVRNTVDTGRTVVCTI 1076
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
16-216 |
6.39e-05 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 43.69 E-value: 6.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 16 GKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDIT--DWQTAKIMREAVAIVPEGRRVFS 93
Cdd:PRK10261 27 QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRrrSRQVIELSEQSAAQMRHVRGADM 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 94 RMTVEENL-AMGGFFADRSQYQERIqRVYDLFPR----------LHERRIQRAGTM--------SGGEQQMLAIGRALMS 154
Cdd:PRK10261 107 AMIFQEPMtSLNPVFTVGEQIAESI-RLHQGASReeamveakrmLDQVRIPEAQTIlsryphqlSGGMRQRVMIAMALSC 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754513351 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKE-GMTIFLVEQNANQALKLADRGYVLENGHVV 216
Cdd:PRK10261 186 RPAVLIADEPTTALDVTIQAQILQLIKVLQKEmSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
5-193 |
1.17e-04 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 42.09 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 5 MLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCG--DPRASTGKIVFDGKDITDWQTAKIMREA- 81
Cdd:PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGreDYEVTGGTVEFKGKDLLELSPEDRAGEGi 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 82 -------VAIVPEGRRVFSRMTVEENLAMGGFFA-DRSQYQERIQ---RVYDLFPRLHERRIQRAgtMSGGEQQMLAIGR 150
Cdd:PRK09580 81 fmafqypVEIPGVSNQFFLQTALNAVRSYRGQEPlDRFDFQDLMEekiALLKMPEDLLTRSVNVG--FSGGEKKRNDILQ 158
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 754513351 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLV 193
Cdd:PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIV 201
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
3-165 |
1.18e-04 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 42.80 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 3 NVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLcgdprasTGKIVFDGKDITDWQTAKImreav 82
Cdd:PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMI-------TGQEQPDSGTIKIGETVKL----- 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 83 AIVPEGRrvfsrmtveENLAmggffADRSQYQErIQRVYDLFpRLHERRI-----------------QRAGTMSGGEQQM 145
Cdd:PRK11819 390 AYVDQSR---------DALD-----PNKTVWEE-ISGGLDII-KVGNREIpsrayvgrfnfkggdqqKKVGVLSGGERNR 453
|
170 180
....*....|....*....|
gi 754513351 146 LAIGRALMSQPRLLLLDEPS 165
Cdd:PRK11819 454 LHLAKTLKQGGNVLLLDEPT 473
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
135-237 |
1.87e-04 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 42.37 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 135 AGTMSGGEQQ--MLA--IGRALMSQprLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNaNQALKLADrgYVL 210
Cdd:PRK00349 487 AGTLSGGEAQriRLAtqIGSGLTGV--LYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHD-EDTIRAAD--YIV 561
|
90 100 110
....*....|....*....|....*....|....*.
gi 754513351 211 E--------NGHVVLEDTGEALLANEA-VRSAYLGG 237
Cdd:PRK00349 562 DigpgagvhGGEVVASGTPEEIMKNPNsLTGQYLSG 597
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
135-212 |
2.28e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 41.94 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 135 AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIIIQQifdTIEQLRKEGMTIFLVEQNANQALKLADRGYVLE 211
Cdd:PTZ00265 577 ASKLSGGQKQRISIARAIIRNPKILILDEATSSLdnkSEYLVQK---TINNLKGNENRITIIIAHRLSTIRYANTIFVLS 653
|
.
gi 754513351 212 N 212
Cdd:PTZ00265 654 N 654
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
21-192 |
2.82e-04 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 41.14 E-value: 2.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 21 LHEVSLHIRQGeIVTLIGANGAGKTTLL-------------------GTLCGDPRASTGKI--VFDG------KDITDWQ 73
Cdd:COG3593 14 IKDLSIELSDD-LTVLVGENNSGKSSILealrlllgpsssrkfdeedFYLGDDPDLPEIEIelTFGSllsrllRLLLKEE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 74 TAKIMREAVAIVPEG-RRVFSRMT--VEENLAMGGFFAD-----RSQYQERIQRVYDL-FPRLHERRIQRAGTmsgGEQQ 144
Cdd:COG3593 93 DKEELEEALEELNEElKEALKALNelLSEYLKELLDGLDlelelSLDELEDLLKSLSLrIEDGKELPLDRLGS---GFQR 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 754513351 145 M--LAIGRALM-----SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFL 192
Cdd:COG3593 170 LilLALLSALAelkraPANPILLIEEPEAHLHPQAQRRLLKLLKELSEKPNQVII 224
|
|
| PRK01889 |
PRK01889 |
GTPase RsgA; Reviewed |
11-62 |
3.41e-04 |
|
GTPase RsgA; Reviewed
Pssm-ID: 234988 [Multi-domain] Cd Length: 356 Bit Score: 41.07 E-value: 3.41e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 754513351 11 VSAHYGK-IQALHEVslhIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKI 62
Cdd:PRK01889 177 VSALDGEgLDVLAAW---LSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAV 226
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
1-165 |
5.14e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 41.00 E-value: 5.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 1 MENVMLSFdrvsahyGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLC-----GDPRAST-----GKIVfdGKDIT 70
Cdd:PLN03073 180 MENFSISV-------GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAmhaidGIPKNCQilhveQEVV--GDDTT 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 71 --------DWQTAKIMREAVAIVPEGRRV-FSRMTVEENLAMGGFfADRSQYQERIQRVYDlfpRLH------------- 128
Cdd:PLN03073 251 alqcvlntDIERTQLLEEEAQLVAQQRELeFETETGKGKGANKDG-VDKDAVSQRLEEIYK---RLElidaytaearaas 326
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 754513351 129 ---------ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
Cdd:PLN03073 327 ilaglsftpEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPT 372
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
8-211 |
9.49e-04 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 38.71 E-value: 9.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 8 FDRVSAHYGKIQALHEVSLhIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDItdwqtakimreavaivpe 87
Cdd:cd03222 3 YPDCVKRYGVFFLLVELGV-VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP------------------ 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 88 grrvfsrmtveenlamggffADRSQYQEriqrvydlfprlherriqragtMSGGEQQMLAIGRALMSQPRLLLLDEPSlg 167
Cdd:cd03222 64 --------------------VYKPQYID----------------------LSGGELQRVAIAAALLRNATFYLFDEPS-- 99
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 754513351 168 lAPIIIQQIFDTIEQLRKEGM----TIFLVEQNANQALKLADRGYVLE 211
Cdd:cd03222 100 -AYLDIEQRLNAARAIRRLSEegkkTALVVEHDLAVLDYLSDRIHVFE 146
|
|
| SbcC_Walker_B |
pfam13558 |
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from ... |
130-182 |
1.38e-03 |
|
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homolog SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is separated of the Walker A domain by a long coiled-coil domain and forms the nucleotide-binding domain (NBD) when the coiled coils fold back on themselves and bring together Walker A and B domains. Two RAD50-NBDs forms heterotetramers with a Mre11 nuclease dimer that assemble as catalytic head module that binds and cleaves DNA in an ATP-dependent reaction. Through secondary structural analysis, it has been suggested that there is a wide structural conservation in the Rad50/SMC protein family as seen in structural similarities between RAD50's hook and ABC-ATPase MukB's elbow region.
Pssm-ID: 463921 [Multi-domain] Cd Length: 90 Bit Score: 36.83 E-value: 1.38e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754513351 130 RRIQRAGTMSGGEQQML---AIGRALMSQ----------PRLLLLDEPSLGLAPIIIQQIFDTIEQ 182
Cdd:pfam13558 25 ETYRRSGGLSGGEKQLLaylPLAAALAAQygsaegrppaPRLVFLDEAFAKLDEENIRTALELLRA 90
|
|
| YjeQ_EngC |
cd01854 |
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; ... |
11-62 |
1.78e-03 |
|
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain.
Pssm-ID: 206747 [Multi-domain] Cd Length: 211 Bit Score: 38.15 E-value: 1.78e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 754513351 11 VSAHYGK-IQALHEvslHIRqGEIVTLIGANGAGKTTLLGTLCGDPRASTGKI 62
Cdd:cd01854 68 VSAKTGEgLDELRE---LLK-GKTSVLVGQSGVGKSTLLNALLPELVLATGEI 116
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
95-196 |
3.24e-03 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 38.47 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754513351 95 MTVEENLAmggFFADRSQYQERIQRVYDL---FPRLHerriQRAGTMSGGEQQMLAIGRALM---SQPRLLLLDEPSLGL 168
Cdd:COG0178 788 MTVEEALE---FFENIPKIARKLQTLQDVglgYIKLG----QPATTLSGGEAQRVKLASELSkrsTGKTLYILDEPTTGL 860
|
90 100
....*....|....*....|....*...
gi 754513351 169 APIIIQQIFDTIEQLRKEGMTIFLVEQN 196
Cdd:COG0178 861 HFHDIRKLLEVLHRLVDKGNTVVVIEHN 888
|
|
| |
