|
Name |
Accession |
Description |
Interval |
E-value |
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
1-456 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 705.74 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 1 MTASLWQQCLNRLQDELPSAEFSMWIRPLQ-AELSDNTLTLYAPNRFVLDWVRDKYLirvnGIINElcgvdgpALRFdig 79
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKaLSLEDNTLTLYVPNRFVKDWIEKNYL----DLIEE-------ALQL--- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 80 nrphpvavarapaqgaapvnnlqksweskaeakpepnhksntNVNYTFENFVEGKSNQLARAAARQVADNPGGAYNPLFL 159
Cdd:PRK00149 67 ------------------------------------------NPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFI 104
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 160 YGGTGLGKTHLLHAVGNAIKESKKDAKVIYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEF 239
Cdd:PRK00149 105 YGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEF 184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 240 FHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKADENQIHLPDEVAFFIAKRLR 319
Cdd:PRK00149 185 FHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNIT 264
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 320 SNVRELEGALNRVIANANFTGRAINIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKLADLLSKRRSRSVARPRQLA 399
Cdd:PRK00149 265 SNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIA 344
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 754641310 400 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLKEESHDIKEDYSNLIRTLSS 456
Cdd:PRK00149 345 MYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
6-454 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 704.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 6 WQQCLNRLQDELPSAEFSMWIRPLQA-ELSDNTLTLYAPNRFVLDWVRDKYLirvNGIINELCGVDGPALRFDIGNRPHP 84
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLlSIEGNTLIISVPNEFVKEWIEKNYL---DLIEELLQELFGAEIEIEFTVGEDE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 85 VAVARAPAQGAAPVNnlqksweskaEAKPEPNHKSNTNVNYTFENFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTG 164
Cdd:TIGR00362 78 EELEPNSKKPEPAPP----------EAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 165 LGKTHLLHAVGNAIKESKKDAKVIYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFN 244
Cdd:TIGR00362 148 LGKTHLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFN 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 245 ALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKADENQIHLPDEVAFFIAKRLRSNVRE 324
Cdd:TIGR00362 228 ALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRE 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 325 LEGALNRVIANANFTGRAINIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKLADLLSKRRSRSVARPRQLAMALAK 404
Cdd:TIGR00362 308 LEGALNRLLAYASLTGKPITLELAKEALKDLLRAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAK 387
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 754641310 405 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLKEESHDIKEDYSNLIRTL 454
Cdd:TIGR00362 388 ELTDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
122-423 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 549.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 122 NVNYTFENFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIKESKKDAKVIYMHSERFVQDMVK 201
Cdd:COG0593 2 NPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFIN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 202 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 281
Cdd:COG0593 82 AIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLVV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 282 AIEPPELETRVAILMRKADENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDFVREALRDLLALQEK 361
Cdd:COG0593 162 DIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQKK 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754641310 362 LVTIDNIQKTVAEYYKIKLADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDH 423
Cdd:COG0593 242 EITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
122-339 |
4.74e-125 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 362.03 E-value: 4.74e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 122 NVNYTFENFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIKESKKDAKVIYMHSERFVQDMVK 201
Cdd:pfam00308 2 NPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFVD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 202 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 281
Cdd:pfam00308 82 AIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLVT 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 754641310 282 AIEPPELETRVAILMRKADENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFT 339
Cdd:pfam00308 162 DIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
365-454 |
1.53e-41 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 142.65 E-value: 1.53e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 365 IDNIQKTVAEYYKIKLADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLKEESHDIK 444
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 754641310 445 EDYSNLIRTL 454
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
364-432 |
1.64e-37 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 131.09 E-value: 1.64e-37
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 754641310 364 TIDNIQKTVAEYYKIKLADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRK 432
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
1-456 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 705.74 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 1 MTASLWQQCLNRLQDELPSAEFSMWIRPLQ-AELSDNTLTLYAPNRFVLDWVRDKYLirvnGIINElcgvdgpALRFdig 79
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKaLSLEDNTLTLYVPNRFVKDWIEKNYL----DLIEE-------ALQL--- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 80 nrphpvavarapaqgaapvnnlqksweskaeakpepnhksntNVNYTFENFVEGKSNQLARAAARQVADNPGGAYNPLFL 159
Cdd:PRK00149 67 ------------------------------------------NPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFI 104
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 160 YGGTGLGKTHLLHAVGNAIKESKKDAKVIYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEF 239
Cdd:PRK00149 105 YGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEF 184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 240 FHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKADENQIHLPDEVAFFIAKRLR 319
Cdd:PRK00149 185 FHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNIT 264
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 320 SNVRELEGALNRVIANANFTGRAINIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKLADLLSKRRSRSVARPRQLA 399
Cdd:PRK00149 265 SNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIA 344
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 754641310 400 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLKEESHDIKEDYSNLIRTLSS 456
Cdd:PRK00149 345 MYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
6-454 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 704.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 6 WQQCLNRLQDELPSAEFSMWIRPLQA-ELSDNTLTLYAPNRFVLDWVRDKYLirvNGIINELCGVDGPALRFDIGNRPHP 84
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLlSIEGNTLIISVPNEFVKEWIEKNYL---DLIEELLQELFGAEIEIEFTVGEDE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 85 VAVARAPAQGAAPVNnlqksweskaEAKPEPNHKSNTNVNYTFENFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTG 164
Cdd:TIGR00362 78 EELEPNSKKPEPAPP----------EAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 165 LGKTHLLHAVGNAIKESKKDAKVIYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFN 244
Cdd:TIGR00362 148 LGKTHLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFN 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 245 ALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKADENQIHLPDEVAFFIAKRLRSNVRE 324
Cdd:TIGR00362 228 ALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRE 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 325 LEGALNRVIANANFTGRAINIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKLADLLSKRRSRSVARPRQLAMALAK 404
Cdd:TIGR00362 308 LEGALNRLLAYASLTGKPITLELAKEALKDLLRAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAK 387
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 754641310 405 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLKEESHDIKEDYSNLIRTL 454
Cdd:TIGR00362 388 ELTDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
122-423 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 549.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 122 NVNYTFENFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIKESKKDAKVIYMHSERFVQDMVK 201
Cdd:COG0593 2 NPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFIN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 202 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 281
Cdd:COG0593 82 AIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLVV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 282 AIEPPELETRVAILMRKADENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDFVREALRDLLALQEK 361
Cdd:COG0593 162 DIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQKK 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754641310 362 LVTIDNIQKTVAEYYKIKLADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDH 423
Cdd:COG0593 242 EITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
122-339 |
4.74e-125 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 362.03 E-value: 4.74e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 122 NVNYTFENFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIKESKKDAKVIYMHSERFVQDMVK 201
Cdd:pfam00308 2 NPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFVD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 202 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 281
Cdd:pfam00308 82 AIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLVT 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 754641310 282 AIEPPELETRVAILMRKADENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFT 339
Cdd:pfam00308 162 DIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
81-443 |
3.91e-121 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 366.46 E-value: 3.91e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 81 RPHPVAVAR------APAQGAAPVNNLQKSWESKAEAKPEP-----NHKSNTNVNYTFENFVEGKSNQLARAAARQVADN 149
Cdd:PRK14086 230 EPPPGAGHVhrggpgPPERDDAPVVPIRPSAPGPLAAQPAPapgpgEPTARLNPKYTFDTFVIGASNRFAHAAAVAVAEA 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 150 PGGAYNPLFLYGGTGLGKTHLLHAVGNAIKESKKDAKVIYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFF 229
Cdd:PRK14086 310 PAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 230 ANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKADENQIHLPDE 309
Cdd:PRK14086 390 EDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPE 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 310 VAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDFVREALRDLLALQEKL-VTIDNIQKTVAEYYKIKLADLLSKRR 388
Cdd:PRK14086 470 VLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPEDSAPeITAAAIMAATADYFGLTVEDLCGTSR 549
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 754641310 389 SRSVARPRQLAMALAKELTNHSLPEIGDAFgGRDHTTVLHACRKIEQLKEESHDI 443
Cdd:PRK14086 550 SRVLVTARQIAMYLCRELTDLSLPKIGQQF-GRDHTTVMHADRKIRALMAERRSI 603
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
6-456 |
1.62e-76 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 245.90 E-value: 1.62e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 6 WQQCLNRLQDELPSAEFSMWIRPLQAELSDN-TLTLYAPNRFVLDWVRDKYLIRVN-GIINelcgvdgpalrfdigNRPH 83
Cdd:PRK12422 4 WEEFLLLQEKEIGTETVDKWLRSLKVLCFDAcNLYLEAKDSFQVTWFEEHIRHKVKaSLVN---------------NNGK 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 84 PVAVARAPAQGAAPvnnlqKSWESKAEAKPEPN---HKSNTNVNYTFENFVEGKSNQLARAAARQVA----DNPGGAYNP 156
Cdd:PRK12422 69 PIRVHVTSLDKSTP-----FKKEKQIQQEKTAYftmKYGELDPLMTFANFLVTPENDLPHRILQEFTkvseQGKGFPFNP 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 157 LFLYGGTGLGKTHLLHAVGNAIKESKKdaKVIYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQ 236
Cdd:PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRESGG--KILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQ 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 237 EEFFHTFNAL-LEGnQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKADENQIHLPDEVAFFIA 315
Cdd:PRK12422 222 EEFFHTFNSLhTEG-KLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLI 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 316 KRLRSNVRELEGALNRV---IANANFTGRAINIDFVREALRDLLALQEKL-VTIDNIQKTVAEYYKIKLADLLSKRRSRS 391
Cdd:PRK12422 301 EALSSNVKSLLHALTLLakrVAYKKLSHQLLYVDDIKALLHDVLEAAESVrLTPSKIIRAVAQYYGVSPESILGRSQSRE 380
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754641310 392 VARPRQLAMALAKELTNHSLPEIGDAFgGRDHTTVLHACRKIEQ-LKEESHDIKEDYSNLIRTLSS 456
Cdd:PRK12422 381 YVLPRQVAMYLCRQKLSLSYVKIGDVF-SRDHSTVISSIRAISQkLEEDDRDISMAIQEITKRLSS 445
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
365-454 |
1.53e-41 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 142.65 E-value: 1.53e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 365 IDNIQKTVAEYYKIKLADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLKEESHDIK 444
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 754641310 445 EDYSNLIRTL 454
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
365-433 |
1.48e-39 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 136.76 E-value: 1.48e-39
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 754641310 365 IDNIQKTVAEYYKIKLADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 433
Cdd:pfam08299 1 IEKIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
364-432 |
1.64e-37 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 131.09 E-value: 1.64e-37
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 754641310 364 TIDNIQKTVAEYYKIKLADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRK 432
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
126-353 |
2.18e-35 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 130.77 E-value: 2.18e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 126 TFENFVEGkSNQLARAAARQVADNPGGayNPLFLYGGTGLGKTHLLHAVGNAIKEskKDAKVIYMHSERFVQDMVKALqn 205
Cdd:TIGR03420 13 TFDNFYAG-GNAELLAALRQLAAGKGD--RFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAELAQADPEVL-- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 206 NAIEEFkryyrsvDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 285
Cdd:TIGR03420 86 EGLEQA-------DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 754641310 286 PELETRVAILMRKADENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDFVREALR 353
Cdd:TIGR03420 159 LSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVLA 226
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
126-353 |
1.02e-20 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 90.51 E-value: 1.02e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 126 TFENFVEGKSNQLArAAARQVADNPGGAYnpLFLYGGTGLGKTHLLHAvgnAIKE-SKKDAKVIYMHSER---FVQDMVK 201
Cdd:PRK08084 20 TFASFYPGDNDSLL-AALQNALRQEHSGY--IYLWSREGAGRSHLLHA---ACAElSQRGRAVGYVPLDKrawFVPEVLE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 202 ALQnnaieefkryyrSVDALLIDDIQFFANKERSQEEFFHTFNALLE-GNQQIILTSDRYPKEINGVEDRLKSRFGWGLT 280
Cdd:PRK08084 94 GME------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILEsGRTRLLITGDRPPRQLNLGLPDLASRLDWGQI 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754641310 281 VAIEPPELETRVAILMRKADENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDFVREALR 353
Cdd:PRK08084 162 YKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
136-279 |
2.60e-19 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 84.51 E-value: 2.60e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 136 NQLARAAARQVADNPggAYNPLFLYGGTGLGKTHLLHAVGNAIKESKkdAKVIYMHSERFVQDMVKALQ----NNAIEEF 211
Cdd:cd00009 3 QEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPG--APFLYLNASDLLEGLVVAELfghfLVRLLFE 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754641310 212 KRYYRSVDALLIDDIQFFANKERSQ-EEFFHTFNALLE--GNQQIILTSDR--YPKEINGVEDRLKSRFGWGL 279
Cdd:cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNAlLRVLETLNDLRIdrENVRVIGATNRplLGDLDRALYDRLDIRIVIPL 151
|
|
| DnaA_N |
pfam11638 |
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a ... |
3-65 |
3.28e-18 |
|
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a protein involved in the initiation of bacterial chromosomal replication. The structure of this domain is known. It is also found in three copies in some proteins. The exact function of this domain is uncertain but it has been suggested to play a role in oligomerization.
Pssm-ID: 463316 [Multi-domain] Cd Length: 65 Bit Score: 78.48 E-value: 3.28e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 754641310 3 ASLWQQCLNRLQDELPSAEFSMWIRPLQAELSDNT--LTLYAPNRFVLDWVRDKYLIRVNGIINE 65
Cdd:pfam11638 1 EELWERVLERLRKEVGEQTFNTWIKPLTLVDLDDGgsLTLSVPNRFVRDWVEEHYLDRILELWQE 65
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
126-352 |
2.10e-15 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 75.01 E-value: 2.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 126 TFENFVEGKSNQLARAAARQVADNPGGAYnpLFLYGGTGLGKTHLLHAVGNAIKESKKDAkvIYmhserfvqdmvkaLQN 205
Cdd:PRK08903 16 TFDNFVAGENAELVARLRELAAGPVADRF--FYLWGEAGSGRSHLLQALVADASYGGRNA--RY-------------LDA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 206 NAIEEFKRYYRSVDALLIDDIQFFANKErsQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 285
Cdd:PRK08903 79 ASPLLAFDFDPEAELYAVDDVERLDDAQ--QIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754641310 286 PELETRVAILMRKADENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDFVREAL 352
Cdd:PRK08903 157 LSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREML 223
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
126-257 |
1.56e-11 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 64.03 E-value: 1.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 126 TFENFVEGKSNQLARAAARQVADnpgGAY----NPLFLYGGTGLGKTHLLHAVGN-AIKeskKDAKVIYMHSERFVQDMV 200
Cdd:COG1484 70 TLEDFDFDAQPGLDRRQILELAT---LDFiergENLILLGPPGTGKTHLAIALGHeACR---AGYRVRFTTAPDLVNELK 143
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 754641310 201 KALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEgNQQIILTS 257
Cdd:COG1484 144 EARADGRLERLLKRLAKVDLLILDELGYLPLDAEGAELLFELISDRYE-RRSTIITS 199
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
372-439 |
2.66e-11 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 60.56 E-value: 2.66e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 754641310 372 VAEYYKIKLADLLS-KRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGgRDHTTVLHACRKIEQLKEE 439
Cdd:PRK06030 32 LALAFGVSGAEIASpLRGRREVSRIRQIAMYVAHVSLGWPMNEVALAFG-RDRTTVGHACHTVEDLRDD 99
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
124-274 |
3.01e-08 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 54.64 E-value: 3.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 124 NYTFENF-VEGKSNQLARAAARQV-------ADNPGgaynpLFLYGGTGLGKTHLLHAVGNAIkeSKKDAKVIYMHSERF 195
Cdd:PRK08116 81 NSTFENFlFDKGSEKAYKIARKYVkkfeemkKENVG-----LLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVNFPQL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 196 VQDMVKALQNNAIEEFKRYYRSV---DALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEI-NGVEDRL 271
Cdd:PRK08116 154 LNRIKSTYKSSGKEDENEIIRSLvnaDLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELkNQYGKRI 233
|
...
gi 754641310 272 KSR 274
Cdd:PRK08116 234 YDR 236
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
155-275 |
5.31e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.99 E-value: 5.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 155 NPLFLYGGTGLGKTHLLHAVGNAIKesKKDAKVIYMHSERFVQDMVKALQNNAIEEFKRY---------------YRSVD 219
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASgsgelrlrlalalarKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 754641310 220 ALLIDDIQFFANKERSQEEFFHTFNALL-----EGNQQIILTSDRYPKEIngvEDRLKSRF 275
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLEELRLLlllksEKNLTVILTTNDEKDLG---PALLRRRF 138
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
157-275 |
9.76e-08 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 53.75 E-value: 9.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 157 LFLYGGTGLGKTHLLHAVGNAIKESKKdaKVIYMHSERFVQDMVKA-LQNNAIEEFKR-YYRSVDALLIDDIQFFANKER 234
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCIAKELLDRGK--SVIYRTADELIEILREIrFNNDKELEEVYdLLINCDLLIIDDLGTEKITEF 263
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 754641310 235 SQEEFFHTFNA-LLEGNQQIILT-------SDRYPKEINGvedRLKSRF 275
Cdd:PRK06835 264 SKSELFNLINKrLLRQKKMIISTnlsleelLKTYSERISS---RLLGNF 309
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
157-226 |
1.80e-07 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 52.56 E-value: 1.80e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 157 LFLYGGTGLGKTHLLHAVGNAIKESKKDAKVIYMHSerFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 226
Cdd:PRK08939 159 LYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE--FIRELKNSISDGSVKEKIDAVKEAPVLMLDDI 226
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
126-283 |
8.51e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 44.00 E-value: 8.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 126 TFENFV-EGKSNQLARA---AARQVADNP---GGAYNPLFLYGGTGLGKTHLLHAVGNAIKEsKKDAKVIYMhseRFVQD 198
Cdd:PRK06921 82 TFKNFKtEGKPQAIKDAyecAVEYVKDFEkiqESRKNSIALLGQPGSGKTHLLTAAANELMR-KKGVPVLYF---PFVEG 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 199 MVKaLQNN--AIEEFKRYYRSVDALLIDDIQFFANKERSQEEF-----FHTFNALLEGNQQIILTSDRYPKEINGVEDRL 271
Cdd:PRK06921 158 FGD-LKDDfdLLEAKLNRMKKVEVLFIDDLFKPVNGKPRATEWqieqmYSVLNYRYLNHKPILISSELTIDELLDIDEAL 236
|
170
....*....|....*
gi 754641310 272 KSRF---GWGLTVAI 283
Cdd:PRK06921 237 GSRIvemCKDYLVII 251
|
|
| PRK06672 |
PRK06672 |
hypothetical protein; Validated |
6-189 |
1.30e-04 |
|
hypothetical protein; Validated
Pssm-ID: 180654 [Multi-domain] Cd Length: 341 Bit Score: 43.98 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 6 WQQCLNRLQDELPSAEFSMWIRPLQAELSDNTLTLYAPNRFVLDWVRDKYLIRVNGIINELCGVDGpALRFDIGNrPHPV 85
Cdd:PRK06672 5 WTEVKEKIRPQISKPSYETWFTNTTVYLEDDILTIYCPNEFARDWLESHYKELVFNTLREMFNTTF-EIQFDLCN-GEPS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 86 AVARAPAQGAAPVNNLQKSWESKAEAKPEPNHKSNTNVNYT------------FENFVEGKSNQLARAAARQVADNpggA 153
Cdd:PRK06672 83 NLKDVQKEKLSSWDEVKKALRPKIAEKTFMTWIRNTNATIKdnkviifcedafHRDLLEGEYKNIISSTVQKITDE---E 159
|
170 180 190
....*....|....*....|....*....|....*.
gi 754641310 154 YNPLFLYGGTGLGKTHLLHAVGNAIKESKKDAKVIY 189
Cdd:PRK06672 160 YQIWFEIGSSATSKAQVHHVKNNQRTSGQEESKTIW 195
|
|
| PRK06672 |
PRK06672 |
hypothetical protein; Validated |
2-68 |
1.61e-04 |
|
hypothetical protein; Validated
Pssm-ID: 180654 [Multi-domain] Cd Length: 341 Bit Score: 43.60 E-value: 1.61e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 754641310 2 TASLWQQCLNRLQDELPSAEFSMWIRPLQAELSDNTLTLYAPNRFVLDWVRDKYLIRVNGIINELCG 68
Cdd:PRK06672 191 SKTIWNKIKDKMQLKISRPSYETWVKETTARINEDSLIIYFENEFQQEWVKKSYKDLISQIAKELTG 257
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
114-226 |
1.91e-04 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 42.90 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 114 EPNHKSNTNVNYTFENfvEGKSNQLARAaaRQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIKESKKDAKVIYmhse 193
Cdd:PRK12377 65 QPLHRKCSFANYQVQN--DGQRYALSQA--KSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT---- 136
|
90 100 110
....*....|....*....|....*....|....*...
gi 754641310 194 rfVQDMVKALQN-----NAIEEFKRYYRSVDALLIDDI 226
Cdd:PRK12377 137 --VPDVMSRLHEsydngQSGEKFLQELCKVDLLVLDEI 172
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
124-226 |
7.67e-04 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 40.91 E-value: 7.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 124 NYTFENF-VEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIKESKKDAKVIYmhserfVQDMVKA 202
Cdd:PRK07952 68 NCSFENYrVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT------VADIMSA 141
|
90 100 110
....*....|....*....|....*....|
gi 754641310 203 LQ------NNAIEEFKRYYRSVDALLIDDI 226
Cdd:PRK07952 142 MKdtfsnsETSEEQLLNDLSNVDLLVIDEI 171
|
|
| PRK09087 |
PRK09087 |
hypothetical protein; Validated |
125-333 |
8.00e-03 |
|
hypothetical protein; Validated
Pssm-ID: 169652 [Multi-domain] Cd Length: 226 Bit Score: 37.73 E-value: 8.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 125 YTFENFVEGKSNqlarAAARQVADN-PGGAYNPLFLYGGTGLGKTHLlhavgNAIKESKKDAKVIymHSERFVQDMVKAL 203
Cdd:PRK09087 18 YGRDDLLVTESN----RAAVSLVDHwPNWPSPVVVLAGPVGSGKTHL-----ASIWREKSDALLI--HPNEIGSDAANAA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754641310 204 QNNAIeefkryyrsvdalLIDDIQffaNKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 283
Cdd:PRK09087 87 AEGPV-------------LIEDID---AGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEI 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 754641310 284 EPPELETRVAILMRKADENQIHLPDEVAFFIAKRLRsnvRELEgALNRVI 333
Cdd:PRK09087 151 GEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRME---RSLF-AAQTIV 196
|
|
| |
