|
Name |
Accession |
Description |
Interval |
E-value |
| algU |
PRK11923 |
RNA polymerase sigma factor AlgU; Provisional |
8-193 |
6.01e-115 |
|
RNA polymerase sigma factor AlgU; Provisional
Pssm-ID: 171347 [Multi-domain] Cd Length: 193 Bit Score: 324.83 E-value: 6.01e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 8 DEQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNY 87
Cdd:PRK11923 7 DQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDTAEAQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAINTAKNH 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 88 LTSQGRRPPSSDVEADEAESYGGGEALQEVSTPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDC 167
Cdd:PRK11923 87 LVSRGRRPPDSDVSSEDAEFYDGDHALKDIESPERALLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQC 166
|
170 180
....*....|....*....|....*.
gi 754642797 168 PVGTVRSRIFRAREAIDKKLQPLIEN 193
Cdd:PRK11923 167 PVGTVRSRIFRAREAIDKALQPLLQE 192
|
|
| RpoE_Sigma70 |
TIGR02939 |
RNA polymerase sigma factor RpoE; A sigma factor is a DNA-binding protein protein that binds ... |
1-191 |
8.03e-113 |
|
RNA polymerase sigma factor RpoE; A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.
Pssm-ID: 131985 [Multi-domain] Cd Length: 190 Bit Score: 319.47 E-value: 8.03e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 1 MSDQNLlDEQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIA 80
Cdd:TIGR02939 1 MSPQEL-DLELVERVQRGEKQAFDLLVRKYQHKVVALVGRYVRDSSEVEDVAQEAFVKAYRALSSFRGDSAFYTWLYRIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 81 VNTAKNYLTSQGRRPPSSDVEADEAESYGGGEALQEVSTPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEE 160
Cdd:TIGR02939 80 VNTAKNHLVAQGRRPPTSDVEIEDAEHFEGADRLREIDTPERLLLSRELEQTVMRAVEALPEDLRTAITLRELEGLSYED 159
|
170 180 190
....*....|....*....|....*....|.
gi 754642797 161 IAEIMDCPVGTVRSRIFRAREAIDKKLQPLI 191
Cdd:TIGR02939 160 IARIMDCPVGTVRSRIFRAREAIAIRLRPLL 190
|
|
| PRK09652 |
PRK09652 |
RNA polymerase sigma factor RpoE; Provisional |
12-193 |
2.95e-106 |
|
RNA polymerase sigma factor RpoE; Provisional
Pssm-ID: 236608 [Multi-domain] Cd Length: 182 Bit Score: 302.50 E-value: 2.95e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 12 VERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQ 91
Cdd:PRK09652 1 VERVQRGDRAAFALLVRRYQPRVKRLLSRLTRDPADAEDLVQETFIKAYRALHSFRGGAAFYTWLYRIARNTAINYLRKQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 92 GRRPPSSDVEADEAESYGGGEALQEVSTPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGT 171
Cdd:PRK09652 81 GRRPPASDVDAEEAEDFDLADALRDISTPENELLSAELEQRVRAAIESLPEELRTAITLREIEGLSYEEIAEIMGCPIGT 160
|
170 180
....*....|....*....|..
gi 754642797 172 VRSRIFRAREAIDKKLQPLIEN 193
Cdd:PRK09652 161 VRSRIFRAREALRAKLQPLLDE 182
|
|
| RpoE |
COG1595 |
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
8-192 |
1.28e-59 |
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 184.04 E-value: 1.28e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 8 DEQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNY 87
Cdd:COG1595 4 DEELLERLRAGDEAAFEELYERYRPRLYRYARRLLGDRADAEDLVQETFLRLWRKLDSFRGRGSFRAWLYRIARNLAIDH 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 88 LTSQGRRPPSSDVEADEAESygggealqEVSTPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDC 167
Cdd:COG1595 84 LRKRRRRRELLDELAEELPD--------EAADPEEALEAEELLEALLAALERLPPRQREVLVLRYLEGLSYAEIAEILGI 155
|
170 180
....*....|....*....|....*
gi 754642797 168 PVGTVRSRIFRAREAIDKKLQPLIE 192
Cdd:COG1595 156 SEGTVKSRLSRARKKLREALEEEGA 180
|
|
| PRK09641 |
PRK09641 |
RNA polymerase sigma factor SigW; Provisional |
5-190 |
2.97e-44 |
|
RNA polymerase sigma factor SigW; Provisional
Pssm-ID: 182012 [Multi-domain] Cd Length: 187 Bit Score: 145.22 E-value: 2.97e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 5 NLLDEQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTA 84
Cdd:PRK09641 2 DLLIKRLIKQVKKGDQNAFAELVDLYKDKIYQLCYRMLGNRHEAEDAAQEAFIRAYVNIDSYDINRKFSTWLYRIATNLT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 85 KNYLTsqgRRPPSSDVEADEAESYGGGEALQ---EVSTPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEI 161
Cdd:PRK09641 82 IDRLR---KRKPDYYLDAEVAGTEGLTMYSQlaaDDALPEEQVVSLELQETIQEAILQLPEKYRTVIVLKYIEDLSLKEI 158
|
170 180
....*....|....*....|....*....
gi 754642797 162 AEIMDCPVGTVRSRIFRAREAIDKKLQPL 190
Cdd:PRK09641 159 SEILDLPVGTVKTRIHRGREALRKQLRHL 187
|
|
| sigma70-ECF |
TIGR02937 |
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ... |
21-187 |
4.87e-42 |
|
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Pssm-ID: 274357 [Multi-domain] Cd Length: 158 Bit Score: 138.63 E-value: 4.87e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 21 AAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLtsqgRRPPSSDV 100
Cdd:TIGR02937 1 EAFEELYERYLPLVYRYARRYLGDDADAEDLVQEAFLKLLEALDRFDPEGSFKAWLFRIARNLILDYL----RRKRRLRR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 101 EADEAEsygggEALQEVSTPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAR 180
Cdd:TIGR02937 77 ELDLLE-----ELLDSDPSPEEELEQEEEREALREALEKLPEREREVLVLRYLEGLSYKEIAEILGISVGTVKRRLKRAR 151
|
....*..
gi 754642797 181 EAIDKKL 187
Cdd:TIGR02937 152 KKLRELL 158
|
|
| PRK11922 |
PRK11922 |
RNA polymerase sigma factor; Provisional |
8-189 |
2.25e-40 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237024 [Multi-domain] Cd Length: 231 Bit Score: 136.63 E-value: 2.25e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 8 DEQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNY 87
Cdd:PRK11922 17 DRELVARVLAGDEAAFEALMRRHNRRLYRTARAILRNDAEAEDVVQEAYLRAFRALGTFRGDASLSTWLSRIVLNEALGR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 88 LTSQGRRPPSsdVEADEAESYGGGEALQE---VSTPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEI 164
Cdd:PRK11922 97 LRRRRRLVNL--AEMVMASTIAGGERTPLadpAEDPERAAARREIRALLERAIDALPDAFRAVFVLRVVEELSVEETAQA 174
|
170 180
....*....|....*....|....*....
gi 754642797 165 MDCPVGTVRSRIFRAR----EAIDKKLQP 189
Cdd:PRK11922 175 LGLPEETVKTRLHRARrllrESLAREIGP 203
|
|
| SigW_bacill |
TIGR02948 |
RNA polymerase sigma-W factor; This sigma factor is restricted to certain lineages of the ... |
5-190 |
3.80e-39 |
|
RNA polymerase sigma-W factor; This sigma factor is restricted to certain lineages of the order Bacillales.
Pssm-ID: 131993 [Multi-domain] Cd Length: 187 Bit Score: 132.33 E-value: 3.80e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 5 NLLDEQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTA 84
Cdd:TIGR02948 2 DSIIKKRIKEVRKGDENAFADLVDLYKDKIYQLCYRMLGNVHEAEDVAQEAFIRAYTNIDTYDIQRKFSTWLYRIATNLT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 85 KNYLtsQGRRPpssDVEADeaESYGGGEAL-------QEVSTPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLS 157
Cdd:TIGR02948 82 IDRL--RKRKP---DFYLD--DEVQGTDGLtmesqlaADEAPPEDQVISLELRDTIQQEIQALPPKYRMVIVLKYMEDLS 154
|
170 180 190
....*....|....*....|....*....|...
gi 754642797 158 YEEIAEIMDCPVGTVRSRIFRAREAIDKKLQPL 190
Cdd:TIGR02948 155 LKEISEILDLPVGTVKTRIHRGREALRKQLRHL 187
|
|
| PRK11924 |
PRK11924 |
RNA polymerase sigma factor; Provisional |
9-188 |
6.65e-36 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183384 [Multi-domain] Cd Length: 179 Bit Score: 123.54 E-value: 6.65e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 9 EQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYL 88
Cdd:PRK11924 1 GQLMPVDATGDKEAFSELFRPHAPDLLRYARRQLGDRALAEDAVQEAFLRAWRKADLFNGKGSARTWLLTIARNVCYDLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 89 TSQGRRPPSSDVEADEAESYGGGEalqevsTPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCP 168
Cdd:PRK11924 81 RRRRREKAVLSDDALEPEFAETAE------TPEAALLAKDDLARIDRCLDALPVKQREVFLLRYVEGLSYREIAEILGVP 154
|
170 180
....*....|....*....|
gi 754642797 169 VGTVRSRIFRAREAIDKKLQ 188
Cdd:PRK11924 155 VGTVKSRLRRARQLLRECLE 174
|
|
| PRK12518 |
PRK12518 |
RNA polymerase sigma factor; Provisional |
11-188 |
1.11e-34 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237124 [Multi-domain] Cd Length: 175 Bit Score: 120.59 E-value: 1.11e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 11 LVERVQRGDKAAFNLLVKKYQHKVVNLVARyVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTS 90
Cdd:PRK12518 1 LILRCQRGDRQSFRQLYRRYQQKVRSTLYQ-LCGRELLDDLVQEVFLRVWKGLPKLRNPAYFSTWLYRITWNVATDARRQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 91 QGRRPpsSDVEADEAEsygggEALQEVSTPENLA---LTDEIKRtvfaAIEALPEDLRTAITLRELEGLSYEEIAEIMDC 167
Cdd:PRK12518 80 FAQRP--SRIQDDSLN-----DQPSRPSDTPDLMqlhYQDLVQQ----GLQTLSLEHRAVLVLHDLEDLPQKEIAEILNI 148
|
170 180
....*....|....*....|.
gi 754642797 168 PVGTVRSRIFRAREAIDKKLQ 188
Cdd:PRK12518 149 PVGTVKSRLFYARRQLRKFLQ 169
|
|
| PRK09638 |
PRK09638 |
RNA polymerase sigma factor SigY; Reviewed |
8-187 |
2.71e-34 |
|
RNA polymerase sigma factor SigY; Reviewed
Pssm-ID: 182010 [Multi-domain] Cd Length: 176 Bit Score: 119.35 E-value: 2.71e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 8 DEQLVERVQRGDKAAFNLLVKKYqhkvVNLVARYV----NNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNT 83
Cdd:PRK09638 5 EKELIQKAKKGDDAALTTLFQQH----YSFLYKYLlkltLDPDLAEDLVQETMLKAIENLSSFQGRSKFSTWLISIASRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 84 AKNYLTSQGRRPPSSDVEADEAESYGGGEAlqevstpenlALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAE 163
Cdd:PRK09638 81 YKDHLRKQKREKLRLQRAKEETLRKEKWEA----------AIKGAEWSEMLDALSKLDPEFRAPVILKHYYGYTYEEIAK 150
|
170 180
....*....|....*....|....
gi 754642797 164 IMDCPVGTVRSRIFRAREAIDKKL 187
Cdd:PRK09638 151 MLNIPEGTVKSRVHHGIKQLRKEW 174
|
|
| PRK12513 |
PRK12513 |
RNA polymerase sigma factor; Provisional |
8-185 |
5.16e-32 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183566 [Multi-domain] Cd Length: 194 Bit Score: 114.02 E-value: 5.16e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 8 DEQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNY 87
Cdd:PRK12513 13 DEALMLRYRAGDAAAFEALYARHRTGLYRFLLRLARDRALAEDIFQETWLRVIRARAQYQPRARFRTWLYQIARNLLIDH 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 88 LTSQGRRPPSSDvEADEAESYGGGEALQevstPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDC 167
Cdd:PRK12513 93 WRRHGARQAPSL-DADEQLHALADDGAA----PEQQLSLFRDRRRLQAALETLPDEQREVFLLREHGDLELEEIAELTGV 167
|
170
....*....|....*...
gi 754642797 168 PVGTVRSRIfraREAIDK 185
Cdd:PRK12513 168 PEETVKSRL---RYALQK 182
|
|
| PRK09415 |
PRK09415 |
RNA polymerase factor sigma C; Reviewed |
7-188 |
4.76e-30 |
|
RNA polymerase factor sigma C; Reviewed
Pssm-ID: 181835 [Multi-domain] Cd Length: 179 Bit Score: 108.68 E-value: 4.76e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 7 LDEQLVERVQRGDK-AAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAK 85
Cdd:PRK09415 1 MEELTIEAFEIEDKeDLIDEIMNEYGQEVLQLVYSYVKNKEVAEDLTQEIFVKCYKSLHTYKGKSSLKTWLYRIAINHCK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 86 NYLTS-QGRRPPSSDVEADEAESygggealQEVSTPENLALTDEIKRTVfAAIEALPEDLRTAITLRELEGLSYEEIAEI 164
Cdd:PRK09415 81 DYLKSwHNKKVIVTEDIFTYMES-------QKESVEEEVIQNAEDERLA-SAVMSLPIKYREVIYLFYYEELSIKEIAEV 152
|
170 180
....*....|....*....|....
gi 754642797 165 MDCPVGTVRSRIFRAREAIDKKLQ 188
Cdd:PRK09415 153 TGVNENTVKTRLKKAKELLKKGLE 176
|
|
| PRK09643 |
PRK09643 |
RNA polymerase sigma factor SigM; Reviewed |
1-192 |
1.39e-29 |
|
RNA polymerase sigma factor SigM; Reviewed
Pssm-ID: 236604 [Multi-domain] Cd Length: 192 Bit Score: 107.87 E-value: 1.39e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 1 MSDQNLLDEQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIA 80
Cdd:PRK09643 7 VGFGERSDAELLAAHVAGDRYAFGELFRRHHRRLWAVARRTSGTREDAADALQDAMLSAHRAAGSFRGDAAVSSWLHRIV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 81 VNTAKNYLTSQGRRPPSSdveADEAESYGggealqevSTPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEE 160
Cdd:PRK09643 87 VNACLDRLRRAKARPTVP---LDDVYPVA--------QLERDPTARVETALAVQRALMRLPVEQRAALVAVDMQGYSVAD 155
|
170 180 190
....*....|....*....|....*....|..
gi 754642797 161 IAEIMDCPVGTVRSRIFRAReaidKKLQPLIE 192
Cdd:PRK09643 156 AARMLGVAEGTVKSRCARGR----ARLAELLG 183
|
|
| PRK12533 |
PRK12533 |
RNA polymerase sigma factor; Provisional |
21-183 |
1.77e-27 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237129 [Multi-domain] Cd Length: 216 Bit Score: 102.89 E-value: 1.77e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 21 AAFNLlvkkyqhkvvnlvARYV-NNPGDVPDVAQEAFIKAYRALPTFRGESAfYTWLYRIAVNTaknYLTSQGRRPPSSD 99
Cdd:PRK12533 30 AAYNL-------------ARWLcGNASDADDVVQEACMRALRFFDSFRGDNA-RPWLLAIVRHT---WYSEWRRRANAHE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 100 VEA-DEAESYGGGEALQEVST-PENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIF 177
Cdd:PRK12533 93 VAApDTLDDADSLDDWQPAGEdPLALLLRAEDVRLVNAALAKLPVEYREVLVLRELEDMSYREIAAIADVPVGTVMSRLA 172
|
....*.
gi 754642797 178 RAREAI 183
Cdd:PRK12533 173 RARRRL 178
|
|
| Sig70_famx3 |
TIGR02954 |
RNA polymerase sigma-70 factor, TIGR02954 family; This group of sigma factors are members of ... |
8-188 |
7.03e-27 |
|
RNA polymerase sigma-70 factor, TIGR02954 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Pssm-ID: 213752 [Multi-domain] Cd Length: 169 Bit Score: 100.17 E-value: 7.03e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 8 DEQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNY 87
Cdd:TIGR02954 3 DEELVKKAKRGNKPAFESLIKKHKEKLYKTAFIYVKNEHDALDVIQETVYKAYLSIDKLKHPKYFNTWLTRILINECIDL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 88 LTSQGRRPPssdveADEAESYGGGEalQEVSTPENLALtdeikrtvFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDC 167
Cdd:TIGR02954 83 LKKKKKVIP-----FDPNTSIEKGE--CETHADSRLDL--------YKAIDTLNDKYQTAIILRYYHDLTIKEIAEVMNK 147
|
170 180
....*....|....*....|.
gi 754642797 168 PVGTVRSRIFRAREAIDKKLQ 188
Cdd:TIGR02954 148 PEGTVKTYLHRALKKLKKRLE 168
|
|
| PRK05602 |
PRK05602 |
RNA polymerase sigma factor; Reviewed |
8-187 |
1.30e-26 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 235530 [Multi-domain] Cd Length: 186 Bit Score: 100.11 E-value: 1.30e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 8 DEQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFR-GESAFYTWLYRIAVNTAKN 86
Cdd:PRK05602 7 DEELLARVAAGDPAAFRVLVARKLPRLLALATRMLGDPAEAEDVAQETFLRIWKQAPSWRpGEARFDTWLHRVVLNLCYD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 87 YLtsqgRRPPSSDVE-ADEAESYGGGealqevstPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIM 165
Cdd:PRK05602 87 RL----RRRREVPVEdAPDVPDPAPG--------PDAGLEARQRARRVEQALAALPERQREAIVLQYYQGLSNIEAAAVM 154
|
170 180
....*....|....*....|..
gi 754642797 166 DCPVGTVRSRIFRAREAIDKKL 187
Cdd:PRK05602 155 DISVDALESLLARGRRALRAQL 176
|
|
| Sig70_bacteroi1 |
TIGR02985 |
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors ... |
22-187 |
6.31e-25 |
|
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Pssm-ID: 274376 [Multi-domain] Cd Length: 161 Bit Score: 94.94 E-value: 6.31e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 22 AFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGRRPPSSDVE 101
Cdd:TIGR02985 2 AFEQLYRRYYPKLCAFARRYVKDEEDAEDIVQDVFLKLWENRETLEISESIKAYLFTIVKNRCLNYLRHKQVEEKYQEEL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 102 ADEAESYgggealQEVSTPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRARE 181
Cdd:TIGR02985 82 AEIEERE------LSEADPEEELEAKELEEIIEEAIEKLPEQCREIFILSRFEGLSNKEIAEELGISVKTVEYHITKALK 155
|
....*.
gi 754642797 182 AIDKKL 187
Cdd:TIGR02985 156 FLRKEL 161
|
|
| PRK09649 |
PRK09649 |
RNA polymerase sigma factor SigC; Reviewed |
17-183 |
4.95e-24 |
|
RNA polymerase sigma factor SigC; Reviewed
Pssm-ID: 137458 [Multi-domain] Cd Length: 185 Bit Score: 93.18 E-value: 4.95e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 17 RGDKAAFNLLVKKYQHKVVNLVArYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGRRPP 96
Cdd:PRK09649 20 KGNGRALEAFIKATQQDVWRFVA-YLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPR 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 97 SS-----DVEADEAESYGGGEALQEVSTpenlaltdeikrtvfaAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGT 171
Cdd:PRK09649 99 TTrgarpEHLIDGDRHARGFEDLVEVTT----------------MIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGT 162
|
170
....*....|..
gi 754642797 172 VRSRIFRAREAI 183
Cdd:PRK09649 163 IRSRVARARDAL 174
|
|
| PRK09637 |
PRK09637 |
RNA polymerase sigma factor SigZ; Provisional |
29-193 |
1.74e-23 |
|
RNA polymerase sigma factor SigZ; Provisional
Pssm-ID: 236601 [Multi-domain] Cd Length: 181 Bit Score: 91.58 E-value: 1.74e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 29 KYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGRRppssdvEADEAESY 108
Cdd:PRK09637 9 EYKAQLKAFLHSRVSNEADVDDLLQEVLIKTHSNLHSLKDGSSIKSWLYQIANNTIIDFYRKKNRS------EELPDDLL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 109 GGGEALQEvstpenlALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAReaidKKLQ 188
Cdd:PRK09637 83 FEDEEREE-------NAKKELAPCLRPFIDALPEKYAEALRLTELEGLSQKEIAEKLGLSLSGAKSRVQRGR----VKLK 151
|
....*
gi 754642797 189 PLIEN 193
Cdd:PRK09637 152 ELLEG 156
|
|
| PRK12515 |
PRK12515 |
RNA polymerase sigma factor; Provisional |
1-191 |
4.58e-23 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183567 [Multi-domain] Cd Length: 189 Bit Score: 90.95 E-value: 4.58e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 1 MSDQNLLDEQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIA 80
Cdd:PRK12515 2 IAAQATTDEMLLARIAQGDRTAMQTLYGRHHVRVYRFGLRLVRDEQTAEDLVSEVFLDVWRQAGQFEGRSQVSTWLLSIA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 81 VNTAKNYLtsqgRRPPSSDVEADEAESYGGGEALQEVSTPEnlALTDEIKRtvfAAIEALPEDLRTAITLRELEGLSYEE 160
Cdd:PRK12515 82 RFKALSAL----RRRKHEEIDDEAAAAIEDGADTPEVALQK--SDTSAALR---ACLAKLSPAHREIIDLVYYHEKSVEE 152
|
170 180 190
....*....|....*....|....*....|.
gi 754642797 161 IAEIMDCPVGTVRSRIFRAReaidKKLQPLI 191
Cdd:PRK12515 153 VGEIVGIPESTVKTRMFYAR----KKLAELL 179
|
|
| PRK09647 |
PRK09647 |
RNA polymerase sigma factor SigE; Reviewed |
26-188 |
5.85e-22 |
|
RNA polymerase sigma factor SigE; Reviewed
Pssm-ID: 236606 [Multi-domain] Cd Length: 203 Bit Score: 88.30 E-value: 5.85e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 26 LVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRgESAFYTWLYRIAVNtaknYLTSQGRRPPSSDVEA--D 103
Cdd:PRK09647 33 LVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSLQNYQ-PGTFEGWLHRITTN----LFLDMVRRRARIRMEAlpE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 104 EAESYGGGEAlqevsTPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAI 183
Cdd:PRK09647 108 DYDRVPGDEP-----NPEQIYHDARLDPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIAATLGVKLGTVRSRIHRGRQQL 182
|
....*
gi 754642797 184 DKKLQ 188
Cdd:PRK09647 183 RAALA 187
|
|
| PRK12524 |
PRK12524 |
RNA polymerase sigma factor; Provisional |
8-189 |
1.06e-21 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183573 [Multi-domain] Cd Length: 196 Bit Score: 87.64 E-value: 1.06e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 8 DEQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFR-GESAFYTWLYRIAVNTAKN 86
Cdd:PRK12524 13 DEALLVLYANGDPAAARALTLRLAPRALAVATRVLGDRAEAEDVTQEAMLRLWRIAPDWRqGEARVSTWLYRVVCNLCTD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 87 YLTSQGRRPPSSDVEADEAESYGGG-EALQEVSTPENLAltdeikrtvfAAIEALPEDLRTAITLRELEGLSYEEIAEIM 165
Cdd:PRK12524 93 RLRRRRRASVDLDDAPEPADAAPGAeEALIEGDRMRALD----------AALAALPERQRQAVVLRHIEGLSNPEIAEVM 162
|
170 180
....*....|....*....|....
gi 754642797 166 DCPVGTVRSRIFRAREAIDKKLQP 189
Cdd:PRK12524 163 EIGVEAVESLTARGKRALAALLAG 186
|
|
| PRK09639 |
PRK09639 |
RNA polymerase sigma factor SigX; Provisional |
23-192 |
1.39e-21 |
|
RNA polymerase sigma factor SigX; Provisional
Pssm-ID: 236602 [Multi-domain] Cd Length: 166 Bit Score: 86.54 E-value: 1.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 23 FNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRAlpTFRGESAFYTWLYRIAVNTAKNYLTSQGRRPPSSDVEA 102
Cdd:PRK09639 5 FEDLFEQYYPDVVQQIFYIVKDRTQAEDLAQEVFLRLYRS--DFKGIENEKGWLIKSARNVAYNYLRSEKRRRARILGEF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 103 DEAEsygggeaLQEVSTPENLALTDEIKRTVFAAIEALPEDLRTAITLRElEGLSYEEIAEIMDCPVGTVRSRIFRAREA 182
Cdd:PRK09639 83 QWQE-------VDNEPSPEEIWIRKEEITKVQEVLAKMTERDRTVLLLRF-SGYSYKEIAEALGIKESSVGTTLARAKKK 154
|
170
....*....|
gi 754642797 183 IDKKLQPLIE 192
Cdd:PRK09639 155 FRKIYEQMEE 164
|
|
| PRK12543 |
PRK12543 |
RNA polymerase sigma factor; Provisional |
18-188 |
1.70e-21 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183582 [Multi-domain] Cd Length: 179 Bit Score: 86.33 E-value: 1.70e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 18 GDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGRRPPS 97
Cdd:PRK12543 4 GDQEAFSEIYDVTIQEVYKTVHFLVEDKQDVDDVVNEIYIQLWESLRKYDSNRPFRFWLIGLVIKQIHSWRRKRWRRFRI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 98 SDVEADEAESygggealQEVSTPENLaLTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIF 177
Cdd:PRK12543 84 FEKAEEQRKP-------VSIDFSEDV-LSKESNQELIELIHKLPYKLRQVIILRYLHDYSQEEIAQLLQIPIGTVKSRIH 155
|
170
....*....|.
gi 754642797 178 RAREAIDKKLQ 188
Cdd:PRK12543 156 AALKKLRQKEQ 166
|
|
| SigX5 |
TIGR02960 |
RNA polymerase sigma-70 factor, TIGR02960 family; This group of sigma factors are members of ... |
18-187 |
1.47e-20 |
|
RNA polymerase sigma-70 factor, TIGR02960 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Pssm-ID: 132005 [Multi-domain] Cd Length: 324 Bit Score: 86.84 E-value: 1.47e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 18 GDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGRRPPS 97
Cdd:TIGR02960 2 VDGAAFTALAEPHRRELLAHCYRMLGSLHEAEDLVQETLLRAWRARDRFEGRSSVRTWLYRIATNACLDALEARQRRPRP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 98 SDVEADEAEsygGGEALQE---------------------VSTPENLALTDEIKRTVF-AAIEALPEDLRTAITLRELEG 155
Cdd:TIGR02960 82 VGLGAPSAD---GTAAASEaaevtwleplpdltldlddpaAADPSVAAGSRESVRLAFvAAIQYLPPRQRAVLLLRDVLG 158
|
170 180 190
....*....|....*....|....*....|..
gi 754642797 156 LSYEEIAEIMDCPVGTVRSRIFRAREAIDKKL 187
Cdd:TIGR02960 159 WRAAETAELLGTSTASVNSALQRARATLDEVG 190
|
|
| SigM_subfam |
TIGR02950 |
RNA polymerase sigma factor, SigM family; This family of RNA polymerase sigma factors is a ... |
50-187 |
1.48e-20 |
|
RNA polymerase sigma factor, SigM family; This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot:
Pssm-ID: 274361 [Multi-domain] Cd Length: 154 Bit Score: 83.27 E-value: 1.48e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 50 DVAQEAFIKAYRALPTFRGESaFYTWLYRIAVNTAKNYLTSQGRRPPSSDVEADEAEsygggeaLQEVSTPENLALTDEI 129
Cdd:TIGR02950 24 DLLQETFLKAYIHLHSFKDSS-IKPWLFRIARNAFIDWYRKDKKIQTIDDDAIGDLE-------QHPVESPEHHLLIKIE 95
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 754642797 130 KRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAIDKKL 187
Cdd:TIGR02950 96 QEEITHHLSRLPENYRTVLILREFKEFSYKEIAELLNLSLAKVKSNLFRARKELKKLL 153
|
|
| PRK08241 |
PRK08241 |
RNA polymerase subunit sigma-70; |
14-184 |
1.95e-20 |
|
RNA polymerase subunit sigma-70;
Pssm-ID: 236196 [Multi-domain] Cd Length: 339 Bit Score: 86.91 E-value: 1.95e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 14 RVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGR 93
Cdd:PRK08241 12 RAAAGDRDAFAALVEPHRRELLAHCYRMLGSVHDAEDAVQETLLRAWRGYDRFEGRSSLRTWLYRIATNVCLDALEGRAR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 94 RPPSSDVEADEAESYGGGEALQEV---------------STPENLALTDEIKRTVF-AAIEALPEDLRTAITLRELEGLS 157
Cdd:PRK08241 92 RPLPTDLGAPAADPVDELVERPEVpwlepypdalldpaaADPAARVVARESVRLAFvAALQHLPPRQRAVLILRDVLGWS 171
|
170 180
....*....|....*....|....*..
gi 754642797 158 YEEIAEIMDCPVGTVRSRIFRAREAID 184
Cdd:PRK08241 172 AAEVAELLDTSVAAVNSALQRARATLA 198
|
|
| PRK12535 |
PRK12535 |
RNA polymerase sigma factor; Provisional |
10-180 |
8.78e-20 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237130 [Multi-domain] Cd Length: 196 Bit Score: 82.64 E-value: 8.78e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 10 QLVERVQRGDKAAFNLLVKKYQHKVVNLVArYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLT 89
Cdd:PRK12535 14 DLALAAGRGDRAALTEFIRETQDDVWRLLA-HLGGHDIADDLTQETYLRVMSALPRFAARSSARTWLLSLARRVWVDNIR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 90 SQGRRPPSSDVEADEAesygggeALQEVSTPENLALTDEIKrtVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPV 169
Cdd:PRK12535 93 HDMARPRKSATEYEDA-------AATTASNETTGSWSEWID--VRTLIDALPPERREALILTQVLGYTYEEAAKIADVRV 163
|
170
....*....|.
gi 754642797 170 GTVRSRIFRAR 180
Cdd:PRK12535 164 GTIRSRVARAR 174
|
|
| PRK12538 |
PRK12538 |
RNA polymerase sigma factor; Provisional |
8-188 |
1.58e-18 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139048 [Multi-domain] Cd Length: 233 Bit Score: 79.90 E-value: 1.58e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 8 DEQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYralpTFRGE-----SAFYTWLYRIAVN 82
Cdd:PRK12538 50 DEELLDRLATDDEAAFRLLVERHIDRAYAIALRIVGNRADAEDVVQDTMLKVW----THRGRwqhgrAKFSTWLYRVVSN 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 83 TAKNYltsqGRRPPSSDVEADEAESYGGGEAlqeVSTPENlaltDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIA 162
Cdd:PRK12538 126 RCIDL----RRKPRTENVDAVPEVADGKPDA---VSVIER----NELSDLLEAAMQRLPEQQRIAVILSYHENMSNGEIA 194
|
170 180
....*....|....*....|....*.
gi 754642797 163 EIMDCPVGTVRSRIFRAREAIDKKLQ 188
Cdd:PRK12538 195 EVMDTTVAAVESLLKRGRQQLRDLLR 220
|
|
| Sigma70_r2 |
pfam04542 |
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. ... |
26-94 |
1.82e-18 |
|
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation.
Pssm-ID: 427998 [Multi-domain] Cd Length: 71 Bit Score: 75.32 E-value: 1.82e-18
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 754642797 26 LVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGE--SAFYTWLYRIAVNTAKNYLTSQGRR 94
Cdd:pfam04542 1 LVERYLPLVYSLARRYLGDGADAEDLVQEGFLGLWRAIERFDPErgVSFSTWLYTIIRNAIIDYLRKQRRT 71
|
|
| PRK12514 |
PRK12514 |
RNA polymerase sigma factor; Provisional |
9-179 |
2.78e-18 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105710 [Multi-domain] Cd Length: 179 Bit Score: 77.94 E-value: 2.78e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 9 EQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFR-GESAFYTWLYRIAVNTAKNY 87
Cdd:PRK12514 7 EKLIVRVSLGDRDAFSSLYDATSAKLFGICLRVLKDRSEAEEALQDVYVKIWTKADRFAvSGLSPMTWLITIARNHAIDR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 88 LtsQGRRPPSSDVeaDEAesyggGEALQEVSTPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDC 167
Cdd:PRK12514 87 L--RARKAVAVDI--DEA-----HDLADPSPGPEAEVIAGDEGQRIDACLEELEKDRAAAVRRAYLEGLSYKELAERHDV 157
|
170
....*....|..
gi 754642797 168 PVGTVRSRIFRA 179
Cdd:PRK12514 158 PLNTMRTWLRRS 169
|
|
| PRK09640 |
PRK09640 |
RNA polymerase sigma factor SigX; Reviewed |
6-192 |
3.90e-18 |
|
RNA polymerase sigma factor SigX; Reviewed
Pssm-ID: 236603 [Multi-domain] Cd Length: 188 Bit Score: 78.06 E-value: 3.90e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 6 LLDEQLVERVQRG---DKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVN 82
Cdd:PRK09640 8 LNDEELVARVHVElfhVTRAYEELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSITYN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 83 TAKNYLTSQGRRPPSSDveadeAESYgggEALQEVStpENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIA 162
Cdd:PRK09640 88 ECITQYRKERRKRRLMD-----ALSL---DPLEEAS--EEKAPKPEERGGLDRWLVHVNPIDREILVLRFVAELEFQEIA 157
|
170 180 190
....*....|....*....|....*....|
gi 754642797 163 EIMDCPVGTVRSRIFRAREAIDKKLQPLIE 192
Cdd:PRK09640 158 DIMHMGLSATKMRYKRALDKLREKFAGLAE 187
|
|
| SigE-fam_strep |
TIGR02983 |
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors ... |
22-182 |
6.87e-18 |
|
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Pssm-ID: 132028 [Multi-domain] Cd Length: 162 Bit Score: 76.66 E-value: 6.87e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 22 AFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAknylTSQGRRPPSSDVE 101
Cdd:TIGR02983 7 EFTAFVAARYPRLLRTAYLLTGDPHEAEDLVQEALVRTYVRWDRIRDPDAPDAYVRRVLVNLA----RSRWRRRRLLELP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 102 ADEaesygggeaLQEVSTPENLALTDEiKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRARE 181
Cdd:TIGR02983 83 TRE---------LPDAAAPDPAPDVAL-RAALARALRRLPARQRAVVVLRYYEDLSEAQVAEALGISVGTVKSRLSRALA 152
|
.
gi 754642797 182 A 182
Cdd:TIGR02983 153 R 153
|
|
| Sig-70_gvs1 |
TIGR02989 |
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family; This group of sigma ... |
22-180 |
4.79e-17 |
|
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).
Pssm-ID: 274379 [Multi-domain] Cd Length: 159 Bit Score: 74.28 E-value: 4.79e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 22 AFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGRRPPSSDVE 101
Cdd:TIGR02989 2 AFVRLLTRHERALRAFVRSLVADRDDVDDVLQETFVVAWRKFDQFDPGTNFVAWARGIARNKVLNYRRKLGRDRLVFDDD 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 754642797 102 ADeaesygggEALQEVSTPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAR 180
Cdd:TIGR02989 82 LL--------EALAAEAEPTEAERLSDDRQALEGCLEKLPERQRELLDLRYQRGQKATALAEQTGRTVNAVYKALQRIR 152
|
|
| Sigma70_r4_2 |
pfam08281 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
135-183 |
5.51e-17 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.
Pssm-ID: 400535 [Multi-domain] Cd Length: 54 Bit Score: 71.33 E-value: 5.51e-17
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 754642797 135 AAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAI 183
Cdd:pfam08281 6 RALEELPPRQREVFLLRYLEGLSYAEIAELLGISEGTVKSRLSRARKKL 54
|
|
| PRK12519 |
PRK12519 |
RNA polymerase sigma factor; Provisional |
8-192 |
1.23e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237125 [Multi-domain] Cd Length: 194 Bit Score: 71.24 E-value: 1.23e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 8 DEQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNY 87
Cdd:PRK12519 16 DAELFSALKAGQSAALGVLYDRHAGLVYGLALKILGNSQEAEDLTQEIFLSLWRKSSYDPKRGSLSSYLLTLTRSRAIDR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 88 LTSQGRRppSSDVEAdeaesyGGGEALQEVSTP---ENLALtDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEI 164
Cdd:PRK12519 96 LRSRRSR--QRLLER------WQQELLGEASEDtplEQASL-AERSQRVQTALAQLPESQRQVLELAYYEGLSQSEIAKR 166
|
170 180
....*....|....*....|....*...
gi 754642797 165 MDCPVGTVRSRIFRAREAIDKKLQPLIE 192
Cdd:PRK12519 167 LGIPLGTVKARARQGLLKLRELLQDLLE 194
|
|
| PRK12522 |
PRK12522 |
RNA polymerase sigma factor; Provisional |
26-188 |
5.17e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183571 [Multi-domain] Cd Length: 173 Bit Score: 69.51 E-value: 5.17e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 26 LVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGRRppsSDVEADEA 105
Cdd:PRK12522 8 LIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSSRHQLSYVENYKKWITTICVRTFYDFYRKKKRW---KDRILDLF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 106 ESYGGGEAL--QEVSTPENLALTDEiKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAI 183
Cdd:PRK12522 85 HKEDGGEIEfaDDVNISEEFIQKVE-AEMIREVIQLLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAKKQM 163
|
....*
gi 754642797 184 DKKLQ 188
Cdd:PRK12522 164 REHLE 168
|
|
| Sigma70_r4 |
cd06171 |
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in ... |
130-183 |
6.47e-15 |
|
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplasmic stress and pathogenesis. Ec sigmaE SR4 also contacts the -35 element, but recognizes a different consensus (a 7-base-pair GGAACTT). Plant SFs recognize sigma70 type promoters and direct transcription of the major plastid RNA polymerase, plastid-encoded RNA polymerase (PEP).
Pssm-ID: 100119 [Multi-domain] Cd Length: 55 Bit Score: 65.97 E-value: 6.47e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 754642797 130 KRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAI 183
Cdd:cd06171 1 RERLEEALDKLPEREREVILLRFGEGLSYEEIAEILGISRSTVRQRLHRALKKL 54
|
|
| PRK08295 |
PRK08295 |
RNA polymerase sporulation sigma factor SigH; |
5-188 |
2.57e-14 |
|
RNA polymerase sporulation sigma factor SigH;
Pssm-ID: 181361 [Multi-domain] Cd Length: 208 Bit Score: 68.01 E-value: 2.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 5 NLLDEQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRG--ESAFYTWLYRI--- 79
Cdd:PRK08295 8 ELEDEELVELARSGDKEALEYLIEKYKNFVRAKARSYFLIGADREDIVQEGMIGLYKAIRDYDKdkLSSFKSFAELCitr 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 80 AVNTAKNYLTSQGRRPPSSDVE-----ADEAESYGGGEALQE--VSTPENLALTDEIKRTVFAAIEALPEDLRTAITLRE 152
Cdd:PRK08295 88 QIITAIKTANRQKHIPLNSYVSldkpiYDEESDRTLLDVISEakVTDPEELIISKEELEDIEEKIEELLSELEKEVLELY 167
|
170 180 190
....*....|....*....|....*....|....*.
gi 754642797 153 LEGLSYEEIAEIMDCPVGTVRSRIFRAREAIDKKLQ 188
Cdd:PRK08295 168 LDGKSYQEIAEELNRHVKSIDNALQRVKRKLEKYLE 203
|
|
| PRK12516 |
PRK12516 |
RNA polymerase sigma factor; Provisional |
50-188 |
6.05e-14 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183568 [Multi-domain] Cd Length: 187 Bit Score: 66.91 E-value: 6.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 50 DVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGRRPPSSD-----VEADEAESYGggealqevstpeNLA 124
Cdd:PRK12516 39 DLVQDTIMKAWAKQDHFEVGTNMKAWLFTILRNEFYSQMRKRGREVQDTDgmfteQLAVHPSQYG------------TLD 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 754642797 125 LTDeikrtVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAIDKKLQ 188
Cdd:PRK12516 107 LQD-----FRAALDQLPDDQREAIILVGASGFAYEEAAEICGCAVGTIKSRVNRARQRLQEILQ 165
|
|
| PRK09646 |
PRK09646 |
ECF RNA polymerase sigma factor SigK; |
9-176 |
1.01e-13 |
|
ECF RNA polymerase sigma factor SigK;
Pssm-ID: 182015 [Multi-domain] Cd Length: 194 Bit Score: 66.23 E-value: 1.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 9 EQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTF---RGeSAFyTWL----YRIAV 81
Cdd:PRK09646 18 DALLRRVARGDQDAFAELYDRTSSRVYGLVRRVLRDPGYSEETTQEVYLEVWRTASRFdpaRG-SAL-AWLltlaHRRAV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 82 NTAKNYLTSQGR--------RPPSSDVEADEAEsygggealqevstpenlaLTDEiKRTVFAAIEALPEDLRTAITLREL 153
Cdd:PRK09646 96 DRVRSEQAASQRevrygarnVDPAFDQVAEEVE------------------ARLE-RERVRDCLDALTDTQRESVTLAYY 156
|
170 180
....*....|....*....|...
gi 754642797 154 EGLSYEEIAEIMDCPVGTVRSRI 176
Cdd:PRK09646 157 GGLTYREVAERLAVPLGTVKTRM 179
|
|
| PRK12534 |
PRK12534 |
RNA polymerase sigma factor; Provisional |
10-179 |
1.14e-13 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183576 [Multi-domain] Cd Length: 187 Bit Score: 66.23 E-value: 1.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 10 QLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAF-YTWLYRIAVNTAKNYL 88
Cdd:PRK12534 14 RLLTATAGGDRHAFEALYRQTSPKLFGVCLRMIPQRAEAEEVLQDVFTLIWHKAGQFDPSRARgLTWLAMIARNKAIDHL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 89 tsQGRRPPSSDVEADEAesyggGEALQEVSTPenLALTDEI---KRTVFAAIEALP---EDLRTAItlreLEGLSYEEIA 162
Cdd:PRK12534 94 --RANAPQRRNVALDDA-----GELRAADASP--LERTERAstrRRIDHCLAELEPprsELIRTAF----FEGITYEELA 160
|
170
....*....|....*..
gi 754642797 163 EIMDCPVGTVRSRIFRA 179
Cdd:PRK12534 161 ARTDTPIGTVKSWIRRG 177
|
|
| PRK09642 |
PRK09642 |
RNA polymerase sigma factor; |
27-185 |
1.18e-13 |
|
RNA polymerase sigma factor;
Pssm-ID: 170031 [Multi-domain] Cd Length: 160 Bit Score: 65.51 E-value: 1.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 27 VKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPT--FRGesaFYTWLYRIAVNTAKNYLTSQGRRPPSSDVeADE 104
Cdd:PRK09642 1 MQTYRHYIFQVIFSILRHEEDAKDVTQEVFVKIHASLPNyqFRG---LKTWMARIATNHAIDYKRKKARENEELSL-CKE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 105 AEsygggEALQEVSTPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAID 184
Cdd:PRK09642 77 TE-----ENIKSSHNIEDLLLTKEQKLLIAQKLRELPENYRDVVLAHYLEEKSYQEIALQEKIEVKTVEMKLYRARKWIK 151
|
.
gi 754642797 185 K 185
Cdd:PRK09642 152 K 152
|
|
| PRK12531 |
PRK12531 |
RNA polymerase sigma factor; Provisional |
12-185 |
1.23e-13 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105726 [Multi-domain] Cd Length: 194 Bit Score: 66.11 E-value: 1.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 12 VERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGE-SAFYTWLYRIAVNTAKNYLTS 90
Cdd:PRK12531 18 MEKVKSRDKQAFALVFSYYAPKLKQFAMKHVGNEQVAMEMVQETMSTVWQKAHLFDGQkSALSTWIYTIIRNLCFDLLRK 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 91 QgrRPPSSDVEADE--AESYGGGEALQEVStPENlaltDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCP 168
Cdd:PRK12531 98 Q--KGKDLHIHADDiwPSDYYPPDLVDHYS-PEQ----DMLKEQVMKFLDRLPKAQRDVLQAVYLEELPHQQVAEMFDIP 170
|
170
....*....|....*..
gi 754642797 169 VGTVRSRIfraREAIDK 185
Cdd:PRK12531 171 LGTVKSRL---RLAVEK 184
|
|
| PRK12532 |
PRK12532 |
RNA polymerase sigma factor; Provisional |
43-188 |
2.16e-13 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171564 [Multi-domain] Cd Length: 195 Bit Score: 65.34 E-value: 2.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 43 NNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGRRPPSSDVEADEA--ESY-----GGGEALQ 115
Cdd:PRK12532 28 DHPDLAEDLVQETLLSAYSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRKVFTLLDDELldEAFeshfsQNGHWTP 107
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 754642797 116 EV-----STPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAIDKKLQ 188
Cdd:PRK12532 108 EGqpqhwNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESLRQCLQ 185
|
|
| PRK12546 |
PRK12546 |
RNA polymerase sigma factor; Provisional |
44-188 |
2.20e-13 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139055 [Multi-domain] Cd Length: 188 Bit Score: 65.25 E-value: 2.20e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 44 NPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGRRPPSSDveadeaesygGGEALQEVSTPEN- 122
Cdd:PRK12546 30 NVAVADDLVQDTIVKAWTNFDKFQEGTNLRAWLFTILRNTFYSDRRKHKREVPDPE----------GVHAASLAVKPAHd 99
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 754642797 123 --LALTDeikrtVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAIDKKLQ 188
Cdd:PRK12546 100 grLAMSD-----FRAAFAQLPDEQREALILVGASGFSYEEAAEMCGVAVGTVKSRANRARARLAELLQ 162
|
|
| PRK12547 |
PRK12547 |
RNA polymerase sigma factor; Provisional |
50-191 |
3.49e-13 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139056 [Multi-domain] Cd Length: 164 Bit Score: 64.13 E-value: 3.49e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 50 DVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGRRPPSSDveadeaesyggGEALQEVSTPE----NLAL 125
Cdd:PRK12547 35 DLVQDTLMKAWAKQDSFEMGTNLKAWLFTILRNEFYSQMRKRGREVQDSD-----------GVFTARVAVHPaqygSLDL 103
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754642797 126 TDEIKrtvfaAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREaidkKLQPLI 191
Cdd:PRK12547 104 QDFKK-----ALNLLSADQREAIILIGASGFSYEDAAAICGCAVGTIKSRVSRARN----RLQELL 160
|
|
| PRK13919 |
PRK13919 |
putative RNA polymerase sigma E protein; Provisional |
1-192 |
1.92e-12 |
|
putative RNA polymerase sigma E protein; Provisional
Pssm-ID: 184395 [Multi-domain] Cd Length: 186 Bit Score: 62.62 E-value: 1.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 1 MSDQNLLDEQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTF--RGESAfYTWLYR 78
Cdd:PRK13919 3 LPLESLSDEALLALVARGEEEALRALFRRYAGAFLALARRMGLDGAAAEDVVQEVFIRVWKKAKEFdpRRGSA-RAWLLA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 79 IAVNTAKNYLTSQGRRPPSSDVEADEAESYG-GGEALQEVSTPENLALTdeikrtvfAAIEALPEDLRTAITLRELEGLS 157
Cdd:PRK13919 82 LAHHAAVDHVRRRAARPQPLEPDEREPEAFDlPGPGLDEEGHLDRTRLG--------RALKALSPEERRVIEVLYYQGYT 153
|
170 180 190
....*....|....*....|....*....|....*
gi 754642797 158 YEEIAEIMDCPVGTVRSrifRAREAIDKKLQPLIE 192
Cdd:PRK13919 154 HREAAQLLGLPLGTLKT---RARRALSRLKEVLRE 185
|
|
| PRK12511 |
PRK12511 |
RNA polymerase sigma factor; Provisional |
42-183 |
3.64e-12 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237123 [Multi-domain] Cd Length: 182 Bit Score: 61.73 E-value: 3.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 42 VNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAvntaKNYLTSQGRRPPSSDVEADEAESygggeaLQEVSTP- 120
Cdd:PRK12511 25 TRDSAEAEDLVHDALVRALERRASFRSGGNLRTWLMSIL----HNAFIDELRRRRVEARRADELAV------LADASLPa 94
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 754642797 121 --ENLALTDEIKRtvfaAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAI 183
Cdd:PRK12511 95 aqEHAVRLAQIRD----AFFDLPEEQRAALHLVAIEGLSYQEAAAVLGIPIGTLMSRIGRARAAL 155
|
|
| PRK12540 |
PRK12540 |
RNA polymerase sigma factor; Provisional |
50-187 |
1.04e-11 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183579 [Multi-domain] Cd Length: 182 Bit Score: 60.75 E-value: 1.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 50 DVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGRRPPSSDveadeaesygGGEALQEVSTPENLA-LTDE 128
Cdd:PRK12540 34 DLVQETLLRALANIDSFQPGSNLPAWLFTILRNLFRSDYRKRRREVEDAD----------GSYAKTLKSQPGQNAhLEFE 103
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 754642797 129 IKRtvfAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAIDKKL 187
Cdd:PRK12540 104 EFR---AALDKLPQDQREALILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSALL 159
|
|
| COG4941 |
COG4941 |
Predicted RNA polymerase sigma factor, contains C-terminal TPR domain [Transcription]; |
33-183 |
2.27e-11 |
|
Predicted RNA polymerase sigma factor, contains C-terminal TPR domain [Transcription];
Pssm-ID: 443968 [Multi-domain] Cd Length: 412 Bit Score: 61.65 E-value: 2.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 33 KVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTfRG----ESAfytWLYRIAVNTAKNYLTSQGRRPPSSDVEADEAESY 108
Cdd:COG4941 18 RLVAALARRFGDLDLAEDAVQDAFLAALEQWPR-DGvpdnPAA---WLYTVARRRAIDRLRREARRRRKEAELAADLEAE 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754642797 109 GGGEALQEVstpenlALTDEIKRTVFAAI-EALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAI 183
Cdd:COG4941 94 APAEDADDD------DIPDDRLRLLFTCChPALSPEAQVALTLRLVGGLTTAEIARAFLVPEATMAQRIVRAKRKI 163
|
|
| FliA |
COG1191 |
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA ... |
9-176 |
2.44e-11 |
|
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA polymerase specialized sigma subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440804 [Multi-domain] Cd Length: 236 Bit Score: 60.61 E-value: 2.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 9 EQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNN-PGDVPD---VAQEAFIKAYR-------------ALPTFRGESA 71
Cdd:COG1191 3 EELLRRYQEGDEEAREELIEEYLPLVKKIASRLAGRlPAELDDliqVGLIGLIEAIDrfdpskgvsfetyAVPRIRGAIL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 72 FY----TWLYR------IAVNTAKNYLTSQGRRPPSSDVEADE-----------------------AESYGGGEALQEV- 117
Cdd:COG1191 83 DYlrdeDWVPRsvrelaRKIEEAIEELEQELGREPTDEEIAEElgisleevqealeaanayqllslDEPLEDGDDLLDLl 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 754642797 118 --STPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVrSRI 176
Cdd:COG1191 163 esGDPEEELEHEELREALAEAIEQLPERERLVLSLYYFEELTLKEIAEVLGVSESRV-SRL 222
|
|
| PRK09644 |
PRK09644 |
RNA polymerase sigma factor SigM; Provisional |
50-192 |
3.03e-11 |
|
RNA polymerase sigma factor SigM; Provisional
Pssm-ID: 170033 [Multi-domain] Cd Length: 165 Bit Score: 59.12 E-value: 3.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 50 DVAQEAFIKAYRALPTFRgESAFYTWLYRIAVNTAKNYltsqgrrppssdVEADEAESYGGGEALQEV--STPENLALTD 127
Cdd:PRK09644 30 DLLQETFYRAYIYLEDYD-NQKVKPWLFKVAYHTFIDF------------VRKEKKVSFVGTDEIEAIqaESTEEYVVAK 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 754642797 128 EIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAReaidKKLQPLIE 192
Cdd:PRK09644 97 NSYEKLIQIIHTLPVIEAQAILLCDVHELTYEEAASVLDLKLNTYKSHLFRGR----KRLKALLK 157
|
|
| sigI |
PRK09635 |
RNA polymerase sigma factor SigI; Provisional |
34-183 |
4.52e-10 |
|
RNA polymerase sigma factor SigI; Provisional
Pssm-ID: 182008 [Multi-domain] Cd Length: 290 Bit Score: 57.28 E-value: 4.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 34 VVNLVARYVNNPGDVPDVAQEAFIKAYRALPT----FRGesafytWLYRIAVNTAKNYLTS-QGRRPPSSDVeadeAESY 108
Cdd:PRK09635 18 LVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGdiddERG------WLIVVTSRLCLDHIKSaSTRRERPQDI----AAWH 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 754642797 109 GGGEALQEVSTPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAI 183
Cdd:PRK09635 88 DGDASVSSVDPADRVTLDDEVRLALLIMLERLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKI 162
|
|
| PRK12530 |
PRK12530 |
RNA polymerase sigma factor; Provisional |
42-180 |
8.30e-10 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237128 [Multi-domain] Cd Length: 189 Bit Score: 55.54 E-value: 8.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 42 VNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGRRPPSSDVEADEAE------------SYG 109
Cdd:PRK12530 28 LKDADLAEDVVQEALVSAYKNADSFKGQSALKTWIFAILKNKIIDLIRYRKRFVNESELIEEDSPnsffdekghwkpEYY 107
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 754642797 110 GGEALQEvstPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAR 180
Cdd:PRK12530 108 EPSEWQE---VENTVYKEEFWLIFEACLNHLPAQQARVFMMREYLELSSEQICQECDISTSNLHVLLYRAR 175
|
|
| PRK09648 |
PRK09648 |
RNA polymerase sigma factor ShbA; |
9-173 |
1.62e-09 |
|
RNA polymerase sigma factor ShbA;
Pssm-ID: 236607 [Multi-domain] Cd Length: 189 Bit Score: 54.59 E-value: 1.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 9 EQLVERVQRGDKAAFNLLVKKYQHKVVNLV-ARYVNNPGD---VPDVAQEAFIKAYRALPTFRGESA-FYTWLYRIAVNT 83
Cdd:PRK09648 12 DALVAEAVAGDRRALREVLEIIRPLVVRYCrARLGGVERPglsADDVAQEVCLAVITALPRYRDQGRpFLAFVYGIAAHK 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 84 AKNYLTSQGRRP--PSSDVEADEAESYGggealqevstPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEI 161
Cdd:PRK09648 92 VADAHRAAGRDKavPTEEVPERPSDDAG----------PEERALRSESSNRMRELLDTLPEKQREILILRVVVGLSAEET 161
|
170
....*....|..
gi 754642797 162 AEIMDCPVGTVR 173
Cdd:PRK09648 162 AEAVGSTPGAVR 173
|
|
| Sigma70_r4 |
pfam04545 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
136-183 |
2.29e-09 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.
Pssm-ID: 461347 [Multi-domain] Cd Length: 50 Bit Score: 50.89 E-value: 2.29e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 754642797 136 AIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAI 183
Cdd:pfam04545 1 ALASLPPRERQVLVLRYGEGLTLEEIGERLGISRERVRQIEKRALRKL 48
|
|
| PRK09047 |
PRK09047 |
RNA polymerase factor sigma-70; Validated |
50-187 |
5.38e-09 |
|
RNA polymerase factor sigma-70; Validated
Pssm-ID: 236367 [Multi-domain] Cd Length: 161 Bit Score: 52.66 E-value: 5.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 50 DVAQEAFIK---AYRALPtfrgESAFYTWLYRIAVNTAKNYLTSQGRRPP----SSDVEADEAESYGGGeaLQEVSTPEN 122
Cdd:PRK09047 9 DIVQDAMIKlaeKYGDRP----AAEWPPLFQRILQNRIHDWFRRQKVRNTwvslFSSFSDDDDDDDFDP--LETLDSADE 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754642797 123 LALT--DEIKRTVF-----AAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAIDKKL 187
Cdd:PRK09047 83 GAESpaDKLERAQVlqlieEAIQKLPARQREAFLLRYWEDMDVAETAAAMGCSEGSVKTHCSRATHALAKAL 154
|
|
| PRK12537 |
PRK12537 |
RNA polymerase sigma factor; Provisional |
17-183 |
2.00e-08 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171568 [Multi-domain] Cd Length: 182 Bit Score: 51.70 E-value: 2.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 17 RGDKAAFNLLvkkYQH---KVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTF---RGESAfyTWLYRIAVNTAKNYLTS 90
Cdd:PRK12537 19 RGDRRALQAL---YQQesaRLLGVARRIVRDRALAEDIVHDAFIKIWTGAASFdpaRGSAR--GWIYSVTRHLALNVLRD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 91 QGRRPPSSDveaDEAESYGGGEALQevSTPENLALTDEIKRtvfaAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVG 170
Cdd:PRK12537 94 TRREVVLDD---DAEETAQTLHEII--DDFDLWANSGKIHR----CLEQLEPARRNCILHAYVDGCSHAEIAQRLGAPLG 164
|
170
....*....|...
gi 754642797 171 TVRSRIFRAREAI 183
Cdd:PRK12537 165 TVKAWIKRSLKAL 177
|
|
| PRK12517 |
PRK12517 |
RNA polymerase sigma factor; Provisional |
50-187 |
2.04e-08 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183569 [Multi-domain] Cd Length: 188 Bit Score: 51.61 E-value: 2.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 50 DVAQEAFIKAYRALPTFRGESAFYTWLyrIAVNTAKNYLTSQGRRPPSSDVEADEAESygggealQEVSTPENLALTDEI 129
Cdd:PRK12517 52 DLVQETFLRAWRSLDSLKDEKAAKAWL--ITILRRENARRFERKQFDLVDIEDDSIED-------DASHSSEEEMEQEWL 122
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 754642797 130 KRtvfaAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAIDKKL 187
Cdd:PRK12517 123 RR----QIAKLDPEYREPLLLQVIGGFSGEEIAEILDLNKNTVMTRLFRARNQLKEAL 176
|
|
| PRK12544 |
PRK12544 |
RNA polymerase factor sigma-70; |
50-180 |
4.40e-08 |
|
RNA polymerase factor sigma-70;
Pssm-ID: 183583 [Multi-domain] Cd Length: 206 Bit Score: 50.96 E-value: 4.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 50 DVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGRRPPSSDVEADEAES------------YGGGEALQEV 117
Cdd:PRK12544 47 DAVQEALIGALKNADSFAGRAAFKTWVFAILKNKIIDLLRQKKRHVSASSLLRDEEEEedfeelfdesghWQKDERPQAW 126
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754642797 118 STPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAR 180
Cdd:PRK12544 127 GNPEESLEQEQFWRIFEACLDGLPAKYARVFMMREFIELETNEICHAVDLSVSNLNVLLYRAR 189
|
|
| PRK12541 |
PRK12541 |
RNA polymerase sigma factor; Provisional |
50-185 |
1.15e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183580 [Multi-domain] Cd Length: 161 Bit Score: 49.16 E-value: 1.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 50 DVAQEAFIKAYRALPTFRGESaFYTWLYRIAVNTAKNYLTSQGRRPpssDVEADEAEsygggeaLQEV-STPENLALTDE 128
Cdd:PRK12541 34 DLMQETFYRMLVHIDYYKGEE-IRPWLFTIAYNAFIDWYRKEKKYK---TTTIEEFH-------LPNVpSTEHEYFIKHE 102
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 754642797 129 IKrTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAIDK 185
Cdd:PRK12541 103 IA-SWLDSLSSLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKETKS 158
|
|
| PRK12536 |
PRK12536 |
RNA polymerase sigma factor; Provisional |
18-188 |
5.66e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237131 [Multi-domain] Cd Length: 181 Bit Score: 47.74 E-value: 5.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 18 GDKAAF-NLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGRRPP 96
Cdd:PRK12536 18 GDAAAYrQFLSELAAHLRGFLRRRLPQLPDEVEDLVQEILLAVHNARHTYRADQPLTAWVHAIARYKLMDFLRSRARREA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 97 SSDVEADEAESYgggealqevSTPENLAltDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRI 176
Cdd:PRK12536 98 LHDPLDDESELF---------ATSDDEA--AEARRDLGKLLEQLPDRQRLPIVHVKLEGLSVAETAQLTGLSESAVKVGI 166
|
170
....*....|..
gi 754642797 177 FRAREAIDKKLQ 188
Cdd:PRK12536 167 HRGLKALAAKIR 178
|
|
| PRK09645 |
PRK09645 |
ECF RNA polymerase sigma factor SigL; |
37-188 |
1.04e-06 |
|
ECF RNA polymerase sigma factor SigL;
Pssm-ID: 236605 [Multi-domain] Cd Length: 173 Bit Score: 46.61 E-value: 1.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 37 LVARYVNNPGDVPDVAQEAFIKAYRALPTF-RGESAFYTWLYRIAVNTAKNYLTSQGRRPPSSDVEADEAesygggealQ 115
Cdd:PRK09645 25 YALRLTGDRARAEDVVQETLLRAWQHPEVLaDTGRSARAWLFTVARNLVIDERRSARARPVEGGDDVLGV---------P 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 754642797 116 EVSTPenlaltDEIKRTVFA-----AIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAIDKKLQ 188
Cdd:PRK09645 96 EQSAP------DEVDRALDRllvadALAQLSPEHRAVLVRSYYRGWSTAQIAADLGIPEGTVKSRLHYALRALRLALQ 167
|
|
| PRK12526 |
PRK12526 |
RNA polymerase sigma factor; Provisional |
7-176 |
1.71e-06 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237127 [Multi-domain] Cd Length: 206 Bit Score: 46.72 E-value: 1.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 7 LDEQLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGES-AFYTWLYRIAVNTAK 85
Cdd:PRK12526 24 LSQWLILVAISRDKQAFTHLFQFFAPKIKRFGIKQLGNEAQANELVQETMSNVWRKAHLYNGDKgAATTWVYTVMRNAAF 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 86 NYLtsqgrRPPSSDVEADEAESYGGGEALQEVSTPENLALTDEI-KRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEI 164
Cdd:PRK12526 104 DML-----RKIKAKKEQNLGDDIWPIEQALAESQSESEEFSDHLmDKQILSYIEKLPEAQQTVVKGVYFQELSQEQLAQQ 178
|
170
....*....|..
gi 754642797 165 MDCPVGTVRSRI 176
Cdd:PRK12526 179 LNVPLGTVKSRL 190
|
|
| SigX4 |
TIGR02957 |
RNA polymerase sigma-70 factor, TIGR02957 family; This group of sigma factors are members of ... |
47-184 |
1.86e-06 |
|
RNA polymerase sigma-70 factor, TIGR02957 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Pssm-ID: 132002 [Multi-domain] Cd Length: 281 Bit Score: 46.96 E-value: 1.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 47 DVPDVAQEAFIKAYRA-LPTFRGESAfytWLYRIAVNTAKNYLTSQGRRppssdveadeAESYGGgEALQE--VSTPENL 123
Cdd:TIGR02957 23 DAEDIVQETFLRWQEAdRAQIENPKA---YLTKVVTRRCIDVLRSARAR----------REVYVG-PWLPEplLTTSADP 88
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 754642797 124 ALTDEIKRTVFAA----IEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAID 184
Cdd:TIGR02957 89 AESVELAESLSMAylllLERLSPLERAVFVLREVFDYPYEEIASIVGKSEANCRQLVSRARRHLD 153
|
|
| PRK12527 |
PRK12527 |
RNA polymerase sigma factor; Reviewed |
30-179 |
3.21e-06 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 171560 [Multi-domain] Cd Length: 159 Bit Score: 45.15 E-value: 3.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 30 YQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGES--AFytwLYRIAVNTAKN-YLTSQGRRPPSSDVeADEAE 106
Cdd:PRK12527 4 YYRELVRFLSARLGNRQAAEDVAHDAYLRVLERSSSAQIEHprAF---LYRTALNLVVDrHRRHRVRQAEPLEV-LDEEE 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754642797 107 SYGGGEALQEVSTPENLALTDEikrtvfaAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRA 179
Cdd:PRK12527 80 RLHSPSPQTRLDLGQRLALLQR-------ALAELPPACRDSFLLRKLEGLSHQQIAEHLGISRSLVEKHIVNA 145
|
|
| PRK07037 |
PRK07037 |
extracytoplasmic-function sigma-70 factor; Validated |
35-162 |
3.81e-06 |
|
extracytoplasmic-function sigma-70 factor; Validated
Pssm-ID: 180803 [Multi-domain] Cd Length: 163 Bit Score: 45.06 E-value: 3.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 35 VNLVARYVNNPGDVPDVAQEAFIKAYRALPTFrGESAFYTWLYRIAVNTAKNYLTSQGRRppsSDVEADEAEsygGGEAL 114
Cdd:PRK07037 12 VKIAARIVGCRSRAEDVVQDAFVKLVEAPNQD-AVKQPVAYLFRIVRNLAIDHYRRQALE---NKYHGDEED---GLDVP 84
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 754642797 115 QEVSTPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIA 162
Cdd:PRK07037 85 SPEASPEAALINRDTLRHVADALSELPARTRYAFEMYRLHGETQKDIA 132
|
|
| PRK06811 |
PRK06811 |
RNA polymerase factor sigma-70; Validated |
8-193 |
4.49e-06 |
|
RNA polymerase factor sigma-70; Validated
Pssm-ID: 180707 [Multi-domain] Cd Length: 189 Bit Score: 44.93 E-value: 4.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 8 DEQLVERVQRGDKAAFNLLVKKYQ---HKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGE-SAFYTWLYRIAVNT 83
Cdd:PRK06811 5 EDNFIKELKKKNEKALEFIVDTYGnlvKKIVHKVLGTVNYSQLIEECVNDIFLSIWNNIDKFDEEkGSFKKWIAAISKYK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 84 AKNYLTSQGRRPPSSDVEADEAESygggealqEVSTpENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAE 163
Cdd:PRK06811 85 AIDYKRKLTKNNEIDSIDEFILIS--------EESI-ENEIILKENKEEILKLINDLEKLDREIFIRRYLLGEKIEEIAK 155
|
170 180 190
....*....|....*....|....*....|
gi 754642797 164 IMDCPVGTVRSRIFRAReaidKKLQPLIEN 193
Cdd:PRK06811 156 KLGLTRSAIDNRLSRGR----KKLQKNKLN 181
|
|
| Sigma70_ECF |
pfam07638 |
ECF sigma factor; These proteins are probably RNA polymerase sigma factors belonging to the ... |
10-181 |
1.49e-05 |
|
ECF sigma factor; These proteins are probably RNA polymerase sigma factors belonging to the extra-cytoplasmic function (ECF) subfamily and show sequence similarity to pfam04542 and pfam04545.
Pssm-ID: 254323 [Multi-domain] Cd Length: 185 Bit Score: 43.56 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 10 QLVERVQRGDKAAFNLLVKKYQHKVVNLVARYVNNP---GDVPDVA--QEAFIKAYR--ALPTFRGESAFYTWLY----R 78
Cdd:pfam07638 6 QLLQQVKDGDAAATEQLLPLVYDELRRLAGSKLQNErrgHTLQPTAlvHEAFVRLVDteDFPDWSGRGHFFAAAAeamrR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 79 IAVNTAKnyltSQGRRPPSSDV---EADEAESYGggealQEVSTPENLALTDEIKRtvfaaIEALPEDLRTAITLRELEG 155
Cdd:pfam07638 86 ILIDHAR----RRQRQKRGGDVqrrELDEVVDNG-----DSPNPDLLLDLDEALEQ-----LFSLSPRQARLVELRFFAG 151
|
170 180
....*....|....*....|....*.
gi 754642797 156 LSYEEIAEIMDCPVGTVRSRIFRARE 181
Cdd:pfam07638 152 LSNDEIAERLGVSERTVERNWALARA 177
|
|
| PRK09191 |
PRK09191 |
two-component response regulator; Provisional |
135-188 |
1.60e-05 |
|
two-component response regulator; Provisional
Pssm-ID: 236402 [Multi-domain] Cd Length: 261 Bit Score: 44.07 E-value: 1.60e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 754642797 135 AAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAIDKKLQ 188
Cdd:PRK09191 84 RRLAGLTPLPRQAFLLTALEGFSVEEAAEILGVDPAEAEALLDDARAEIARQVA 137
|
|
| PRK09636 |
PRK09636 |
RNA polymerase sigma factor SigJ; Provisional |
47-183 |
5.40e-05 |
|
RNA polymerase sigma factor SigJ; Provisional
Pssm-ID: 236600 [Multi-domain] Cd Length: 293 Bit Score: 42.60 E-value: 5.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 47 DVPDVAQEAFIKAYRA-LPTFRGESAfytWLYRIAVNTAKNYLTSQGRRP--------PSSDVEADEAESYGGGEAlQEV 117
Cdd:PRK09636 30 DAEDIVQEAWLRWNNAdRAQIRDPRA---WLTRVVTRLCLDRLRSARHRRetyvgpwlPEPVVEELDDPLEAVVAA-EDL 105
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754642797 118 STPENLALtdeikrtvfaaiEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAI 183
Cdd:PRK09636 106 SLALMLAL------------ERLSPLERAAFLLHDVFGVPFDEIASTLGRSPAACRQLASRARKHV 159
|
|
| PRK12512 |
PRK12512 |
RNA polymerase sigma factor; Provisional |
38-187 |
1.24e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171551 [Multi-domain] Cd Length: 184 Bit Score: 40.84 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 38 VARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGRRPpssDVEADE-AESYGGGEALQE 116
Cdd:PRK12512 43 LARAGQPADQAEDIVQEILLAVHLKRHTWDPGAPFAPWLFAIARNKLIDALRRRGRRV---FVDIDDfAETLPAEPATET 119
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 754642797 117 VSTPEnlaltdeikrtVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAIDKKL 187
Cdd:PRK12512 120 LPAGD-----------VGRHLETLPPRQRDVVQSISVEGASIKETAAKLSMSEGAVRVALHRGLAALAAKF 179
|
|
| PRK06288 |
PRK06288 |
RNA polymerase sigma factor WhiG; Reviewed |
120-176 |
2.30e-04 |
|
RNA polymerase sigma factor WhiG; Reviewed
Pssm-ID: 235770 [Multi-domain] Cd Length: 268 Bit Score: 40.83 E-value: 2.30e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 754642797 120 PENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMdcpvGTVRSRI 176
Cdd:PRK06288 193 PDEIAEREEIKRVIVEAIKTLPEREKKVLILYYYEDLTLKEIGKVL----GVTESRI 245
|
|
| PRK06930 |
PRK06930 |
positive control sigma-like factor; Validated |
142-188 |
6.55e-04 |
|
positive control sigma-like factor; Validated
Pssm-ID: 180757 [Multi-domain] Cd Length: 170 Bit Score: 38.56 E-value: 6.55e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 754642797 142 EDLRTAITLRELE--------GLSYEEIAEIMDCPVGTVRSRIFRAREAIDKKLQ 188
Cdd:PRK06930 109 EDALSVLTEREKEvylmhrgyGLSYSEIADYLNIKKSTVQSMIERAEKKIARQIN 163
|
|
| PRK12542 |
PRK12542 |
RNA polymerase sigma factor; Provisional |
14-191 |
9.67e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183581 [Multi-domain] Cd Length: 185 Bit Score: 38.49 E-value: 9.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 14 RVQRGDKAAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESA--FYTWLYRIAVNTAKNYLTSQ 91
Cdd:PRK12542 2 KVTNNDYEKMEELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHSLNTqeLKRYILRVAKNKAIDSYRKN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 92 GRRppSSDVEADEAESYgggEALQEVSTPENLALTDEIKrtVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGT 171
Cdd:PRK12542 82 KRH--ETFLEEYERESI---EAVDENIEEWEKRKMSEVQ--IDTLLKELNESNRQVFKYKVFYNLTYQEISSVMGITEAN 154
|
170 180
....*....|....*....|
gi 754642797 172 VRSRIFRAReaidKKLQPLI 191
Cdd:PRK12542 155 VRKQFERAR----KRVQNMI 170
|
|
| PRK12525 |
PRK12525 |
RNA polymerase sigma factor; Provisional |
38-172 |
1.10e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139037 [Multi-domain] Cd Length: 168 Bit Score: 38.00 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 38 VARYVNNPGDVPDVAQEAFIKAYrALP---TFRGESAFYTwlyriavnTAKNYLTSQGRRppSSDVEADEAESYGGG-EA 113
Cdd:PRK12525 26 LSRQLGCPHSAEDIASETFLQVL-ALPdpaSIREPRALLT--------TIARRLMYEGWR--RQDLERAYLQSLAEApEA 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 754642797 114 LQevSTPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTV 172
Cdd:PRK12525 95 VQ--PSPEEQWMVIETLLAIDRLLDGLSGKARAAFLMSQLEGLTYVEIGERLGVSLSRI 151
|
|
| PRK12528 |
PRK12528 |
RNA polymerase sigma factor; Provisional |
40-179 |
6.21e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171561 [Multi-domain] Cd Length: 161 Bit Score: 35.98 E-value: 6.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754642797 40 RYVNNPGDVPDVAQEAFIKAY--RALPTFRGESAFYTWLyriavntAKNYLTSQGRRppsSDVEadeaESYGggEALQEV 117
Cdd:PRK12528 23 RRLGCPQSAADLAQDTFVKVLvaRETAQIIEPRAFLTTI-------AKRVLCNHYRR---QDLE----RAYL--EALAQL 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 754642797 118 stPENLALTDEIKRTVFAAI-------EALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRA 179
Cdd:PRK12528 87 --PERVAPSEEERAIILETLveldqllDGLPPLVKRAFLLAQVDGLGYGEIATELGISLATVKRYLNKA 153
|
|
| |
