NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|754957733|ref|WP_042313830|]
View 

MULTISPECIES: hypothetical protein [Enterobacteriaceae]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
GlgS super family cl23912
Glycogen synthesis protein; Members of this family are involved in glycogen synthesis in ...
 5-54 1.66e-20

Glycogen synthesis protein; Members of this family are involved in glycogen synthesis in Enterobacteria. The structure of the polypeptide chain comprises a bundle of two parallel amphipathic helices, alpha-1 and alpha-3, and a short hydrophobic helix alpha-2 sandwiched between them.


The actual alignment was detected with superfamily member PRK02922:

Pssm-ID: 420087  Cd Length: 67  Bit Score: 76.00  E-value: 1.66e-20
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 754957733  5 EDIYAMRNFEFLAITFAQMAAQGRTVDIDSLTGNMDETHREWFTKRYRHW 54
Cdd:PRK02922  4 HSLYSLNNFDFLARSFARMHAEGRPVDIQAVTGNMDEEHRTWFCARYAWY 53
 
Name Accession Description Interval E-value
PRK02922 PRK02922
cell surface composition regulator GlgS;
5-54 1.66e-20

cell surface composition regulator GlgS;


Pssm-ID: 179501  Cd Length: 67  Bit Score: 76.00  E-value: 1.66e-20
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 754957733  5 EDIYAMRNFEFLAITFAQMAAQGRTVDIDSLTGNMDETHREWFTKRYRHW 54
Cdd:PRK02922  4 HSLYSLNNFDFLARSFARMHAEGRPVDIQAVTGNMDEEHRTWFCARYAWY 53
GlgS pfam08971
Glycogen synthesis protein; Members of this family are involved in glycogen synthesis in ...
 7-51 3.29e-18

Glycogen synthesis protein; Members of this family are involved in glycogen synthesis in Enterobacteria. The structure of the polypeptide chain comprises a bundle of two parallel amphipathic helices, alpha-1 and alpha-3, and a short hydrophobic helix alpha-2 sandwiched between them.


Pssm-ID: 401064  Cd Length: 66  Bit Score: 70.02  E-value: 3.29e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 754957733   7 IYAMRNFEFLAITFAQMAAQGRTVDIDSLTGNMDETHREWFTKRY 51
Cdd:pfam08971  5 LYSLNNFDFLARSFARMHAEGRPVDINAVTGNMDEAHRQWFCKRY 49
 
Name Accession Description Interval E-value
PRK02922 PRK02922
cell surface composition regulator GlgS;
5-54 1.66e-20

cell surface composition regulator GlgS;


Pssm-ID: 179501  Cd Length: 67  Bit Score: 76.00  E-value: 1.66e-20
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 754957733  5 EDIYAMRNFEFLAITFAQMAAQGRTVDIDSLTGNMDETHREWFTKRYRHW 54
Cdd:PRK02922  4 HSLYSLNNFDFLARSFARMHAEGRPVDIQAVTGNMDEEHRTWFCARYAWY 53
GlgS pfam08971
Glycogen synthesis protein; Members of this family are involved in glycogen synthesis in ...
 7-51 3.29e-18

Glycogen synthesis protein; Members of this family are involved in glycogen synthesis in Enterobacteria. The structure of the polypeptide chain comprises a bundle of two parallel amphipathic helices, alpha-1 and alpha-3, and a short hydrophobic helix alpha-2 sandwiched between them.


Pssm-ID: 401064  Cd Length: 66  Bit Score: 70.02  E-value: 3.29e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 754957733   7 IYAMRNFEFLAITFAQMAAQGRTVDIDSLTGNMDETHREWFTKRY 51
Cdd:pfam08971  5 LYSLNNFDFLARSFARMHAEGRPVDINAVTGNMDEAHRQWFCKRY 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH