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Conserved domains on  [gi|755030737|ref|WP_042383453|]
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YhcN/YlaJ family sporulation lipoprotein [Parageobacillus thermoglucosidasius]

Protein Classification

YhcN/YlaJ family sporulation lipoprotein( domain architecture ID 10560157)

YhcN/YlaJ family sporulation lipoprotein similar to Bacillus subtilis proteins YlaJ and YhcN that contribute to the efficiency of spore germination

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CoxA COG5912
Spore cortex protein CoxA (YrbB), YhcN/YlaJ family [Cell cycle control, cell division, ...
 102-228 1.97e-32

Spore cortex protein CoxA (YrbB), YhcN/YlaJ family [Cell cycle control, cell division, chromosome partitioning];


:

Pssm-ID: 444614  Cd Length: 181  Bit Score: 116.26  E-value: 1.97e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755030737 102 DTDFGDGDRNYHGHLNSRAGKANpsYYKSYDGRLAEAVSRRADAVKGVSDARALVYRDHVLVAIST----DAKRADHVER 177
Cdd:COG5912   45 KNTANNGDANTNNHLNGNRDRTG--DYNNENQELADRIANRAARVPGVKDATVVVTGNNAYVGIDLkgnlDGKRTDTIKY 122

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 755030737 178 LVAQAVAPYTK-GKHVRVVSNPSMYNRVRTIDNDIRRGRPMEEIERDLKTIF 228
Cdd:COG5912  123 KVAEAVKSADPrIKNVYVSADPDFVDRIRNIANDIRNGRPVSGFFDELAEIV 174
 
Name Accession Description Interval E-value
CoxA COG5912
Spore cortex protein CoxA (YrbB), YhcN/YlaJ family [Cell cycle control, cell division, ...
 102-228 1.97e-32

Spore cortex protein CoxA (YrbB), YhcN/YlaJ family [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444614  Cd Length: 181  Bit Score: 116.26  E-value: 1.97e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755030737 102 DTDFGDGDRNYHGHLNSRAGKANpsYYKSYDGRLAEAVSRRADAVKGVSDARALVYRDHVLVAIST----DAKRADHVER 177
Cdd:COG5912   45 KNTANNGDANTNNHLNGNRDRTG--DYNNENQELADRIANRAARVPGVKDATVVVTGNNAYVGIDLkgnlDGKRTDTIKY 122

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 755030737 178 LVAQAVAPYTK-GKHVRVVSNPSMYNRVRTIDNDIRRGRPMEEIERDLKTIF 228
Cdd:COG5912  123 KVAEAVKSADPrIKNVYVSADPDFVDRIRNIANDIRNGRPVSGFFDELAEIV 174
Spore_YhcN_YlaJ pfam09580
Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); This entry contains YhcN and YlaJ, which ...
 87-228 3.73e-24

Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.


Pssm-ID: 401497  Cd Length: 157  Bit Score: 94.30  E-value: 3.73e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755030737   87 PGTARFDTDAPVLPIDTDFGDGDRN----YHGHLNSRAGKANPSYYKSYDGRLAEAVSRRADAVKGVSDARALVYRDHVL 162
Cdd:pfam09580   5 NTTAVNNGNNPGYNDNNNPSRTDDNgyvrYQKHPVSGQNTTNNGYPNANRGELADKITSRVLRLPGVEDAAVLVTGNTAL 84

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755030737  163 VAISTDA--KRADHVERLVAQAVAPYTKG-KHVRVVSNPSMYNRVRTIDNDIRRGRPMEEIERDLKTIF 228
Cdd:pfam09580  85 VAVDTDNngSDRDELKDQVKKAVKSVDPRiYNVYVSTDPDLFDRIRNFADRLQNGRPVEGFGQEIKEMI 153
spore_YhcN_YlaJ TIGR02898
sporulation lipoprotein, YhcN/YlaJ family; YhcN and YlaJ are predicted lipoproteins that have ...
 134-228 1.78e-08

sporulation lipoprotein, YhcN/YlaJ family; YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment. [Cellular processes, Sporulation and germination]


Pssm-ID: 131944  Cd Length: 158  Bit Score: 51.98  E-value: 1.78e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755030737  134 RLAEAVSRRADAVKGVSDARALVYRDHVLVAISTDAKRADHVERLVAQAVAPYTK-----GKHVRVVSNPSMYNRVRTID 208
Cdd:TIGR02898  54 DVADEIASEAAKVKGVKDATVVITGNYAYVGVDLTNGLEGSVTDELKEKVAETVKstdnrIANVYVSADPDTVERIRRYG 133

                          90       100
                  ....*....|....*....|
gi 755030737  209 NDIRRGRPMEEIERDLKTIF 228
Cdd:TIGR02898 134 KGIKEGRPVEGFLDELAEIV 153
 
Name Accession Description Interval E-value
CoxA COG5912
Spore cortex protein CoxA (YrbB), YhcN/YlaJ family [Cell cycle control, cell division, ...
 102-228 1.97e-32

Spore cortex protein CoxA (YrbB), YhcN/YlaJ family [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444614  Cd Length: 181  Bit Score: 116.26  E-value: 1.97e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755030737 102 DTDFGDGDRNYHGHLNSRAGKANpsYYKSYDGRLAEAVSRRADAVKGVSDARALVYRDHVLVAIST----DAKRADHVER 177
Cdd:COG5912   45 KNTANNGDANTNNHLNGNRDRTG--DYNNENQELADRIANRAARVPGVKDATVVVTGNNAYVGIDLkgnlDGKRTDTIKY 122

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 755030737 178 LVAQAVAPYTK-GKHVRVVSNPSMYNRVRTIDNDIRRGRPMEEIERDLKTIF 228
Cdd:COG5912  123 KVAEAVKSADPrIKNVYVSADPDFVDRIRNIANDIRNGRPVSGFFDELAEIV 174
Spore_YhcN_YlaJ pfam09580
Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); This entry contains YhcN and YlaJ, which ...
 87-228 3.73e-24

Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.


Pssm-ID: 401497  Cd Length: 157  Bit Score: 94.30  E-value: 3.73e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755030737   87 PGTARFDTDAPVLPIDTDFGDGDRN----YHGHLNSRAGKANPSYYKSYDGRLAEAVSRRADAVKGVSDARALVYRDHVL 162
Cdd:pfam09580   5 NTTAVNNGNNPGYNDNNNPSRTDDNgyvrYQKHPVSGQNTTNNGYPNANRGELADKITSRVLRLPGVEDAAVLVTGNTAL 84

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755030737  163 VAISTDA--KRADHVERLVAQAVAPYTKG-KHVRVVSNPSMYNRVRTIDNDIRRGRPMEEIERDLKTIF 228
Cdd:pfam09580  85 VAVDTDNngSDRDELKDQVKKAVKSVDPRiYNVYVSTDPDLFDRIRNFADRLQNGRPVEGFGQEIKEMI 153
spore_YhcN_YlaJ TIGR02898
sporulation lipoprotein, YhcN/YlaJ family; YhcN and YlaJ are predicted lipoproteins that have ...
 134-228 1.78e-08

sporulation lipoprotein, YhcN/YlaJ family; YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment. [Cellular processes, Sporulation and germination]


Pssm-ID: 131944  Cd Length: 158  Bit Score: 51.98  E-value: 1.78e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755030737  134 RLAEAVSRRADAVKGVSDARALVYRDHVLVAISTDAKRADHVERLVAQAVAPYTK-----GKHVRVVSNPSMYNRVRTID 208
Cdd:TIGR02898  54 DVADEIASEAAKVKGVKDATVVITGNYAYVGVDLTNGLEGSVTDELKEKVAETVKstdnrIANVYVSADPDTVERIRRYG 133

                          90       100
                  ....*....|....*....|
gi 755030737  209 NDIRRGRPMEEIERDLKTIF 228
Cdd:TIGR02898 134 KGIKEGRPVEGFLDELAEIV 153
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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