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Conserved domains on  [gi|755114761|ref|WP_042465443|]
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GapR family DNA-binding domain-containing protein [Rhodovulum sulfidophilum]

Protein Classification

DUF2312 domain-containing protein( domain architecture ID 10007946)

uncharacterized DUF2312 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3750 COG3750
Uncharacterized conserved protein, UPF0335 family [Function unknown];
12-90 3.18e-29

Uncharacterized conserved protein, UPF0335 family [Function unknown];


:

Pssm-ID: 442964  Cd Length: 81  Bit Score: 99.52  E-value: 3.18e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755114761 12 EKTYRVAADELRGFIERFEALAEEKAQIGDQQKAVMAEAKGRGYDIKALRRIIALRKRHAEDIAEEEAVLQLYREALGM 90
Cdd:COG3750   2 SDAGGVAADQLRSFIERIERLEEEKKAIADDIKEVYAEAKGNGFDVKVLRQIIRLRKMDPDEREEEEALLDLYKAALGM 80
 
Name Accession Description Interval E-value
COG3750 COG3750
Uncharacterized conserved protein, UPF0335 family [Function unknown];
12-90 3.18e-29

Uncharacterized conserved protein, UPF0335 family [Function unknown];


Pssm-ID: 442964  Cd Length: 81  Bit Score: 99.52  E-value: 3.18e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755114761 12 EKTYRVAADELRGFIERFEALAEEKAQIGDQQKAVMAEAKGRGYDIKALRRIIALRKRHAEDIAEEEAVLQLYREALGM 90
Cdd:COG3750   2 SDAGGVAADQLRSFIERIERLEEEKKAIADDIKEVYAEAKGNGFDVKVLRQIIRLRKMDPDEREEEEALLDLYKAALGM 80
PRK13694 PRK13694
hypothetical protein; Provisional
 14-90 1.47e-22

hypothetical protein; Provisional


Pssm-ID: 237474  Cd Length: 83  Bit Score: 82.81  E-value: 1.47e-22
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 755114761 14 TYRVAADELRGFIERFEALAEEKAQIGDQQKAVMAEAKGRGYDIKALRRIIALRKRHAEDIAEEEAVLQLYREALGM 90
Cdd:PRK13694  6 AEVVAKEQLRAFIERIERLEEEKKTISDDIKDVYAEAKGNGFDVKALKTIIRLRKKDDDERAEEEAILDLYMDALGM 82
DUF2312 pfam10073
Uncharacterized protein conserved in bacteria (DUF2312); Members of this family of ...
 18-89 4.26e-22

Uncharacterized protein conserved in bacteria (DUF2312); Members of this family of hypothetical bacterial proteins have no known function. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 431032  Cd Length: 72  Bit Score: 81.08  E-value: 4.26e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755114761  18 AADELRGFIERFEALAEEKAQIGDQQKAVMAEAKGRGYDIKALRRIIALRKRHAEDIAEEEAVLQLYREALG 89
Cdd:pfam10073  1 AADQLRQFIERIERLEEEKKAIAEDIKDVYAEAKGRGFDTKVMRKIVKLRKMDKDERQEQEALLELYKAALG 72
 
Name Accession Description Interval E-value
COG3750 COG3750
Uncharacterized conserved protein, UPF0335 family [Function unknown];
12-90 3.18e-29

Uncharacterized conserved protein, UPF0335 family [Function unknown];


Pssm-ID: 442964  Cd Length: 81  Bit Score: 99.52  E-value: 3.18e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755114761 12 EKTYRVAADELRGFIERFEALAEEKAQIGDQQKAVMAEAKGRGYDIKALRRIIALRKRHAEDIAEEEAVLQLYREALGM 90
Cdd:COG3750   2 SDAGGVAADQLRSFIERIERLEEEKKAIADDIKEVYAEAKGNGFDVKVLRQIIRLRKMDPDEREEEEALLDLYKAALGM 80
PRK13694 PRK13694
hypothetical protein; Provisional
 14-90 1.47e-22

hypothetical protein; Provisional


Pssm-ID: 237474  Cd Length: 83  Bit Score: 82.81  E-value: 1.47e-22
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 755114761 14 TYRVAADELRGFIERFEALAEEKAQIGDQQKAVMAEAKGRGYDIKALRRIIALRKRHAEDIAEEEAVLQLYREALGM 90
Cdd:PRK13694  6 AEVVAKEQLRAFIERIERLEEEKKTISDDIKDVYAEAKGNGFDVKALKTIIRLRKKDDDERAEEEAILDLYMDALGM 82
DUF2312 pfam10073
Uncharacterized protein conserved in bacteria (DUF2312); Members of this family of ...
 18-89 4.26e-22

Uncharacterized protein conserved in bacteria (DUF2312); Members of this family of hypothetical bacterial proteins have no known function. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 431032  Cd Length: 72  Bit Score: 81.08  E-value: 4.26e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755114761  18 AADELRGFIERFEALAEEKAQIGDQQKAVMAEAKGRGYDIKALRRIIALRKRHAEDIAEEEAVLQLYREALG 89
Cdd:pfam10073  1 AADQLRQFIERIERLEEEKKAIAEDIKDVYAEAKGRGFDTKVMRKIVKLRKMDKDERQEQEALLELYKAALG 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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