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Conserved domains on  [gi|757569340|ref|WP_042825124|]
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MULTISPECIES: TcpQ domain-containing protein [Xanthomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TcpQ super family cl11272
Toxin co-regulated pilus biosynthesis protein Q; The toxin-coregulated pilus (TCP) of Vibrio ...
 195-275 1.63e-16

Toxin co-regulated pilus biosynthesis protein Q; The toxin-coregulated pilus (TCP) of Vibrio cholerae and the soluble TcpF protein that is secreted via the TCP biogenesis apparatus are essential for intestinal colonization in the disease of cholera. TcpQ is part of an outer membrane complex of the TCP biogenesis apparatus, comprised of TcpC and TcpQ, and the TcpQ is required for proper localization of TcpC to the outer membrane. The domain is found in other Proteobacterial species apart from Vibrio.


The actual alignment was detected with superfamily member pfam10671:

Pssm-ID: 431425  Cd Length: 80  Bit Score: 72.70  E-value: 1.63e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757569340  195 QIWSAKAGSTVRETVEQWAQSQSWTVYWPMQDlDYRIVAPLTFDGSLVDAVSKLTLLYESAQRPLAVGIFVNQKLIRYSE 274
Cdd:pfam10671   1 QTWSAVKGETLRDTLQRWASQAGWTVVWDADV-DYPVEASATFSGSFESAVRRVLSALANAGRPLKACFYSKNRVVRVTD 79


                  .
gi 757569340  275 K 275
Cdd:pfam10671  80 K 80
 
Name Accession Description Interval E-value
TcpQ pfam10671
Toxin co-regulated pilus biosynthesis protein Q; The toxin-coregulated pilus (TCP) of Vibrio ...
 195-275 1.63e-16

Toxin co-regulated pilus biosynthesis protein Q; The toxin-coregulated pilus (TCP) of Vibrio cholerae and the soluble TcpF protein that is secreted via the TCP biogenesis apparatus are essential for intestinal colonization in the disease of cholera. TcpQ is part of an outer membrane complex of the TCP biogenesis apparatus, comprised of TcpC and TcpQ, and the TcpQ is required for proper localization of TcpC to the outer membrane. The domain is found in other Proteobacterial species apart from Vibrio.


Pssm-ID: 431425  Cd Length: 80  Bit Score: 72.70  E-value: 1.63e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757569340  195 QIWSAKAGSTVRETVEQWAQSQSWTVYWPMQDlDYRIVAPLTFDGSLVDAVSKLTLLYESAQRPLAVGIFVNQKLIRYSE 274
Cdd:pfam10671   1 QTWSAVKGETLRDTLQRWASQAGWTVVWDADV-DYPVEASATFSGSFESAVRRVLSALANAGRPLKACFYSKNRVVRVTD 79


                  .
gi 757569340  275 K 275
Cdd:pfam10671  80 K 80
 
Name Accession Description Interval E-value
TcpQ pfam10671
Toxin co-regulated pilus biosynthesis protein Q; The toxin-coregulated pilus (TCP) of Vibrio ...
 195-275 1.63e-16

Toxin co-regulated pilus biosynthesis protein Q; The toxin-coregulated pilus (TCP) of Vibrio cholerae and the soluble TcpF protein that is secreted via the TCP biogenesis apparatus are essential for intestinal colonization in the disease of cholera. TcpQ is part of an outer membrane complex of the TCP biogenesis apparatus, comprised of TcpC and TcpQ, and the TcpQ is required for proper localization of TcpC to the outer membrane. The domain is found in other Proteobacterial species apart from Vibrio.


Pssm-ID: 431425  Cd Length: 80  Bit Score: 72.70  E-value: 1.63e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757569340  195 QIWSAKAGSTVRETVEQWAQSQSWTVYWPMQDlDYRIVAPLTFDGSLVDAVSKLTLLYESAQRPLAVGIFVNQKLIRYSE 274
Cdd:pfam10671   1 QTWSAVKGETLRDTLQRWASQAGWTVVWDADV-DYPVEASATFSGSFESAVRRVLSALANAGRPLKACFYSKNRVVRVTD 79


                  .
gi 757569340  275 K 275
Cdd:pfam10671  80 K 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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