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Conserved domains on  [gi|757600324|ref|WP_042847959|]
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MULTISPECIES: biofilm formation regulator BssS [Providencia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BssS super family cl23930
BssS protein family; The BssS protein family is a group of proteins that are involved in ...
 1-84 4.44e-51

BssS protein family; The BssS protein family is a group of proteins that are involved in regulation of biofilm formation. Proteins in this family are approximately 80 amino acids in length.


The actual alignment was detected with superfamily member PRK12301:

Pssm-ID: 451615  Cd Length: 84  Bit Score: 154.47  E-value: 4.44e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757600324  1 MNRKDDVIQTHPVVGWDISTVDSYDAMMLRLHYLPEQDKNSGDAIVDKTMWLTTDVAKQLINILQAGVDKIESGEYIELN 80
Cdd:PRK12301  1 MEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQSPNDQEPEGAEVGQTLWLTTDVARQFISILEAGIAKIESGDYQVNE 80


                ....
gi 757600324 81 LKTH 84
Cdd:PRK12301 81 YRRH 84
 
Name Accession Description Interval E-value
bssS PRK12301
biofilm formation regulator BssS;
1-84 4.44e-51

biofilm formation regulator BssS;


Pssm-ID: 183419  Cd Length: 84  Bit Score: 154.47  E-value: 4.44e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757600324  1 MNRKDDVIQTHPVVGWDISTVDSYDAMMLRLHYLPEQDKNSGDAIVDKTMWLTTDVAKQLINILQAGVDKIESGEYIELN 80
Cdd:PRK12301  1 MEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQSPNDQEPEGAEVGQTLWLTTDVARQFISILEAGIAKIESGDYQVNE 80


                ....
gi 757600324 81 LKTH 84
Cdd:PRK12301 81 YRRH 84
BssS pfam13991
BssS protein family; The BssS protein family is a group of proteins that are involved in ...
 11-81 1.61e-32

BssS protein family; The BssS protein family is a group of proteins that are involved in regulation of biofilm formation. Proteins in this family are approximately 80 amino acids in length.


Pssm-ID: 433631  Cd Length: 72  Bit Score: 107.52  E-value: 1.61e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 757600324  11 HPVVGWDISTVDSYDAMMLRLHYLPEQDKNSGDAIVDKTMWLTTDVAKQLINILQAGVDKIESGEYIELNL 81
Cdd:pfam13991  1 FPVVGWDISTVPSYDLMMIRLHYLSSQDQKPEEADVGRTYWLTTDQARQLILILEAGIDKIESSEYYKPDL 71
 
Name Accession Description Interval E-value
bssS PRK12301
biofilm formation regulator BssS;
1-84 4.44e-51

biofilm formation regulator BssS;


Pssm-ID: 183419  Cd Length: 84  Bit Score: 154.47  E-value: 4.44e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757600324  1 MNRKDDVIQTHPVVGWDISTVDSYDAMMLRLHYLPEQDKNSGDAIVDKTMWLTTDVAKQLINILQAGVDKIESGEYIELN 80
Cdd:PRK12301  1 MEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQSPNDQEPEGAEVGQTLWLTTDVARQFISILEAGIAKIESGDYQVNE 80


                ....
gi 757600324 81 LKTH 84
Cdd:PRK12301 81 YRRH 84
BssS pfam13991
BssS protein family; The BssS protein family is a group of proteins that are involved in ...
 11-81 1.61e-32

BssS protein family; The BssS protein family is a group of proteins that are involved in regulation of biofilm formation. Proteins in this family are approximately 80 amino acids in length.


Pssm-ID: 433631  Cd Length: 72  Bit Score: 107.52  E-value: 1.61e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 757600324  11 HPVVGWDISTVDSYDAMMLRLHYLPEQDKNSGDAIVDKTMWLTTDVAKQLINILQAGVDKIESGEYIELNL 81
Cdd:pfam13991  1 FPVVGWDISTVPSYDLMMIRLHYLSSQDQKPEEADVGRTYWLTTDQARQLILILEAGIDKIESSEYYKPDL 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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