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Conserved domains on  [gi|757660263|ref|WP_042898559|]
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flavodoxin family protein [Acinetobacter calcoaceticus]

Protein Classification

flavodoxin family protein( domain architecture ID 10002025)

flavodoxin family protein is an electron-transfer flavoprotein, such as Methanosarcina thermophila iron-sulfur flavoprotein (Isf) and Clostridium saccharobutylicum flavodoxin, which are [4Fe-4S] cluster-binding electron-transfer flavoproteins

CATH:  3.40.50.360
Gene Ontology:  GO:0009055|GO:0010181
SCOP:  4003377

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WrbA COG0655
Multimeric flavodoxin WrbA, includes NAD(P)H:quinone oxidoreductase [Energy production and ...
 10-182 2.45e-33

Multimeric flavodoxin WrbA, includes NAD(P)H:quinone oxidoreductase [Energy production and conversion];


:

Pssm-ID: 440420 [Multi-domain]  Cd Length: 181  Bit Score: 116.95  E-value: 2.45e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263  10 IVYHSP--YGHTAKVAFAIAAGAEVMGVKVHLMNIEHID----------------------WDALDASQGIIFGSPTYMG 65
Cdd:COG0655    4 VINGSPrkNGNTAALAEAVAEGAEEAGAEVELIRLADLDikpcigcggtgkcvikddmnaiYEKLLEADGIIFGSPTYFG 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263  66 SMTADFKKFMDSTSKRW-KERLWQGKLAAGFANSGGlsGDKLAVLQQLNIFAMQHGMLWSGLPLMTTGHSekdlnrlssc 144
Cdd:COG0655   84 NMSAQLKAFIDRLYALWaKGKLLKGKVGAVFTTGGH--GGAEATLLSLNTFLLHHGMIVVGLPPYGAVGG---------- 151

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 757660263 145 lglmtqsdNAPVEVTPPQGdLDTAKWFGEYIAGLLYRL 182
Cdd:COG0655  152 --------GGPGDVLDEEG-LATARELGKRLAELAKKL 180
 
Name Accession Description Interval E-value
WrbA COG0655
Multimeric flavodoxin WrbA, includes NAD(P)H:quinone oxidoreductase [Energy production and ...
 10-182 2.45e-33

Multimeric flavodoxin WrbA, includes NAD(P)H:quinone oxidoreductase [Energy production and conversion];


Pssm-ID: 440420 [Multi-domain]  Cd Length: 181  Bit Score: 116.95  E-value: 2.45e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263  10 IVYHSP--YGHTAKVAFAIAAGAEVMGVKVHLMNIEHID----------------------WDALDASQGIIFGSPTYMG 65
Cdd:COG0655    4 VINGSPrkNGNTAALAEAVAEGAEEAGAEVELIRLADLDikpcigcggtgkcvikddmnaiYEKLLEADGIIFGSPTYFG 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263  66 SMTADFKKFMDSTSKRW-KERLWQGKLAAGFANSGGlsGDKLAVLQQLNIFAMQHGMLWSGLPLMTTGHSekdlnrlssc 144
Cdd:COG0655   84 NMSAQLKAFIDRLYALWaKGKLLKGKVGAVFTTGGH--GGAEATLLSLNTFLLHHGMIVVGLPPYGAVGG---------- 151

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 757660263 145 lglmtqsdNAPVEVTPPQGdLDTAKWFGEYIAGLLYRL 182
Cdd:COG0655  152 --------GGPGDVLDEEG-LATARELGKRLAELAKKL 180
flav_wrbA TIGR01755
NAD(P)H:quinone oxidoreductase, type IV; This model represents a protein, WrbA, related to and ...
 10-182 3.62e-17

NAD(P)H:quinone oxidoreductase, type IV; This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR (SP:P03032) are not detected. [Energy metabolism, Electron transport]


Pssm-ID: 130816 [Multi-domain]  Cd Length: 197  Bit Score: 75.32  E-value: 3.62e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263   10 IVYHSPYGHTAKVAFAIAAGA-EVMGVKVHLMNI-EHIDWDALDASQG-------------------IIFGSPTYMGSMT 68
Cdd:TIGR01755   5 VLYYSMYGHIETMARAVAEGArEVDGAEVVVKRVpETVPEEVAEKSHGktdqtapvatpqeladydaIIFGTPTRFGNMA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263   69 ADFKKFMDSTSKRWKERLWQGKLAAGFANSG-GLSGDKLAVLQQLNIFAmQHGMLWSGLPLMTTGHSEKDLNRLSSCLGL 147
Cdd:TIGR01755  85 SQMRNFLDQTGGLWASGALVGKVGSVFTSTGtQHGGQESTILSTWTTLL-HHGMIIVPLPYAAQEQMGVDEVRGGSPYGA 163

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 757660263  148 MTQSDNAPVEvTPPQGDLDTAKWFGEYIAGLLYRL 182
Cdd:TIGR01755 164 TTIAGGDGSR-QPSAEELDIARYQGRHVAGLAAKL 197
PRK03767 PRK03767
NAD(P)H:quinone oxidoreductase; Provisional
 10-183 3.12e-15

NAD(P)H:quinone oxidoreductase; Provisional


Pssm-ID: 179647  Cd Length: 200  Bit Score: 70.34  E-value: 3.12e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263  10 IVYHSPYGHTAKVAFAIAAGA-EVMGVKVHLMNI-EHIDWDALDAS-------------------QGIIFGSPTYMGSMT 68
Cdd:PRK03767   6 VLYYSMYGHIETMAEAVAEGArEVAGAEVTIKRVpETVPEEVAKKAggktdqaapvatpdeladyDAIIFGTPTRFGNMA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263  69 ADFKKFMDSTSKRWKERLWQGKLAAGFANSGGLSGDKLAVLQQLNIFAMQHGMLWSGLPlmttgHSEKDLNRLSSCLGlm 148
Cdd:PRK03767  86 GQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGLP-----YAFQGQMDVDEVTG-- 158

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 757660263 149 tqsdNAPVEVT----------PPQGDLDTAKWFGEYIAGLLYRLN 183
Cdd:PRK03767 159 ----GSPYGATtiaggdgsrqPSENELAGARYQGRHVAEIAAKLA 199
FMN_red pfam03358
NADPH-dependent FMN reductase;
48-121 8.53e-15

NADPH-dependent FMN reductase;


Pssm-ID: 427259 [Multi-domain]  Cd Length: 152  Bit Score: 68.03  E-value: 8.53e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757660263   48 DALDASQGIIFGSPTYMGSMTADFKKFMDSTSKRWKERLWQGKLAAGFANSGGLSGDKLAVLQQLNIFAMQHGM 121
Cdd:pfam03358  65 EKIAAADAIIIVTPEYNGSVSGLLKNAIDWLSRLRGGKELRGKPVAIVSTGGGRSGGLRAVEQLRQVLAELGAI 138
 
Name Accession Description Interval E-value
WrbA COG0655
Multimeric flavodoxin WrbA, includes NAD(P)H:quinone oxidoreductase [Energy production and ...
 10-182 2.45e-33

Multimeric flavodoxin WrbA, includes NAD(P)H:quinone oxidoreductase [Energy production and conversion];


Pssm-ID: 440420 [Multi-domain]  Cd Length: 181  Bit Score: 116.95  E-value: 2.45e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263  10 IVYHSP--YGHTAKVAFAIAAGAEVMGVKVHLMNIEHID----------------------WDALDASQGIIFGSPTYMG 65
Cdd:COG0655    4 VINGSPrkNGNTAALAEAVAEGAEEAGAEVELIRLADLDikpcigcggtgkcvikddmnaiYEKLLEADGIIFGSPTYFG 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263  66 SMTADFKKFMDSTSKRW-KERLWQGKLAAGFANSGGlsGDKLAVLQQLNIFAMQHGMLWSGLPLMTTGHSekdlnrlssc 144
Cdd:COG0655   84 NMSAQLKAFIDRLYALWaKGKLLKGKVGAVFTTGGH--GGAEATLLSLNTFLLHHGMIVVGLPPYGAVGG---------- 151

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 757660263 145 lglmtqsdNAPVEVTPPQGdLDTAKWFGEYIAGLLYRL 182
Cdd:COG0655  152 --------GGPGDVLDEEG-LATARELGKRLAELAKKL 180
flav_wrbA TIGR01755
NAD(P)H:quinone oxidoreductase, type IV; This model represents a protein, WrbA, related to and ...
 10-182 3.62e-17

NAD(P)H:quinone oxidoreductase, type IV; This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR (SP:P03032) are not detected. [Energy metabolism, Electron transport]


Pssm-ID: 130816 [Multi-domain]  Cd Length: 197  Bit Score: 75.32  E-value: 3.62e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263   10 IVYHSPYGHTAKVAFAIAAGA-EVMGVKVHLMNI-EHIDWDALDASQG-------------------IIFGSPTYMGSMT 68
Cdd:TIGR01755   5 VLYYSMYGHIETMARAVAEGArEVDGAEVVVKRVpETVPEEVAEKSHGktdqtapvatpqeladydaIIFGTPTRFGNMA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263   69 ADFKKFMDSTSKRWKERLWQGKLAAGFANSG-GLSGDKLAVLQQLNIFAmQHGMLWSGLPLMTTGHSEKDLNRLSSCLGL 147
Cdd:TIGR01755  85 SQMRNFLDQTGGLWASGALVGKVGSVFTSTGtQHGGQESTILSTWTTLL-HHGMIIVPLPYAAQEQMGVDEVRGGSPYGA 163

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 757660263  148 MTQSDNAPVEvTPPQGDLDTAKWFGEYIAGLLYRL 182
Cdd:TIGR01755 164 TTIAGGDGSR-QPSAEELDIARYQGRHVAGLAAKL 197
PRK03767 PRK03767
NAD(P)H:quinone oxidoreductase; Provisional
 10-183 3.12e-15

NAD(P)H:quinone oxidoreductase; Provisional


Pssm-ID: 179647  Cd Length: 200  Bit Score: 70.34  E-value: 3.12e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263  10 IVYHSPYGHTAKVAFAIAAGA-EVMGVKVHLMNI-EHIDWDALDAS-------------------QGIIFGSPTYMGSMT 68
Cdd:PRK03767   6 VLYYSMYGHIETMAEAVAEGArEVAGAEVTIKRVpETVPEEVAKKAggktdqaapvatpdeladyDAIIFGTPTRFGNMA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263  69 ADFKKFMDSTSKRWKERLWQGKLAAGFANSGGLSGDKLAVLQQLNIFAMQHGMLWSGLPlmttgHSEKDLNRLSSCLGlm 148
Cdd:PRK03767  86 GQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGLP-----YAFQGQMDVDEVTG-- 158

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 757660263 149 tqsdNAPVEVT----------PPQGDLDTAKWFGEYIAGLLYRLN 183
Cdd:PRK03767 159 ----GSPYGATtiaggdgsrqPSENELAGARYQGRHVAEIAAKLA 199
FldA COG0716
Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: ...
 10-103 3.16e-15

Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440480 [Multi-domain]  Cd Length: 135  Bit Score: 68.78  E-value: 3.16e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263  10 IVYHSPYGHTAKVAFAIAAGAEVMGVKVHlmNIEHIDWDALDASQGIIFGSPTYMGSMTADFKKFMDSTSKRWKerlwqG 89
Cdd:COG0716    3 IVYGSTTGNTEKVAEAIAEALGAAGVDLF--EIEDADLDDLEDYDLLILGTPTWAGELPDDWEDFLEELKEDLS-----G 75

                         90
                 ....*....|....
gi 757660263  90 KLAAGFAnSGGLSG 103
Cdd:COG0716   76 KKVALFG-TGDSSG 88
FMN_red pfam03358
NADPH-dependent FMN reductase;
48-121 8.53e-15

NADPH-dependent FMN reductase;


Pssm-ID: 427259 [Multi-domain]  Cd Length: 152  Bit Score: 68.03  E-value: 8.53e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757660263   48 DALDASQGIIFGSPTYMGSMTADFKKFMDSTSKRWKERLWQGKLAAGFANSGGLSGDKLAVLQQLNIFAMQHGM 121
Cdd:pfam03358  65 EKIAAADAIIIVTPEYNGSVSGLLKNAIDWLSRLRGGKELRGKPVAIVSTGGGRSGGLRAVEQLRQVLAELGAI 138
NorV COG0426
Flavorubredoxin [Energy production and conversion];
4-103 6.26e-13

Flavorubredoxin [Energy production and conversion];


Pssm-ID: 440195 [Multi-domain]  Cd Length: 390  Bit Score: 65.62  E-value: 6.26e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263   4 PEKHLSIVYHSPYGHTAKVAFAIAAGAEVMGVKVHLMNIEHIDW-----DALDASqGIIFGSPTYMGSMTADFKKFMDST 78
Cdd:COG0426  245 PEKKVVIVYASMYGNTEKMAEAIAEGLTEEGVKVKLYDLEKTDPseiitEIFDAK-GIVIGSPTYNGGAFPPIADLLGYL 323

                         90       100
                 ....*....|....*....|....*
gi 757660263  79 skrwKERLWQGKLAAGFaNSGGLSG 103
Cdd:COG0426  324 ----KGLAPKNKLAGAF-GSYGWSG 343
flav_short TIGR01753
flavodoxin, short chain; Flavodoxins are small redox-active proteins with a flavin ...
 9-103 1.17e-08

flavodoxin, short chain; Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction. [Energy metabolism, Electron transport]


Pssm-ID: 273789 [Multi-domain]  Cd Length: 140  Bit Score: 51.18  E-value: 1.17e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263    9 SIVYHSPYGHTAKVAFAIAAGAEVMGVKVHLMNIEHIDWDALDASQGIIFGSPTY-MGSMTA-DFKKFMDSTskrwKERL 86
Cdd:TIGR01753   2 LIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGCSTWgDEDLEQdDFEPFFEEL----EDID 77

                          90
                  ....*....|....*..
gi 757660263   87 WQGKLAAGFAnSGGLSG 103
Cdd:TIGR01753  78 LGGKKVALFG-SGDWGY 93
HemG COG4635
Protoporphyrinogen IX oxidase, menaquinone-dependent (flavodoxin domain) [Coenzyme transport ...
 10-74 2.20e-08

Protoporphyrinogen IX oxidase, menaquinone-dependent (flavodoxin domain) [Coenzyme transport and metabolism];


Pssm-ID: 443673  Cd Length: 179  Bit Score: 51.43  E-value: 2.20e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757660263  10 IVYHSPYGHTAKVAFAIAAGAEVMGVKVHLMNIE---HIDWDALDAsqgIIFGSPTYMGSMTADFKKF 74
Cdd:COG4635    5 ILYASRDGQTRKIAERIAEVLREAGHDVDLVDLEdapDLDLAGYDA---VVIGASIRYGKWLPEAVRF 69
PRK05568 PRK05568
flavodoxin; Provisional
 6-104 9.22e-07

flavodoxin; Provisional


Pssm-ID: 235508 [Multi-domain]  Cd Length: 142  Bit Score: 46.34  E-value: 9.22e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263   6 KHLSIVYHSPYGHTAKVAFAIAAGAEVMGVKVHLMNIEHIDWDALDASQGIIFGSPTyMGSMT---ADFKKFMDSTSKRW 82
Cdd:PRK05568   2 KKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVKGADVVALGSPA-MGDEVleeGEMEPFVESISSLV 80

                         90       100
                 ....*....|....*....|..
gi 757660263  83 KerlwqGKLAAGFANSGGLSGD 104
Cdd:PRK05568  81 K-----GKKLVLFGSYGWGDGE 97
Flavodoxin_1 pfam00258
Flavodoxin;
10-109 1.81e-06

Flavodoxin;


Pssm-ID: 425562 [Multi-domain]  Cd Length: 142  Bit Score: 45.44  E-value: 1.81e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263   10 IVYHSPYGHTAKVAFAIAAGAEVMGVKVHLMNIEHID--WDALDASQGIIFG-SPTYMGSMTADFKKFmdstskrwkerl 86
Cdd:pfam00258   1 IFYGSQTGNTEKLAEAIAEGLGEAGFEVDVVDLDDVDetLSEIEEEDLLLVVvSTWGEGEPPDNAKPF------------ 68

                          90       100
                  ....*....|....*....|...
gi 757660263   87 WQGKLAAGFANSGGLSGDKLAVL 109
Cdd:pfam00258  69 VDWLLLFGTLEDGDLSGLKYAVF 91
Flavodoxin_5 pfam12724
Flavodoxin domain; This is a family of flavodoxins. Flavodoxins are electron transfer proteins ...
 10-118 5.59e-06

Flavodoxin domain; This is a family of flavodoxins. Flavodoxins are electron transfer proteins that carry a molecule of non-covalently bound FMN.


Pssm-ID: 463681 [Multi-domain]  Cd Length: 144  Bit Score: 44.18  E-value: 5.59e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263   10 IVYHSPYGHTAKVAFAIaagAEVMGVKVHLMNIEHI----DWDALDAsqgIIFGSPTYMGSMTADFKKFmdstSKRWKER 85
Cdd:pfam12724   2 ILYSSRDGQTKKIAERI---AEELREEGELVDVEDVeageDLSSYDA---VVIGASIYYGKHLPELRQF----VTKHRDE 71

                          90       100       110
                  ....*....|....*....|....*....|...
gi 757660263   86 LwQGKLAAGFanSGGLSGDKLAVLQQLNIFAMQ 118
Cdd:pfam12724  72 L-SSKPVAFF--SVNLTARKPEKNPYMRKFLLK 101
SsuE COG0431
NAD(P)H-dependent FMN reductase [Energy production and conversion];
19-112 4.75e-05

NAD(P)H-dependent FMN reductase [Energy production and conversion];


Pssm-ID: 440200 [Multi-domain]  Cd Length: 162  Bit Score: 41.68  E-value: 4.75e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263  19 TAKVAFAIAAGAEVMGVKVHLMNIEHID-------------------W-DALDASQGIIFGSPTYMGSMTADFKKFMDST 78
Cdd:COG0431   16 NRKLARAAAELAPAAGAEVELIDLRDLDlplydedleadgappavkaLrEAIAAADGVVIVTPEYNGSYPGVLKNALDWL 95

                         90       100       110
                 ....*....|....*....|....*....|....
gi 757660263  79 SkrwkERLWQGKLAAGFANSGGLSGdKLAVLQQL 112
Cdd:COG0431   96 S----RSELAGKPVALVSTSGGARG-GLRALEHL 124
PRK11921 PRK11921
anaerobic nitric oxide reductase flavorubredoxin;
5-111 8.80e-04

anaerobic nitric oxide reductase flavorubredoxin;


Pssm-ID: 237023 [Multi-domain]  Cd Length: 394  Bit Score: 38.91  E-value: 8.80e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757660263   5 EKHLSIVYHSPYGHTAKVAFAIAAGAEVM--GVKVHLMNIEHIDWDALDA----SQGIIFGSPT----YMGSMTADFKKF 74
Cdd:PRK11921 247 ENQVTILYDTMWNSTRRMAEAIAEGIKKAnkDVTVKLYNSAKSDKNDIITevfkSKAILVGSSTinrgILSSTAAILEEI 326

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 757660263  75 mdstskrwKERLWQGKLAAGFAnSGGLSGDKLAVLQQ 111
Cdd:PRK11921 327 --------KGLGFKNKKAAAFG-SYGWSGESVKIITE 354
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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