|
Name |
Accession |
Description |
Interval |
E-value |
| EAL |
smart00052 |
Putative diguanylate phosphodiesterase; Putative diguanylate phosphodiesterase, present in a ... |
497-735 |
1.18e-85 |
|
Putative diguanylate phosphodiesterase; Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Pssm-ID: 214491 [Multi-domain] Cd Length: 242 Bit Score: 270.63 E-value: 1.18e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 497 MNRLQHALEHDRFCLMAQPIEGLRG--DVYHEILLRLLDDDGGMINPDAFLPVAHEFGLSSRIDLWVIEHTLRFMAENRA 574
Cdd:smart00052 1 ERELRQALENGQFLLYYQPIVSLRTgrLVGVEALIRWQHPEGGIISPDEFIPLAEETGLIVPLGRWVLEQACQQLAEWQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 575 QMPAR-RFALNLSASSVCRARFAQDISKLLSKYQIEAWQLIFEVTESQALMNAGQAEATLQNLQQLGCQIAIDDFGTGYA 653
Cdd:smart00052 81 QGPPPlLISINLSARQLISPDLVPRVLELLEETGLPPQRLELEITESVLLDDDESAVATLQRLRELGVRIALDDFGTGYS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 654 SYARLKNVNANILKIDGSFIRNIVSNSLDYQIVASICHLARMKKMQVVAEFVESEEIRHAAISLGIDYMQGYLIGVPQPL 733
Cdd:smart00052 161 SLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVETPEQLDLLRSLGCDYGQGYLFSRPLPL 240
|
..
gi 757781261 734 SD 735
Cdd:smart00052 241 DD 242
|
|
| EAL |
cd01948 |
EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL ... |
498-735 |
1.53e-85 |
|
EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Pssm-ID: 238923 [Multi-domain] Cd Length: 240 Bit Score: 270.19 E-value: 1.53e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 498 NRLQHALEHDRFCLMAQPIEGLRGD--VYHEILLRLLDDDGGMINPDAFLPVAHEFGLSSRIDLWVIEHTLRFMAENRAQ 575
Cdd:cd01948 1 ADLRRALERGEFELYYQPIVDLRTGriVGYEALLRWRHPEGGLISPAEFIPLAEETGLIVELGRWVLEEACRQLARWQAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 576 MPARRFALNLSASSVCRARFAQDISKLLSKYQIEAWQLIFEVTESQALMNAGQAEATLQNLQQLGCQIAIDDFGTGYASY 655
Cdd:cd01948 81 GPDLRLSVNLSARQLRDPDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGVRIALDDFGTGYSSL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 656 ARLKNVNANILKIDGSFIRNIVSNSLDYQIVASICHLARMKKMQVVAEFVESEEIRHAAISLGIDYMQGYLIGVPQPLSD 735
Cdd:cd01948 161 SYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGVETEEQLELLRELGCDYVQGYLFSRPLPAEE 240
|
|
| EAL |
COG2200 |
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) ... |
216-735 |
1.30e-83 |
|
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) [Signal transduction mechanisms];
Pssm-ID: 441802 [Multi-domain] Cd Length: 576 Bit Score: 276.67 E-value: 1.30e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 216 IIIWLLVLSALMSLLCMPLNENSSIFSTNYTMSLLLPVMLWGAMRYGYRFISLLWAPVLIIAIHNYRSYTPYYSGYDVQL 295
Cdd:COG2200 45 VAALLAALLAALLLLLALALLLLLLLLLLLLLLLLLLLLALLLLLLLLLLLLLLLLLLLALLLAALLALLLLLLLLLLLL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 296 AITSSSFLVFSFIVNYMAVLATRQRIVSSRARRLAFLDPVVHLPNLRALNRALRNTPWSALCFLRVPELEFLVKNYGIML 375
Cdd:COG2200 125 LLSLLLLLVLVLLRLALELLLALLLLALLALLDLLLLLLLRRLLLLLLLLLLLLLLALALLALLLLLLLLLLLLLDNDGL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 376 RIQYKQQLSHWIAEKL-----GPDEHVYQMSGPDLLLRLNTESHQQRIDDLDEHIKMFRFVWDGMTFQPQVGMSYCYVRS 450
Cdd:COG2200 205 GGAGLLLLLLLALLLLlllarLLLALLGGGGGGFLLLLLLLAAAAAAAAALRLLLLLLLEPLLLGGGLVVVASSGGGAAA 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 451 PVNHIYLLLGELSTTAELSIMTNTPENLERSGAmNMQRNLRDKVAMMNRLQHALEHDRFCLMAQPIEGLRGD--VYHEIL 528
Cdd:COG2200 285 PDDGADAALLLAAAAAAAAAAAGGGRGRVVFFA-AAEARARRRLALESELREALEEGELRLYYQPIVDLRTGrvVGYEAL 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 529 LRLLDDDGGMINPDAFLPVAHEFGLSSRIDLWVIEHTLRFMAENRAQMPARRFALNLSASSVCRARFAQDISKLLSKYQI 608
Cdd:COG2200 364 LRWRHPDGGLISPAEFIPAAERSGLIVELDRWVLERALRQLARWPERGLDLRLSVNLSARSLLDPDFLERLLELLAEYGL 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 609 EAWQLIFEVTESQALMNAGQAEATLQNLQQLGCQIAIDDFGTGYASYARLKNVNANILKIDGSFIRNIVSNSLDYQIVAS 688
Cdd:COG2200 444 PPERLVLEITESALLEDLEAAIELLARLRALGVRIALDDFGTGYSSLSYLKRLPPDYLKIDRSFVRDIARDPRDQAIVRA 523
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 757781261 689 ICHLARMKKMQVVAEFVESEEIRHAAISLGIDYMQGYLIGVPQPLSD 735
Cdd:COG2200 524 IVALAHRLGLKVVAEGVETEEQLEALRELGCDYAQGYLFGRPLPLEE 570
|
|
| EAL |
pfam00563 |
EAL domain; This domain is found in diverse bacterial signaling proteins. It is called EAL ... |
497-730 |
9.08e-75 |
|
EAL domain; This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.
Pssm-ID: 425752 [Multi-domain] Cd Length: 235 Bit Score: 241.84 E-value: 9.08e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 497 MNRLQHALEHDRFCLMAQPIEGLRGD--VYHEILLRLLDDDGGMINPDAFLPVAHEFGLSSRIDLWVIEHTLRFMAEnRA 574
Cdd:pfam00563 1 ARALRRALENGEFVLYYQPIVDLRTGrvVGYEALLRWQHPDGGLISPARFLPLAEELGLIAELDRWVLEQALADLAQ-LQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 575 QMPARRFALNLSASSVCRARFAQDISKLLSKYQIEAWQLIFEVTESQALMNAGQAEATLQNLQQLGCQIAIDDFGTGYAS 654
Cdd:pfam00563 80 LGPDIKLSINLSPASLADPGFLELLRALLKQAGPPPSRLVLEITESDLLARLEALREVLKRLRALGIRIALDDFGTGYSS 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 757781261 655 YARLKNVNANILKIDGSFIRNIVSNSLDYQIVASICHLARMKKMQVVAEFVESEEIRHAAISLGIDYMQGYLIGVP 730
Cdd:pfam00563 160 LSYLLRLPPDFVKIDRSLIADIDKDGEARAIVRALIALAHSLGIKVVAEGVETEEQLEALRELGCDLVQGYYFSKP 235
|
|
| COG5001 |
COG5001 |
Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain ... |
486-735 |
1.04e-69 |
|
Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain [Signal transduction mechanisms];
Pssm-ID: 444025 [Multi-domain] Cd Length: 678 Bit Score: 241.60 E-value: 1.04e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 486 MQRNLRDKVAMMNRLQHALEHDRFCLMAQPIEGLR-GDVYH-EILLRLLDDDGGMINPDAFLPVAHEFGLSSRIDLWVIE 563
Cdd:COG5001 416 MDERARERLELEADLRRALERGELELHYQPQVDLAtGRIVGaEALLRWQHPERGLVSPAEFIPLAEETGLIVPLGEWVLR 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 564 HTLRFMAENRAQ-MPARRFALNLSASSVCRARFAQDISKLLSKYQIEAWQLIFEVTESQALMNAGQAEATLQNLQQLGCQ 642
Cdd:COG5001 496 EACRQLAAWQDAgLPDLRVAVNLSARQLRDPDLVDRVRRALAETGLPPSRLELEITESALLEDPEEALETLRALRALGVR 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 643 IAIDDFGTGYASYARLKNVNANILKIDGSFIRNIVSNSLDYQIVASICHLARMKKMQVVAEFVESEEIRHAAISLGIDYM 722
Cdd:COG5001 576 IALDDFGTGYSSLSYLKRLPVDTLKIDRSFVRDLAEDPDDAAIVRAIIALAHSLGLEVVAEGVETEEQLEFLRELGCDYA 655
|
250
....*....|...
gi 757781261 723 QGYLIGVPQPLSD 735
Cdd:COG5001 656 QGYLFSRPLPAEE 668
|
|
| MASE1 |
pfam05231 |
MASE1; Predicted integral membrane sensory domain found in histidine kinases, diguanylate ... |
15-320 |
1.36e-52 |
|
MASE1; Predicted integral membrane sensory domain found in histidine kinases, diguanylate cyclases and other bacterial signaling proteins. This entry also includes members of the 8 transmembrane UhpB type (8TMR-UT) domain family.
Pssm-ID: 428383 [Multi-domain] Cd Length: 299 Bit Score: 184.54 E-value: 1.36e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 15 WGLPLILPSLFLPLVSHTNTYAHVATGDVILFyLPLSLMMSLMIFFGWAALPGIVLAVFIRK-----YPQVGLAETLPVI 89
Cdd:pfam05231 1 LLLLLLLLYALLAAVSLSLALALVSSGSAPIW-LPTGLALAALLLFGRRGWPGILLGAVLASlmaglLSGLNLLLALAIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 90 AHFLIAVVLSWGGYRVFTPRRNNISHGdaqlvfprIFWQVFCPATLFLVLFQFAAFVGLYESKLSLMGGTPFNINALINY 169
Cdd:pfam05231 80 AVNALEALLGAALLRRLLPGRNRLQRL--------RFWLRLVIPGAIIAALLLAIIGLALLLLLGLIPLAPFSIVWLTWW 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 170 QGILVGNLIGVPLFYFIIRVIRNPLHLRGYYSQLKLQFDAKASQKEIIIWLLVLSALMSLLCMPlNENSSIFstnytmSL 249
Cdd:pfam05231 152 LGSATGVLVVTPLLLLLRRYLRLRHRLRLWYERDLAPAAAKLLLLFALLLLLILSLLLLLLCMP-EINYPLG------YL 224
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 757781261 250 LLPVMLWGAMRYGYRFISL---LWAPVLIIAIHNYRSYTPYYSGYDVQLAITSSSFLVFSFIVNY-MAVLATRQR 320
Cdd:pfam05231 225 LLPPLLWAAFRFGVRGGSLaalLLAVLLILFTLQGGGPFLQTSGDESSQAILLQLFLAILALVALlVSAAISEQR 299
|
|
| PRK09776 |
PRK09776 |
putative diguanylate cyclase; Provisional |
291-734 |
1.12e-43 |
|
putative diguanylate cyclase; Provisional
Pssm-ID: 182070 [Multi-domain] Cd Length: 1092 Bit Score: 170.24 E-value: 1.12e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 291 YDVQLAITSSSFLVFSFIvnyMAVLATrQRIVSSRA--RRLAFL---DPVVHLPNlRA-----LNRALRNT----PWSAL 356
Cdd:PRK09776 625 YDVHYSITPLSTLDGENI---GSVLVI-QDVTESRKmlRQLSYSashDALTHLAN-RAsfekqLRRLLQTVnsthQRHAL 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 357 CFLRVPELEFLVKNYG-----IMLRiqykqQLSHWIAEKLGPDEHVYQMSGPD---LLLRLNTESHQQRIDDLDEHIKMF 428
Cdd:PRK09776 700 VFIDLDRFKAVNDSAGhaagdALLR-----ELASLMLSMLRSSDVLARLGGDEfglLLPDCNVESARFIATRIISAINDY 774
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 429 RFVWDGMTFQpqVGMSYcyvrspvnHIYLLLGELSTTAEL----SIMTNTPENLERSGAMNMQRN---LRDKVAMMNR-- 499
Cdd:PRK09776 775 HFPWEGRVYR--VGASA--------GITLIDANNHQASEVmsqaDIACYAAKNAGRGRVTVYEPQqaaAHSEHRALSLae 844
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 500 -LQHALEHDRFCLMAQPIEGL--RGDVYHEILLRLLDDDGGMINPDAFLPVAHEFGLSSRIDLWVIEHTLRFMAENRAQm 576
Cdd:PRK09776 845 qWRMIKENQLMMLAHGVASPRipEARNHWLISLRLWDPEGEIIDEGAFRPAAEDPALMHALDRRVIHEFFRQAAKAVAS- 923
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 577 PARRFALNLSASSVCRARFAQDISKLLSKYQIEAWQLIFEVTESQALMNAGQAEATLQNLQQLGCQIAIDDFGTGYASYA 656
Cdd:PRK09776 924 KGLSIALPLSVAGLSSPTLLPFLLEQLENSPLPPRLLHLEITETALLNHAESASRLVQKLRLAGCRVVLSDFGRGLSSFN 1003
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757781261 657 RLKNVNANILKIDGSFIRNIVSNSLDYQIVASICHLARMKKMQVVAEFVESEEIRHAAISLGIDYMQGYLIGVPQPLS 734
Cdd:PRK09776 1004 YLKAFMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLGMKTIAGPVELPLVLDTLSGIGVDLAYGYAIARPQPLD 1081
|
|
| GGDEF |
smart00267 |
diguanylate cyclase; Diguanylate cyclase, present in a variety of bacteria. |
328-461 |
9.78e-16 |
|
diguanylate cyclase; Diguanylate cyclase, present in a variety of bacteria.
Pssm-ID: 128563 [Multi-domain] Cd Length: 163 Bit Score: 75.36 E-value: 9.78e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 328 RLAFLDPVVHLPNLRALNRAL--------RNTPWSALCFLRVPELEFLVKNYGIMLRIQYKQQLSHWIAEKLGPDEHVYQ 399
Cdd:smart00267 1 RLAFRDPLTGLPNRRYFEEELeqelqraqRQGSPFALLLIDLDNFKDINDTYGHAVGDELLQEVAQRLSSCLRPGDLLAR 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757781261 400 MSGPDLLLRLNTESHQQRIDDLDEHIKMFRFVWDGMTFQPQVGMSY--CYVRSPVNHIYLLLGE 461
Cdd:smart00267 81 LGGDEFALLLPETSLEEAIALAERILQQLREPIIIHGIPLYLTISIgvAAYPNPGEDAEDLLKR 144
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| EAL |
smart00052 |
Putative diguanylate phosphodiesterase; Putative diguanylate phosphodiesterase, present in a ... |
497-735 |
1.18e-85 |
|
Putative diguanylate phosphodiesterase; Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Pssm-ID: 214491 [Multi-domain] Cd Length: 242 Bit Score: 270.63 E-value: 1.18e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 497 MNRLQHALEHDRFCLMAQPIEGLRG--DVYHEILLRLLDDDGGMINPDAFLPVAHEFGLSSRIDLWVIEHTLRFMAENRA 574
Cdd:smart00052 1 ERELRQALENGQFLLYYQPIVSLRTgrLVGVEALIRWQHPEGGIISPDEFIPLAEETGLIVPLGRWVLEQACQQLAEWQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 575 QMPAR-RFALNLSASSVCRARFAQDISKLLSKYQIEAWQLIFEVTESQALMNAGQAEATLQNLQQLGCQIAIDDFGTGYA 653
Cdd:smart00052 81 QGPPPlLISINLSARQLISPDLVPRVLELLEETGLPPQRLELEITESVLLDDDESAVATLQRLRELGVRIALDDFGTGYS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 654 SYARLKNVNANILKIDGSFIRNIVSNSLDYQIVASICHLARMKKMQVVAEFVESEEIRHAAISLGIDYMQGYLIGVPQPL 733
Cdd:smart00052 161 SLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVETPEQLDLLRSLGCDYGQGYLFSRPLPL 240
|
..
gi 757781261 734 SD 735
Cdd:smart00052 241 DD 242
|
|
| EAL |
cd01948 |
EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL ... |
498-735 |
1.53e-85 |
|
EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Pssm-ID: 238923 [Multi-domain] Cd Length: 240 Bit Score: 270.19 E-value: 1.53e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 498 NRLQHALEHDRFCLMAQPIEGLRGD--VYHEILLRLLDDDGGMINPDAFLPVAHEFGLSSRIDLWVIEHTLRFMAENRAQ 575
Cdd:cd01948 1 ADLRRALERGEFELYYQPIVDLRTGriVGYEALLRWRHPEGGLISPAEFIPLAEETGLIVELGRWVLEEACRQLARWQAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 576 MPARRFALNLSASSVCRARFAQDISKLLSKYQIEAWQLIFEVTESQALMNAGQAEATLQNLQQLGCQIAIDDFGTGYASY 655
Cdd:cd01948 81 GPDLRLSVNLSARQLRDPDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGVRIALDDFGTGYSSL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 656 ARLKNVNANILKIDGSFIRNIVSNSLDYQIVASICHLARMKKMQVVAEFVESEEIRHAAISLGIDYMQGYLIGVPQPLSD 735
Cdd:cd01948 161 SYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGVETEEQLELLRELGCDYVQGYLFSRPLPAEE 240
|
|
| EAL |
COG2200 |
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) ... |
216-735 |
1.30e-83 |
|
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) [Signal transduction mechanisms];
Pssm-ID: 441802 [Multi-domain] Cd Length: 576 Bit Score: 276.67 E-value: 1.30e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 216 IIIWLLVLSALMSLLCMPLNENSSIFSTNYTMSLLLPVMLWGAMRYGYRFISLLWAPVLIIAIHNYRSYTPYYSGYDVQL 295
Cdd:COG2200 45 VAALLAALLAALLLLLALALLLLLLLLLLLLLLLLLLLLALLLLLLLLLLLLLLLLLLLALLLAALLALLLLLLLLLLLL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 296 AITSSSFLVFSFIVNYMAVLATRQRIVSSRARRLAFLDPVVHLPNLRALNRALRNTPWSALCFLRVPELEFLVKNYGIML 375
Cdd:COG2200 125 LLSLLLLLVLVLLRLALELLLALLLLALLALLDLLLLLLLRRLLLLLLLLLLLLLLALALLALLLLLLLLLLLLLDNDGL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 376 RIQYKQQLSHWIAEKL-----GPDEHVYQMSGPDLLLRLNTESHQQRIDDLDEHIKMFRFVWDGMTFQPQVGMSYCYVRS 450
Cdd:COG2200 205 GGAGLLLLLLLALLLLlllarLLLALLGGGGGGFLLLLLLLAAAAAAAAALRLLLLLLLEPLLLGGGLVVVASSGGGAAA 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 451 PVNHIYLLLGELSTTAELSIMTNTPENLERSGAmNMQRNLRDKVAMMNRLQHALEHDRFCLMAQPIEGLRGD--VYHEIL 528
Cdd:COG2200 285 PDDGADAALLLAAAAAAAAAAAGGGRGRVVFFA-AAEARARRRLALESELREALEEGELRLYYQPIVDLRTGrvVGYEAL 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 529 LRLLDDDGGMINPDAFLPVAHEFGLSSRIDLWVIEHTLRFMAENRAQMPARRFALNLSASSVCRARFAQDISKLLSKYQI 608
Cdd:COG2200 364 LRWRHPDGGLISPAEFIPAAERSGLIVELDRWVLERALRQLARWPERGLDLRLSVNLSARSLLDPDFLERLLELLAEYGL 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 609 EAWQLIFEVTESQALMNAGQAEATLQNLQQLGCQIAIDDFGTGYASYARLKNVNANILKIDGSFIRNIVSNSLDYQIVAS 688
Cdd:COG2200 444 PPERLVLEITESALLEDLEAAIELLARLRALGVRIALDDFGTGYSSLSYLKRLPPDYLKIDRSFVRDIARDPRDQAIVRA 523
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 757781261 689 ICHLARMKKMQVVAEFVESEEIRHAAISLGIDYMQGYLIGVPQPLSD 735
Cdd:COG2200 524 IVALAHRLGLKVVAEGVETEEQLEALRELGCDYAQGYLFGRPLPLEE 570
|
|
| EAL |
pfam00563 |
EAL domain; This domain is found in diverse bacterial signaling proteins. It is called EAL ... |
497-730 |
9.08e-75 |
|
EAL domain; This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.
Pssm-ID: 425752 [Multi-domain] Cd Length: 235 Bit Score: 241.84 E-value: 9.08e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 497 MNRLQHALEHDRFCLMAQPIEGLRGD--VYHEILLRLLDDDGGMINPDAFLPVAHEFGLSSRIDLWVIEHTLRFMAEnRA 574
Cdd:pfam00563 1 ARALRRALENGEFVLYYQPIVDLRTGrvVGYEALLRWQHPDGGLISPARFLPLAEELGLIAELDRWVLEQALADLAQ-LQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 575 QMPARRFALNLSASSVCRARFAQDISKLLSKYQIEAWQLIFEVTESQALMNAGQAEATLQNLQQLGCQIAIDDFGTGYAS 654
Cdd:pfam00563 80 LGPDIKLSINLSPASLADPGFLELLRALLKQAGPPPSRLVLEITESDLLARLEALREVLKRLRALGIRIALDDFGTGYSS 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 757781261 655 YARLKNVNANILKIDGSFIRNIVSNSLDYQIVASICHLARMKKMQVVAEFVESEEIRHAAISLGIDYMQGYLIGVP 730
Cdd:pfam00563 160 LSYLLRLPPDFVKIDRSLIADIDKDGEARAIVRALIALAHSLGIKVVAEGVETEEQLEALRELGCDLVQGYYFSKP 235
|
|
| COG5001 |
COG5001 |
Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain ... |
486-735 |
1.04e-69 |
|
Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain [Signal transduction mechanisms];
Pssm-ID: 444025 [Multi-domain] Cd Length: 678 Bit Score: 241.60 E-value: 1.04e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 486 MQRNLRDKVAMMNRLQHALEHDRFCLMAQPIEGLR-GDVYH-EILLRLLDDDGGMINPDAFLPVAHEFGLSSRIDLWVIE 563
Cdd:COG5001 416 MDERARERLELEADLRRALERGELELHYQPQVDLAtGRIVGaEALLRWQHPERGLVSPAEFIPLAEETGLIVPLGEWVLR 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 564 HTLRFMAENRAQ-MPARRFALNLSASSVCRARFAQDISKLLSKYQIEAWQLIFEVTESQALMNAGQAEATLQNLQQLGCQ 642
Cdd:COG5001 496 EACRQLAAWQDAgLPDLRVAVNLSARQLRDPDLVDRVRRALAETGLPPSRLELEITESALLEDPEEALETLRALRALGVR 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 643 IAIDDFGTGYASYARLKNVNANILKIDGSFIRNIVSNSLDYQIVASICHLARMKKMQVVAEFVESEEIRHAAISLGIDYM 722
Cdd:COG5001 576 IALDDFGTGYSSLSYLKRLPVDTLKIDRSFVRDLAEDPDDAAIVRAIIALAHSLGLEVVAEGVETEEQLEFLRELGCDYA 655
|
250
....*....|...
gi 757781261 723 QGYLIGVPQPLSD 735
Cdd:COG5001 656 QGYLFSRPLPAEE 668
|
|
| MASE1 |
pfam05231 |
MASE1; Predicted integral membrane sensory domain found in histidine kinases, diguanylate ... |
15-320 |
1.36e-52 |
|
MASE1; Predicted integral membrane sensory domain found in histidine kinases, diguanylate cyclases and other bacterial signaling proteins. This entry also includes members of the 8 transmembrane UhpB type (8TMR-UT) domain family.
Pssm-ID: 428383 [Multi-domain] Cd Length: 299 Bit Score: 184.54 E-value: 1.36e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 15 WGLPLILPSLFLPLVSHTNTYAHVATGDVILFyLPLSLMMSLMIFFGWAALPGIVLAVFIRK-----YPQVGLAETLPVI 89
Cdd:pfam05231 1 LLLLLLLLYALLAAVSLSLALALVSSGSAPIW-LPTGLALAALLLFGRRGWPGILLGAVLASlmaglLSGLNLLLALAIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 90 AHFLIAVVLSWGGYRVFTPRRNNISHGdaqlvfprIFWQVFCPATLFLVLFQFAAFVGLYESKLSLMGGTPFNINALINY 169
Cdd:pfam05231 80 AVNALEALLGAALLRRLLPGRNRLQRL--------RFWLRLVIPGAIIAALLLAIIGLALLLLLGLIPLAPFSIVWLTWW 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 170 QGILVGNLIGVPLFYFIIRVIRNPLHLRGYYSQLKLQFDAKASQKEIIIWLLVLSALMSLLCMPlNENSSIFstnytmSL 249
Cdd:pfam05231 152 LGSATGVLVVTPLLLLLRRYLRLRHRLRLWYERDLAPAAAKLLLLFALLLLLILSLLLLLLCMP-EINYPLG------YL 224
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 757781261 250 LLPVMLWGAMRYGYRFISL---LWAPVLIIAIHNYRSYTPYYSGYDVQLAITSSSFLVFSFIVNY-MAVLATRQR 320
Cdd:pfam05231 225 LLPPLLWAAFRFGVRGGSLaalLLAVLLILFTLQGGGPFLQTSGDESSQAILLQLFLAILALVALlVSAAISEQR 299
|
|
| YjcC |
COG4943 |
Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains [Signal ... |
488-735 |
3.73e-52 |
|
Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains [Signal transduction mechanisms];
Pssm-ID: 443970 [Multi-domain] Cd Length: 528 Bit Score: 189.74 E-value: 3.73e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 488 RNLRDKVAMMNRLQHALEHDRFCLMAQPIEGLR-GDVYH-EILLRLLDDDGGMINPDAFLPVAHEFGLSSRIDLWVIEHT 565
Cdd:COG4943 264 RLLRRRLSPRRRLRRAIKRREFYVHYQPIVDLKtGRCVGaEALVRWRDPDGSVISPDIFIPLAEQSGLISPLTRQVIEQV 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 566 LRFMAENRAQMPARRFALNLSASSVCRARFAQDISKLLSKYQIEAWQLIFEVTESQaLMNAGQAEATLQNLQQLGCQIAI 645
Cdd:COG4943 344 FRDLGDLLAADPDFHISINLSASDLLSPRFLDDLERLLARTGVAPQQIVLEITERG-FIDPAKARAVIAALREAGHRIAI 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 646 DDFGTGYASYARLKNVNANILKIDGSFIRNIVSNSLDYQIVASICHLARMKKMQVVAEFVESEEIRHAAISLGIDYMQGY 725
Cdd:COG4943 423 DDFGTGYSSLSYLQTLPVDILKIDKSFVDAIGTDSANSAVVPHIIEMAKTLNLDVVAEGVETEEQADYLRARGVQYGQGW 502
|
250
....*....|
gi 757781261 726 LIGVPQPLSD 735
Cdd:COG4943 503 LFAKPLPAEE 512
|
|
| PRK09776 |
PRK09776 |
putative diguanylate cyclase; Provisional |
291-734 |
1.12e-43 |
|
putative diguanylate cyclase; Provisional
Pssm-ID: 182070 [Multi-domain] Cd Length: 1092 Bit Score: 170.24 E-value: 1.12e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 291 YDVQLAITSSSFLVFSFIvnyMAVLATrQRIVSSRA--RRLAFL---DPVVHLPNlRA-----LNRALRNT----PWSAL 356
Cdd:PRK09776 625 YDVHYSITPLSTLDGENI---GSVLVI-QDVTESRKmlRQLSYSashDALTHLAN-RAsfekqLRRLLQTVnsthQRHAL 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 357 CFLRVPELEFLVKNYG-----IMLRiqykqQLSHWIAEKLGPDEHVYQMSGPD---LLLRLNTESHQQRIDDLDEHIKMF 428
Cdd:PRK09776 700 VFIDLDRFKAVNDSAGhaagdALLR-----ELASLMLSMLRSSDVLARLGGDEfglLLPDCNVESARFIATRIISAINDY 774
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 429 RFVWDGMTFQpqVGMSYcyvrspvnHIYLLLGELSTTAEL----SIMTNTPENLERSGAMNMQRN---LRDKVAMMNR-- 499
Cdd:PRK09776 775 HFPWEGRVYR--VGASA--------GITLIDANNHQASEVmsqaDIACYAAKNAGRGRVTVYEPQqaaAHSEHRALSLae 844
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 500 -LQHALEHDRFCLMAQPIEGL--RGDVYHEILLRLLDDDGGMINPDAFLPVAHEFGLSSRIDLWVIEHTLRFMAENRAQm 576
Cdd:PRK09776 845 qWRMIKENQLMMLAHGVASPRipEARNHWLISLRLWDPEGEIIDEGAFRPAAEDPALMHALDRRVIHEFFRQAAKAVAS- 923
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 577 PARRFALNLSASSVCRARFAQDISKLLSKYQIEAWQLIFEVTESQALMNAGQAEATLQNLQQLGCQIAIDDFGTGYASYA 656
Cdd:PRK09776 924 KGLSIALPLSVAGLSSPTLLPFLLEQLENSPLPPRLLHLEITETALLNHAESASRLVQKLRLAGCRVVLSDFGRGLSSFN 1003
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757781261 657 RLKNVNANILKIDGSFIRNIVSNSLDYQIVASICHLARMKKMQVVAEFVESEEIRHAAISLGIDYMQGYLIGVPQPLS 734
Cdd:PRK09776 1004 YLKAFMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLGMKTIAGPVELPLVLDTLSGIGVDLAYGYAIARPQPLD 1081
|
|
| PRK10060 |
PRK10060 |
cyclic di-GMP phosphodiesterase; |
500-732 |
8.26e-36 |
|
cyclic di-GMP phosphodiesterase;
Pssm-ID: 236645 [Multi-domain] Cd Length: 663 Bit Score: 144.05 E-value: 8.26e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 500 LQHALEHDRFCLMAQPIEGLRGDVYH-EILLRLLDDDGGMINPDAFLPVAHEFGLSSRIDLWVIEHTLRFMAENRAQMPA 578
Cdd:PRK10060 413 LRKALENDQLVIHYQPKITWRGEVRSlEALVRWQSPERGLIPPLEFISYAEESGLIVPLGRWVMLDVVRQVAKWRDKGIN 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 579 RRFALNLSASSVCRARFAQDISKLLSKYQIEAWQLIFEVTESQALMNAGQAEATLQNLQQLGCQIAIDDFGTGYASYARL 658
Cdd:PRK10060 493 LRVAVNVSARQLADQTIFTALKQALQELNFEYCPIDVELTESCLIENEELALSVIQQFSQLGAQVHLDDFGTGYSSLSQL 572
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757781261 659 KNVNANILKIDGSFIRNIVSNSLDYQIVASICHLARMKKMQVVAEFVESEEIRHAAISLGIDYMQGYLIGVPQP 732
Cdd:PRK10060 573 ARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVETAKEDAFLTKNGVNERQGFLFAKPMP 646
|
|
| PRK11829 |
PRK11829 |
biofilm formation regulator HmsP; Provisional |
498-737 |
1.82e-34 |
|
biofilm formation regulator HmsP; Provisional
Pssm-ID: 183329 [Multi-domain] Cd Length: 660 Bit Score: 140.08 E-value: 1.82e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 498 NRLQHALEHDRFCLMAQPIEGLRGD--VYHEILLRLLDDDGGMINPDAFLPVAHEFGLSSRIDLWVIEHTLRFMAENRAQ 575
Cdd:PRK11829 408 NDLLQAIENHDFTLFLQPQWDMKRQqvIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWVLEEACRILADWKAR 487
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 576 MPARRFALNLSASSVCRARFAQDISKLLSKYQIEAWQLIFEVTESQALMNAGQAEATLQNLQQLGCQIAIDDFGTGYAS- 654
Cdd:PRK11829 488 GVSLPLSVNISGLQVQNKQFLPHLKTLISHYHIDPQQLLLEITETAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSl 567
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 655 -YAR-LKNVNANILKIDGSFIRNIvsnSLDYQIVASICHLARMKKMQVVAEFVESEEIRHAAISLGIDYMQGYLIGVPQP 732
Cdd:PRK11829 568 rYLNhLKSLPIHMIKLDKSFVKNL---PEDDAIARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCGQGFLFSPPLP 644
|
....*
gi 757781261 733 LSDTL 737
Cdd:PRK11829 645 RAEFE 649
|
|
| PRK13561 |
PRK13561 |
putative diguanylate cyclase; Provisional |
481-734 |
2.06e-34 |
|
putative diguanylate cyclase; Provisional
Pssm-ID: 184143 [Multi-domain] Cd Length: 651 Bit Score: 139.85 E-value: 2.06e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 481 SGAMNMQRNLRDKV-----AMMNRLQ----------HALEHDRFCLMAQP-IEGLRGDVYH-EILLRLLDDDGGMINPDA 543
Cdd:PRK13561 371 SAAFTARRKGKNQIqffdpQQMEAAQkrlteesdilNALENHQFAIWLQPqVEMRSGKLVSaEALLRMQQPDGSWDLPEG 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 544 FLPVAHEFGLSSRIDLWVIEHTLRFMAENRAQMPARRFALNLSASSVCRARFAQDISKLLSKYQIEAWQLIFEVTESQAL 623
Cdd:PRK13561 451 LIDRIESCGLMVTVGHWVLEESCRLLAAWQERGIMLPLSVNLSALQLMHPNMVADMLELLTRYRIQPGTLILEVTESRRI 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 624 MNAGQAEATLQNLQQLGCQIAIDDFGTGYASYARL---KNVNANILKIDGSFIRNIvsnSLDYQIVASICHLARMKKMQV 700
Cdd:PRK13561 531 DDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLqhmKSLPIDVLKIDKMFVDGL---PEDDSMVAAIIMLAQSLNLQV 607
|
250 260 270
....*....|....*....|....*....|....
gi 757781261 701 VAEFVESEEIRHAAISLGIDYMQGYLIGVPQPLS 734
Cdd:PRK13561 608 IAEGVETEAQRDWLLKAGVGIAQGFLFARALPIE 641
|
|
| PRK11359 |
PRK11359 |
cyclic-di-GMP phosphodiesterase; Provisional |
311-735 |
5.62e-31 |
|
cyclic-di-GMP phosphodiesterase; Provisional
Pssm-ID: 183097 [Multi-domain] Cd Length: 799 Bit Score: 129.89 E-value: 5.62e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 311 YMAVLATRQRIVSSRARRLAFLDPVVHLPN---LRA-LNRALRNTPWSALCFLRVPELEFLVKNYGIMLRIQYKQQLSHW 386
Cdd:PRK11359 357 HLAALALEQEKSRQHIEQLIQFDPLTGLPNrnnLHNyLDDLVDKAVSPVVYLIGVDHFQDVIDSLGYAWADQALLEVVNR 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 387 IAEKLGPDEHVYQMSGPDLLLrLNTESHQQRIDDLDEHIKMF---RFVWDGMTFQPQ--VGMSYcyvRSPVNHIYLLlge 461
Cdd:PRK11359 437 FREKLKPDQYLCRIEGTQFVL-VSLENDVSNITQIADELRNVvskPIMIDDKPFPLTlsIGISY---DVGKNRDYLL--- 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 462 lsTTAElSIMTNTPEN-----LERSGAMNmqRNLRDKVAMMNRLQHALEHDRFCLMAQP-IEGLRGDVY-HEILLRLLDD 534
Cdd:PRK11359 510 --STAH-NAMDYIRKNggngwQFFSPAMN--EMVKERLVLGAALKEAISNNQLKLVYQPqIFAETGELYgIEALARWHDP 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 535 DGGMINPDAFLPVAHEFGLSSRIDLWVIEHTLRFMAENR---AQMPArrFALNLSASSVCRARFAQDISKLLSKYQIEAW 611
Cdd:PRK11359 585 LHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRsqnIHIPA--LSVNLSALHFRSNQLPNQVSDAMQAWGIDGH 662
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 612 QLIFEVTESQALMNAGQAEATLQNLQQLGCQIAIDDFGTGYASYARLKNVNANILKIDGSFIRNIVSNSLDYQIVASICH 691
Cdd:PRK11359 663 QLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITS 742
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 757781261 692 LARMKKMQVVAEFVESEEIRHAAISLGIDYMQGYLIGVPQPLSD 735
Cdd:PRK11359 743 IGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEE 786
|
|
| PRK10551 |
PRK10551 |
cyclic di-GMP phosphodiesterase; |
526-738 |
5.36e-25 |
|
cyclic di-GMP phosphodiesterase;
Pssm-ID: 182541 [Multi-domain] Cd Length: 518 Bit Score: 109.70 E-value: 5.36e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 526 EILLRLLDDDGGMINPDAFLPVAHefglSSRIDLWVIEHTLRFMAENRAQM-----PARRFALNLSASSVCRARFAQDIS 600
Cdd:PRK10551 296 EALLRWRHPTAGEIPPDAFINYAE----AQKLIVPLTQHLFELIARDAAELqkvlpVGAKLGINISPAHLHSDSFKADVQ 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 601 KLLSKYQIEAWQLIFEVTEsQALMNAGQAEATLQNLQQLGCQIAIDDFGTGYASYARLKNVNANILKIDGSFIRNIVSNS 680
Cdd:PRK10551 372 RLLASLPADHFQIVLEITE-RDMVQEEEATKLFAWLHSQGIEIAIDDFGTGHSALIYLERFTLDYLKIDRGFIQAIGTET 450
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 757781261 681 LDYQIVASICHLARMKKMQVVAEFVESEEIRHAAISLGIDYMQGYLIGVPQPLSDTLK 738
Cdd:PRK10551 451 VTSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLRERGVNFLQGYWISRPLPLEDFVR 508
|
|
| PRK11059 |
PRK11059 |
regulatory protein CsrD; Provisional |
500-733 |
1.83e-16 |
|
regulatory protein CsrD; Provisional
Pssm-ID: 236833 [Multi-domain] Cd Length: 640 Bit Score: 83.37 E-value: 1.83e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 500 LQHALEHDRFCLMAQPIEGLRGDVYH-EILLRLLDDDGGMINPDAFLPVAHEFGLSSRIDLWVIEHTLRFMaenrAQMPA 578
Cdd:PRK11059 408 LEQTLVRGGPRLYQQPAVTRDGKVHHrELFCRIRDGQGELLSAELFMPMVQQLGLSEQYDRQVIERVLPLL----RYWPE 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 579 RRFALNLSASSVCRARFAQDI-SKLLSKYQIEAWQLIFEVTESQALMNAGQAEATLQNLQQLGCQIAIDDFGTGYASYAR 657
Cdd:PRK11059 484 ENLSINLSVDSLLSRAFQRWLrDTLLQCPRSQRKRLIFELAEADVCQHISRLRPVLRMLRGLGCRLAVDQAGLTVVSTSY 563
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 658 LKNVNANILKIDGSFIRNI---VSNSLdyqIVAS-ICHLARMkKMQVVAEFVESEEIRHAAISLGIDYMQGYLIGVPQPL 733
Cdd:PRK11059 564 IKELNVELIKLHPSLVRNIhkrTENQL---FVRSlVGACAGT-ETQVFATGVESREEWQTLQELGVSGGQGDFFAESQPL 639
|
|
| GGDEF |
smart00267 |
diguanylate cyclase; Diguanylate cyclase, present in a variety of bacteria. |
328-461 |
9.78e-16 |
|
diguanylate cyclase; Diguanylate cyclase, present in a variety of bacteria.
Pssm-ID: 128563 [Multi-domain] Cd Length: 163 Bit Score: 75.36 E-value: 9.78e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 328 RLAFLDPVVHLPNLRALNRAL--------RNTPWSALCFLRVPELEFLVKNYGIMLRIQYKQQLSHWIAEKLGPDEHVYQ 399
Cdd:smart00267 1 RLAFRDPLTGLPNRRYFEEELeqelqraqRQGSPFALLLIDLDNFKDINDTYGHAVGDELLQEVAQRLSSCLRPGDLLAR 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757781261 400 MSGPDLLLRLNTESHQQRIDDLDEHIKMFRFVWDGMTFQPQVGMSY--CYVRSPVNHIYLLLGE 461
Cdd:smart00267 81 LGGDEFALLLPETSLEEAIALAERILQQLREPIIIHGIPLYLTISIgvAAYPNPGEDAEDLLKR 144
|
|
| YuxH |
COG3434 |
c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains [Signal transduction ... |
514-734 |
1.26e-09 |
|
c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains [Signal transduction mechanisms];
Pssm-ID: 442660 [Multi-domain] Cd Length: 407 Bit Score: 60.97 E-value: 1.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 514 QPIEGLRGDVY-HEILLRLldddggmiNPDAFLPVAHEFGLSSRidlwVIEHTLRFMAENRAQMPARRFaLNLSASSvcr 592
Cdd:COG3434 9 QPILDRDQRVVgYELLFRS--------GLENSAPDVDGDQATAR----VLLNAFLEIGLDRLLGGKLAF-INFTEEL--- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 593 arFAQDISKLLSKYQIeawqlIFEVTE----SQALMnagqaeATLQNLQQLGCQIAIDDFgTGYASYARLKNVnANILKI 668
Cdd:COG3434 73 --LLSDLPELLPPERV-----VLEILEdvepDEELL------EALKELKEKGYRIALDDF-VLDPEWDPLLPL-ADIIKI 137
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 757781261 669 DgsfirniVSNSLDYQIVASICHLARMKKmQVVAEFVESEEIRHAAISLGIDYMQGYLIGVPQPLS 734
Cdd:COG3434 138 D-------VLALDLEELAELVARLKRYGI-KLLAEKVETREEFELCKELGFDLFQGYFFSKPEILK 195
|
|
| MASE1 |
COG3447 |
Integral membrane sensor domain MASE1 [Signal transduction mechanisms]; |
41-574 |
2.55e-04 |
|
Integral membrane sensor domain MASE1 [Signal transduction mechanisms];
Pssm-ID: 442670 [Multi-domain] Cd Length: 637 Bit Score: 44.41 E-value: 2.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 41 GDVILFYLPLSLMMSLMIFFGWAALPGIVLAVFIRKYPQVGLAETLPVIAHF----LIAVVLSWGGYRVFTPRRNNISHG 116
Cdd:COG3447 39 GGVSPIWPPAGVALAALLRFGRRAWPGILLGALLANLLAGLTGDPLLLALLIalgnTLEALLAAWLLRRLLGFSPPLQRL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 117 DAQLVFprIFWQVFCPATLflvlfqfAAFVG-LYESKLSLMGGTPFNINALINYQGILVGNLIGVPLFYFIIRVIRNPLH 195
Cdd:COG3447 119 RDVLRF--LLAAALLAPLI-------SALLGaLALALAGLLPGSPFLSSWLTWWLGDALGILLVTPLLLAWRRPRLRRLR 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 196 LRGYYSqlklqfdakasqkeiIIWLLVLSALMSLLCMPLNENSSIFstnytmsLLLPVMLWGAMRYGYRFISLLWAPVLI 275
Cdd:COG3447 190 RRRLLE---------------ALALLALLLLVSWLVFGLLGYPLAF-------LLFPLLLWAALRFGLRGAALAVLLLAL 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 276 IAI-HNYRSYTPYYSGY-DVQLAITSSSFLVFSFIVNYMAVLATRQRIVSSRARRLAFLDPVVHLpnLRALNRALRNTPW 353
Cdd:COG3447 248 IAIlATALGLGPFASLSpNQSLLLLQLFLAVLALTGLLLAAALAERRRQRLRERELALRAALELL--ALGLLLAALDDAL 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 354 SALCFLRVPELEFLVKNYGIMLRIQYKQQLSHWIAEKLGPDEHVYQMSGPDLLLRLNTESHQQRIDDLDEHIKMFRFVWD 433
Cdd:COG3447 326 LLLNARGLLLLALSLAALLLLRLALLLLLLALDALLLLLADDDRGELRGDLLRRRGATRLGAVVARLLRRSGGRGEEVVV 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 434 GMTFQPQVGMSYCYVRSPVNHIYLLLGELSTTAELSIMTNTPENLERSGAMNMQRNLRDKVAMMNRLQHALEHDRfclma 513
Cdd:COG3447 406 LLVIAQVEEALELALRERREERLLERLALALELLAITAALLAAALLLALADLLLLLLAEAAQLLARALLLGLDRL----- 480
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 757781261 514 QPIEGLRGDVYHEILLRLLDDDGGMINPDAFLPVAHEFGLSSRIDLWVIEHTLRFMAENRA 574
Cdd:COG3447 481 LADAALAALAALADLLGALLSAGLRRRGGRRLGARLIRSLLSRVLAELGAVELLLALIADL 541
|
|
| GGDEF |
COG2199 |
GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants ... |
216-438 |
3.52e-04 |
|
GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants [Signal transduction mechanisms];
Pssm-ID: 441801 [Multi-domain] Cd Length: 275 Bit Score: 43.04 E-value: 3.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 216 IIIWLLVLSALMSLLCMPLNENSSIFSTNYTMSLLLPVMLWGAMRYGYRFISLLWAPVLIIAIHNYRSYTPYYSGYDVQL 295
Cdd:COG2199 1 VLLLLLLLLALLLLLLLLLLSLLLALLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVLLLLALGLLLLALLLLSLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757781261 296 AITSSSFLVFSFIVNYMAvLATRQRIVSSRARRLAFLDPVVHLPNLRALNRAL--------RNTPWSALCFLRVPELEFL 367
Cdd:COG2199 81 LELLLLLLALLLLLLALE-DITELRRLEERLRRLATHDPLTGLPNRRAFEERLerelararREGRPLALLLIDLDHFKRI 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757781261 368 VKNYGIMLRIQYKQQLSHWIAEKLGPDEHVYQMSGPD---LLLRLNTESHQQRIDDLDEHIKMFRFVWDGMTFQ 438
Cdd:COG2199 160 NDTYGHAAGDEVLKEVARRLRASLRESDLVARLGGDEfavLLPGTDLEEAEALAERLREALEQLPFELEGKELR 233
|
|
| |
