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Conserved domains on  [gi|757799317|ref|WP_043016519|]
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MULTISPECIES: excisionase family protein [Citrobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1233 super family cl06047
Putative excisionase (DUF1233); This family consists of several putative phage excisionase ...
 4-69 5.03e-22

Putative excisionase (DUF1233); This family consists of several putative phage excisionase proteins of around 80 residues in length.


The actual alignment was detected with superfamily member pfam06806:

Pssm-ID: 399649  Cd Length: 70  Bit Score: 80.19  E-value: 5.03e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 757799317   4 IVFNEEWVVETRLSERTGLSKGQIKNYRLGVWIEGVHFKHLTALGEtSSSNGVLWYNYPRINKFVQ 69
Cdd:pfam06806  3 QIFPSKWVSENVLMAVTGLKPGTIKNARKKSWMEGREYKHVSPDGN-PKLNSPCLYNIPAINQWIE 67
 
Name Accession Description Interval E-value
DUF1233 pfam06806
Putative excisionase (DUF1233); This family consists of several putative phage excisionase ...
 4-69 5.03e-22

Putative excisionase (DUF1233); This family consists of several putative phage excisionase proteins of around 80 residues in length.


Pssm-ID: 399649  Cd Length: 70  Bit Score: 80.19  E-value: 5.03e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 757799317   4 IVFNEEWVVETRLSERTGLSKGQIKNYRLGVWIEGVHFKHLTALGEtSSSNGVLWYNYPRINKFVQ 69
Cdd:pfam06806  3 QIFPSKWVSENVLMAVTGLKPGTIKNARKKSWMEGREYKHVSPDGN-PKLNSPCLYNIPAINQWIE 67
 
Name Accession Description Interval E-value
DUF1233 pfam06806
Putative excisionase (DUF1233); This family consists of several putative phage excisionase ...
 4-69 5.03e-22

Putative excisionase (DUF1233); This family consists of several putative phage excisionase proteins of around 80 residues in length.


Pssm-ID: 399649  Cd Length: 70  Bit Score: 80.19  E-value: 5.03e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 757799317   4 IVFNEEWVVETRLSERTGLSKGQIKNYRLGVWIEGVHFKHLTALGEtSSSNGVLWYNYPRINKFVQ 69
Cdd:pfam06806  3 QIFPSKWVSENVLMAVTGLKPGTIKNARKKSWMEGREYKHVSPDGN-PKLNSPCLYNIPAINQWIE 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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