|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
1-257 |
0e+00 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 516.44 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSENKLNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDGQLK 80
Cdd:PRK10619 1 MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160
Cdd:PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVF 240
Cdd:PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
|
250
....*....|....*..
gi 757799860 241 GNPQSPRLQQFLKGSLK 257
Cdd:PRK10619 241 GNPQSPRLQQFLKGSLK 257
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
1-257 |
1.07e-169 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 468.51 E-value: 1.07e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSEN---KLNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDG 77
Cdd:COG4598 1 MTDTappALEVRDLHKSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIRLKPDRDG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQ 157
Cdd:COG4598 81 ELVPADRRQLQRIRTRLGMVFQSFNLWSHMTVLENVIEAPVHVLGRPKAEAIERAEALLAKVGLADKRD-AYPAHLSGGQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPE 237
Cdd:COG4598 160 QQRAAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAEEGRTMLVVTHEMGFARDVSSHVVFLHQGRIEEQGPPA 239
|
250 260
....*....|....*....|
gi 757799860 238 QVFGNPQSPRLQQFLKGSLK 257
Cdd:COG4598 240 EVFGNPKSERLRQFLSSSLK 259
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
6-253 |
1.79e-144 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 403.99 E-value: 1.79e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgqlkvADKN 85
Cdd:COG1126 2 IEIENLHKSFGDLEVLKGISLDVEKGEVvviigpsgsgKSTLLRCINLLEEPDSGTITVDGEDLT-----------DSKK 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIAR 165
Cdd:COG1126 71 DINKLRRKVGMVFQQFNLFPHLTVLENVTLAPIKVKKMSKAEAEERAMELLERVGLADKAD-AYPAQLSGGQQQRVAIAR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQS 245
Cdd:COG1126 150 ALAMEPKVMLFDEPTSALDPELVGEVLDVMRDLAKEGMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEFFENPQH 229
|
....*...
gi 757799860 246 PRLQQFLK 253
Cdd:COG1126 230 ERTRAFLS 237
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
6-230 |
1.17e-119 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 340.28 E-value: 1.17e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgqlkvADKN 85
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLT-----------DDKK 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIAR 165
Cdd:cd03262 70 NINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKAD-AYPAQLSGGQQQRVAIAR 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 757799860 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKI 230
Cdd:cd03262 149 ALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
13-253 |
1.14e-102 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 298.16 E-value: 1.14e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 13 KHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdKDGQLKVadknqlRLLRT 92
Cdd:PRK09493 9 KHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV-----NDPKVDE------RLIRQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 93 RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAqGKYPVHLSGGQQQRVSIARALAMEPE 172
Cdd:PRK09493 78 EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERA-HHYPSELSGGQQQRVAIARALAVKPK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 173 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFL 252
Cdd:PRK09493 157 LMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQEFL 236
|
.
gi 757799860 253 K 253
Cdd:PRK09493 237 Q 237
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
8-256 |
3.50e-91 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 269.31 E-value: 3.50e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 8 VIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDGQlkvadKNQL 87
Cdd:PRK11264 6 VKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ-----KGLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 88 RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERaQGKYPVHLSGGQQQRVSIARAL 167
Cdd:PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-ETSYPRRLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSPR 247
Cdd:PRK11264 160 AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPR 239
|
....*....
gi 757799860 248 LQQFLKGSL 256
Cdd:PRK11264 240 TRQFLEKFL 248
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
8-253 |
2.27e-89 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 264.57 E-value: 2.27e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 8 VIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDkdgqlkvADKNQL 87
Cdd:COG4161 5 LKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFDFSQK-------PSEKAI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 88 RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARAL 167
Cdd:COG4161 78 RLLRQKVGMVFQQYNLWPHLTVMENLIEAPCKVLGLSKEQAREKAMKLLARLRLTDKAD-RFPLHLSGGQQQRVAIARAL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEqVFGNPQSPR 247
Cdd:COG4161 157 MMEPQVLLFDEPTAALDPEITAQVVEIIRELSQTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGDAS-HFTQPQTEA 235
|
....*.
gi 757799860 248 LQQFLK 253
Cdd:COG4161 236 FAHYLS 241
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
11-253 |
2.32e-87 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 259.56 E-value: 2.32e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 11 LHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDkdgqlkvADKNQLRLL 90
Cdd:PRK11124 8 INCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKT-------PSDKAIREL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 91 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAME 170
Cdd:PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-RFPLHLSGGQQQRVAIARALMME 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 171 PEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDpEQVFGNPQSPRLQQ 250
Cdd:PRK11124 160 PQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD-ASCFTQPQTEAFKN 238
|
...
gi 757799860 251 FLK 253
Cdd:PRK11124 239 YLS 241
|
|
| ectoine_ehuA |
TIGR03005 |
ectoine/hydroxyectoine ABC transporter, ATP-binding protein; Members of this family are the ... |
10-253 |
2.22e-82 |
|
ectoine/hydroxyectoine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Pssm-ID: 132050 [Multi-domain] Cd Length: 252 Bit Score: 247.05 E-value: 2.22e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 10 DLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDGQLKVADKNQLRL 89
Cdd:TIGR03005 5 DVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 90 LRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAM 169
Cdd:TIGR03005 85 MRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-HMPAQLSGGQQQRVAIARALAM 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 170 EPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGK-TMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSPRL 248
Cdd:TIGR03005 164 RPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDlTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKEERT 243
|
....*
gi 757799860 249 QQFLK 253
Cdd:TIGR03005 244 REFLS 248
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
8-253 |
1.37e-81 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 248.07 E-value: 1.37e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 8 VIDLHKHY----GEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgQLkvaD 83
Cdd:COG1135 4 LENLSKTFptkgGPVTALDDVSLTIEKGEIfgiigysgagKSTLIRCINLLERPTSGSVLVDGVDLT-------AL---S 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVmEAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSI 163
Cdd:COG1135 74 ERELRAARRKIGMIFQHFNLLSSRTVAENV-ALPLEIAGVPKAEIRKRVAELLELVGLSDKAD-AYPSQLSGGQKQRVGI 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 164 ARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGN 242
Cdd:COG1135 152 ARALANNPKVLLCDEATSALDPETTRSILDLLKDINRElGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVFAN 231
|
250
....*....|.
gi 757799860 243 PQSPRLQQFLK 253
Cdd:COG1135 232 PQSELTRRFLP 242
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
10-244 |
6.37e-76 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 230.16 E-value: 6.37e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 10 DLHKHYGEH----EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKdgqlkvadkn 85
Cdd:cd03258 6 NVSKVFGDTggkvTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGK---------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMeAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIAR 165
Cdd:cd03258 76 ELRKARRRIGMIFQHFNLLSSRTVFENVA-LPLEIAGVPKAEIEERVLELLELVGLEDKAD-AYPAQLSGGQKQRVGIAR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQ 244
Cdd:cd03258 154 ALANNPKVLLCDEATSALDPETTQSILALLRDINRElGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANPQ 233
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-252 |
5.51e-72 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 220.24 E-value: 5.51e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSENKLNVIDLHKHYGEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgqlk 80
Cdd:COG1127 1 MSEPMIEVRNLTKSFGDRVVLDGVSLDVPRGEIlaiiggsgsgKSVLLKLIIGLLRPDSGEILVDGQDIT---------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDErAQGKYPVHLSGGQQQR 160
Cdd:COG1127 71 GLSEKELYELRRRIGMLFQGGALFDSLTVFENVAFPLREHTDLSEAEIRELVLEKLELVGLPG-AADKMPSELSGGMRKR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQV 239
Cdd:COG1127 150 VALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDElGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEEL 229
|
250
....*....|...
gi 757799860 240 FgNPQSPRLQQFL 252
Cdd:COG1127 230 L-ASDDPWVRQFL 241
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
6-233 |
9.66e-68 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 208.74 E-value: 9.66e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYG----EHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgQLKV 81
Cdd:COG1136 5 LELRNLTKSYGtgegEVTALRGVSLSIEAGEFvaivgpsgsgKSTLLNILGGLDRPTSGEVLIDGQDIS-------SLSE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 82 ADKNQLRllRTRLTMVFQHFNLWSHMTVLENVMeAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRV 161
Cdd:COG1136 78 RELARLR--RRHIGFVFQFFNLLPELTALENVA-LPLLLAGVSRKERRERARELLERVGLGDRLD-HRPSQLSGGQQQRV 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 757799860 162 SIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVStHVIFLHQGKIEEE 233
Cdd:COG1136 154 AIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRElGTTIVMVTHDPELAARAD-RVIRLRDGRIVSD 225
|
|
| 3a0107s01c2 |
TIGR00972 |
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein ... |
5-254 |
7.52e-67 |
|
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. [Transport and binding proteins, Anions]
Pssm-ID: 273372 [Multi-domain] Cd Length: 247 Bit Score: 207.53 E-value: 7.52e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 5 KLNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PS---AGSIVVSGQNIglvrdkdgql 79
Cdd:TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDlvPGvriEGKVLFDGQDI---------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 80 kVADKNQLRLLRTRLTMVFQHFNLWShMTVLENVMEAPiQVLGL-SKQEARERAVKYLAKVGI-DE---RAQgKYPVHLS 154
Cdd:TIGR00972 71 -YDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGP-RLHGIkDKKELDEIVEESLKKAALwDEvkdRLH-DSALGLS 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEgKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEG 234
Cdd:TIGR00972 147 GGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQQAARISDRTAFFYDGELVEYG 225
|
250 260
....*....|....*....|
gi 757799860 235 DPEQVFGNPQSPRLQQFLKG 254
Cdd:TIGR00972 226 PTEQIFTNPKEKRTEDYISG 245
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
6-246 |
1.63e-66 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 214.38 E-value: 1.63e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHY-----GEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDgqlk 80
Cdd:COG1123 261 LEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETlglvgesgsgKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRS---- 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 81 vadknqLRLLRTRLTMVFQH----FNlwSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGG 156
Cdd:COG1123 337 ------LRELRRRVQMVFQDpyssLN--PRMTVGDIIAEPLRLHGLLSRAERRERVAELLERVGLPPDLADRYPHELSGG 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGD 235
Cdd:COG1123 409 QRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRElGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGP 488
|
250
....*....|.
gi 757799860 236 PEQVFGNPQSP 246
Cdd:COG1123 489 TEEVFANPQHP 499
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
6-229 |
2.65e-65 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 200.88 E-value: 2.65e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDkdgqlkvadkn 85
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLED----------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEApiqvlglskqeareravkylakvgideraqgkypvhLSGGQQQRVSIAR 165
Cdd:cd03229 70 ELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------LSGGQQQRVALAR 113
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 757799860 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGK 229
Cdd:cd03229 114 ALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQlGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
6-244 |
6.44e-65 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 201.79 E-value: 6.44e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHY-GEHEVLKGVSLQ-----------AN-AGdvisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIglv 72
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSiekgefvaiigPNgSG------------KSTLLRLLNGLLKPTSGEVLVDGKDI--- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 73 rdkdgqlkvaDKNQLRLLRTRLTMVFQH-----FNlwshMTVLENVMEAPIQvLGLSKQEARERAVKYLAKVGIDERAQg 147
Cdd:COG1122 66 ----------TKKNLRELRRKVGLVFQNpddqlFA----PTVEEDVAFGPEN-LGLPREEIRERVEEALELVGLEHLAD- 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 148 KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQ 227
Cdd:COG1122 130 RPPHELSGGQKQRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDD 209
|
250
....*....|....*..
gi 757799860 228 GKIEEEGDPEQVFGNPQ 244
Cdd:COG1122 210 GRIVADGTPREVFSDYE 226
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
10-230 |
9.76e-65 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 200.79 E-value: 9.76e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 10 DLHKHYG----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqLKVADKN 85
Cdd:cd03255 5 NLSKTYGgggeKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDI---------SKLSEKE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMeAPIQVLGLSKQEARERAVKYLAKVGIDERAqGKYPVHLSGGQQQRVSIAR 165
Cdd:cd03255 76 LAAFRRRHIGFVFQSFNLLPDLTALENVE-LPLLLAGVPKKERRERAEELLERVGLGDRL-NHYPSELSGGQQQRVAIAR 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 757799860 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHvSTHVIFLHQGKI 230
Cdd:cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEaGTTIVVVTHDPELAEY-ADRIIELRDGKI 218
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
8-251 |
2.69e-64 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 200.42 E-value: 2.69e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 8 VIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDgqlkvadknqL 87
Cdd:cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAE----------L 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 88 RLLRTRLTMVFQHFNLWSHMTVLENVMeAPI-QVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARA 166
Cdd:cd03261 73 YRLRRRMGMLFQSGALFDSLTVFENVA-FPLrEHTRLSEEEIREIVLEKLEAVGLRGAED-LYPAELSGGMKKRVALARA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 167 LAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFgNPQS 245
Cdd:cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKElGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR-ASDD 229
|
....*.
gi 757799860 246 PRLQQF 251
Cdd:cd03261 230 PLVRQF 235
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-246 |
2.27e-62 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 199.17 E-value: 2.27e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSENKLNVIDLHKHYGEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNI-GLVRDKdgql 79
Cdd:COG3842 1 MAMPALELENVSKRYGDVTALDDVSLSIEPGEFvallgpsgcgKTTLLRMIAGFETPDSGRILLDGRDVtGLPPEK---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 80 kvadknqlrllRtRLTMVFQHFNLWSHMTVLENVmEAPIQVLGLSKQEARERAVKYLAKVGIDERAqGKYPVHLSGGQQQ 159
Cdd:COG3842 77 -----------R-NVGMVFQDYALFPHLTVAENV-AFGLRMRGVPKAEIRARVAELLELVGLEGLA-DRYPHQLSGGQQQ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 160 RVSIARALAMEPEVLLFDEPTSALDP----ELVGEVLRIMQQLaeeGKTMVVVTH--EMGFArhVSTHVIFLHQGKIEEE 233
Cdd:COG3842 143 RVALARALAPEPRVLLLDEPLSALDAklreEMREELRRLQREL---GITFIYVTHdqEEALA--LADRIAVMNDGRIEQV 217
|
250
....*....|...
gi 757799860 234 GDPEQVFGNPQSP 246
Cdd:COG3842 218 GTPEEIYERPATR 230
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
10-256 |
5.63e-62 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 198.10 E-value: 5.63e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 10 DLHKHY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgQLkvaDKN 85
Cdd:PRK11153 6 NISKVFpqggRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLT-------AL---SEK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVmeA-PIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIA 164
Cdd:PRK11153 76 ELRKARRQIGMIFQHFNLLSSRTVFDNV--AlPLELAGTPKAEIKARVTELLELVGLSDKAD-RYPAQLSGGQKQRVAIA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNP 243
Cdd:PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRElGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHP 232
|
250
....*....|...
gi 757799860 244 QSPRLQQFLKGSL 256
Cdd:PRK11153 233 KHPLTREFIQSTL 245
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
10-234 |
5.74e-61 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 191.42 E-value: 5.74e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 10 DLHKHY-GEHEVLKGVSLQAN------------AGdvisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKd 76
Cdd:COG2884 6 NVSKRYpGGREALSDVSLEIEkgefvfltgpsgAG------------KSTLLKLLYGEERPTSGQVLVNGQDLSRLKRR- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 77 gqlkvadknQLRLLRTRLTMVFQHFNLWSHMTVLENVMeAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGG 156
Cdd:COG2884 73 ---------EIPYLRRRIGVVFQDFRLLPDRTVYENVA-LPLRVTGKSRKEIRRRVREVLDLVGLSDKAK-ALPHELSGG 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757799860 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEG 234
Cdd:COG2884 142 EQQRVAIARALVNRPELLLADEPTGNLDPETSWEIMELLEEINRRGTTVLIATHDLELVDRMPKRVLELEDGRLVRDE 219
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
6-239 |
1.98e-58 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 186.03 E-value: 1.98e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHY-GEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKdgqlkvadk 84
Cdd:COG3638 3 LELRNLSKRYpGGTPALDDVSLEIERGEFvaligpsgagKSTLLRCLNGLVEPTSGEILVDGQDVTALRGR--------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 85 nQLRLLRTRLTMVFQHFNLWSHMTVLENVM------EAPIQ-VLGLSKQEARERAVKYLAKVGIDERAQGKypVH-LSGG 156
Cdd:COG3638 74 -ALRRLRRRIGMIFQQFNLVPRLSVLTNVLagrlgrTSTWRsLLGLFPPEDRERALEALERVGLADKAYQR--ADqLSGG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGD 235
Cdd:COG3638 151 QQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREdGITVVVNLHQVDLARRYADRIIGLRDGRVVFDGP 230
|
....
gi 757799860 236 PEQV 239
Cdd:COG3638 231 PAEL 234
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
6-256 |
2.81e-57 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 183.08 E-value: 2.81e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGE----HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDgqlkv 81
Cdd:COG1124 2 LEVRNLSVSYGQggrrVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKA----- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 82 adknqlrlLRTRLTMVFQH----FNlwSHMTVLENVMEaPIQVLGLskQEARERAVKYLAKVGIDERAQGKYPVHLSGGQ 157
Cdd:COG1124 77 --------FRRRVQMVFQDpyasLH--PRHTVDRILAE-PLRIHGL--PDREERIAELLEQVGLPPSFLDRYPHQLSGGQ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDP 236
Cdd:COG1124 144 RQRVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLrEERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTV 223
|
250 260
....*....|....*....|
gi 757799860 237 EQVFGNPQSPRLQQFLKGSL 256
Cdd:COG1124 224 ADLLAGPKHPYTRELLAASL 243
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
6-239 |
3.46e-57 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 182.50 E-value: 3.46e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDgqlkvadk 84
Cdd:TIGR02315 2 LEVENLSKVYPNgKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKK-------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 85 nqLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI-------QVLGLSKQEARERAVKYLAKVGIDERAQGKYPvHLSGGQ 157
Cdd:TIGR02315 74 --LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLgykptwrSLLGRFSEEDKERALSALERVGLADKAYQRAD-QLSGGQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDP 236
Cdd:TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEdGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAP 230
|
...
gi 757799860 237 EQV 239
Cdd:TIGR02315 231 SEL 233
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
6-239 |
7.84e-57 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 181.42 E-value: 7.84e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvadKN 85
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIfgllgpngagKTTTIRMLLGLLRPTSGEVRVLGEDV--------------AR 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRTRLTMVFQHFNLWSHMTVLENV-MEAPIQvlGLSKQEARERAVKYLAKVGIDERAqGKYPVHLSGGQQQRVSIA 164
Cdd:COG1131 67 DPAEVRRRIGYVPQEPALYPDLTVRENLrFFARLY--GLPRKEARERIDELLELFGLTDAA-DRKVGTLSGGMKQRLGLA 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 757799860 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQV 239
Cdd:COG1131 144 LALLHDPELLILDEPTSGLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDEL 218
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
6-239 |
1.85e-56 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 180.46 E-value: 1.85e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDgqlkvadk 84
Cdd:cd03256 1 IEVENLSKTYPNgKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKA-------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 85 nqLRLLRTRLTMVFQHFNLWSHMTVLENVMEA------PIQVL-GLSKQEARERAVKYLAKVGIDE----RAQgkypvHL 153
Cdd:cd03256 73 --LRQLRRQIGMIFQQFNLIERLSVLENVLSGrlgrrsTWRSLfGLFPKEEKQRALAALERVGLLDkayqRAD-----QL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLA-EEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEE 232
Cdd:cd03256 146 SGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINrEEGITVIVSLHQVDLAREYADRIVGLKDGRIVF 225
|
....*..
gi 757799860 233 EGDPEQV 239
Cdd:cd03256 226 DGPPAEL 232
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
6-234 |
5.07e-56 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 179.24 E-value: 5.07e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKdgqlkv 81
Cdd:cd03257 2 LEVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRR------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 82 adknQLRLLRTRLTMVFQH----FNlwSHMTVLENVMEAPIQVLGLSKQEARERAVKYLA-KVGIDERAQGKYPVHLSGG 156
Cdd:cd03257 76 ----LRKIRRKEIQMVFQDpmssLN--PRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLvGVGLPEEVLNRYPHELSGG 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEG 234
Cdd:cd03257 150 QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEElGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
44-254 |
8.79e-56 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 179.76 E-value: 8.79e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVmEAPIQVLGL 123
Cdd:cd03294 63 KSTLLRCINRLIEPTSGKVLIDGQDI---------AAMSRKELRELRRKKISMVFQSFALLPHRTVLENV-AFGLEVQGV 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 124 SKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP----ELVGEVLRIMqqlA 199
Cdd:cd03294 133 PRAEREERAAEALELVGLEGWEH-KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPlirrEMQDELLRLQ---A 208
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 757799860 200 EEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKG 254
Cdd:cd03294 209 ELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFFRG 263
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-254 |
1.40e-55 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 179.08 E-value: 1.40e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 2 SENKLNVIDLHKHYGEHEVLKGVSLQ--ANA----------GdvisiigssgsgKSTFLRCINFL--EKPSA---GSIVV 64
Cdd:COG1117 8 LEPKIEVRNLNVYYGDKQALKDINLDipENKvtaligpsgcG------------KSTLLRCLNRMndLIPGArveGEILL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 65 SGQNIglvRDKDgqlkvADKNQLRllrTRLTMVFQHFNLWShMTVLENVmeapiqVLGL------SKQEARERAVKYLAK 138
Cdd:COG1117 76 DGEDI---YDPD-----VDVVELR---RRVGMVFQKPNPFP-KSIYDNV------AYGLrlhgikSKSELDEIVEESLRK 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 139 VGI-DE---RAQgKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPelvGEVLRI---MQQLAEEgKTMVVVTHE 211
Cdd:COG1117 138 AALwDEvkdRLK-KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDP---ISTAKIeelILELKKD-YTIVIVTHN 212
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 757799860 212 MGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKG 254
Cdd:COG1117 213 MQQAARVSDYTAFFYLGELVEFGPTEQIFTNPKDKRTEDYITG 255
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
6-234 |
2.21e-55 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 176.94 E-value: 2.21e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvadkN 85
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV---------------T 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVmeA-PIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIA 164
Cdd:cd03259 66 GVPPERRNIGMVFQDYALFPHLTVAENI--AfGLKLRGVPKAEIRARVRELLELVGLEGLLN-RYPHELSGGQQQRVALA 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757799860 165 RALAMEPEVLLFDEPTSALDP----ELVGEVLRImqqLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEG 234
Cdd:cd03259 143 RALAREPSLLLLDEPLSALDAklreELREELKEL---QRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
44-243 |
2.73e-55 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 182.23 E-value: 2.73e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgqlkVADKNQLRLLR-TRLTMVFQHFNLWSHMTVLENVmEAPIQVLG 122
Cdd:COG4175 66 KSTLVRCLNRLIEPTAGEVLIDGEDIT----------KLSKKELRELRrKKMSMVFQHFALLPHRTVLENV-AFGLEIQG 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 123 LSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP----ELVGEVLRIMQQL 198
Cdd:COG4175 135 VPKAERRERAREALELVGLAGWED-SYPDELSGGMQQRVGLARALATDPDILLMDEAFSALDPlirrEMQDELLELQAKL 213
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 757799860 199 aeeGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNP 243
Cdd:COG4175 214 ---KKTIVFITHDLDEALRLGDRIAIMKDGRIVQIGTPEEILTNP 255
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
6-239 |
4.44e-55 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 176.60 E-value: 4.44e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSAGSIVVSGQNIglvrdkdgqlk 80
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDlipgaPDEGEVLLDGKDI----------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 81 VADKNQLRLLRTRLTMVFQHFNLWsHMTVLENVmeapiqVLGL------SKQEARERAVKYLAKVGIDERAQGK-YPVHL 153
Cdd:cd03260 70 YDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNV------AYGLrlhgikLKEELDERVEEALRKAALWDEVKDRlHALGL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEgKTMVVVTHEMGFARHVSTHVIFLHQGKIEEE 233
Cdd:cd03260 143 SGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221
|
....*.
gi 757799860 234 GDPEQV 239
Cdd:cd03260 222 GPTEQI 227
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
1-252 |
1.52e-54 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 179.19 E-value: 1.52e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSenkLNVIDLHKHYGEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGqniglvRDKDGQLK 80
Cdd:COG1118 1 MS---IEVRNISKRFGSFTLLDDVSLEIASGELvallgpsgsgKTTLLRIIAGLETPDSGRIVLNG------RDLFTNLP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 81 VADKnqlrllrtRLTMVFQHFNLWSHMTVLENVMEAPiQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQR 160
Cdd:COG1118 72 PRER--------RVGFVFQHYALFPHMTVAENIAFGL-RVRPPSKAEIRARVEELLELVQLEGLAD-RYPSQLSGGQRQR 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 161 VSIARALAMEPEVLLFDEPTSALD----PELVGEVLRImqqLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDP 236
Cdd:COG1118 142 VALARALAVEPEVLLLDEPFGALDakvrKELRRWLRRL---HDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTP 218
|
250
....*....|....*.
gi 757799860 237 EQVFGNPQSPRLQQFL 252
Cdd:COG1118 219 DEVYDRPATPFVARFL 234
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-210 |
1.16e-52 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 171.43 E-value: 1.16e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSENKLNVIDLHKHY----GEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkd 76
Cdd:COG1116 3 AAAPALELRGVSKRFptggGGVTALDDVSLTVAAGEFvalvgpsgcgKSTLLRLIAGLEKPTSGEVLVDGKPV------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 77 gqlkvadknqlRLLRTRLTMVFQHFNL--WshMTVLENVMeAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLS 154
Cdd:COG1116 76 -----------TGPGPDRGVVFQEPALlpW--LTVLDNVA-LGLELRGVPKAERRERARELLELVGLAGFED-AYPHQLS 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDP----ELVGEVLRImqqLAEEGKTMVVVTH 210
Cdd:COG1116 141 GGMRQRVAIARALANDPEVLLMDEPFGALDAltreRLQDELLRL---WQETGKTVLFVTH 197
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
6-244 |
2.93e-52 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 169.54 E-value: 2.93e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgQLKVADKN 85
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT-------GLPPHEIA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRTrltmvFQHFNLWSHMTVLENVMEAPIQVLGLS---------KQEARERAVKYLAKVGIDERAqgKYPVH-LSG 155
Cdd:cd03219 74 RLGIGRT-----FQIPRLFPELTVLENVMVAAQARTGSGlllararreEREARERAEELLERVGLADLA--DRPAGeLSY 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGD 235
Cdd:cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226
|
....*....
gi 757799860 236 PEQVFGNPQ 244
Cdd:cd03219 227 PDEVRNNPR 235
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
17-253 |
5.71e-52 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 170.32 E-value: 5.71e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlKVADKNQLRLLRTRLTM 96
Cdd:TIGR04521 17 EKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDI----------TAKKKKKLKDLRKKVGL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 97 VFQH-----FNLwshmTVLENVMEAPIQvLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEP 171
Cdd:TIGR04521 87 VFQFpehqlFEE----TVYKDIAFGPKN-LGLSEEEAEERVKEALELVGLDEEYLERSPFELSGGQMRRVAIAGVLAMEP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 172 EVLLFDEPTSALDPELVGEVLRIMQQLA-EEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGN-------- 242
Cdd:TIGR04521 162 EVLILDEPTAGLDPKGRKEILDLFKRLHkEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVFSDvdelekig 241
|
250
....*....|....
gi 757799860 243 ---PQSPRLQQFLK 253
Cdd:TIGR04521 242 ldvPEITELARKLK 255
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
10-229 |
2.71e-51 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 166.49 E-value: 2.71e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 10 DLHKHYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvaDKNQL 87
Cdd:cd03225 4 NLSFSYPDGArpALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDL-------------TKLSL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 88 RLLRTRLTMVFQH-----FNLwshmTVLENVMEAPIQvLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVS 162
Cdd:cd03225 71 KELRRKVGLVFQNpddqfFGP----TVEEEVAFGLEN-LGLPEEEIEERVEEALELVGLEGLRD-RSPFTLSGGQKQRVA 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 757799860 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGK 229
Cdd:cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
6-245 |
2.04e-50 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 172.40 E-value: 2.04e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHY--GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA---GSIVVSGQNIGLVRDkdgqlk 80
Cdd:COG1123 5 LEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGrisGEVLLDGRDLLELSE------ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 81 vadknqlRLLRTRLTMVFQH----FNLwshMTVLENVMEApIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGG 156
Cdd:COG1123 79 -------ALRGRRIGMVFQDpmtqLNP---VTVGDQIAEA-LENLGLSRAEARARVLELLEAVGLERRLD-RYPHQLSGG 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGD 235
Cdd:COG1123 147 QRQRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELqRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGP 226
|
250
....*....|
gi 757799860 236 PEQVFGNPQS 245
Cdd:COG1123 227 PEEILAAPQA 236
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-245 |
2.19e-50 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 168.33 E-value: 2.19e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSEnkLNVIDLHKHYGEHEVLKGVSLQAN------------AGdvisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQN 68
Cdd:COG3839 1 MAS--LELENVSKSYGGVEALKDIDLDIEdgeflvllgpsgCG------------KSTLLRMIAGLEDPTSGEILIGGRD 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 69 IGlvrdkdgQLKVADKNqlrllrtrLTMVFQHFNLWSHMTVLENvMEAPIQVLGLSKQEARERaVKYLAK-VGIDERAQg 147
Cdd:COG3839 67 VT-------DLPPKDRN--------IAMVFQSYALYPHMTVYEN-IAFPLKLRKVPKAEIDRR-VREAAElLGLEDLLD- 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 148 KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP----ELVGEVLRIMQQLaeeGKTMVVVTHE----MGFArhvs 219
Cdd:COG3839 129 RKPKQLSGGQRQRVALGRALVREPKVFLLDEPLSNLDAklrvEMRAEIKRLHRRL---GTTTIYVTHDqveaMTLA---- 201
|
250 260
....*....|....*....|....*.
gi 757799860 220 THVIFLHQGKIEEEGDPEQVFGNPQS 245
Cdd:COG3839 202 DRIAVMNDGRIQQVGTPEELYDRPAN 227
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
6-246 |
5.60e-50 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 166.38 E-value: 5.60e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHY----GEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCI-NFLEKP--SAGSIVVSGQNIglvrdkdgq 78
Cdd:COG0444 2 LEVRNLKVYFptrrGVVKAVDGVSFDVRRGETlglvgesgsgKSTLARAIlGLLPPPgiTSGEILFDGEDL--------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 79 LKvADKNQLRLLRTR-LTMVFQH----FNlwSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ--GKYPV 151
Cdd:COG0444 73 LK-LSEKELRKIRGReIQMIFQDpmtsLN--PVMTVGDQIAEPLRIHGGLSKAEARERAIELLERVGLPDPERrlDRYPH 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKI 230
Cdd:COG0444 150 ELSGGMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRElGLAILFITHDLGVVAEIADRVAVMYAGRI 229
|
250
....*....|....*.
gi 757799860 231 EEEGDPEQVFGNPQSP 246
Cdd:COG0444 230 VEEGPVEELFENPRHP 245
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
6-244 |
3.37e-49 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 162.52 E-value: 3.37e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQAN------------AGdvisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIGlvr 73
Cdd:COG0411 5 LEVRGLTKRFGGLVAVDDVSLEVErgeivgligpngAG------------KTTLFNLITGFYRPTSGRILFDGRDIT--- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 74 dkdgQLKVADKNQLRLLRTrltmvFQHFNLWSHMTVLENVMEAPIQVLGLS--------------KQEARERAVKYLAKV 139
Cdd:COG0411 70 ----GLPPHRIARLGIART-----FQNPRLFPELTVLENVLVAAHARLGRGllaallrlprarreEREARERAEELLERV 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 140 GIDERAqGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHV 218
Cdd:COG0411 141 GLADRA-DEPAGNLSYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLrDERGITILLIEHDMDLVMGL 219
|
250 260
....*....|....*....|....*.
gi 757799860 219 STHVIFLHQGKIEEEGDPEQVFGNPQ 244
Cdd:COG0411 220 ADRIVVLDFGRVIAEGTPAEVRADPR 245
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
8-252 |
3.65e-49 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 161.74 E-value: 3.65e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 8 VIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgQLKVADKNql 87
Cdd:cd03296 5 VRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAT-------DVPVQERN-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 88 rllrtrLTMVFQHFNLWSHMTVLENV---MEAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIA 164
Cdd:cd03296 76 ------VGFVFQHYALFRHMTVFDNVafgLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-RYPAQLSGGQRQRVALA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNP 243
Cdd:cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDElHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
....*....
gi 757799860 244 QSPRLQQFL 252
Cdd:cd03296 229 ASPFVYSFL 237
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
10-233 |
1.50e-48 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 159.56 E-value: 1.50e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 10 DLHKHYG----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQniglvrdkdgqlkvadkn 85
Cdd:cd03293 5 NVSKTYGggggAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGE------------------ 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMeAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIAR 165
Cdd:cd03293 67 PVTGPGPDRGYVFQQDALLPWLTVLDNVA-LGLELQGVPKAEARERAEELLELVGLSGFEN-AYPHQLSGGMRQRVALAR 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757799860 166 ALAMEPEVLLFDEPTSALDP----ELVGEVLRImqqLAEEGKTMVVVTHEMGFARHVSTHVIFLHQ--GKIEEE 233
Cdd:cd03293 145 ALAVDPDVLLLDEPFSALDAltreQLQEELLDI---WRETGKTVLLVTHDIDEAVFLADRVVVLSArpGRIVAE 215
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
44-253 |
1.61e-48 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 160.16 E-value: 1.61e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvADKNQLRLlRTRLTMVFQHFNLWSHMTVLENVMEAPiQVLGL 123
Cdd:cd03295 40 KTTTMKMINRLIEPTSGEIFIDGEDI------------REQDPVEL-RRKIGYVIQQIGLFPHMTVEENIALVP-KLLKW 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 124 SKQEARERAVKYLAKVGIDERA-QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP----ELVGEVLRIMQQL 198
Cdd:cd03295 106 PKEKIRERADELLALVGLDPAEfADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPitrdQLQEEFKRLQQEL 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 757799860 199 aeeGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLK 253
Cdd:cd03295 186 ---GKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAEFVG 237
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
6-239 |
3.74e-48 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 159.25 E-value: 3.74e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvadKN 85
Cdd:COG4555 2 IEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDV--------------RK 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRTRLTMVFQHFNLWSHMTVLENV-MEAPIQvlGLSKQEARERAVKYLAKVGIDERAQGKYpVHLSGGQQQRVSIA 164
Cdd:COG4555 68 EPREARRQIGVLPDERGLYDRLTVRENIrYFAELY--GLFDEELKKRIEELIELLGLEEFLDRRV-GELSTGMKKKVALA 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 757799860 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQV 239
Cdd:COG4555 145 RALVHDPKVLLLDEPTNGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDEL 219
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
44-252 |
1.07e-47 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 160.26 E-value: 1.07e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIglvRDKDgqlkvadknqLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPiQVLGL 123
Cdd:COG1125 41 KTTTLRMINRLIEPTSGRILIDGEDI---RDLD----------PVELRRRIGYVIQQIGLFPHMTVAENIATVP-RLLGW 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 124 SKQEARERAVKYLAKVGIDERAQG-KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP----ELVGEVLRIMQQL 198
Cdd:COG1125 107 DKERIRARVDELLELVGLDPEEYRdRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPitreQLQDELLRLQREL 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 757799860 199 aeeGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFL 252
Cdd:COG1125 187 ---GKTIVFVTHDIDEALKLGDRIAVMREGRIVQYDTPEEILANPANDFVADFV 237
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
6-240 |
1.27e-47 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 158.28 E-value: 1.27e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDgqlkvadkn 85
Cdd:COG1120 2 LEAENLSVGYGGRPVLDDVSLSLPPGEVtallgpngsgKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRE--------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 qlrlLRTRLTMVFQHFNLWSHMTVLENVM--EAP-IQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVS 162
Cdd:COG1120 73 ----LARRIAYVPQEPPAPFGLTVRELVAlgRYPhLGLFGRPSAEDREAVEEALERTGLEHLAD-RPVDELSGGERQRVL 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLA-EEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVF 240
Cdd:COG1120 148 IARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLArERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVL 226
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
13-245 |
1.92e-46 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 154.70 E-value: 1.92e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 13 KHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvadkNQLRLLRT 92
Cdd:cd03300 8 KFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI---------------TNLPPHKR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 93 RLTMVFQHFNLWSHMTVLENVmEAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAMEPE 172
Cdd:cd03300 73 PVNTVFQNYALFPHLTVFENI-AFGLRLKKLPKAEIKERVAEALDLVQLEGYAN-RKPSQLSGGQQQRVAIARALVNEPK 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757799860 173 VLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQS 245
Cdd:cd03300 151 VLLLDEPLGALDLKLRKDMQLELKRLQKElGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPAN 224
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
44-246 |
3.11e-46 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 156.82 E-value: 3.11e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgqlkVADKNQLRLLRTRLTMVFQH----FNlwSHMTVLENVMEaPIQ 119
Cdd:COG4608 57 KSTLGRLLLRLEEPTSGEILFDGQDIT----------GLSGRELRPLRRRMQMVFQDpyasLN--PRMTVGDIIAE-PLR 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 120 VLGL-SKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL 198
Cdd:COG4608 124 IHGLaSKAERRERVAELLELVGLRPEHADRYPHEFSGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDL 203
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 757799860 199 AEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSP 246
Cdd:COG4608 204 QDElGLTYLFISHDLSVVRHISDRVAVMYLGKIVEIAPRDELYARPLHP 252
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-233 |
7.85e-46 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 152.97 E-value: 7.85e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSENKLNVIDLHKHY--GEHEV--LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkd 76
Cdd:COG4181 4 SSAPIIELRGLTKTVgtGAGELtiLKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLF------ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 77 gQLkvaDKNQL-RLLRTRLTMVFQHFNLWSHMTVLENVMeAPIQVLGLSkqEARERAVKYLAKVGIDERAqGKYPVHLSG 155
Cdd:COG4181 78 -AL---DEDARaRLRARHVGFVFQSFQLLPTLTALENVM-LPLELAGRR--DARARARALLERVGLGHRL-DHYPAQLSG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPElVGEvlRIMQQL----AEEGKTMVVVTHEMGFARHvSTHVIFLHQGKIE 231
Cdd:COG4181 150 GEQQRVALARAFATEPAILFADEPTGNLDAA-TGE--QIIDLLfelnRERGTTLVLVTHDPALAAR-CDRVLRLRAGRLV 225
|
..
gi 757799860 232 EE 233
Cdd:COG4181 226 ED 227
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
11-229 |
2.11e-45 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 151.25 E-value: 2.11e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 11 LHKHY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKdgqlkvadknQLRL 89
Cdd:TIGR02673 7 VSKAYpGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGR----------QLPL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 90 LRTRLTMVFQHFNLWSHMTVLENVmEAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAM 169
Cdd:TIGR02673 77 LRRRIGVVFQDFRLLPDRTVYENV-ALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-AFPEQLSGGEQQRVAIARAIVN 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 170 EPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGK 229
Cdd:TIGR02673 155 SPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-240 |
5.72e-45 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 151.40 E-value: 5.72e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSENKLNVIDLHKHYGEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDkdgqlk 80
Cdd:COG1121 2 MMMPAIELENLTVSYGGRPVLEDVSLTIPPGEFvaivgpngagKSTLLKAILGLLPPTSGTVRLFGKPPRRARR------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 81 vadknqlrllrtRLTMVFQHFNL-WS-HMTVLENVM---EAPIQVLGLSKQEARERAVKYLAKVGIDERAqgKYPV-HLS 154
Cdd:COG1121 76 ------------RIGYVPQRAEVdWDfPITVRDVVLmgrYGRRGLFRRPSRADREAVDEALERVGLEDLA--DRPIgELS 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIeEEG 234
Cdd:COG1121 142 GGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRVLLLNRGLV-AHG 220
|
....*.
gi 757799860 235 DPEQVF 240
Cdd:COG1121 221 PPEEVL 226
|
|
| PhnT2 |
TIGR03265 |
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ... |
6-251 |
6.33e-45 |
|
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 154.42 E-value: 6.33e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvadkn 85
Cdd:TIGR03265 5 LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI---------------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 qlrllrTRLT-------MVFQHFNLWSHMTVLENVmEAPIQVLGLSKQEARERAVKYLAKVGIDErAQGKYPVHLSGGQQ 158
Cdd:TIGR03265 69 ------TRLPpqkrdygIVFQSYALFPNLTVADNI-AYGLKNRGMGRAEVAERVAELLDLVGLPG-SERKYPGQLSGGQQ 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 159 QRVSIARALAMEPEVLLFDEPTSALDPE----LVGEVLRIMQQLaeeGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEG 234
Cdd:TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARvrehLRTEIRQLQRRL---GVTTIMVTHDQEEALSMADRIVVMNHGVIEQVG 217
|
250
....*....|....*..
gi 757799860 235 DPEQVFGNPQSPRLQQF 251
Cdd:TIGR03265 218 TPQEIYRHPATPFVADF 234
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
6-230 |
1.22e-44 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 149.20 E-value: 1.22e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvaDKN 85
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPL-------------SAM 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRTRLTMVFQHFNLWsHMTVLENvMEAPIQVLGlsKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIAR 165
Cdd:COG4619 68 PPPEWRRQVAYVPQEPALW-GGTVRDN-LPFPFQLRE--RKFDRERALELLERLGLPPDILDKPVERLSGGERQRLALIR 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 757799860 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHVSTHVIFLHQGKI 230
Cdd:COG4619 144 ALLLQPDVLLLDEPTSALDPENTRRVEELLREYlAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
8-253 |
1.62e-44 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 150.66 E-value: 1.62e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 8 VIDLHKHYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGqniglvrdkdgqLKVADKN 85
Cdd:TIGR04520 3 VENVSFSYPESEkpALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDG------------LDTLDEE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRTRLTMVFQH-FNLWSHMTV-------LENvmeapiqvLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQ 157
Cdd:TIGR04520 71 NLWEIRKKVGMVFQNpDNQFVGATVeddvafgLEN--------LGVPREEMRKRVDEALKLVGMEDFRD-REPHLLSGGQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHvSTHVIFLHQGKIEEEGDP 236
Cdd:TIGR04520 142 KQRVAIAGVLAMRPDIIILDEATSMLDPKGRKEVLETIRKLnKEEGITVISITHDMEEAVL-ADRVIVMNKGKIVAEGTP 220
|
250 260
....*....|....*....|....*...
gi 757799860 237 EQVFGN-----------PQSPRLQQFLK 253
Cdd:TIGR04520 221 REIFSQvellkeigldvPFITELAKALK 248
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
6-230 |
2.56e-43 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 144.85 E-value: 2.56e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvadKN 85
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIygllgpngagKTTLIKIILGLLKPDSGEIKVLGKDI--------------KK 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVmeapiqvlglskqeareravkylakvgideraqgkypvHLSGGQQQRVSIAR 165
Cdd:cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENL--------------------------------------KLSGGMKQRLALAQ 108
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 757799860 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKI 230
Cdd:cd03230 109 ALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
13-252 |
7.59e-43 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 148.69 E-value: 7.59e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 13 KHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDgqlkvadknqlrllrT 92
Cdd:PRK10851 10 KSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD---------------R 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 93 RLTMVFQHFNLWSHMTVLENVmeapiqVLGLSKQEARER---------AVKYLAKVGIDERAQgKYPVHLSGGQQQRVSI 163
Cdd:PRK10851 75 KVGFVFQHYALFRHMTVFDNI------AFGLTVLPRRERpnaaaikakVTQLLEMVQLAHLAD-RYPAQLSGGQKQRVAL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 164 ARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGK-TMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGN 242
Cdd:PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKfTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227
|
250
....*....|
gi 757799860 243 PQSPRLQQFL 252
Cdd:PRK10851 228 PATRFVLEFM 237
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
44-257 |
1.11e-42 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 151.76 E-value: 1.11e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEkPSAGSIVVSGQNI-GLvrdkdgqlkvaDKNQLRLLRTRLTMVFQ----HFNlwSHMTVLENVMEaPI 118
Cdd:COG4172 325 KSTLGLALLRLI-PSEGEIRFDGQDLdGL-----------SRRALRPLRRRMQVVFQdpfgSLS--PRMTVGQIIAE-GL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 119 QVL--GLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQ 196
Cdd:COG4172 390 RVHgpGLSAAERRARVAEALEEVGLDPAARHRYPHEFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLR 469
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757799860 197 QL-AEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLK 257
Cdd:COG4172 470 DLqREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPTEQVFDAPQHPYTRALLAAAPL 531
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
8-212 |
2.09e-42 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 143.52 E-value: 2.09e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 8 VIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqLKVADKNQL 87
Cdd:TIGR03608 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQET---------PPLNSKKAS 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 88 RLLRTRLTMVFQHFNLWSHMTVLENvMEAPIQVLGLSKQEARERAVKYLAKVGIDERaQGKYPVHLSGGQQQRVSIARAL 167
Cdd:TIGR03608 72 KFRREKLGYLFQNFALIENETVEEN-LDLGLKYKKLSKKEKREKKKEALEKVGLNLK-LKQKIYELSGGEQQRVALARAI 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 757799860 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212
Cdd:TIGR03608 150 LKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDP 194
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
6-252 |
2.14e-42 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 147.03 E-value: 2.14e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHY--------GEHEV--LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNiglvrdk 75
Cdd:PRK11308 6 LQAIDLKKHYpvkrglfkPERLVkaLDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQD------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 76 dgqLKVADKNQLRLLRTRLTMVFQ--HFNLWSHMTVlENVMEAPIQV-LGLSKQEARERAVKYLAKVGIDERAQGKYPVH 152
Cdd:PRK11308 79 ---LLKADPEAQKLLRQKIQIVFQnpYGSLNPRKKV-GQILEEPLLInTSLSAAERREKALAMMAKVGLRPEHYDRYPHM 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIE 231
Cdd:PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQElGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234
|
250 260
....*....|....*....|.
gi 757799860 232 EEGDPEQVFGNPQSPRLQQFL 252
Cdd:PRK11308 235 EKGTKEQIFNNPRHPYTQALL 255
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
44-253 |
3.01e-42 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 146.53 E-value: 3.01e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSI----VVSGQNIGLVRDKDGQLKVADKNQLRLlRTRLTMVFQ--HFNLWSHmTVLENVMEAP 117
Cdd:PRK13631 65 KSTLVTHFNGLIKSKYGTIqvgdIYIGDKKNNHELITNPYSKKIKNFKEL-RRRVSMVFQfpEYQLFKD-TIEKDIMFGP 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 118 IqVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQ 197
Cdd:PRK13631 143 V-ALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD 221
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757799860 198 LAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNP--------QSPRLQQFLK 253
Cdd:PRK13631 222 AKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQhiinstsiQVPRVIQVIN 285
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
17-253 |
4.25e-42 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 145.61 E-value: 4.25e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDGQLKVADKNQLRL------- 89
Cdd:PRK13651 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKtrfkkik 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 90 ----LRTRLTMVFQ--HFNLWSHmTVLENVMEAPIQvLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 163
Cdd:PRK13651 99 kikeIRRRVGVVFQfaEYQLFEQ-TIEKDIIFGPVS-MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVAL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 164 ARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVF--- 240
Cdd:PRK13651 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILsdn 256
|
250
....*....|....*...
gi 757799860 241 -----GNPQSPRLQQFLK 253
Cdd:PRK13651 257 kflieNNMEPPKLLNFVN 274
|
|
| proV |
TIGR01186 |
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine ... |
44-254 |
4.37e-42 |
|
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130254 [Multi-domain] Cd Length: 363 Bit Score: 147.31 E-value: 4.37e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIGLVrdkdgqlkvaDKNQLRLLRTR-LTMVFQHFNLWSHMTVLENVMEAPiQVLG 122
Cdd:TIGR01186 32 KSTTVRMLNRLIEPTAGQIFIDGENIMKQ----------SPVELREVRRKkIGMVFQQFALFPHMTILQNTSLGP-ELLG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 123 LSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP----ELVGEVLRIMQQL 198
Cdd:TIGR01186 101 WPEQERKEKALELLKLVGLEEYEH-RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPlirdSMQDELKKLQATL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 757799860 199 aeeGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKG 254
Cdd:TIGR01186 180 ---QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIGK 232
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
9-230 |
2.19e-41 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 141.01 E-value: 2.19e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 9 IDLHKHYGEHEV-LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRdkdgqlkvadKNQL 87
Cdd:cd03292 4 INVTKTYPNGTAaLDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLR----------GRAI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 88 RLLRTRLTMVFQHFNLWSHMTVLENVMeAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARAL 167
Cdd:cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVA-FALEVTGVPPREIRKRVPAALELVGLSHKHR-ALPAELSGGEQQRVAIARAI 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 757799860 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKI 230
Cdd:cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
19-230 |
9.65e-41 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 147.95 E-value: 9.65e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVrdkdgqlkvaDKNQL-RLLRTRLTMV 97
Cdd:PRK10535 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATL----------DADALaQLRREHFGFI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 98 FQHFNLWSHMTVLENVmEAPIQVLGLSKQEARERAVKYLAKVGIDERAqGKYPVHLSGGQQQRVSIARALAMEPEVLLFD 177
Cdd:PRK10535 92 FQRYHLLSHLTAAQNV-EVPAVYAGLERKQRLLRAQELLQRLGLEDRV-EYQPSQLSGGQQQRVSIARALMNGGQVILAD 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 757799860 178 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHvSTHVIFLHQGKI 230
Cdd:PRK10535 170 EPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQ-AERVIEIRDGEI 221
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
44-253 |
2.64e-40 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 138.73 E-value: 2.64e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgQLKVADknqlrllrtR-LTMVFQHFNLWSHMTVLENVmeapiqVLG 122
Cdd:COG3840 38 KSTLLNLIAGFLPPDSGRILWNGQDLT-------ALPPAE---------RpVSMLFQENNLFPHLTVAQNI------GLG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 123 LSK-----QEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQ 197
Cdd:COG3840 96 LRPglkltAEQRAQVEQALERVGLAGLLD-RLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALDPALRQEMLDLVDE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 757799860 198 LAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLK 253
Cdd:COG3840 175 LCRErGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPPPALAAYLG 231
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
4-256 |
4.88e-40 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 138.89 E-value: 4.88e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 4 NKLNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL-----EKPSAGSIVVSGQNIGlvrdkdgq 78
Cdd:PRK14247 2 NKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLielypEARVSGEVYLDGQDIF-------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 79 lkvadKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP-IQVLGLSKQEARERAVKYLAKVGIDERAQGKYPV---HLS 154
Cdd:PRK14247 74 -----KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLkLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDApagKLS 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEgKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEG 234
Cdd:PRK14247 149 GGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
|
250 260
....*....|....*....|..
gi 757799860 235 DPEQVFGNPQSPRLQQFLKGSL 256
Cdd:PRK14247 228 PTREVFTNPRHELTEKYVTGRL 249
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
3-256 |
3.88e-39 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 136.51 E-value: 3.88e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 3 ENKLNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL-----EKPSAGSIVVSGQNIglvrdkdg 77
Cdd:PRK14267 2 KFAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLlelneEARVEGEVRLFGRNI-------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 78 qlKVADKNQLRLlRTRLTMVFQHFNLWSHMTVLENV-MEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGK---YPVHL 153
Cdd:PRK14267 74 --YSPDVDPIEV-RREVGMVFQYPNPFPHLTIYDNVaIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRlndYPSNL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEgKTMVVVTHEMGFARHVSTHVIFLHQGKIEEE 233
Cdd:PRK14267 151 SGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE-YTIVLVTHSPAQAARVSDYVAFLYLGKLIEV 229
|
250 260
....*....|....*....|...
gi 757799860 234 GDPEQVFGNPQSPRLQQFLKGSL 256
Cdd:PRK14267 230 GPTRKVFENPEHELTEKYVTGAL 252
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-246 |
4.50e-39 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 142.13 E-value: 4.50e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSENKLNVIDLH----KHYGEHEVLKGVSLQANAGDVISIIGSSGSGKS-TFLRCINFLEKPSA---GSIVVSGQNIglv 72
Cdd:COG4172 2 MSMPLLSVEDLSvafgQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSvTALSILRLLPDPAAhpsGSILFDGQDL--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 73 rdkdgqLKvADKNQLRLLR-TRLTMVFQH----FNlwSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ- 146
Cdd:COG4172 79 ------LG-LSERELRRIRgNRIAMIFQEpmtsLN--PLHTIGKQIAEVLRLHRGLSGAAARARALELLERVGIPDPERr 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 147 -GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHVSTHVIF 224
Cdd:COG4172 150 lDAYPHQLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLqRELGMALLLITHDLGVVRRFADRVAV 229
|
250 260
....*....|....*....|..
gi 757799860 225 LHQGKIEEEGDPEQVFGNPQSP 246
Cdd:COG4172 230 MRQGEIVEQGPTAELFAAPQHP 251
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
8-229 |
7.90e-39 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 132.75 E-value: 7.90e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 8 VIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgqlkvadKNQL 87
Cdd:cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIA-------------KLPL 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 88 RLLRTRLTMVFQhfnlwshmtvlenvmeapiqvlglskqeareravkylakvgideraqgkypvhLSGGQQQRVSIARAL 167
Cdd:cd00267 69 EELRRRIGYVPQ-----------------------------------------------------LSGGQRQRVALARAL 95
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757799860 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGK 229
Cdd:cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
44-244 |
1.67e-38 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 135.92 E-value: 1.67e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkVADKNQ--LRLLRTRLTMVFQ--HFNLWSHmTVLENVMEAPIQ 119
Cdd:PRK13634 46 KSTLLQHLNGLLQPTSGTVTIGERVI-----------TAGKKNkkLKPLRKKVGIVFQfpEHQLFEE-TVEKDICFGPMN 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 120 vLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL- 198
Cdd:PRK13634 114 -FGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLh 192
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 757799860 199 AEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQ 244
Cdd:PRK13634 193 KEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
44-244 |
2.06e-38 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 135.73 E-value: 2.06e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgQLKVADKNqLRLLRTRLTMVFQ--HFNLWSHmTVLENVMEAPIQvL 121
Cdd:PRK13641 46 KSTLMQHFNALLKPSSGTITIAGYHI--------TPETGNKN-LKKLRKKVSLVFQfpEAQLFEN-TVLKDVEFGPKN-F 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 122 GLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE 201
Cdd:PRK13641 115 GFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA 194
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 757799860 202 GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQ 244
Cdd:PRK13641 195 GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKE 237
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
6-247 |
2.12e-38 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 135.21 E-value: 2.12e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLvrDKDGQLKVadk 84
Cdd:PRK13639 2 LETRDLKYSYPDgTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKY--DKKSLLEV--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 85 nqlrllRTRLTMVFQHFN--LWSHmTVLENVMEAPIQvLGLSKQEARERAVKYLAKVGIdERAQGKYPVHLSGGQQQRVS 162
Cdd:PRK13639 77 ------RKTVGIVFQNPDdqLFAP-TVEEDVAFGPLN-LGLSKEEVEKRVKEALKAVGM-EGFENKPPHHLSGGQKKRVA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGN 242
Cdd:PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227
|
....*
gi 757799860 243 PQSPR 247
Cdd:PRK13639 228 IETIR 232
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
10-234 |
2.97e-38 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 133.15 E-value: 2.97e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 10 DLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQnigLVRDkdgqLKVADKNqlrl 89
Cdd:cd03301 5 NVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGR---DVTD----LPPKDRD---- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 90 lrtrLTMVFQHFNLWSHMTVLENvMEAPIQVLGLSKQEARERaVKYLAKV-GIDERAQgKYPVHLSGGQQQRVSIARALA 168
Cdd:cd03301 74 ----IAMVFQNYALYPHMTVYDN-IAFGLKLRKVPKDEIDER-VREVAELlQIEHLLD-RKPKQLSGGQRQRVALGRAIV 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 169 MEPEVLLFDEPTSALDP----ELVGEVLRIMQQLaeeGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEG 234
Cdd:cd03301 147 REPKVFLMDEPLSNLDAklrvQMRAELKRLQQRL---GTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
6-239 |
7.30e-38 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 132.17 E-value: 7.30e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvADKN 85
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDI------------TGLP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRTRLTMVFQHFNLWSHMTVLENvMEAPIQVLGLSKQEAR-ERAVKYLAKVG--IDERAQgkypvHLSGGQQQRVS 162
Cdd:cd03224 69 PHERARAGIGYVPEGRRIFPELTVEEN-LLLGAYARRRAKRKARlERVYELFPRLKerRKQLAG-----TLSGGEQQMLA 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 757799860 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQV 239
Cdd:cd03224 143 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
10-243 |
2.10e-37 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 135.07 E-value: 2.10e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 10 DLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRdkdgqlkvADKnqlRL 89
Cdd:PRK09452 19 GISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP--------AEN---RH 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 90 LRTrltmVFQHFNLWSHMTVLENVmeapiqVLGL-----SKQEARERAVKYLAKVGIDERAQGKyPVHLSGGQQQRVSIA 164
Cdd:PRK09452 88 VNT----VFQSYALFPHMTVFENV------AFGLrmqktPAAEITPRVMEALRMVQLEEFAQRK-PHQLSGGQQQRVAIA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 165 RALAMEPEVLLFDEPTSALDPELvgevLRIMQ----QLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQV 239
Cdd:PRK09452 157 RAVVNKPKVLLLDESLSALDYKL----RKQMQnelkALQRKlGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232
|
....
gi 757799860 240 FGNP 243
Cdd:PRK09452 233 YEEP 236
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-254 |
2.15e-37 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 131.82 E-value: 2.15e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSENKLNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL-----EKPSAGSIVVSGQNIGLVRdk 75
Cdd:PRK14239 1 MTEPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndlnpEVTITGSIVYNGHNIYSPR-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 76 dgqlkvADKNQLRllrTRLTMVFQHFNLWShMTVLENVMEApIQVLGLSKQEARERAV-KYLAKVGIDERAQGKY---PV 151
Cdd:PRK14239 79 ------TDTVDLR---KEIGMVFQQPNPFP-MSIYENVVYG-LRLKGIKDKQVLDEAVeKSLKGASIWDEVKDRLhdsAL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEgKTMVVVTHEMGFARHVSTHVIFLHQGKIE 231
Cdd:PRK14239 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDD-YTMLLVTRSMQQASRISDRTGFFLDGDLI 226
|
250 260
....*....|....*....|...
gi 757799860 232 EEGDPEQVFGNPQSPRLQQFLKG 254
Cdd:PRK14239 227 EYNDTKQMFMNPKHKETEDYISG 249
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
10-230 |
2.67e-37 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 130.35 E-value: 2.67e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 10 DLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDG---QLKVADKNq 86
Cdd:cd03235 4 DLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGyvpQRRSIDRD- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 87 lrllrtrltmvfqhFNLwshmTVLENVMEAPIQVLGLSK---QEARERAVKYLAKVGIDERAqgKYPV-HLSGGQQQRVS 162
Cdd:cd03235 83 --------------FPI----SVRDVVLMGLYGHKGLFRrlsKADKAKVDEALERVGLSELA--DRQIgELSGGQQQRVL 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757799860 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKI 230
Cdd:cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
17-242 |
3.75e-37 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 132.09 E-value: 3.75e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvADKN-QLRLLRTRLT 95
Cdd:PRK13637 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI------------TDKKvKLSDIRKKVG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 96 MVFQH--FNLWSHmTVLENVMEAPIQvLGLSKQEARERAVKYLAKVGID-ERAQGKYPVHLSGGQQQRVSIARALAMEPE 172
Cdd:PRK13637 87 LVFQYpeYQLFEE-TIEKDIAFGPIN-LGLSEEEIENRVKRAMNIVGLDyEDYKDKSPFELSGGQKRRVAIAGVVAMEPK 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 757799860 173 VLLFDEPTSALDPELVGEVLRIMQQLAEEGK-TMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGN 242
Cdd:PRK13637 165 ILILDEPTAGLDPKGRDEILNKIKELHKEYNmTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
6-252 |
7.64e-37 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 130.15 E-value: 7.64e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEvLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvadkN 85
Cdd:cd03299 1 LKVENLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI---------------T 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVmEAPIQVLGLSKQEaRERAVKYLAKV-GIDERAQgKYPVHLSGGQQQRVSIA 164
Cdd:cd03299 65 NLPPEKRDISYVPQNYALFPHMTVYKNI-AYGLKKRKVDKKE-IERKVLEIAEMlGIDHLLN-RKPETLSGGEQQRVAIA 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVV-VTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNP 243
Cdd:cd03299 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLhVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221
|
....*....
gi 757799860 244 QSPRLQQFL 252
Cdd:cd03299 222 KNEFVAEFL 230
|
|
| ABC_ATP_DarD |
NF038007 |
darobactin export ABC transporter ATP-binding protein; |
20-210 |
3.98e-36 |
|
darobactin export ABC transporter ATP-binding protein;
Pssm-ID: 411600 [Multi-domain] Cd Length: 218 Bit Score: 127.53 E-value: 3.98e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgQLKVADKNQLRllRTRLTMVFQ 99
Cdd:NF038007 20 VLNHLNFSVEKGDFVSIMGPSGSGKSTLLNIIGMFDSLDSGSLTLAGKEVT-------NLSYSQKIILR--RELIGYIFQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 100 HFNLWSHMTVLENVmEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKyPVHLSGGQQQRVSIARALAMEPEVLLFDEP 179
Cdd:NF038007 91 SFNLIPHLSIFDNV-ALPLKYRGVAKKERIERVNQVLNLFGIDNRRNHK-PMQLSGGQQQRVAIARAMVSNPALLLADEP 168
|
170 180 190
....*....|....*....|....*....|.
gi 757799860 180 TSALDPELVGEVLRIMQQLAEEGKTMVVVTH 210
Cdd:NF038007 169 TGNLDSKNARAVLQQLKYINQKGTTIIMVTH 199
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
44-240 |
5.22e-36 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 129.09 E-value: 5.22e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlKVADKNQ-LRLLRTRLTMVFQ--HFNLWSHmTVLENVMEAPiQV 120
Cdd:PRK13649 46 KSTIMQLLNGLHVPTQGSVRVDDTLI----------TSTSKNKdIKQIRKKVGLVFQfpESQLFEE-TVLKDVAFGP-QN 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 121 LGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE 200
Cdd:PRK13649 114 FGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ 193
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 757799860 201 EGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVF 240
Cdd:PRK13649 194 SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF 233
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
10-230 |
7.75e-36 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 125.63 E-value: 7.75e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 10 DLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvadknqlrl 89
Cdd:cd03214 4 NLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL-------------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 90 lrtrltmvfqhfNLWSHmtvlenvmeapiqvlglsKQEARERAV--KYLAKVGIDERAQGKYPvHLSGGQQQRVSIARAL 167
Cdd:cd03214 64 ------------ASLSP------------------KELARKIAYvpQALELLGLAHLADRPFN-ELSGGERQRVLLARAL 112
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757799860 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLA-EEGKTMVVVTHEMGFARHVSTHVIFLHQGKI 230
Cdd:cd03214 113 AQEPPILLLDEPTSHLDIAHQIELLELLRRLArERGKTVVMVLHDLNLAARYADRVILLKDGRI 176
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
16-215 |
1.93e-35 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 124.84 E-value: 1.93e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLvrdkdgqlkvaDKNQLRLLRTRLT 95
Cdd:TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY-----------SRKGLLERRQRVG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 96 MVFQHFN--LWShMTVLENVMEAPIQvLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAMEPEV 173
Cdd:TIGR01166 72 LVFQDPDdqLFA-ADVDQDVAFGPLN-LGLSEAEVERRVREALTAVGASGLRE-RPTHCLSGGEKKRVAIAGAVAMRPDV 148
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 757799860 174 LLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA 215
Cdd:TIGR01166 149 LLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDLA 190
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
14-237 |
2.17e-35 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 125.76 E-value: 2.17e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 14 HYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKdgqlkvadknQLRLLRTR 93
Cdd:PRK10908 11 YLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNR----------EVPFLRRQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 94 LTMVFQHFNLWSHMTVLENVmEAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAMEPEV 173
Cdd:PRK10908 81 IGMIFQDHHLLMDRTVYDNV-AIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-NFPIQLSGGEQQRVGIARAVVNKPAV 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757799860 174 LLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPE 237
Cdd:PRK10908 159 LLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGGVGGE 222
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
44-252 |
2.30e-35 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 129.07 E-value: 2.30e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNiglvrdkdgqlkVADknqlRLLRTR-LTMVFQHFNLWSHMTVLENVmEAPIQVLG 122
Cdd:PRK11432 45 KTTVLRLVAGLEKPTEGQIFIDGED------------VTH----RSIQQRdICMVFQSYALFPHMSLGENV-GYGLKMLG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 123 LSKQEARERAVKYLAKV---GIDERaqgkYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPEL---VGEVLRIMQ 196
Cdd:PRK11432 108 VPKEERKQRVKEALELVdlaGFEDR----YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLrrsMREKIRELQ 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 757799860 197 QlaEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFL 252
Cdd:PRK11432 184 Q--QFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASFM 237
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
44-245 |
2.59e-35 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 128.38 E-value: 2.59e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKdgqlkvadknqlrllRTRLTMVFQHFNLWSHMTVLENVmEAPIQVLGL 123
Cdd:TIGR01187 9 KTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH---------------LRHINMVFQSYALFPHMTVEENV-AFGLKMRKV 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 124 SKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVG----EVLRIMQQLa 199
Cdd:TIGR01187 73 PRAEIKPRVLEALRLVQLEEFAD-RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDqmqlELKTIQEQL- 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 757799860 200 eeGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQS 245
Cdd:TIGR01187 151 --GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPAN 194
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
21-254 |
3.64e-35 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 129.77 E-value: 3.64e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgqlKVADKNQLRLLRTRLTMVFQH 100
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIA---------KISDAELREVRRKKIAMVFQS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 101 FNLWSHMTVLENVMEApIQVLGLSKQEARERAVKYLAKVGIDERAQGkYPVHLSGGQQQRVSIARALAMEPEVLLFDEPT 180
Cdd:PRK10070 115 FALMPHMTVLDNTAFG-MELAGINAEERREKALDALRQVGLENYAHS-YPDELSGGMRQRVGLARALAINPDILLMDEAF 192
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 757799860 181 SALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKG 254
Cdd:PRK10070 193 SALDPLIRTEMQDELVKLqAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRG 267
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
44-250 |
4.95e-35 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 128.29 E-value: 4.95e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVsgqniglvrdkDGQLKVADKNQLRLL--RTRLTMVFQHFNLWSHMTVLENVMeapiqvL 121
Cdd:COG4148 38 KTTLLRAIAGLERPDSGRIRL-----------GGEVLQDSARGIFLPphRRRIGYVFQEARLFPHLSVRGNLL------Y 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 122 GLSKQEARERAVKyLAKV----GID---ERaqgkYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRI 194
Cdd:COG4148 101 GRKRAPRAERRIS-FDEVvellGIGhllDR----RPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKAEILPY 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 757799860 195 MQQLAEEGKT-MVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQ 250
Cdd:COG4148 176 LERLRDELDIpILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRPDLLPLAG 232
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
13-237 |
6.82e-35 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 126.74 E-value: 6.82e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 13 KHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglVRDKDGqlkvadknqlrlLRT 92
Cdd:TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV--VREPRK------------VRR 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 93 RLTMVFQHFNLWSHMTVLENvMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAMEPE 172
Cdd:TIGR01188 67 SIGIVPQYASVDEDLTGREN-LEMMGRLYGLPKDEAEERAEELLELFELGEAAD-RPVGTYSGGMRRRLDIAASLIHQPD 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 757799860 173 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPE 237
Cdd:TIGR01188 145 VLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPE 209
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
44-181 |
9.79e-35 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 121.99 E-value: 9.79e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvaDKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEaPIQVLGL 123
Cdd:pfam00005 24 KSTLLKLIAGLLSPTEGTILLDGQDL-------------TDDERKSLRKEIGYVFQDPQLFPRLTVRENLRL-GLLLKGL 89
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 757799860 124 SKQEARERAVKYLAKVGIDE---RAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTS 181
Cdd:pfam00005 90 SKREKDARAEEALEKLGLGDladRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
1-246 |
2.01e-34 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 126.36 E-value: 2.01e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSENK---LNVIDLHKHYG----------EHEVLK---GVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVV 64
Cdd:PRK15079 1 VTEGKkvlLEVADLKVHFDikdgkqwfwqPPKTLKavdGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 65 SGQNIglvrdkdgqLKVADKnQLRLLRTRLTMVFQH--FNLWSHMTVLENVMEaPIQVL--GLSKQEARERAVKYLAKVG 140
Cdd:PRK15079 81 LGKDL---------LGMKDD-EWRAVRSDIQMIFQDplASLNPRMTIGEIIAE-PLRTYhpKLSRQEVKDRVKAMMLKVG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 141 IDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVS 219
Cdd:PRK15079 150 LLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREmGLSLIFIAHDLAVVKHIS 229
|
250 260
....*....|....*....|....*..
gi 757799860 220 THVIFLHQGKIEEEGDPEQVFGNPQSP 246
Cdd:PRK15079 230 DRVLVMYLGHAVELGTYDEVYHNPLHP 256
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
6-225 |
5.36e-34 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 122.54 E-value: 5.36e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHE-------VLKGVSLQANAGDVISIIGSSGSGKSTFLRCI--NFLekPSAGSIvvsgqnigLVRDKD 76
Cdd:COG4778 5 LEVENLSKTFTLHLqggkrlpVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIygNYL--PDSGSI--------LVRHDG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 77 GQLKVADKNQ---LRLLRTRLTMVFQHFNLWSHMTVLENVMEaPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHL 153
Cdd:COG4778 75 GWVDLAQASPreiLALRRRTIGYVSQFLRVIPRVSALDVVAE-PLLERGVDREEARARARELLARLNLPERLWDLPPATF 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757799860 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFL 225
Cdd:COG4778 154 SGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAIIGIFHDEEVREAVADRVVDV 225
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
6-244 |
7.37e-34 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 122.01 E-value: 7.37e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgQLKVAdkn 85
Cdd:COG0410 4 LEVENLHAGYGGIHVLHGVSLEVEEGEIvallgrngagKTTLLKAISGLLPPRSGSIRFDGEDIT-------GLPPH--- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 qlRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR-ERAVKY---LAkvgidERAQ---GkypvHLSGGQQ 158
Cdd:COG0410 74 --RIARLGIGYVPEGRRIFPSLTVEENLLLGAYARRDRAEVRADlERVYELfprLK-----ERRRqraG----TLSGGEQ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 159 QRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQ 238
Cdd:COG0410 143 QMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAE 222
|
....*.
gi 757799860 239 VFGNPQ 244
Cdd:COG0410 223 LLADPE 228
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
6-239 |
1.91e-33 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 121.09 E-value: 1.91e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGlvRDKDGQlkvadkn 85
Cdd:TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDIT--KLPPHE------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 qlrllRTRLTM--VFQHFNLWSHMTVLENVMeapiqvLGLSKQEARERAvkylakvgIDERAQGKYPV----------HL 153
Cdd:TIGR03410 72 -----RARAGIayVPQGREIFPRLTVEENLL------TGLAALPRRSRK--------IPDEIYELFPVlkemlgrrggDL 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGK-TMVVVTHEMGFARHVSTHVIFLHQGKIEE 232
Cdd:TIGR03410 133 SGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGmAILLVEQYLDFARELADRYYVMERGRVVA 212
|
....*..
gi 757799860 233 EGDPEQV 239
Cdd:TIGR03410 213 SGAGDEL 219
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-254 |
7.67e-33 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 120.35 E-value: 7.67e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSEnkLNVIDLHKHYG----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNI---Glvr 73
Cdd:COG4525 1 MSM--LTVRHVSVRYPgggqPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVtgpG--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 74 dkdgqlkvADKNqlrllrtrltMVFQHFNLWSHMTVLENVmEAPIQVLGLSKQEARERAVKYLAKVGIDErAQGKYPVHL 153
Cdd:COG4525 76 --------ADRG----------VVFQKDALLPWLNVLDNV-AFGLRLRGVPKAERRARAEELLALVGLAD-FARRRIWQL 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDpELVGEVlriMQQL-----AEEGKTMVVVTHEMGFARHVSTHVIFL--H 226
Cdd:COG4525 136 SGGMRQRVGIARALAADPRFLLMDEPFGALD-ALTREQ---MQELlldvwQRTGKGVFLITHSVEEALFLATRLVVMspG 211
|
250 260
....*....|....*....|....*...
gi 757799860 227 QGKIEEEGDPEqvFGnpqsprlQQFLKG 254
Cdd:COG4525 212 PGRIVERLELD--FS-------RRFLAG 230
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
3-237 |
1.75e-32 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 119.84 E-value: 1.75e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 3 ENKLNVIDLHKHYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQniglvrdkdgqlKV 81
Cdd:PRK13647 2 DNIIEVEDLHFRYKDgTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGR------------EV 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 82 ADKNQlRLLRTRLTMVFQHFN--LWShMTVLENVMEAPIQvLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQ 159
Cdd:PRK13647 70 NAENE-KWVRSKVGLVFQDPDdqVFS-STVWDDVAFGPVN-MGLDKDEVERRVEEALKAVRMWDFRD-KPPYHLSYGQKK 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757799860 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPE 237
Cdd:PRK13647 146 RVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS 223
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
44-234 |
1.80e-32 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 117.98 E-value: 1.80e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgQLKVADKNqlrllrtrLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 123
Cdd:cd03298 37 KSTLLNLIAGFETPQSGRVLINGVDVT-------AAPPADRP--------VSMLFQENNLFAHLTVEQNVGLGLSPGLKL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 124 SKQEaRERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL-AEEG 202
Cdd:cd03298 102 TAED-RQAIEVALARVGLAGLEK-RLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLhAETK 179
|
170 180 190
....*....|....*....|....*....|..
gi 757799860 203 KTMVVVTHEMGFARHVSTHVIFLHQGKIEEEG 234
Cdd:cd03298 180 MTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
10-239 |
2.78e-32 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 123.20 E-value: 2.78e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 10 DLHKHYGEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQniglvrdkdgqlKVADKNQLRL 89
Cdd:COG1129 9 GISKSFGGVKALDGVSLELRPGEVhallgengagKSTLMKILSGVYQPDSGEILLDGE------------PVRFRSPRDA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 90 LRTRLTMVFQHFNLWSHMTVLENVMeapiqvLG--------LSKQEARERAVKYLAKVG--IDERAqgkyPV-HLSGGQQ 158
Cdd:COG1129 77 QAAGIAIIHQELNLVPNLSVAENIF------LGreprrgglIDWRAMRRRARELLARLGldIDPDT----PVgDLSVAQQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 159 QRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQ 238
Cdd:COG1129 147 QLVEIARALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQGVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAE 226
|
.
gi 757799860 239 V 239
Cdd:COG1129 227 L 227
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
10-229 |
3.44e-32 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 115.94 E-value: 3.44e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 10 DLHKHYG--EHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvaDKNQL 87
Cdd:cd03228 5 NVSFSYPgrPKPVLKDVSLTIKPGEKvaivgpsgsgKSTLLKLLLRLYDPTSGEILIDGVDL-------------RDLDL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 88 RLLRTRLTMVFQHFNLWShMTVLENVmeapiqvlglskqeareravkylakvgideraqgkypvhLSGGQQQRVSIARAL 167
Cdd:cd03228 72 ESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------LSGGQRQRIAIARAL 111
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757799860 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAeEGKTMVVVTHEMGFARHVsTHVIFLHQGK 229
Cdd:cd03228 112 LRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLSTIRDA-DRIIVLDDGR 171
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
6-240 |
4.05e-32 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 118.34 E-value: 4.05e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdGQLKVADkn 85
Cdd:PRK13548 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPL-------ADWSPAE-- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 qlrlLRTRLTMVFQHFNLWSHMTVLEnVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPvHLSGGQQQRVSIAR 165
Cdd:PRK13548 74 ----LARRRAVLPQHSSLSFPFTVEE-VVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYP-QLSGGEQQRVQLAR 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 166 ALA------MEPEVLLFDEPTSALDPELVGEVLRIMQQLA-EEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQ 238
Cdd:PRK13548 148 VLAqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAhERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227
|
..
gi 757799860 239 VF 240
Cdd:PRK13548 228 VL 229
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
6-230 |
1.00e-31 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 117.09 E-value: 1.00e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKdgqlkvadkn 85
Cdd:PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEARED---------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 qlrllrTRltMVFQHFNLWSHMTVLENVMeapiqvLGLsKQEARERAVKYLAKVGIDERAqGKYPVHLSGGQQQRVSIAR 165
Cdd:PRK11247 83 ------TR--LMFQDARLLPWKKVIDNVG------LGL-KGQWRDAALQALAAVGLADRA-NEWPAALSGGQKQRVALAR 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 757799860 166 ALAMEPEVLLFDEPTSALDPelvgeVLRI-MQQLAE-----EGKTMVVVTHEMGFARHVSTHVIFLHQGKI 230
Cdd:PRK11247 147 ALIHRPGLLLLDEPLGALDA-----LTRIeMQDLIEslwqqHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
10-239 |
1.39e-31 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 122.64 E-value: 1.39e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 10 DLHKHYGEHE--VLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgQLKVADknql 87
Cdd:COG2274 478 NVSFRYPGDSppVLDNISLTIKPGERvaivgrsgsgKSTLLKLLLGLYEPTSGRILIDGIDLR-------QIDPAS---- 546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 88 rlLRTRLTMVFQHFNLWShMTVLEN------------VMEApIQVLGLSkQEARERAVKYLAKVGidERAQGkypvhLSG 155
Cdd:COG2274 547 --LRRQIGVVLQDVFLFS-GTIRENitlgdpdatdeeIIEA-ARLAGLH-DFIEALPMGYDTVVG--EGGSN-----LSG 614
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAeEGKTMVVVTHEMGFARHVStHVIFLHQGKIEEEGD 235
Cdd:COG2274 615 GQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLL-KGRTVIIIAHRLSTIRLAD-RIIVLDKGRIVEDGT 692
|
....
gi 757799860 236 PEQV 239
Cdd:COG2274 693 HEEL 696
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-239 |
2.05e-31 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 120.90 E-value: 2.05e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSENKLNVIDLHKHYGEHEVLKGVSLQAN------------AGdvisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQn 68
Cdd:COG3845 1 MMPPALELRGITKRFGGVVANDDVSLTVRpgeihallgengAG------------KSTLMKILYGLYQPDSGEILIDGK- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 69 iglvrdkdgqlKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM--EAPIQVLGLSKQEARERAVKYLAKVG--IDER 144
Cdd:COG3845 68 -----------PVRIRSPRDAIALGIGMVHQHFMLVPNLTVAENIVlgLEPTKGGRLDRKAARARIRELSERYGldVDPD 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 145 AqgkyPVH-LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVI 223
Cdd:COG3845 137 A----KVEdLSVGEQQRVEILKALYRGARILILDEPTAVLTPQEADELFEILRRLAAEGKSIIFITHKLREVMAIADRVT 212
|
250
....*....|....*.
gi 757799860 224 FLHQGKIEEEGDPEQV 239
Cdd:COG3845 213 VLRRGKVVGTVDTAET 228
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
6-250 |
2.36e-31 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 116.37 E-value: 2.36e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvADKN 85
Cdd:COG4559 2 LEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPL------------AAWS 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRTRLTMVfQHfnlwSHM----TVLENVMeapiqvLGL-----SKQEARERAVKYLAKVGIDERAQGKYPvHLSGG 156
Cdd:COG4559 70 PWELARRRAVLP-QH----SSLafpfTVEEVVA------LGRaphgsSAAQDRQIVREALALVGLAHLAGRSYQ-TLSGG 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 157 QQQRVSIARALA-------MEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGK 229
Cdd:COG4559 138 EQQRVQLARVLAqlwepvdGGPRWLFLDEPTSALDLAHQHAVLRLARQLARRGGGVVAVLHDLNLAAQYADRILLLHQGR 217
|
250 260
....*....|....*....|.
gi 757799860 230 IEEEGDPEQVFgnpQSPRLQQ 250
Cdd:COG4559 218 LVAQGTPEEVL---TDELLER 235
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
10-238 |
3.33e-31 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 114.77 E-value: 3.33e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 10 DLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglVRDKDGqlkvadknqlrl 89
Cdd:cd03265 5 NLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV--VREPRE------------ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 90 LRTRLTMVFQHFNLWSHMTVLENV-MEAPIQvlGLSKQEARERAVKYLAKVGIDErAQGKYPVHLSGGQQQRVSIARALA 168
Cdd:cd03265 71 VRRRIGIVFQDLSVDDELTGWENLyIHARLY--GVPGAERRERIDELLDFVGLLE-AADRLVKTYSGGMRRRLEIARSLV 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 757799860 169 MEPEVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQ 238
Cdd:cd03265 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLkEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
14-238 |
4.47e-31 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 120.65 E-value: 4.47e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 14 HY-GEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIglvRDkdgqLKVADknqlrlLRT 92
Cdd:COG1132 348 SYpGDRPVLKDISLTIPPGETvalvgpsgsgKSTLVNLLLRFYDPTSGRILIDGVDI---RD----LTLES------LRR 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 93 RLTMVFQHFNLWsHMTVLENvmeapiqvLGLSKQEA-RERAVKYLAKVGIDERAQGKyP-----------VHLSGGQQQR 160
Cdd:COG1132 415 QIGVVPQDTFLF-SGTIREN--------IRYGRPDAtDEEVEEAAKAAQAHEFIEAL-PdgydtvvgergVNLSGGQRQR 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 161 VSIARALAMEPEVLLFDEPTSALDPElvGEVLrIMQQLAE--EGKTMVVVTHemgfaRhVST-----HVIFLHQGKIEEE 233
Cdd:COG1132 485 IAIARALLKDPPILILDEATSALDTE--TEAL-IQEALERlmKGRTTIVIAH-----R-LSTirnadRILVLDDGRIVEQ 555
|
....*
gi 757799860 234 GDPEQ 238
Cdd:COG1132 556 GTHEE 560
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
6-246 |
4.49e-31 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 115.70 E-value: 4.49e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEH---------EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQniglvrdkd 76
Cdd:COG4167 5 LEVRNLSKTFKYRtglfrrqqfEAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEILINGH--------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 77 gQLKVAD-KNQLRLLRtrltMVFQHFN--LWSHMTVLEnVMEAPIQVL-GLSKQEARERAVKYLAKVGIDERAQGKYPVH 152
Cdd:COG4167 76 -KLEYGDyKYRCKHIR----MIFQDPNtsLNPRLNIGQ-ILEEPLRLNtDLTAEEREERIFATLRLVGLLPEHANFYPHM 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIE 231
Cdd:COG4167 150 LSSGQKQRVALARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKlGISYIYVSQHLGIVKHISDKVLVMHQGEVV 229
|
250
....*....|....*
gi 757799860 232 EEGDPEQVFGNPQSP 246
Cdd:COG4167 230 EYGKTAEVFANPQHE 244
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-247 |
9.17e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 115.33 E-value: 9.17e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSENKLNVIDLHKHYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDkdGQL 79
Cdd:PRK13636 1 MEDYILKVEELNYNYSDgTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRK--GLM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 80 KvadknqlrlLRTRLTMVFQH--FNLWShMTVLENVMEAPIQvLGLSKQEARERAVKYLAKVGIdERAQGKyPVH-LSGG 156
Cdd:PRK13636 79 K---------LRESVGMVFQDpdNQLFS-ASVYQDVSFGAVN-LKLPEDEVRKRVDNALKRTGI-EHLKDK-PTHcLSFG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGD 235
Cdd:PRK13636 146 QKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKElGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 225
|
250
....*....|..
gi 757799860 236 PEQVFGNPQSPR 247
Cdd:PRK13636 226 PKEVFAEKEMLR 237
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
6-245 |
1.61e-30 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 116.86 E-value: 1.61e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDkdgqlkvadkn 85
Cdd:PRK11607 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP----------- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 qlrlLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVlGLSKQEARERAVKYLAKVGIDERAQGKyPVHLSGGQQQRVSIAR 165
Cdd:PRK11607 89 ----YQRPINMMFQSYALFPHMTVEQNIAFGLKQD-KLPKAEIASRVNEMLGLVHMQEFAKRK-PHQLSGGQRQRVALAR 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 166 ALAMEPEVLLFDEPTSALDPELVG----EVLRIMQQLaeeGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFG 241
Cdd:PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDrmqlEVVDILERV---GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239
|
....
gi 757799860 242 NPQS 245
Cdd:PRK11607 240 HPTT 243
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
44-243 |
1.72e-30 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 114.70 E-value: 1.72e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgqlkvaDKNQLRLLRTRLTMVFQHFNL-WSHMTVLENVMEAPiQVLG 122
Cdd:PRK13644 41 KSTLALHLNGLLRPQKGKVLVSGIDTG------------DFSKLQGIRKLVGIVFQNPETqFVGRTVEEDLAFGP-ENLC 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 123 LSKQEARERAVKYLAKVGIdERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEG 202
Cdd:PRK13644 108 LPPIEIRKRVDRALAEIGL-EKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKG 186
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 757799860 203 KTMVVVTHEMGfARHVSTHVIFLHQGKIEEEGDPEQVFGNP 243
Cdd:PRK13644 187 KTIVYITHNLE-ELHDADRIIVMDRGKIVLEGEPENVLSDV 226
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
44-212 |
1.74e-30 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 112.77 E-value: 1.74e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIglvrdKDGQLKVADKNQLRllrtRLTMVFQHFNLWSHMTVLENVMEApiqVLGL 123
Cdd:cd03297 36 KSTLLRCIAGLEKPDGGTIVLNGTVL-----FDSRKKINLPPQQR----KIGLVFQQYALFPHLNVRENLAFG---LKRK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 124 SKQEARERAVKYLAKVGIDErAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-G 202
Cdd:cd03297 104 RNREDRISVDELLDLLGLDH-LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNlN 182
|
170
....*....|
gi 757799860 203 KTMVVVTHEM 212
Cdd:cd03297 183 IPVIFVTHDL 192
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
6-219 |
3.48e-30 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 111.80 E-value: 3.48e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKdgqlkvadkn 85
Cdd:COG4133 3 LEAENLSCRRGERLLFSGLSFTLAAGEAlaltgpngsgKTTLLRILAGLLPPSAGEVLWNGEPIRDARED---------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 qlrlLRTRLTMVFQHFNLWSHMTVLENV-MEApiQVLGLSKQEARERAVkyLAKVGIDERAQgKYPVHLSGGQQQRVSIA 164
Cdd:COG4133 73 ----YRRRLAYLGHADGLKPELTVRENLrFWA--ALYGLRADREAIDEA--LEAVGLAGLAD-LPVRQLSAGQKRRVALA 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 757799860 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH---EMGFARHVS 219
Cdd:COG4133 144 RLLLSPAPLWLLDEPFTALDAAGVALLAELIAAHLARGGAVLLTTHqplELAAARVLD 201
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
16-252 |
4.33e-30 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 117.50 E-value: 4.33e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKST----FLRCINflekpSAGSIVVSGQniglvrdkdgQLKVADKNQLRLLR 91
Cdd:PRK15134 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLIN-----SQGEIWFDGQ----------PLHNLNRRQLLPVR 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 92 TRLTMVFQHFN--LWSHMTVLENVMEApIQV--LGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL 167
Cdd:PRK15134 362 HRIQVVFQDPNssLNPRLNVLQIIEEG-LRVhqPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARAL 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGK-TMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSP 246
Cdd:PRK15134 441 ILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQlAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQE 520
|
....*.
gi 757799860 247 RLQQFL 252
Cdd:PRK15134 521 YTRQLL 526
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
6-249 |
6.04e-30 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 112.98 E-value: 6.04e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEH---------EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkd 76
Cdd:TIGR02769 3 LEVRDVTHTYRTGglfgakqraPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDL------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 77 GQLkvaDKNQLRLLRTRLTMVFQH----FNlwSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVH 152
Cdd:TIGR02769 76 YQL---DRKQRRAFRRDVQLVFQDspsaVN--PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIE 231
Cdd:TIGR02769 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLqQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230
|
250 260
....*....|....*....|
gi 757799860 232 EEGDPEQV--FGNPQSPRLQ 249
Cdd:TIGR02769 231 EECDVAQLlsFKHPAGRNLQ 250
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-240 |
7.37e-30 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 112.80 E-value: 7.37e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSENKLNVIDLHKHYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQ--NIGLVRDkd 76
Cdd:PRK13635 1 MKEEIIRVEHISFRYPDAAtyALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMvlSEETVWD-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 77 gqlkvadknqlrlLRTRLTMVFQH-FNLWSHMTV-------LENVmeapiqvlGLSKQEARERAVKYLAKVGIDERAQgK 148
Cdd:PRK13635 79 -------------VRRQVGMVFQNpDNQFVGATVqddvafgLENI--------GVPREEMVERVDQALRQVGMEDFLN-R 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 149 YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGK-TMVVVTHEMGFARHvSTHVIFLHQ 227
Cdd:PRK13635 137 EPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGiTVLSITHDLDEAAQ-ADRVIVMNK 215
|
250
....*....|...
gi 757799860 228 GKIEEEGDPEQVF 240
Cdd:PRK13635 216 GEILEEGTPEEIF 228
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
16-238 |
1.44e-29 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 116.01 E-value: 1.44e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCI-NFLEkPSAGSIVVSGQNIGlvrdkdgQLKVADknqlrlLRTRL 94
Cdd:COG4988 348 GGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLlGFLP-PYSGSILINGVDLS-------DLDPAS------WRRQI 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 95 TMVFQH---FnlwsHMTVLENvmeapiqvLGLSKQEARERAVKY-LAKVGID---------------ERAQGkypvhLSG 155
Cdd:COG4988 414 AWVPQNpylF----AGTIREN--------LRLGRPDASDEELEAaLEAAGLDefvaalpdgldtplgEGGRG-----LSG 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAeEGKTMVVVTHEMGFARHVStHVIFLHQGKIEEEGD 235
Cdd:COG4988 477 GQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLA-KGRTVILITHRLALLAQAD-RILVLDDGRIVEQGT 554
|
...
gi 757799860 236 PEQ 238
Cdd:COG4988 555 HEE 557
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
6-239 |
2.16e-29 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 112.12 E-value: 2.16e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQ-----------AN-AGdvisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIGL-V 72
Cdd:COG4152 2 LELKGLTKRFGDKTAVDDVSFTvpkgeifgllgPNgAG------------KTTTIRIILGILAPDSGEVLWDGEPLDPeD 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 73 RDKDG----------QLKVADknQLRLLrTRLTmvfqhfnlwshmtvlenvmeapiqvlGLSKQEARERAVKYLAKVGID 142
Cdd:COG4152 70 RRRIGylpeerglypKMKVGE--QLVYL-ARLK--------------------------GLSKAEAKRRADEWLERLGLG 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 143 ERAqgKYPVH-LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTH 221
Cdd:COG4152 121 DRA--NKKVEeLSKGNQQKVQLIAALLHDPELLILDEPFSGLDPVNVELLKDVIRELAAKGTTVIFSSHQMELVEELCDR 198
|
250
....*....|....*...
gi 757799860 222 VIFLHQGKIEEEGDPEQV 239
Cdd:COG4152 199 IVIINKGRKVLSGSVDEI 216
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
24-240 |
2.27e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 111.75 E-value: 2.27e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 24 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqLKVADKNQLRLLRTRLTMVFQ--HF 101
Cdd:PRK13643 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV---------SSTSKQKEIKPVRKKVGVVFQfpES 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 102 NLWSHmTVLENVMEAPiQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTS 181
Cdd:PRK13643 96 QLFEE-TVLKDVAFGP-QNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTA 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 182 ALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVF 240
Cdd:PRK13643 174 GLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
6-222 |
4.42e-29 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 109.91 E-value: 4.42e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGE----HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdGQLKV 81
Cdd:PRK11629 6 LQCDNLCKRYQEgsvqTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPM-------SKLSS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 82 ADKNQLRllRTRLTMVFQHFNLWSHMTVLENVmEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKyPVHLSGGQQQRV 161
Cdd:PRK11629 79 AAKAELR--NQKLGFIYQFHHLLPDFTALENV-AMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR-PSELSGGERQRV 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757799860 162 SIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHVSTHV 222
Cdd:PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELnRLQGTAFLVVTHDLQLAKRMSRQL 216
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
44-256 |
5.02e-29 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 112.13 E-value: 5.02e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIglvrdKDGQLKVadknQLRLLRTRLTMVFQHFNLWSHMTVLENVmeapiqVLGL 123
Cdd:TIGR02142 36 KTTLIRLIAGLTRPDEGEIVLNGRTL-----FDSRKGI----FLPPEKRRIGYVFQEARLFPHLSVRGNL------RYGM 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 124 SKQEARERAV---KYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE 200
Cdd:TIGR02142 101 KRARPSERRIsfeRVIELLGIGHLLG-RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHA 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 757799860 201 E-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSL 256
Cdd:TIGR02142 180 EfGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLAREDQGSL 236
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
17-242 |
5.30e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 110.56 E-value: 5.30e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGqniglvrdkdgqLKVADKNQLRLLRTRLTM 96
Cdd:PRK13633 22 EKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDG------------LDTSDEENLWDIRNKAGM 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 97 VFQH-FNLWSHMTVLENVMEAPiQVLGLSKQEARERAVKYLAKVGIDERAqgKYPVH-LSGGQQQRVSIARALAMEPEVL 174
Cdd:PRK13633 90 VFQNpDNQIVATIVEEDVAFGP-ENLGIPPEEIRERVDESLKKVGMYEYR--RHAPHlLSGGQKQRVAIAGILAMRPECI 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 175 LFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHvSTHVIFLHQGKIEEEGDPEQVFGN 242
Cdd:PRK13633 167 IFDEPTAMLDPSGRREVVNTIKELnKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-243 |
5.59e-29 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 110.08 E-value: 5.59e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSENKLNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNI-GLvrdkDGQl 79
Cdd:PRK11300 1 MSQPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIeGL----PGH- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 80 KVADKNqlrLLRTrltmvFQHFNLWSHMTVLENVMEAPIQVL------GL--------SKQEARERAVKYLAKVGIDE-- 143
Cdd:PRK11300 76 QIARMG---VVRT-----FQHVRLFREMTVIENLLVAQHQQLktglfsGLlktpafrrAESEALDRAATWLERVGLLEha 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 144 -RAQGkypvHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTH 221
Cdd:PRK11300 148 nRQAG----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEhNVTVLLIEHDMKLVMGISDR 223
|
250 260
....*....|....*....|..
gi 757799860 222 VIFLHQGKIEEEGDPEQVFGNP 243
Cdd:PRK11300 224 IYVVNQGTPLANGTPEEIRNNP 245
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
6-230 |
5.74e-29 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 108.91 E-value: 5.74e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQniglvrdkdgQLKVADKN 85
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK----------PLDIAARN 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRtrltmvfQHFNLWSHMTVLENVMEAPiQVLGLSKQEARERAVKYLAKVGIDERAQGKYPvHLSGGQQQRVSIAR 165
Cdd:cd03269 71 RIGYLP-------EERGLYPKMKVIDQLVYLA-QLKGLKKEEARRRIDEWLERLELSEYANKRVE-ELSKGNQQKVQFIA 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 757799860 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKI 230
Cdd:cd03269 142 AVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRA 206
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
12-243 |
6.57e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 110.28 E-value: 6.57e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 12 HKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvaDKNQLRLLR 91
Cdd:PRK13652 11 YSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPI-------------TKENIREVR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 92 TRLTMVFQHFN--LWShMTVLENVMEAPIQvLGLSKQEARERAVKYLAKVGIDErAQGKYPVHLSGGQQQRVSIARALAM 169
Cdd:PRK13652 78 KFVGLVFQNPDdqIFS-PTVEQDIAFGPIN-LGLDEETVAHRVSSALHMLGLEE-LRDRVPHHLSGGEKKRVAIAGVIAM 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 757799860 170 EPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNP 243
Cdd:PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
12-230 |
6.79e-29 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 108.50 E-value: 6.79e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 12 HKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLvrdkdgqlkvadknqlRLLR 91
Cdd:cd03226 7 FSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA----------------KERR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 92 TRLTMVFQH--FNLWSHmTVLENvmeapiqvLGLSKQEA---RERAVKYLAKVGIDErAQGKYPVHLSGGQQQRVSIARA 166
Cdd:cd03226 71 KSIGYVMQDvdYQLFTD-SVREE--------LLLGLKELdagNEQAETVLKDLDLYA-LKERHPLSLSGGQKQRLAIAAA 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757799860 167 LAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKI 230
Cdd:cd03226 141 LLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
25-235 |
8.24e-29 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 108.41 E-value: 8.24e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 25 SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIvvsgqniglvrdkdgqlKVADKNQLRLLRTR--LTMVFQHFN 102
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI-----------------KVNDQSHTGLAPYQrpVSMLFQENN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 103 LWSHMTVLENVMEAPIQVLGLSKQEaRERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSA 182
Cdd:TIGR01277 81 LFAHLTVRQNIGLGLHPGLKLNAEQ-QEKVVDAAQQVGIADYLD-RLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSA 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 757799860 183 LDPELVGEVLRIMQQLAEEGK-TMVVVTHEMGFARHVSTHVIFLHQGKIEEEGD 235
Cdd:TIGR01277 159 LDPLLREEMLALVKQLCSERQrTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2-254 |
9.43e-29 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 109.49 E-value: 9.43e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 2 SENKLNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSA---GSIVVSGQNIglvrdKD 76
Cdd:PRK14243 7 TETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDliPGFrveGKVTFHGKNL-----YA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 77 GQLKVADknqlrlLRTRLTMVFQHFNLWSHmTVLENVMEAPiQVLGLSKQ--EARERAVKYLA---KVGIDERAQGkypV 151
Cdd:PRK14243 82 PDVDPVE------VRRRIGMVFQKPNPFPK-SIYDNIAYGA-RINGYKGDmdELVERSLRQAAlwdEVKDKLKQSG---L 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEgKTMVVVTHEMGFARHVSTHVIFLH----- 226
Cdd:PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQAARVSDMTAFFNvelte 229
|
250 260 270
....*....|....*....|....*....|..
gi 757799860 227 ----QGKIEEEGDPEQVFGNPQSPRLQQFLKG 254
Cdd:PRK14243 230 gggrYGYLVEFDRTEKIFNSPQQQATRDYVSG 261
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
6-234 |
1.19e-28 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 108.05 E-value: 1.19e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGdVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKdgqlkvadkn 85
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK---------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 qlrlLRTRLTMVFQHFNLWSHMTVLENVmeAPIQVL-GLSKQEARERAVKYLAKVGIDERAqGKYPVHLSGGQQQRVSIA 164
Cdd:cd03264 70 ----LRRRIGYLPQEFGVYPNFTVREFL--DYIAWLkGIPSKEVKARVDEVLELVNLGDRA-KKKIGSLSGGMRRRVGIA 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEgKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEG 234
Cdd:cd03264 143 QALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGED-RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
6-250 |
1.30e-28 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 109.39 E-value: 1.30e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEH---------EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkd 76
Cdd:PRK10419 4 LNVSGLSHHYAHGglsgkhqhqTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLA------ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 77 gQLkvaDKNQLRLLRTRLTMVFQH----FNlwSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVH 152
Cdd:PRK10419 78 -KL---NRAQRKAFRRDIQMVFQDsisaVN--PRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKT-MVVVTHEMGFARHVSTHVIFLHQGKIE 231
Cdd:PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTaCLFITHDLRLVERFCQRVMVMDNGQIV 231
|
250 260
....*....|....*....|..
gi 757799860 232 EE---GDPeQVFGNPQSPRLQQ 250
Cdd:PRK10419 232 ETqpvGDK-LTFSSPAGRVLQN 252
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
17-241 |
1.91e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 109.48 E-value: 1.91e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgQLKVADKnQLRLLRTRLTM 96
Cdd:PRK13646 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITI--------THKTKDK-YIRPVRKRIGM 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 97 VFQhfnlWSHMTVLENVMEAPIQV----LGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPE 172
Cdd:PRK13646 90 VFQ----FPESQLFEDTVEREIIFgpknFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPD 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 173 VLLFDEPTSALDPELVGEVLRIMQQLA-EEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFG 241
Cdd:PRK13646 166 IIVLDEPTAGLDPQSKRQVMRLLKSLQtDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
6-230 |
2.01e-28 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 105.97 E-value: 2.01e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQniglvrdkdgqlkvadkn 85
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGK------------------ 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 qlrllrtrltmvfqhfnlwshmtvlenvmeapiQVLGLSKQEARERavkylakvGIderaqgkYPVH-LSGGQQQRVSIA 164
Cdd:cd03216 63 ---------------------------------EVSFASPRDARRA--------GI-------AMVYqLSVGERQMVEIA 94
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 757799860 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKI 230
Cdd:cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
21-228 |
2.16e-28 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 107.94 E-value: 2.16e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrDKDGQLKVadknqlrllrtrltMVFQH 100
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI----TEPGPDRM--------------VVFQN 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 101 FNLWSHMTVLENVMEAPIQVL-GLSKQEARERAVKYLAKVGIDErAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEP 179
Cdd:TIGR01184 63 YSLLPWLTVRENIALAVDRVLpDLSKSERRAIVEEHIALVGLTE-AADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEP 141
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 757799860 180 TSALDP----ELVGEVLRIMQqlaEEGKTMVVVTHEMGFARHVSTHVIFLHQG 228
Cdd:TIGR01184 142 FGALDAltrgNLQEELMQIWE---EHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-254 |
3.92e-28 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 108.26 E-value: 3.92e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL-EKPS----AGSIVVSGQNIGLVRDkdgqlk 80
Cdd:PRK14271 22 MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMnDKVSgyrySGDVLLGGRSIFNYRD------ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 81 vadknqLRLLRTRLTMVFQHFNLWShMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKY---PVHLSGGQ 157
Cdd:PRK14271 96 ------VLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLsdsPFRLSGGQ 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEgKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPE 237
Cdd:PRK14271 169 QQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTE 247
|
250
....*....|....*..
gi 757799860 238 QVFGNPQSPRLQQFLKG 254
Cdd:PRK14271 248 QLFSSPKHAETARYVAG 264
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
44-244 |
4.67e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 107.77 E-value: 4.67e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGqniglvrdkdgqlKVADKNQLRLLRTRLTMVFQH-FNLWSHMTV-------LENVME 115
Cdd:PRK13632 48 KSTISKILTGLLKPQSGEIKIDG-------------ITISKENLKEIRKKIGIIFQNpDNQFIGATVeddiafgLENKKV 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 116 APiqvlglskQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIM 195
Cdd:PRK13632 115 PP--------KKMKDIIDDLAKKVGMEDYLD-KEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 757799860 196 QQLAEEG-KTMVVVTHEMGFARHVSThVIFLHQGKIEEEGDPEQVFGNPQ 244
Cdd:PRK13632 186 VDLRKTRkKTLISITHDMDEAILADK-VIVFSEGKLIAQGKPKEILNNKE 234
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
8-240 |
5.40e-28 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 107.09 E-value: 5.40e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 8 VIDLHK---HYGEHEVLKGVSLQ-----------AN-AGdvisiigssgsgKSTFLRCINFLEKPSAG-SIVVSGQNIGL 71
Cdd:COG1119 3 LLELRNvtvRRGGKTILDDISWTvkpgehwailgPNgAG------------KSTLLSLITGDLPPTYGnDVRLFGERRGG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 72 VRdkdgqlkVADknqlrlLRTRLTMV--FQHFNLWSHMTVLENVMEAPIQVLGLSKQ---EARERAVKYLAKVGIDERAQ 146
Cdd:COG1119 71 ED-------VWE------LRKRIGLVspALQLRFPRDETVLDVVLSGFFDSIGLYREptdEQRERARELLELLGLAHLAD 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 147 GKYPvHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEG-KTMVVVTHemgfarHVS------ 219
Cdd:COG1119 138 RPFG-TLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGaPTLVLVTH------HVEeippgi 210
|
250 260
....*....|....*....|.
gi 757799860 220 THVIFLHQGKIEEEGDPEQVF 240
Cdd:COG1119 211 THVLLLKDGRVVAAGPKEEVL 231
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
6-249 |
5.64e-28 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 107.22 E-value: 5.64e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVsgqniglvRDKDGQ----LKV 81
Cdd:TIGR02323 4 LQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY--------IMRSGAelelYQL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLE--NVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ 159
Cdd:TIGR02323 76 SEAERRRLMRTEWGFVHQNPRDGLRMRVSAgaNIGERLMAIGARHYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQ 238
Cdd:TIGR02323 156 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDlGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQ 235
|
250
....*....|.
gi 757799860 239 VFGNPQSPRLQ 249
Cdd:TIGR02323 236 VLDDPQHPYTQ 246
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
6-238 |
1.15e-27 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 106.64 E-value: 1.15e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL---EKPSAGSIVVSGQNIglvrDKDGQLKva 82
Cdd:PRK09984 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLitgDKSAGSHIELLGRTV----QREGRLA-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 83 dkNQLRLLRTRLTMVFQHFNLWSHMTVLENVMeapIQVLGLS----------KQEARERAVKYLAKVGIDERAQGKYPVh 152
Cdd:PRK09984 79 --RDIRKSRANTGYIFQQFNLVNRLSVLENVL---IGALGSTpfwrtcfswfTREQKQRALQALTRVGMVHFAHQRVST- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE---LVGEVLRIMQQlaEEGKTMVVVTHEMGFARHVSTHVIFLHQGK 229
Cdd:PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPEsarIVMDTLRDINQ--NDGITVVVTLHQVDYALRYCERIVALRQGH 230
|
....*....
gi 757799860 230 IEEEGDPEQ 238
Cdd:PRK09984 231 VFYDGSSQQ 239
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
5-245 |
1.64e-27 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 108.01 E-value: 1.64e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 5 KLNVIDLHKHY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgQLKVAD 83
Cdd:PRK11650 3 GLKLQAVRKSYdGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVN-------ELEPAD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 84 KNqlrllrtrLTMVFQHFNLWSHMTVLENvMEAPIQVLGLSKQEARERaVKYLAKV-GIDERAQGKyPVHLSGGQQQRVS 162
Cdd:PRK11650 76 RD--------IAMVFQNYALYPHMSVREN-MAYGLKIRGMPKAEIEER-VAEAARIlELEPLLDRK-PRELSGGQRQRVA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 163 IARALAMEPEVLLFDEPTSALDPELVG----EVLRIMQQLaeeGKTMVVVTHE----MGFARhvstHVIFLHQGKIEEEG 234
Cdd:PRK11650 145 MGRAIVREPAVFLFDEPLSNLDAKLRVqmrlEIQRLHRRL---KTTSLYVTHDqveaMTLAD----RVVVMNGGVAEQIG 217
|
250
....*....|.
gi 757799860 235 DPEQVFGNPQS 245
Cdd:PRK11650 218 TPVEVYEKPAS 228
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
6-234 |
3.45e-27 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 104.37 E-value: 3.45e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGqnIGLVRDKdgqlkv 81
Cdd:cd03266 2 ITADALTKRFrdvkKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDG--FDVVKEP------ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 82 adknqlRLLRTRLTMVFQHFNLWSHMTVLENVmEAPIQVLGLSKQEARERaVKYLAKV-----GIDERAQGkypvhLSGG 156
Cdd:cd03266 74 ------AEARRRLGFVSDSTGLYDRLTARENL-EYFAGLYGLKGDELTAR-LEELADRlgmeeLLDRRVGG-----FSTG 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757799860 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEG 234
Cdd:cd03266 141 MRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
5-244 |
4.74e-27 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 104.34 E-value: 4.74e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 5 KLNVIDLHKHYGEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvadk 84
Cdd:COG1137 3 TLEAENLVKSYGKRTVVKDVSLEVNQGEIvgllgpngagKTTTFYMIVGLVKPDSGRIFLDGEDI--------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 85 nqlrllrTRLTM----------------VFQHfnlwshMTVLENVMeAPIQVLGLSKQEARERAVKYLAKVGIDERAQGK 148
Cdd:COG1137 68 -------THLPMhkrarlgigylpqeasIFRK------LTVEDNIL-AVLELRKLSKKEREERLEELLEEFGITHLRKSK 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 149 yPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGktM-VVVT-HemgfarHV-STHVI-- 223
Cdd:COG1137 134 -AYSLSGGERRRVEIARALATNPKFILLDEPFAGVDPIAVADIQKIIRHLKERG--IgVLITdH------NVrETLGIcd 204
|
250 260
....*....|....*....|....
gi 757799860 224 ---FLHQGKIEEEGDPEQVFGNPQ 244
Cdd:COG1137 205 rayIISEGKVLAEGTPEEILNNPL 228
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
15-250 |
4.76e-27 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 104.71 E-value: 4.76e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 15 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDgqlkvadknqlrlLRTRL 94
Cdd:PRK11231 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ-------------LARRL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 95 TMVFQHFNLWSHMTVLENVM--EAP-IQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAMEP 171
Cdd:PRK11231 79 ALLPQHHLTPEGITVRELVAygRSPwLSLWGRLSAEDNARVNQAMEQTRINHLAD-RRLTDLSGGQRQRAFLAMVLAQDT 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 172 EVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFgnpqSPRLQQ 250
Cdd:PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM----TPGLLR 232
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
6-243 |
6.12e-27 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 104.16 E-value: 6.12e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNI-GLVRDKdgqlkvadk 84
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDItKLPMHK--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 85 nqlrllRTRLTMVF--QHFNLWSHMTVLENVMeAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVS 162
Cdd:cd03218 72 ------RARLGIGYlpQEASIFRKLTVEENIL-AVLEIRGLSKKEREEKLEELLEEFHITHLRK-SKASSLSGGERRRVE 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGN 242
Cdd:cd03218 144 IARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223
|
.
gi 757799860 243 P 243
Cdd:cd03218 224 E 224
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
6-230 |
7.05e-27 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 103.35 E-value: 7.05e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvad 83
Cdd:cd03263 1 LQIRNLTKTYKKGTkpAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSI-------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVM-EAPIQvlGLSKQEARERAVKYLAKVGI----DERAQGkypvhLSGGQQ 158
Cdd:cd03263 67 RTDRKAARQSLGYCPQFDALFDELTVREHLRfYARLK--GLPKSEIKEEVELLLRVLGLtdkaNKRART-----LSGGMK 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757799860 159 QRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAeEGKTMVVVTHEMGFARHVSTHVIFLHQGKI 230
Cdd:cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-KGRSIILTTHSMDEAEALCDRIAIMSDGKL 210
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
6-234 |
8.87e-27 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 103.07 E-value: 8.87e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDGQLKVadkn 85
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGA---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 qlrllrtrltmVFQHFNLWSHMTVLENvMEAPIQVLGLSKQEAREravkYLAKVGIDERAQ---GKYpvhlSGGQQQRVS 162
Cdd:cd03268 77 -----------LIEAPGFYPNLTAREN-LRLLARLLGIRKKRIDE----VLDVVGLKDSAKkkvKGF----SLGMKQRLG 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757799860 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEG 234
Cdd:cd03268 137 IALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-239 |
1.73e-26 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 104.50 E-value: 1.73e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSENKLNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlk 80
Cdd:PRK13537 3 MSVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPV----------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 81 vadKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPiQVLGLSKQEARERAVKYLAKVGIDERAQGKYPvHLSGGQQQR 160
Cdd:PRK13537 72 ---PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFG-RYFGLSAAAARALVPPLLEFAKLENKADAKVG-ELSGGMKRR 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 161 VSIARALAMEPEVLLFDEPTSALDPE---LVGEVLRimqQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPE 237
Cdd:PRK13537 147 LTLARALVNDPDVLVLDEPTTGLDPQarhLMWERLR---SLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPH 223
|
..
gi 757799860 238 QV 239
Cdd:PRK13537 224 AL 225
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
10-250 |
2.48e-26 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 102.85 E-value: 2.48e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 10 DLHKHYGEHEVLKGVSLQ-----------AN-AGdvisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDg 77
Cdd:COG4604 6 NVSKRYGGKVVLDDVSLTipkggitaligPNgAG------------KSTLLSMISRLLPPDSGEVLVDGLDVATTPSRE- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 78 qlkvadknqlrlLRTRLTMVFQ--HFNlwSHMTVLENVMeapiqvLG--------LSK--QEARERAVKYLAKVGIdera 145
Cdd:COG4604 73 ------------LAKRLAILRQenHIN--SRLTVRELVA------FGrfpyskgrLTAedREIIDEAIAYLDLEDL---- 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 146 QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIF 224
Cdd:COG4604 129 ADRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADElGKTVVIVLHDINFASCYADHIVA 208
|
250 260
....*....|....*....|....*.
gi 757799860 225 LHQGKIEEEGDPEQVFgnpQSPRLQQ 250
Cdd:COG4604 209 MKDGRVVAQGTPEEII---TPEVLSD 231
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
6-253 |
3.73e-26 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 106.39 E-value: 3.73e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHY--GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDgqlkvad 83
Cdd:COG4987 334 LELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDD------- 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 84 knqlrlLRTRLTMVFQHFNLWsHMTVLENvmeapiqvLGLSKQEA-RERAVKYLAKVGIDERAQ----------GKYPVH 152
Cdd:COG4987 407 ------LRRRIAVVPQRPHLF-DTTLREN--------LRLARPDAtDEELWAALERVGLGDWLAalpdgldtwlGEGGRR 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAeEGKTMVVVTHEMGFARHVsTHVIFLHQGKIEE 232
Cdd:COG4987 472 LSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEAL-AGRTVLLITHRLAGLERM-DRILVLEDGRIVE 549
|
250 260
....*....|....*....|.
gi 757799860 233 EGDPEQVfgNPQSPRLQQFLK 253
Cdd:COG4987 550 QGTHEEL--LAQNGRYRQLYQ 568
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
6-253 |
4.02e-26 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 104.05 E-value: 4.02e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEV----LKGVSLQANAGDVISIIGSSGSGKS----TFLRCINFLEKPSAGSIVVSGQNIglvrdkdg 77
Cdd:PRK11022 4 LNVDKLSVHFGDESApfraVDRISYSVKQGEVVGIVGESGSGKSvsslAIMGLIDYPGRVMAEKLEFNGQDL-------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 78 qLKVADKNQLRLLRTRLTMVFQH--FNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ--GKYPVHL 153
Cdd:PRK11022 76 -QRISEKERRNLVGAEVAMIFQDpmTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASrlDVYPHQL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSTHVIFLHQGKIEE 232
Cdd:PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQkENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234
|
250 260
....*....|....*....|.
gi 757799860 233 EGDPEQVFGNPQSPRLQQFLK 253
Cdd:PRK11022 235 TGKAHDIFRAPRHPYTQALLR 255
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
6-239 |
4.57e-26 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 106.04 E-value: 4.57e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE--KPSAGSIVVsgqNIGL--------VRDK 75
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDqyEPTSGRIIY---HVALcekcgyveRPSK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 76 DGQ----------LKVAD-----KNQLRLLRTRLTMVFQH-FNLWSHMTVLENVMEApIQVLGLSKQEARERAVKYLAKV 139
Cdd:TIGR03269 78 VGEpcpvcggtlePEEVDfwnlsDKLRRRIRKRIAIMLQRtFALYGDDTVLDNVLEA-LEEIGYEGKEAVGRAVDLIEMV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 140 GIDERAqgkypVH----LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE---LVGEVLRimQQLAEEGKTMVVVTHEM 212
Cdd:TIGR03269 157 QLSHRI-----THiardLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQtakLVHNALE--EAVKASGISMVLTSHWP 229
|
250 260
....*....|....*....|....*..
gi 757799860 213 GFARHVSTHVIFLHQGKIEEEGDPEQV 239
Cdd:TIGR03269 230 EVIEDLSDKAIWLENGEIKEEGTPDEV 256
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
6-241 |
4.80e-26 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 106.04 E-value: 4.80e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVsgqniglvRDKDGQLK 80
Cdd:TIGR03269 280 IKVRNVSKRYisvdrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNV--------RVGDEWVD 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 81 VADKNQLrlLRTRLT----MVFQHFNLWSHMTVLENVMEApIQvLGLSKQEARERAVKYLAKVGIDERAQ----GKYPVH 152
Cdd:TIGR03269 352 MTKPGPD--GRGRAKryigILHQEYDLYPHRTVLDNLTEA-IG-LELPDELARMKAVITLKMVGFDEEKAeeilDKYPDE 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIE 231
Cdd:TIGR03269 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHsILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507
|
250
....*....|
gi 757799860 232 EEGDPEQVFG 241
Cdd:TIGR03269 508 KIGDPEEIVE 517
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-252 |
5.25e-26 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 102.42 E-value: 5.25e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL-----EKPSAGSIVVSGQNIglvrdkdgqlk 80
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMnelesEVRVEGRVEFFNQNI----------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 81 VADKNQLRLLRTRLTMVFQHFNLWShMTVLENVMEApIQVLGLSKQEARERAVKYLAKVGiDERAQGKYPVH-----LSG 155
Cdd:PRK14258 77 YERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYG-VKIVGWRPKLEIDDIVESALKDA-DLWDEIKHKIHksaldLSG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGK-TMVVVTHEMGFARHVSTHVIFLHQ-----GK 229
Cdd:PRK14258 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSElTMVIVSHNLHQVSRLSDFTAFFKGnenriGQ 233
|
250 260
....*....|....*....|...
gi 757799860 230 IEEEGDPEQVFGNPQSPRLQQFL 252
Cdd:PRK14258 234 LVEFGLTKKIFNSPHDSRTREYV 256
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
6-228 |
1.24e-25 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 101.31 E-value: 1.24e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQniglvrdkdgqlKVADKN 85
Cdd:PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGK------------PVEGPG 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRllrtrlTMVFQHFNLWSHMTVLENVmEAPIQVLGLSKQEARERAVKYLAKVGIDErAQGKYPVHLSGGQQQRVSIAR 165
Cdd:PRK11248 70 AER------GVVFQNEGLLPWRNVQDNV-AFGLQLAGVEKMQRLEIAHQMLKKVGLEG-AEKRYIWQLSGGQRQRVGIAR 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 757799860 166 ALAMEPEVLLFDEPTSALDP---ELVGEVLriMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQG 228
Cdd:PRK11248 142 ALAANPQLLLLDEPFGALDAftrEQMQTLL--LKLWQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
13-239 |
1.27e-25 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 100.93 E-value: 1.27e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 13 KHYGEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCINFLEKPSAGSIVVSGqniglvrdkdgqlKVADknqlrLLRt 92
Cdd:COG1134 34 TRREEFWALKDVSFEVERGESvgiigrngagKSTLLKLIAGILEPTSGRVEVNG-------------RVSA-----LLE- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 93 rLTMVFQhfnlwSHMTVLENV-MEApiQVLGLSKQEARER--AVKYLAKVG--IDEraqgkyPV-HLSGGQQQRVSIARA 166
Cdd:COG1134 95 -LGAGFH-----PELTGRENIyLNG--RLLGLSRKEIDEKfdEIVEFAELGdfIDQ------PVkTYSSGMRARLAFAVA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 757799860 167 LAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQV 239
Cdd:COG1134 161 TAVDPDILLVDEVLAVGDAAFQKKCLARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEV 233
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
2-254 |
1.49e-25 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 101.38 E-value: 1.49e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 2 SENKLNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlKV 81
Cdd:PRK11831 4 VANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENI----------PA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKyPVHLSGGQQQRV 161
Cdd:PRK11831 74 MSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM-PSELSGGMARRA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 162 SIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVF 240
Cdd:PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSAlGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232
|
250
....*....|....
gi 757799860 241 GNPqSPRLQQFLKG 254
Cdd:PRK11831 233 ANP-DPRVRQFLDG 245
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-256 |
1.77e-25 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 100.89 E-value: 1.77e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 2 SENKLNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDkdgqlkV 81
Cdd:PRK14246 7 AEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKD------I 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 82 ADKNQLRLlRTRLTMVFQHFNLWSHMTVLENVmEAPIQVLGLS-KQEARERAVKYLAKVGIDERAQGKY---PVHLSGGQ 157
Cdd:PRK14246 81 FQIDAIKL-RKEVGMVFQQPNPFPHLSIYDNI-AYPLKSHGIKeKREIKKIVEECLRKVGLWKEVYDRLnspASQLSGGQ 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEgKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPE 237
Cdd:PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE-IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSN 237
|
250
....*....|....*....
gi 757799860 238 QVFGNPQSPRLQQFLKGSL 256
Cdd:PRK14246 238 EIFTSPKNELTEKYVIGRI 256
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
13-244 |
5.92e-25 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 101.64 E-value: 5.92e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 13 KHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvadkNQLRLLRT 92
Cdd:PRK11000 11 KAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM---------------NDVPPAER 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 93 RLTMVFQHFNLWSHMTVLENvMEAPIQVLGLSKQEARERaVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPE 172
Cdd:PRK11000 76 GVGMVFQSYALYPHLSVAEN-MSFGLKLAGAKKEEINQR-VNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 757799860 173 VLLFDEPTSALDPEL----VGEVLRIMQQLaeeGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQ 244
Cdd:PRK11000 154 VFLLDEPLSNLDAALrvqmRIEISRLHKRL---GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
70-252 |
6.86e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 100.08 E-value: 6.86e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 70 GLVRDKDGQLKVADK---------NQLRLLRTRLTMVFQ--HFNLWSHmTVLENVMEAPIQvLGLSKQEARERAVKYLAK 138
Cdd:PRK13645 59 GLIISETGQTIVGDYaipanlkkiKEVKRLRKEIGLVFQfpEYQLFQE-TIEKDIAFGPVN-LGENKQEAYKKVPELLKL 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 139 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARH 217
Cdd:PRK13645 137 VQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLnKEYKKRIIMVTHNMDQVLR 216
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 757799860 218 VSTHVIFLHQGKIEEEGDPEQVFGNPQ--------SPRLQQFL 252
Cdd:PRK13645 217 IADEVIVMHEGKVISIGSPFEIFSNQElltkieidPPKLYQLM 259
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
6-249 |
7.58e-25 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 99.23 E-value: 7.58e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIvvsgqnigLVRDKDGQLK----V 81
Cdd:PRK11701 7 LSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV--------HYRMRDGQLRdlyaL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLE--NVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ 159
Cdd:PRK11701 79 SEAERRRLLRTEWGFVHQHPRDGLRMQVSAggNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQ 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQ 238
Cdd:PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLvRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQ 238
|
250
....*....|.
gi 757799860 239 VFGNPQSPRLQ 249
Cdd:PRK11701 239 VLDDPQHPYTQ 249
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
44-252 |
9.12e-25 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 102.63 E-value: 9.12e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIGLVRDkdgqlkvadkNQLRLLRTRLTMVFQ--HFNLWSHMTVLENVMEaPIQVL 121
Cdd:PRK10261 363 KSTTGRALLRLVESQGGEIIFNGQRIDTLSP----------GKLQALRRDIQFIFQdpYASLDPRQTVGDSIME-PLRVH 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 122 GL-SKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE 200
Cdd:PRK10261 432 GLlPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR 511
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 757799860 201 E-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFL 252
Cdd:PRK10261 512 DfGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLM 564
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
85-246 |
1.06e-24 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 100.18 E-value: 1.06e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 85 NQLRLLRT-RLTMVFQH--FNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDE--RAQGKYPVHLSGGQQQ 159
Cdd:PRK09473 89 KELNKLRAeQISMIFQDpmTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEarKRMKMYPHEFSGGMRQ 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKT-MVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQ 238
Cdd:PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTaIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARD 248
|
....*...
gi 757799860 239 VFGNPQSP 246
Cdd:PRK09473 249 VFYQPSHP 256
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
10-238 |
2.63e-24 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 97.30 E-value: 2.63e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 10 DLHKHYGEH-EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVrdkdgqlkvadknQLR 88
Cdd:cd03253 5 NVTFAYDPGrPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREV-------------TLD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 89 LLRTRLTMVFQHFNLWsHMTVLENVMEAPIQVLGLSKQEARERAV----------KYLAKVGidERAqgkypVHLSGGQQ 158
Cdd:cd03253 72 SLRRAIGVVPQDTVLF-NDTIGYNIRYGRPDATDEEVIEAAKAAQihdkimrfpdGYDTIVG--ERG-----LKLSGGEK 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 159 QRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAeEGKTMVVVTHEmgfarhVST-----HVIFLHQGKIEEE 233
Cdd:cd03253 144 QRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIAHR------LSTivnadKIIVLKDGRIVER 216
|
....*
gi 757799860 234 GDPEQ 238
Cdd:cd03253 217 GTHEE 221
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
15-216 |
3.68e-24 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 95.76 E-value: 3.68e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 15 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVS-GQNIGLVRDkdgQLKVADKNQLRLLRTr 93
Cdd:NF040873 2 YGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAgGARVAYVPQ---RSEVPDSLPLTVRDL- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 94 LTM-VFQHFNLWSHMTvlenvmeapiqvlglskQEARERAVKYLAKVGIDERAqgKYPVH-LSGGQQQRVSIARALAMEP 171
Cdd:NF040873 78 VAMgRWARRGLWRRLT-----------------RDDRAAVDDALERVGLADLA--GRQLGeLSGGQRQRALLAQGLAQEA 138
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 757799860 172 EVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFAR 216
Cdd:NF040873 139 DLLLLDEPTTGLDAESRERIIALLAEEHARGATVVVVTHDLELVR 183
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
7-241 |
4.43e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 97.49 E-value: 4.43e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 7 NVIDLHK---HYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQniglvrdkdgqlK 80
Cdd:PRK13650 3 NIIEVKNltfKYKedqEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD------------L 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 81 VADKNQLRLlRTRLTMVFQH-FNLWSHMTVLENVMEApIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQ 159
Cdd:PRK13650 71 LTEENVWDI-RHKIGMVFQNpDNQFVGATVEDDVAFG-LENKGIPHEEMKERVNEALELVGMQDFKE-REPARLSGGQKQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARhVSTHVIFLHQGKIEEEGDPEQ 238
Cdd:PRK13650 148 RVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDyQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRE 226
|
...
gi 757799860 239 VFG 241
Cdd:PRK13650 227 LFS 229
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
2-233 |
7.29e-24 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 96.00 E-value: 7.29e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 2 SENKLNVIDLHKHYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNiglvrdkdg 77
Cdd:PRK10584 3 AENIVEVHHLKKSVGQGEhelsILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQP--------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 78 qLKVADKNQLRLLRTR-LTMVFQHFNLWSHMTVLENVmEAPIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGG 156
Cdd:PRK10584 74 -LHQMDEEARAKLRAKhVGFVFQSFMLIPTLNALENV-ELPALLRGESSRQSRNGAKALLEQLGLGKRLD-HLPAQLSGG 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757799860 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHvIFLHQGKIEEE 233
Cdd:PRK10584 151 EQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREhGTTLILVTHDLQLAARCDRR-LRLVNGQLQEE 227
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
46-252 |
3.25e-23 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 98.39 E-value: 3.25e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 46 TFLRCINFLEKpsAGSIVVSGQNigLVRDKDGQ-LKVADKNQLRLLRTR---LTMVFQH--FNLWSHMTVLENVMEAPIQ 119
Cdd:PRK10261 58 TALALMRLLEQ--AGGLVQCDKM--LLRRRSRQvIELSEQSAAQMRHVRgadMAMIFQEpmTSLNPVFTVGEQIAESIRL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 120 VLGLSKQEARERAVKYLAKVGIDERAQ--GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQ 197
Cdd:PRK10261 134 HQGASREEAMVEAKRMLDQVRIPEAQTilSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKV 213
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 757799860 198 LAEEGKTMVV-VTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFL 252
Cdd:PRK10261 214 LQKEMSMGVIfITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALL 269
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
8-230 |
3.97e-23 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 97.83 E-value: 3.97e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 8 VIDLHKHYGEHEVLKGVSLQ-----------AN-AGdvisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQniglvrdk 75
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSinpgdriglvgRNgAG------------KSTLLKILAGELEPDSGEVSIPKG-------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 76 dgqlkvadknqlrllrTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQ----------------------------- 126
Cdd:COG0488 61 ----------------LRIGYLPQEPPLDDDLTVLDTVLDGDAELRALEAEleeleaklaepdedlerlaelqeefealg 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 127 --EARERAVKYLAKVGIDERAQGKyPV-HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVgEVLRimQQLAEEGK 203
Cdd:COG0488 125 gwEAEARAEEILSGLGFPEEDLDR-PVsELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLESI-EWLE--EFLKNYPG 200
|
250 260
....*....|....*....|....*..
gi 757799860 204 TMVVVTHEMGFARHVSTHVIFLHQGKI 230
Cdd:COG0488 201 TVLVVSHDRYFLDRVATRILELDRGKL 227
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
6-239 |
3.97e-23 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 96.83 E-value: 3.97e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDGQLKVADKN 85
Cdd:PRK09536 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QlrllRTRLTMVFQ-----------HFNLWSHMTvlenvmeapiqvlglskqEARERAV-KYLAKVGIDERAQgkYPV-H 152
Cdd:PRK09536 84 Q----DTSLSFEFDvrqvvemgrtpHRSRFDTWT------------------ETDRAAVeRAMERTGVAQFAD--RPVtS 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEE 232
Cdd:PRK09536 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA 219
|
....*..
gi 757799860 233 EGDPEQV 239
Cdd:PRK09536 220 AGPPADV 226
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
17-252 |
4.26e-23 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 97.47 E-value: 4.26e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 17 EHEVLKGVSLQANAGDVISIIGSSGSGKS-TFLRCINFLEKPSA----GSIVVSGQNiglvrdkdgqLKVADKNQLRLLR 91
Cdd:PRK15134 21 VRTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSPPVvypsGDIRFHGES----------LLHASEQTLRGVR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 92 -TRLTMVFQHfnLWSHMTVLENVMEAPIQVL----GLSKQEARERAVKYLAKVGIDERAQ--GKYPVHLSGGQQQRVSIA 164
Cdd:PRK15134 91 gNKIAMIFQE--PMVSLNPLHTLEKQLYEVLslhrGMRREAARGEILNCLDRVGIRQAAKrlTDYPHQLSGGERQRVMIA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNP 243
Cdd:PRK15134 169 MALLTRPELLIADEPTTALDVSVQAQILQLLRELQQElNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAP 248
|
....*....
gi 757799860 244 QSPRLQQFL 252
Cdd:PRK15134 249 THPYTQKLL 257
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
16-240 |
1.26e-22 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 92.67 E-value: 1.26e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdKDGQLKVadknqlrlLRTRLT 95
Cdd:cd03254 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDI-----RDISRKS--------LRSMIG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 96 MVFQHFNLWSHmTVLENVMeapiqvlgLSKQEARERAVKYLAK-VGIDE-------------RAQGKYpvhLSGGQQQRV 161
Cdd:cd03254 81 VVLQDTFLFSG-TIMENIR--------LGRPNATDEEVIEAAKeAGAHDfimklpngydtvlGENGGN---LSQGERQLL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 162 SIARALAMEPEVLLFDEPTSALDPE---LVGE-VLRIMqqlaeEGKTMVVVTHEMGFARHvSTHVIFLHQGKIEEEGDPE 237
Cdd:cd03254 149 AIARAMLRDPKILILDEATSNIDTEtekLIQEaLEKLM-----KGRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHD 222
|
...
gi 757799860 238 QVF 240
Cdd:cd03254 223 ELL 225
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
17-238 |
1.47e-22 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 92.60 E-value: 1.47e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTflrCINFLEK---PSAGSIVVSGQNIglvRDkdgqlkvadkNQLRLLRTR 93
Cdd:cd03249 15 DVPILKGLSLTIPPGKTVALVGSSGCGKST---VVSLLERfydPTSGEILLDGVDI---RD----------LNLRWLRSQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 94 LTMVFQHFNLWShMTVLENVmeapiqVLGL--SKQEARERAVKyLAKV---------GIDERAqGKYPVHLSGGQQQRVS 162
Cdd:cd03249 79 IGLVSQEPVLFD-GTIAENI------RYGKpdATDEEVEEAAK-KANIhdfimslpdGYDTLV-GERGSQLSGGQKQRIA 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 757799860 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAeEGKTMVVVTHEMGFARHvSTHVIFLHQGKIEEEGDPEQ 238
Cdd:cd03249 150 IARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHDE 223
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
17-230 |
1.48e-22 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 92.27 E-value: 1.48e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgQLKVADknqlrlLRTRLTM 96
Cdd:cd03245 16 EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR-------QLDPAD------LRRNIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 97 VFQHFNLWSHmTVLENVMeapiqvlgLSKQEARERAVKYLAKVG----------------IDERAQGkypvhLSGGQQQR 160
Cdd:cd03245 83 VPQDVTLFYG-TLRDNIT--------LGAPLADDERILRAAELAgvtdfvnkhpngldlqIGERGRG-----LSGGQRQA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAeEGKTMVVVTHEMGFARHVStHVIFLHQGKI 230
Cdd:cd03245 149 VALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLLDLVD-RIIVMDSGRI 216
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
6-240 |
1.88e-22 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 93.15 E-value: 1.88e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLvrdkdgqlkvaDKN 85
Cdd:PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDY-----------SKR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVgiDERAQGKYPVH-LSGGQQQRVSIA 164
Cdd:PRK13638 71 GLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLV--DAQHFRHQPIQcLSHGQKKRVAIA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 757799860 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVF 240
Cdd:PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
|
|
| type_I_sec_LssB |
TIGR03375 |
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some ... |
17-247 |
1.88e-22 |
|
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274550 [Multi-domain] Cd Length: 694 Bit Score: 96.09 E-value: 1.88e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgQLKVADknqlrlLRTRLTM 96
Cdd:TIGR03375 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIR-------QIDPAD------LRRNIGY 543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 97 VFQHFNLWsHMTVLEN-VMEAPiqvlGLSKQEAReRAVKyLAKVG-------------IDERAQGkypvhLSGGQQQRVS 162
Cdd:TIGR03375 544 VPQDPRLF-YGTLRDNiALGAP----YADDEEIL-RAAE-LAGVTefvrrhpdgldmqIGERGRS-----LSGGQRQAVA 611
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAeEGKTMVVVTHEMGFARHVsTHVIFLHQGKIEEEGDPEQVFGN 242
Cdd:TIGR03375 612 LARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLLDLV-DRIIVMDNGRIVADGPKDQVLEA 689
|
....*
gi 757799860 243 PQSPR 247
Cdd:TIGR03375 690 LRKGR 694
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
14-238 |
2.87e-22 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 91.52 E-value: 2.87e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 14 HYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvRDKdgqlkvadknQLRLLR 91
Cdd:cd03251 9 RYPGDGppVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV---RDY----------TLASLR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 92 TRLTMVFQHFNLWSHmTVLENVMEApiqVLGLSKQEARERAVKYLAKVGIDERAQGkYP-------VHLSGGQQQRVSIA 164
Cdd:cd03251 76 RQIGLVSQDVFLFND-TVAENIAYG---RPGATREEVEEAARAANAHEFIMELPEG-YDtvigergVKLSGGQRQRIAIA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757799860 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAeEGKTMVVVTHEMGFARHvSTHVIFLHQGKIEEEGDPEQ 238
Cdd:cd03251 151 RALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEE 222
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
44-240 |
2.96e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 92.51 E-value: 2.96e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvaDKNQLRLLRTRLTMVFQH-FNLWSHMTV-------LENVMe 115
Cdd:PRK13648 48 KSTIAKLMIGIEKVKSGEIFYNNQAI-------------TDDNFEKLRKHIGIVFQNpDNQFVGSIVkydvafgLENHA- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 116 apiqvlgLSKQEARERAVKYLAKVGIDERAQGKyPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIM 195
Cdd:PRK13648 114 -------VPYDEMHRRVSEALKQVDMLERADYE-PNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLV 185
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 757799860 196 QQLAEEGK-TMVVVTHEMGFARHvSTHVIFLHQGKIEEEGDPEQVF 240
Cdd:PRK13648 186 RKVKSEHNiTIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIF 230
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
44-248 |
1.24e-21 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 90.03 E-value: 1.24e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQniglvrdkdgqlkvaDKNQLRLLRTRLTMVFQHFNLWSHMTVLENVmeapiqVLGL 123
Cdd:PRK10771 38 KSTLLNLIAGFLTPASGSLTLNGQ---------------DHTTTPPSRRPVSMLFQENNLFSHLTVAQNI------GLGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 124 S-----KQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL 198
Cdd:PRK10771 97 NpglklNAAQREKLHAIARQMGIEDLLA-RLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQV 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 757799860 199 AEEGK-TMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQ-VFGNPQSPRL 248
Cdd:PRK10771 176 CQERQlTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDElLSGKASASAL 227
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
107-239 |
1.37e-21 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 93.16 E-value: 1.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 107 MTVLENVMEAPIQVLG----LSKQEARERAVKYLAKVGIdeRAQGKY-PV-HLSGGQQQRVSIARALAMEPEVLLFDEPT 180
Cdd:COG1129 345 LSIRENITLASLDRLSrgglLDRRRERALAEEYIKRLRI--KTPSPEqPVgNLSGGNQQKVVLAKWLATDPKVLILDEPT 422
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757799860 181 SALDpelVG---EVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQV 239
Cdd:COG1129 423 RGID---VGakaEIYRLIRELAAEGKAVIVISSELPELLGLSDRILVMREGRIVGELDREEA 481
|
|
| NHLM_micro_ABC2 |
TIGR03797 |
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family ... |
20-238 |
1.42e-21 |
|
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274789 [Multi-domain] Cd Length: 686 Bit Score: 93.48 E-value: 1.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvaDKNQLRLLRTRLTMVFQ 99
Cdd:TIGR03797 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDL-------------AGLDVQAVRRQLGVVLQ 534
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 100 HFNLWSHmTVLENVMEAPIqvlgLSKQEARERAvkYLAKVGIDERAQ--GKYPV------HLSGGQQQRVSIARALAMEP 171
Cdd:TIGR03797 535 NGRLMSG-SIFENIAGGAP----LTLDEAWEAA--RMAGLAEDIRAMpmGMHTVisegggTLSGGQRQRLLIARALVRKP 607
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757799860 172 EVLLFDEPTSALDPELVGEVlriMQQLAEEGKTMVVVTHEMGFARHvsTHVIF-LHQGKIEEEGDPEQ 238
Cdd:TIGR03797 608 RILLFDEATSALDNRTQAIV---SESLERLKVTRIVIAHRLSTIRN--ADRIYvLDAGRVVQQGTYDE 670
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
16-210 |
1.74e-21 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 93.12 E-value: 1.74e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgQLKVADknqlrlLRTRLT 95
Cdd:TIGR02857 333 GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLA-------DADADS------WRDQIA 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 96 MVFQHFNLWSHmTVLENVmeapiqvlGLSKQEARERAVK-YLAKVGIDERAQ----------GKYPVHLSGGQQQRVSIA 164
Cdd:TIGR02857 400 WVPQHPFLFAG-TIAENI--------RLARPDASDAEIReALERAGLDEFVAalpqgldtpiGEGGAGLSGGQAQRLALA 470
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 757799860 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAeEGKTMVVVTH 210
Cdd:TIGR02857 471 RAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALA-QGRTVLLVTH 515
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
44-244 |
9.28e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 88.70 E-value: 9.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGS---IVVSGQNIGlvrdkdgQLKVADknqlrlLRTRLTMVFQH-FNLWSHMTVLENVMEApIQ 119
Cdd:PRK13640 46 KSTISKLINGLLLPDDNPnskITVDGITLT-------AKTVWD------IREKVGIVFQNpDNQFVGATVGDDVAFG-LE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 120 VLGLSKQEARERAVKYLAKVGIDERAQGKyPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLA 199
Cdd:PRK13640 112 NRAVPRPEMIKIVRDVLADVGMLDYIDSE-PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLK 190
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 757799860 200 EE-GKTMVVVTHEMGFARHvSTHVIFLHQGKIEEEGDPEQVFGNPQ 244
Cdd:PRK13640 191 KKnNLTVISITHDIDEANM-ADQVLVLDDGKLLAQGSPVEIFSKVE 235
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
17-234 |
9.81e-21 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 87.54 E-value: 9.81e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVrdkdgqlkvaDKNQLRllrTRLTM 96
Cdd:cd03252 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALA----------DPAWLR---RQVGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 97 VFQHfNLWSHMTVLENV--------MEAPIQVLGLSKQEA--RERAVKYLAKVGidERAQGkypvhLSGGQQQRVSIARA 166
Cdd:cd03252 81 VLQE-NVLFNRSIRDNIaladpgmsMERVIEAAKLAGAHDfiSELPEGYDTIVG--EQGAG-----LSGGQRQRIAIARA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757799860 167 LAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAeEGKTMVVVTHEMGFARHvSTHVIFLHQGKIEEEG 234
Cdd:cd03252 153 LIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQG 218
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-237 |
3.50e-20 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 87.96 E-value: 3.50e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSENKLNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVsgqniglvrdkdgqLK 80
Cdd:PRK13536 37 MSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV--------------LG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPiQVLGLSKQEArERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160
Cdd:PRK13536 103 VPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFG-RYFGMSTREI-EAVIPSLLEFARLESKADARVSDLSGGMKRR 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 161 VSIARALAMEPEVLLFDEPTSALDP---ELVGEVLRimqQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPE 237
Cdd:PRK13536 181 LTLARALINDPQLLILDEPTTGLDPharHLIWERLR---SLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPH 257
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
6-235 |
4.27e-20 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 88.97 E-value: 4.27e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQ-----------AN-AGdvisiigssgsgKSTFLRCINFLEKPSAGSIVVsGQNiglvr 73
Cdd:COG0488 316 LELEGLSKSYGDKTLLDDLSLRidrgdrigligPNgAG------------KSTLLKLLAGELEPDSGTVKL-GET----- 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 74 dkdgqLKVA--DKNQlrllrtrltmvfQHFNLwsHMTVLENVME-APiqvlGLSKQEAReravKYLAKVGIDERAQGKyP 150
Cdd:COG0488 378 -----VKIGyfDQHQ------------EELDP--DKTVLDELRDgAP----GGTEQEVR----GYLGRFLFSGDDAFK-P 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 151 VH-LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVgEVLriMQQLAE-EGkTMVVVTHEMGFARHVSTHVIFLHQG 228
Cdd:COG0488 430 VGvLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIETL-EAL--EEALDDfPG-TVLLVSHDRYFLDRVATRILEFEDG 505
|
....*...
gi 757799860 229 KIEE-EGD 235
Cdd:COG0488 506 GVREyPGG 513
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
93-210 |
5.33e-20 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 85.23 E-value: 5.33e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 93 RLTMVFQHFNLWSHMTVLENVMEApiqvL--GLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAME 170
Cdd:COG4136 77 RIGILFQDDLLFPHLSVGENLAFA----LppTIGRAQRRARVEQALEEAGLAGFAD-RDPATLSGGQRARVALLRALLAE 151
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 757799860 171 PEVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTH 210
Cdd:COG4136 152 PRALLLDEPFSKLDAALRAQFREfVFEQIRQRGIPALLVTH 192
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
97-244 |
1.25e-19 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 86.47 E-value: 1.25e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 97 VFQHFNLWSHMTVLENVMeapiqvLGLSKQEARE--RAVKYLakvGIdERAQGKYPVHLSGGQQQRVSIARALAMEPEVL 174
Cdd:PRK11144 81 VFQDARLFPHYKVRGNLR------YGMAKSMVAQfdKIVALL---GI-EPLLDRYPGSLSGGEKQRVAIGRALLTAPELL 150
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 757799860 175 LFDEPTSALDPELVGEVLRIMQQLAEEGKT-MVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQ 244
Cdd:PRK11144 151 LMDEPLASLDLPRKRELLPYLERLAREINIpILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
15-234 |
1.31e-19 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 84.12 E-value: 1.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 15 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRdkdgqlkvadknqlrllrtrL 94
Cdd:cd03220 32 VGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG--------------------L 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 95 TMVFQhfnlwSHMTVLENV-MEAPIqvLGLSKQEARERavkylakvgIDERAQ----GKY---PV-HLSGGQQQRVSIAR 165
Cdd:cd03220 92 GGGFN-----PELTGRENIyLNGRL--LGLSRKEIDEK---------IDEIIEfselGDFidlPVkTYSSGMKARLAFAI 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEG 234
Cdd:cd03220 156 ATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
150-230 |
2.54e-19 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 82.48 E-value: 2.54e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGK 229
Cdd:cd03215 102 SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGR 181
|
.
gi 757799860 230 I 230
Cdd:cd03215 182 I 182
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
44-210 |
3.73e-19 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 82.21 E-value: 3.73e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCInflekpsagsivvSGQNIGLvRDKdGQLKVADKNQ-LRLLRTRLTMVFQHFNLWSHMTVLENVMeapiqvlg 122
Cdd:cd03213 48 KSTLLNAL-------------AGRRTGL-GVS-GEVLINGRPLdKRSFRKIIGYVPQDDILHPTLTVRETLM-------- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 123 lskqeareravkYLAKVgideraQGkypvhLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEG 202
Cdd:cd03213 105 ------------FAAKL------RG-----LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTG 161
|
....*...
gi 757799860 203 KTMVVVTH 210
Cdd:cd03213 162 RTIICSIH 169
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
44-244 |
5.21e-19 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 83.69 E-value: 5.21e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQniglvrdkdgQLKVADknqLRLLRTRLTMVFQH-FNLWSHMTVLENVMEAPIQV-L 121
Cdd:PRK15112 52 KSTLAKMLAGMIEPTSGELLIDDH----------PLHFGD---YSYRSQRIRMIFQDpSTSLNPRQRISQILDFPLRLnT 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 122 GLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE 201
Cdd:PRK15112 119 DLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK 198
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 757799860 202 -GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQ 244
Cdd:PRK15112 199 qGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPL 242
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
15-239 |
5.41e-19 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 83.50 E-value: 5.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 15 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgqlKVADKNQLRllrtRL 94
Cdd:PRK10253 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQ---------HYASKEVAR----RI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 95 TMVFQHFNLWSHMTVLENVMEA--PIQVLGLSKQEARERAV-KYLAKVGIDERAQGKYPVhLSGGQQQRVSIARALAMEP 171
Cdd:PRK10253 84 GLLAQNATTPGDITVQELVARGryPHQPLFTRWRKEDEEAVtKAMQATGITHLADQSVDT-LSGGQRQRAWIAMVLAQET 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 172 EVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQV 239
Cdd:PRK10253 163 AIMLLDEPTTWLDISHQIDLLELLSELnREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
6-210 |
7.69e-19 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 85.49 E-value: 7.69e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDgqlkvadk 84
Cdd:TIGR02868 335 LELRDLSAGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDE-------- 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 85 nqlrlLRTRLTMVFQHFNLWsHMTVLENVMeapiqvlgLSKQEARERAV-KYLAKVG----IDERAQG-KYPVH-----L 153
Cdd:TIGR02868 407 -----VRRRVSVCAQDAHLF-DTTVRENLR--------LARPDATDEELwAALERVGladwLRALPDGlDTVLGeggarL 472
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 757799860 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQlAEEGKTMVVVTH 210
Cdd:TIGR02868 473 SGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-ALSGRTVVLITH 528
|
|
| type_I_sec_HlyB |
TIGR01846 |
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in ... |
19-234 |
1.14e-18 |
|
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273831 [Multi-domain] Cd Length: 694 Bit Score: 84.79 E-value: 1.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLvrdkdgqlkvADKNQLRllrTRLTMVF 98
Cdd:TIGR01846 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAI----------ADPAWLR---RQMGVVL 537
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 99 QHFNLWSHmTVLENVmeapiqvlGLSKQEARERAVKYLAKVG-----IDERAQG------KYPVHLSGGQQQRVSIARAL 167
Cdd:TIGR01846 538 QENVLFSR-SIRDNI--------ALCNPGAPFEHVIHAAKLAgahdfISELPQGyntevgEKGANLSGGQRQRIAIARAL 608
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 168 AMEPEVLLFDEPTSALDPElvGEVLrIMQQLAE--EGKTMVVVTHEMGFARHVStHVIFLHQGKIEEEG 234
Cdd:TIGR01846 609 VGNPRILIFDEATSALDYE--SEAL-IMRNMREicRGRTVIIIAHRLSTVRACD-RIIVLEKGQIAESG 673
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
21-212 |
1.63e-18 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 84.19 E-value: 1.63e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQniglvrdkdgqlKVADKNQLRLLRTRLTMVFQH 100
Cdd:PRK11288 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQ------------EMRFASTTAALAAGVAIIYQE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 101 FNLWSHMTVLENVMeapiqvLG--------LSKQEARERAVKYLAKVG--IDERAQGKYpvhLSGGQQQRVSIARALAME 170
Cdd:PRK11288 88 LHLVPEMTVAENLY------LGqlphkggiVNRRLLNYEAREQLEHLGvdIDPDTPLKY---LSIGQRQMVEIAKALARN 158
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 757799860 171 PEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212
Cdd:PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM 200
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
6-248 |
3.53e-18 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 80.71 E-value: 3.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLvrdkdgqLKVADKn 85
Cdd:PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISL-------LPLHAR- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 qlrlLRTRLTMVFQHFNLWSHMTVLENVMeAPIQVL-GLSKQEARERAVKYLAKVGIdERAQGKYPVHLSGGQQQRVSIA 164
Cdd:PRK10895 76 ----ARRGIGYLPQEASIFRRLSVYDNLM-AVLQIRdDLSAEQREDRANELMEEFHI-EHLRDSMGQSLSGGERRRVEIA 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQ 244
Cdd:PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEH 229
|
....
gi 757799860 245 SPRL 248
Cdd:PRK10895 230 VKRV 233
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
6-230 |
3.69e-18 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 81.29 E-value: 3.69e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYG-----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNI-GLVRDKdgql 79
Cdd:COG1101 2 LELKNLSKTFNpgtvnEKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVtKLPEYK---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 80 kvadknqlrllRTRL-TMVFQhfn--lwSHMTVLENVMEA-------PIQvLGLSKQEaRERAVKYLAKVGIDERAQGKY 149
Cdd:COG1101 78 -----------RAKYiGRVFQdpmmgtaPSMTIEENLALAyrrgkrrGLR-RGLTKKR-RELFRELLATLGLGLENRLDT 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 150 PV-HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGK-TMVVVTHEMGFARHVSTHVIFLHQ 227
Cdd:COG1101 145 KVgLLSGGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNlTTLMVTHNMEQALDYGNRLIMMHE 224
|
...
gi 757799860 228 GKI 230
Cdd:COG1101 225 GRI 227
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
20-230 |
3.86e-18 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 80.39 E-value: 3.86e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCI-NFLEKPSA--GSIVVSGQNiglvRDKDgqlkvadknqlrLLRTRLTM 96
Cdd:cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAIsGRVEGGGTtsGQILFNGQP----RKPD------------QFQKCVAY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 97 VFQHFNLWSHMTVLENVMEAPIQVLG--LSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVL 174
Cdd:cd03234 86 VRQDDILLPGLTVRETLTYTAILRLPrkSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVL 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 175 LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG---FarHVSTHVIFLHQGKI 230
Cdd:cd03234 166 ILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRsdlF--RLFDRILLLSSGEI 222
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
16-230 |
4.19e-18 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 79.18 E-value: 4.19e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRdkdgqlkvadknqLRLLRTRLT 95
Cdd:cd03246 13 AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD-------------PNELGDHVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 96 MVFQHFNLWSHmTVLENVmeapiqvlglskqeareravkylakvgideraqgkypvhLSGGQQQRVSIARALAMEPEVLL 175
Cdd:cd03246 80 YLPQDDELFSG-SIAENI---------------------------------------LSGGQRQRLGLARALYGNPRILV 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 757799860 176 FDEPTSALDPElvGE--VLRIMQQLAEEGKTMVVVTHEMGFARHVStHVIFLHQGKI 230
Cdd:cd03246 120 LDEPNSHLDVE--GEraLNQAIAALKAAGATRIVIAHRPETLASAD-RILVLEDGRV 173
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
20-250 |
4.38e-18 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 80.99 E-value: 4.38e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDGQLKVAdknqlrllrtrltMVFQ 99
Cdd:PRK10575 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA-------------YLPQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 100 HFNLWSHMTVLENVM--EAPIQ-VLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAMEPEVLLF 176
Cdd:PRK10575 93 QLPAAEGMTVRELVAigRYPWHgALGRFGAADREKVEEAISLVGLKPLAH-RLVDSLSGGERQRAWIAMLVAQDSRCLLL 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 757799860 177 DEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFgnpQSPRLQQ 250
Cdd:PRK10575 172 DEPTSALDIAHQVDVLALVHRLSQErGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM---RGETLEQ 243
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
153-240 |
1.25e-17 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 81.72 E-value: 1.25e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPElvGE--VLRIMQQLAEEGKTMVVVTHEMGFARHVStHVIFLHQGKI 230
Cdd:COG4618 468 LSGGQRQRIGLARALYGDPRLVVLDEPNSNLDDE--GEaaLAAAIRALKARGATVVVITHRPSLLAAVD-KLLVLRDGRV 544
|
90
....*....|
gi 757799860 231 EEEGDPEQVF 240
Cdd:COG4618 545 QAFGPRDEVL 554
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
14-235 |
1.26e-17 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 79.15 E-value: 1.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 14 HYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvADKNQLRLLRTR 93
Cdd:PRK11614 14 HYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDI------------TDWQTAKIMREA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 94 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVgIDERAQGKYPvhLSGGQQQRVSIARALAMEPEV 173
Cdd:PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRL-HERRIQRAGT--MSGGEQQMLAIGRALMSQPRL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757799860 174 LLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKI--EEEGD 235
Cdd:PRK11614 159 LLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVvlEDTGD 222
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
6-251 |
1.29e-17 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 81.79 E-value: 1.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHY--GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDgqlkvad 83
Cdd:PRK11160 339 LTLNNVSFTYpdQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAA------- 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 84 knqlrlLRTRLTMVFQHFNLWSHmTVLENvmeapiqvLGLSKQEAR-ERAVKYLAKVGIDERAQGKYPV---------HL 153
Cdd:PRK11160 412 ------LRQAISVVSQRVHLFSA-TLRDN--------LLLAAPNASdEALIEVLQQVGLEKLLEDDKGLnawlgeggrQL 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAeEGKTMVVVTHEMGFARHVStHVIFLHQGKIEEE 233
Cdd:PRK11160 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLEQFD-RICVMDNGQIIEQ 554
|
250
....*....|....*...
gi 757799860 234 GDPEQVFGnpQSPRLQQF 251
Cdd:PRK11160 555 GTHQELLA--QQGRYYQL 570
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
6-234 |
1.56e-17 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 77.74 E-value: 1.56e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDkdgqlkvad 83
Cdd:cd03247 1 LSINNVSFSYPEQEqqVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEK--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 84 knqlrLLRTRLTMVFQHFNLWShMTVLENVmeapiqvlglskqeareravkylakvgideraqGKypvHLSGGQQQRVSI 163
Cdd:cd03247 72 -----ALSSLISVLNQRPYLFD-TTLRNNL---------------------------------GR---RFSGGERQRLAL 109
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 757799860 164 ARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEgKTMVVVTHEMGFARHVStHVIFLHQGKIEEEG 234
Cdd:cd03247 110 ARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWITHHLTGIEHMD-KILFLENGKIIMQG 178
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
20-243 |
3.86e-17 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 80.54 E-value: 3.86e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 20 VLKGVSLQANAGDVISIIGSSGSGKSTflrCINFLE---KPSAGSIVVSGQNIglvrdkdgqlkvaDKNQLRLLRTRLTM 96
Cdd:TIGR00958 496 VLKGLTFTLHPGEVVALVGPSGSGKST---VAALLQnlyQPTGGQVLLDGVPL-------------VQYDHHYLHRQVAL 559
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 97 VFQHFNLWSHmTVLENVmeapiqVLGLS---KQEARERAVKYLAKVGIDERAQGKYPV------HLSGGQQQRVSIARAL 167
Cdd:TIGR00958 560 VGQEPVLFSG-SVRENI------AYGLTdtpDEEIMAAAKAANAHDFIMEFPNGYDTEvgekgsQLSGGQKQRIAIARAL 632
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 757799860 168 AMEPEVLLFDEPTSALDpelvGEVLRIMQQLAE-EGKTMVVVTHEMGFARHvSTHVIFLHQGKIEEEGDPEQVFGNP 243
Cdd:TIGR00958 633 VRKPRVLILDEATSALD----AECEQLLQESRSrASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQ 704
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
121-246 |
4.94e-17 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 77.82 E-value: 4.94e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 121 LGLSKQEARERAVKYLAKVGIDE--RAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL 198
Cdd:PRK10418 107 LALGKPADDATLTAALEAVGLENaaRVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESI 186
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 757799860 199 AEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSP 246
Cdd:PRK10418 187 VQKrALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHA 235
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
6-237 |
8.18e-17 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 76.03 E-value: 8.18e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE--KPSAGSIVVSGQNIGlvrdkdgQLKVAD 83
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPkyEVTEGEILFKGEDIT-------DLPPEE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 84 KNqlrllRTRLTMVFQHfnlwshmtvlenvmeaPIQVLGLSKQEareravkYLAKVGideraqgkypVHLSGGQQQRVSI 163
Cdd:cd03217 74 RA-----RLGIFLAFQY----------------PPEIPGVKNAD-------FLRYVN----------EGFSGGEKKRNEI 115
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 757799860 164 ARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV-STHVIFLHQGKIEEEGDPE 237
Cdd:cd03217 116 LQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGDKE 190
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
141-252 |
1.15e-16 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 79.40 E-value: 1.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 141 IDERAqgkypVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSt 220
Cdd:PLN03130 734 IGERG-----VNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVD- 807
|
90 100 110
....*....|....*....|....*....|..
gi 757799860 221 HVIFLHQGKIEEEGDPEQVFGNpqSPRLQQFL 252
Cdd:PLN03130 808 RIILVHEGMIKEEGTYEELSNN--GPLFQKLM 837
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
17-230 |
1.18e-16 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 76.36 E-value: 1.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTflrCINFLEK---PSAGSIVVSGQNIGLVRDKdgqlkvadknqlrLLRTR 93
Cdd:cd03248 26 DTLVLQDVSFTLHPGEVTALVGPSGSGKST---VVALLENfyqPQGGQVLLDGKPISQYEHK-------------YLHSK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 94 LTMVFQHFNLWSHmTVLENVMEAPIQVlglSKQEARERAVKYLAKVGIDERAQGKYP------VHLSGGQQQRVSIARAL 167
Cdd:cd03248 90 VSLVGQEPVLFAR-SLQDNIAYGLQSC---SFECVKEAAQKAHAHSFISELASGYDTevgekgSQLSGGQKQRVAIARAL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 757799860 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQlAEEGKTMVVVTHEMGFARHvSTHVIFLHQGKI 230
Cdd:cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYD-WPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
153-229 |
1.37e-16 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 75.58 E-value: 1.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPElVGEvlRIMQQL----AEEGKTMVVVTHEMGFARHVStHVIFLHQG 228
Cdd:cd03250 128 LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAH-VGR--HIFENCilglLLNNKTRILVTHQLQLLPHAD-QIVVLDNG 203
|
.
gi 757799860 229 K 229
Cdd:cd03250 204 R 204
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
19-234 |
1.41e-16 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 78.60 E-value: 1.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRdkdgqlkvadknqLRLLRTRLTMVF 98
Cdd:TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT-------------LASLRRQVALVS 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 99 QHFNLWSHmTVLENV-MEAPIQVlglSKQEARERAVKYLAKVGIDERAQG-KYPV-----HLSGGQQQRVSIARALAMEP 171
Cdd:TIGR02203 413 QDVVLFND-TIANNIaYGRTEQA---DRAEIERALAAAYAQDFVDKLPLGlDTPIgengvLLSGGQRQRLAIARALLKDA 488
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 757799860 172 EVLLFDEPTSALDPE---LVGEVL-RIMQqlaeeGKTMVVVTHEMGFARHvSTHVIFLHQGKIEEEG 234
Cdd:TIGR02203 489 PILILDEATSALDNEserLVQAALeRLMQ-----GRTTLVIAHRLSTIEK-ADRIVVMDDGRIVERG 549
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
21-244 |
3.03e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 76.28 E-value: 3.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvaDKNQLRLLRTRLTMVFQH 100
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELL-------------TAENVWNLRRKIGMVFQN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 101 FNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDErAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPT 180
Cdd:PRK13642 90 PDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLD-FKTREPARLSGGQKQRVAVAGIIALRPEIIILDEST 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 757799860 181 SALDPELVGEVLRIMQQLAEEGK-TMVVVTHEMGFARHvSTHVIFLHQGKIEEEGDPEQVFGNPQ 244
Cdd:PRK13642 169 SMLDPTGRQEIMRVIHEIKEKYQlTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFATSE 232
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
44-236 |
3.27e-16 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 78.13 E-value: 3.27e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvadKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPiQVLGL 123
Cdd:TIGR01257 969 KTTTLSILTGLLPPTSGTVLVGGKDI--------------ETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYA-QLKGR 1033
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 124 SKQEARERAVKYLAKVGI----DERAQgkypvHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLa 199
Cdd:TIGR01257 1034 SWEEAQLEMEAMLEDTGLhhkrNEEAQ-----DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY- 1107
|
170 180 190
....*....|....*....|....*....|....*..
gi 757799860 200 EEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDP 236
Cdd:TIGR01257 1108 RSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
13-228 |
3.72e-16 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 77.52 E-value: 3.72e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 13 KHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGqniglvRDKDgQLKVADKNQLRLlrt 92
Cdd:PRK09700 13 KSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINN------INYN-KLDHKLAAQLGI--- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 93 rlTMVFQHFNLWSHMTVLEN--VMEAPI-QVLGLSK---QEARERAVKYLAKVGIdERAQGKYPVHLSGGQQQRVSIARA 166
Cdd:PRK09700 83 --GIIYQELSVIDELTVLENlyIGRHLTkKVCGVNIidwREMRVRAAMMLLRVGL-KVDLDEKVANLSISHKQMLEIAKT 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757799860 167 LAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQG 228
Cdd:PRK09700 160 LMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDG 221
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
140-229 |
5.70e-16 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 72.48 E-value: 5.70e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 140 GIDERAQGKYPVH---LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVgEVLRimQQLAEEGKTMVVVTHEMGFAR 216
Cdd:cd03221 55 GIVTWGSTVKIGYfeqLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESI-EALE--EALKEYPGTVILVSHDRYFLD 131
|
90
....*....|...
gi 757799860 217 HVSTHVIFLHQGK 229
Cdd:cd03221 132 QVATKIIELEDGK 144
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
16-238 |
1.33e-15 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 75.85 E-value: 1.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIVVSGQNIGLvrdkdgqlkvadknqlRLLRT 92
Cdd:TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGvkgSGSVLLNGMPIDA----------------KEMRA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 93 RLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LSKQEARERaVKYL-----------AKVGIDERAQGkypvhLSGGQQQ 159
Cdd:TIGR00955 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPrrVTKKEKRER-VDEVlqalglrkcanTRIGVPGRVKG-----LSGGERK 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH-------EMgFarhvsTHVIFLHQGKIEE 232
Cdd:TIGR00955 174 RLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHqpsselfEL-F-----DKIILMAEGRVAY 247
|
....*.
gi 757799860 233 EGDPEQ 238
Cdd:TIGR00955 248 LGSPDQ 253
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
6-240 |
3.98e-15 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 72.05 E-value: 3.98e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvaDKN 85
Cdd:TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPW-------------TRK 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRllrtRLTMVFQHFNLWSHMTVLENvMEAPIQVLGLSKQEAREravkYLAKVGIdeRAQGKYPV-HLSGGQQQRVSIA 164
Cdd:TIGR03740 68 DLH----KIGSLIESPPLYENLTAREN-LKVHTTLLGLPDSRIDE----VLNIVDL--TNTGKKKAkQFSLGMKQRLGIA 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLH------QGKIEEEGDPEQ 238
Cdd:TIGR03740 137 IALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISegvlgyQGKINKSENLEK 216
|
..
gi 757799860 239 VF 240
Cdd:TIGR03740 217 LF 218
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
79-253 |
1.42e-14 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 71.86 E-value: 1.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 79 LKVADKNQLRLLRTRLTMVFQHFNlwSHMTVLENVMEAPIQVLGLS---------KQEARERAVKYLAKVGI--DERAQG 147
Cdd:COG4170 76 LKLSPRERRKIIGREIAMIFQEPS--SCLDPSAKIGDQLIEAIPSWtfkgkwwqrFKWRKKRAIELLHRVGIkdHKDIMN 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 148 KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVV-VTHEMGFARHVSTHVIFLH 226
Cdd:COG4170 154 SYPHELTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILlISHDLESISQWADTITVLY 233
|
170 180
....*....|....*....|....*..
gi 757799860 227 QGKIEEEGDPEQVFGNPQSPRLQQFLK 253
Cdd:COG4170 234 CGQTVESGPTEQILKSPHHPYTKALLR 260
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
140-242 |
1.97e-14 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 72.70 E-value: 1.97e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 140 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVS 219
Cdd:PLN03232 728 GRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMD 807
|
90 100
....*....|....*....|...
gi 757799860 220 tHVIFLHQGKIEEEGDPEQVFGN 242
Cdd:PLN03232 808 -RIILVSEGMIKEEGTFAELSKS 829
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
16-210 |
2.17e-14 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 69.69 E-value: 2.17e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDGQlKVADKNQLRLLRTRLT 95
Cdd:TIGR01189 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHE-NILYLGHLPGLKPELS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 96 mvfqhfnlwshmtVLENvmeapIQVLGLSKQEARERAVKYLAKVGIDERAQgkYPVH-LSGGQQQRVSIARALAMEPEVL 174
Cdd:TIGR01189 90 -------------ALEN-----LHFWAAIHGGAQRTIEDALAAVGLTGFED--LPAAqLSAGQQRRLALARLWLSRRPLW 149
|
170 180 190
....*....|....*....|....*....|....*.
gi 757799860 175 LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 210
Cdd:TIGR01189 150 ILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
6-230 |
3.29e-14 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 71.62 E-value: 3.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdGQLKVADKN 85
Cdd:PRK15439 12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPC-------ARLTPAKAH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 QLRLLrtrltMVFQHFNLWSHMTVLENVMeapiqvLGLSKQEARERAVKYLAK---VGIDERAQGKYpvhLSGGQQQRVS 162
Cdd:PRK15439 85 QLGIY-----LVPQEPLLFPNLSVKENIL------FGLPKRQASMQKMKQLLAalgCQLDLDSSAGS---LEVADRQIVE 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757799860 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKI 230
Cdd:PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTI 218
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
152-257 |
5.89e-14 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 70.97 E-value: 5.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDpelVGE---VLRIMQQLAEEGKTMVVVTHEMG----FARHVstHVIF 224
Cdd:COG1245 212 ELSGGELQRVAIAAALLRDADFYFFDEPSSYLD---IYQrlnVARLIRELAEEGKYVLVVEHDLAildyLADYV--HILY 286
|
90 100 110
....*....|....*....|....*....|....*...
gi 757799860 225 lhqgkieeeGDPeQVFG---NPQSPR--LQQFLKGSLK 257
Cdd:COG1245 287 ---------GEP-GVYGvvsKPKSVRvgINQYLDGYLP 314
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
21-234 |
6.56e-14 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 70.76 E-value: 6.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 21 LKGVSLQANAGDVISIIGSSGSGKSTFlrcINFLEK---PSAGSIVVSGQNIGLVrdkdgqlkvadknQLRLLRTRLTMV 97
Cdd:PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTL---INLLQRvfdPQSGRILIDGTDIRTV-------------TRASLRRNIAVV 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 98 FQHFNLWSHmTVLENvmeapIQV--LGLSKQEARERAVKYLAKVGIdERAQGKYPVH-------LSGGQQQRVSIARALA 168
Cdd:PRK13657 415 FQDAGLFNR-SIEDN-----IRVgrPDATDEEMRAAAERAQAHDFI-ERKPDGYDTVvgergrqLSGGERQRLAIARALL 487
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757799860 169 MEPEVLLFDEPTSALDPELvgEVlRIMQQLAE--EGKTMVVVTHEMGFARHvSTHVIFLHQGKIEEEG 234
Cdd:PRK13657 488 KDPPILILDEATSALDVET--EA-KVKAALDElmKGRTTFIIAHRLSTVRN-ADRILVFDNGRVVESG 551
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
22-233 |
7.04e-14 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 70.58 E-value: 7.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 22 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDgqlkvADKNQLRLL--RTRLTMVFQ 99
Cdd:PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLD-----AVKKGMAYIteSRRDNGFFP 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 100 HFNLWSHMTVLENVMEAPIQ-VLGL-SKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFD 177
Cdd:PRK09700 355 NFSIAQNMAISRSLKDGGYKgAMGLfHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFD 434
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 757799860 178 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEE 233
Cdd:PRK09700 435 EPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
16-210 |
1.66e-13 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 67.13 E-value: 1.66e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDGQ--LKVADKNQlrlLRTR 93
Cdd:cd03231 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARglLYLGHAPG---IKTT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 94 LTmVFQHFNLWSHMTVLENVMEApiqvlglskqeareravkyLAKVGIdeRAQGKYPVH-LSGGQQQRVSIARALAMEPE 172
Cdd:cd03231 88 LS-VLENLRFWHADHSDEQVEEA-------------------LARVGL--NGFEDRPVAqLSAGQQRRVALARLLLSGRP 145
|
170 180 190
....*....|....*....|....*....|....*...
gi 757799860 173 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 210
Cdd:cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
153-237 |
1.77e-13 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 69.45 E-value: 1.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGevlRIMQQLAEE--GKTMVVVTHEMGFARHvsthviflHQGKI 230
Cdd:COG4178 486 LSLGEQQRLAFARLLLHKPDWLFLDEATSALDEENEA---ALYQLLREElpGTTVISVGHRSTLAAF--------HDRVL 554
|
....*..
gi 757799860 231 EEEGDPE 237
Cdd:COG4178 555 ELTGDGS 561
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
6-237 |
2.24e-13 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 67.40 E-value: 2.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVisiigssgsgKSTFLRCI--NFLEKPSAGSIVVSGQNIGlvrdkdgQLKVAD 83
Cdd:COG0396 1 LEIKNLHVSVEGKEILKGVNLTIKPGEVhaimgpngsgKSTLAKVLmgHPKYEVTSGSILLDGEDIL-------ELSPDE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 84 knqlrllRTR--LTMVFQH---------FNLWshMTVLENVMEAPIqvlglSKQEARERAVKYLAKVGIDERAQGKY-PV 151
Cdd:COG0396 74 -------RARagIFLAFQYpveipgvsvSNFL--RTALNARRGEEL-----SAREFLKLLKEKMKELGLDEDFLDRYvNE 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVS-THVIFLHQGKI 230
Cdd:COG0396 140 GFSGGEKKRNEILQMLLLEPKLAILDETDSGLDIDALRIVAEGVNKLRSPDRGILIITHYQRILDYIKpDFVHVLVDGRI 219
|
....*..
gi 757799860 231 EEEGDPE 237
Cdd:COG0396 220 VKSGGKE 226
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
17-210 |
2.80e-13 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 66.91 E-value: 2.80e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCI--NFLEKPSAGSIVVSGQNIGlvRDK---DGQLKVADKNQLrllr 91
Cdd:COG2401 42 ERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLagALKGTPVAGCVDVPDNQFG--REAsliDAIGRKGDFKDA---- 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 92 trltmvfqhfnlwshMTVLENVmeapiqvlGLSKqearerAVKYLAKvgideraqgkyPVHLSGGQQQRVSIARALAMEP 171
Cdd:COG2401 116 ---------------VELLNAV--------GLSD------AVLWLRR-----------FKELSTGQKFRFRLALLLAERP 155
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 757799860 172 EVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTH 210
Cdd:COG2401 156 KLLVIDEFCSHLDRQTAKRVARNLQKLARRaGITLVVATH 195
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
18-213 |
3.03e-13 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 67.60 E-value: 3.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCInflekpsagsivvsgqnIGLVRDKDGQLKVADKNQLRLLRTRL-TM 96
Cdd:PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKAL-----------------MGFVRLASGKISILGQPTRQALQKNLvAY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 97 VFQHFNL-WSHMTVLENVME----APIQVLGLSKQEARERAVKYLAKVGIDE---RAQGKypvhLSGGQQQRVSIARALA 168
Cdd:PRK15056 83 VPQSEEVdWSFPVLVEDVVMmgryGHMGWLRRAKKRDRQIVTAALARVDMVEfrhRQIGE----LSGGQKKRVFLARAIA 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 757799860 169 MEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 213
Cdd:PRK15056 159 QQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG 203
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1-232 |
3.53e-13 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 66.66 E-value: 3.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSENK--LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDgq 78
Cdd:PRK10247 1 MQENSplLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 79 lkvadknqlrlLRTRLTMVFQHFNLWSHmTVLENVMeAPIQVLGlsKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQ 158
Cdd:PRK10247 79 -----------YRQQVSYCAQTPTLFGD-TVYDNLI-FPWQIRN--QQPDPAIFLDDLERFALPDTILTKNIAELSGGEK 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 757799860 159 QRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVV-VTHEMGFARHvSTHVIFL--HQGKIEE 232
Cdd:PRK10247 144 QRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLwVTHDKDEINH-ADKVITLqpHAGEMQE 219
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
119-239 |
4.42e-13 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 67.84 E-value: 4.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 119 QVLGLSKQEARERAVKYLAKVGIDErAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL 198
Cdd:NF000106 112 R*LDLSRKDARARADELLERFSLTE-AAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSM 190
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 757799860 199 AEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQV 239
Cdd:NF000106 191 VRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
153-234 |
5.30e-13 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 68.31 E-value: 5.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAeEGKTMVVVTHEMgfarhvST-----HVIFLHQ 227
Cdd:COG5265 495 LSGGEKQRVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREVA-RGRTTLVIAHRL------STivdadEILVLEA 567
|
....*..
gi 757799860 228 GKIEEEG 234
Cdd:COG5265 568 GRIVERG 574
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
12-230 |
6.55e-13 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 66.20 E-value: 6.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 12 HKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQniglvrdkdgqlkVADKNQLRLLR 91
Cdd:cd03267 28 KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL-------------VPWKRRKKFLR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 92 tRLTMVF-QHFNLWSHMTVLE--NVMEApiqVLGLSKQEARERaVKYLAKVgIDERAQGKYPV-HLSGGQQQRVSIARAL 167
Cdd:cd03267 95 -RIGVVFgQKTQLWWDLPVIDsfYLLAA---IYDLPPARFKKR-LDELSEL-LDLEELLDTPVrQLSLGQRMRAEIAAAL 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757799860 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVT-HEMGFARHVSTHVIFLHQGKI 230
Cdd:cd03267 169 LHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTsHYMKDIEALARRVLVIDKGRL 232
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
153-239 |
7.24e-13 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 67.72 E-value: 7.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDpelVG---EVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGK 229
Cdd:PRK10762 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVD---VGakkEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472
|
90
....*....|
gi 757799860 230 IEEEGDPEQV 239
Cdd:PRK10762 473 ISGEFTREQA 482
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
17-243 |
1.03e-12 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 67.43 E-value: 1.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvadkNQLRL--LRTRL 94
Cdd:PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL---------------TKLQLdsWRSRL 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 95 TMVFQHFNLWSHmTVLENVmeapiqVLGL--SKQEARERAVKyLAKVGID--------ERAQGKYPVHLSGGQQQRVSIA 164
Cdd:PRK10789 392 AVVSQTPFLFSD-TVANNI------ALGRpdATQQEIEHVAR-LASVHDDilrlpqgyDTEVGERGVMLSGGQKQRISIA 463
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAeEGKTMVVVTHEMGfARHVSTHVIFLHQGKIEEEGDPEQVFGNP 243
Cdd:PRK10789 464 RALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS-ALTEASEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
152-239 |
1.53e-12 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 66.88 E-value: 1.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDpelVG---EVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQG 228
Cdd:PRK13549 405 RLSGGNQQKAVLAKCLLLNPKILILDEPTRGID---VGakyEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEG 481
|
90
....*....|....*.
gi 757799860 229 KIE-----EEGDPEQV 239
Cdd:PRK13549 482 KLKgdlinHNLTQEQV 497
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
79-224 |
1.63e-12 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 66.98 E-value: 1.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 79 LKVADKNqLRLLRTRLTMVFQHFNLWShMTVLENVMeapiqvlgLSKQEARERAVKYLAK-VGIDERAQ----------G 147
Cdd:PTZ00265 1284 VDICDYN-LKDLRNLFSIVSQEPMLFN-MSIYENIK--------FGKEDATREDVKRACKfAAIDEFIEslpnkydtnvG 1353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 148 KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP---ELVGEVLRIMQQLAEegKTMVVVTHEMGFARHVSTHVIF 224
Cdd:PTZ00265 1354 PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSnseKLIEKTIVDIKDKAD--KTIITIAHRIASIKRSDKIVVF 1431
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
147-235 |
2.15e-12 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 66.73 E-value: 2.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPElVGEvlRIMQQL---AEEGKTMVVVTHEMgfarHV---ST 220
Cdd:PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH-VGE--RVVEECflgALAGKTRVLATHQV----HVvprAD 849
|
90
....*....|....*
gi 757799860 221 HVIFLHQGKIEEEGD 235
Cdd:PTZ00243 850 YVVALGDGRVEFSGS 864
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
153-231 |
2.61e-12 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 66.00 E-value: 2.61e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIE 231
Cdd:TIGR02633 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
10-211 |
3.76e-12 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 65.67 E-value: 3.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 10 DLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCInflekpsAGSIVVSGQNiGLVRDKDGQLKvadKNQLRl 89
Cdd:PLN03211 73 DETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNAL-------AGRIQGNNFT-GTILANNRKPT---KQILK- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 90 lrtRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSI 163
Cdd:PLN03211 141 ---RTGFVTQDDILYPHLTVRETLVFCSLLRLpkSLTKQEKILVAESVISELGLTKCENtiigNSFIRGISGGERKRVSI 217
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 757799860 164 ARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
Cdd:PLN03211 218 AHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQ 265
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
142-217 |
5.05e-12 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 63.50 E-value: 5.05e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757799860 142 DERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR--IMQQLAEEGKTMVVVTHEMGFARH 217
Cdd:cd03290 130 DQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQegILKFLQDDKRTLVLVTHKLQYLPH 207
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
142-234 |
5.30e-12 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 65.35 E-value: 5.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 142 DERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPElVGE-----VLRIMQQLAeeGKTMVVVTHEMGFAR 216
Cdd:TIGR00957 750 DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH-VGKhifehVIGPEGVLK--NKTRILVTHGISYLP 826
|
90
....*....|....*...
gi 757799860 217 HVSThVIFLHQGKIEEEG 234
Cdd:TIGR00957 827 QVDV-IIVMSGGKISEMG 843
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
144-210 |
6.33e-12 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 62.17 E-value: 6.33e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 144 RAQGKYPVH--LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGevlRIMQQLAEEGKTMVVVTH 210
Cdd:cd03223 81 REQLIYPWDdvLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESED---RLYQLLKELGITVISVGH 146
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
15-236 |
6.85e-12 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 62.90 E-value: 6.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 15 YGEHE--VLKGVSLQAN------------AGdvisiigssgsgKSTFLRCINFLEKPSAGSIVVSGQNIGLVRdkdgqlk 80
Cdd:cd03244 12 YRPNLppVLKNISFSIKpgekvgivgrtgSG------------KSSLLLALFRLVELSSGSILIDGVDISKIG------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 81 vadknqLRLLRTRLTMVFQHFNLWSHmTVLENVmeAPiqvLGLSKQEARERAvkyLAKVGIDERAQGK-----YPV---- 151
Cdd:cd03244 73 ------LHDLRSRISIIPQDPVLFSG-TIRSNL--DP---FGEYSDEELWQA---LERVGLKEFVESLpggldTVVeegg 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 152 -HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVgevlRIMQQLAEE---GKTMVVVTHE----MGFARhvsthVI 223
Cdd:cd03244 138 eNLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD----ALIQKTIREafkDCTVLTIAHRldtiIDSDR-----IL 208
|
250
....*....|...
gi 757799860 224 FLHQGKIEEEGDP 236
Cdd:cd03244 209 VLDKGRVVEFDSP 221
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
128-230 |
7.24e-12 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 64.88 E-value: 7.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 128 ARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDpelVGEVLRIMQQLAEEGKTMVV 207
Cdd:PLN03073 320 AEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD---LHAVLWLETYLLKWPKTFIV 396
|
90 100
....*....|....*....|...
gi 757799860 208 VTHEMGFARHVSTHVIFLHQGKI 230
Cdd:PLN03073 397 VSHAREFLNTVVTDILHLHGQKL 419
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
106-238 |
8.92e-12 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 64.48 E-value: 8.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 106 HMTVLENVMeapiqvlgLSKQEARERAVKY-LAKVGIDE----RAQG-KYPVH-----LSGGQQQRVSIARALAMEPEVL 174
Cdd:PRK11174 436 HGTLRDNVL--------LGNPDASDEQLQQaLENAWVSEflplLPQGlDTPIGdqaagLSVGQAQRLALARALLQPCQLL 507
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757799860 175 LFDEPTSALDPELVGEVLRIMQQlAEEGKTMVVVTHEMGFARHVSThVIFLHQGKIEEEGDPEQ 238
Cdd:PRK11174 508 LLDEPTASLDAHSEQLVMQALNA-ASRRQTTLMVTHQLEDLAQWDQ-IWVMQDGQIVQQGDYAE 569
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
6-234 |
1.19e-11 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 64.38 E-value: 1.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRC-INFLEkPSAGSIVVSGQNIglvrdkdgqlKVAD 83
Cdd:TIGR01193 474 IVINDVSYSYGyGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLlVGFFQ-ARSGEILLNGFSL----------KDID 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 84 KNQLRLLrtrLTMVFQHFNLWSHmTVLENVMeapIQVLGLSKQEARERAVKYLA-KVGIDERAQG------KYPVHLSGG 156
Cdd:TIGR01193 543 RHTLRQF---INYLPQEPYIFSG-SILENLL---LGAKENVSQDEIWAACEIAEiKDDIENMPLGyqtelsEEGSSISGG 615
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757799860 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEegKTMVVVTHEMGFARHvSTHVIFLHQGKIEEEG 234
Cdd:TIGR01193 616 QKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD--KTIIFVAHRLSVAKQ-SDKIIVLDHGKIIEQG 690
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
153-239 |
1.96e-11 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 63.52 E-value: 1.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPElvGE--VLRIMQQLAEEGKTMVVVTHEMGfARHVSTHVIFLHQGKI 230
Cdd:TIGR01842 455 LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEE--GEqaLANAIKALKARGITVVVITHRPS-LLGCVDKILVLQDGRI 531
|
....*....
gi 757799860 231 EEEGDPEQV 239
Cdd:TIGR01842 532 ARFGERDEV 540
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
44-253 |
2.06e-11 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 62.04 E-value: 2.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIGLvrdKDGQLKVADKNQLRLLRTRLTMVFQHFNLWShmtvlENVMEaPIQVLGL 123
Cdd:cd03237 38 KTTFIKMLAGVLKPDEGDIEIELDTVSY---KPQYIKADYEGTVRDLLSSITKDFYTHPYFK-----TEIAK-PLQIEQI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 124 SKQEAREravkylakvgideraqgkypvhLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEG- 202
Cdd:cd03237 109 LDREVPE----------------------LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNe 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 757799860 203 KTMVVVTHEMGFARHVSTHVIFLhqgkieeEGDPeQVFG---NPQSPR--LQQFLK 253
Cdd:cd03237 167 KTAFVVEHDIIMIDYLADRLIVF-------EGEP-SVNGvanPPQSLRsgMNRFLK 214
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
152-257 |
2.07e-11 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 63.29 E-value: 2.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDpelVGE---VLRIMQQLAeEGKTMVVVTHEMGFARHVS--THVIFlh 226
Cdd:PRK13409 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLD---IRQrlnVARLIRELA-EGKYVLVVEHDLAVLDYLAdnVHIAY-- 285
|
90 100 110
....*....|....*....|....*....|....*.
gi 757799860 227 qgkieeeGDPeQVFG---NPQSPR--LQQFLKGSLK 257
Cdd:PRK13409 286 -------GEP-GAYGvvsKPKGVRvgINEYLKGYLP 313
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
4-210 |
2.20e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 61.43 E-value: 2.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 4 NKLNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRdkdgqlkvad 83
Cdd:PRK13539 1 MMLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD---------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 84 knqlrlLRTRLTMVfQHFN-LWSHMTVLENVmEAPIQVLGlskqEARERAVKYLAKVGIDERA--QGKYpvhLSGGQQQR 160
Cdd:PRK13539 71 ------VAEACHYL-GHRNaMKPALTVAENL-EFWAAFLG----GEELDIAAALEAVGLAPLAhlPFGY---LSAGQKRR 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 757799860 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 210
Cdd:PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATH 185
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
5-236 |
2.81e-11 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 61.27 E-value: 2.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 5 KLNVIDLHKHYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCI-NFLEkPSAGSIVVSGQNIGLVrdkdgqlkv 81
Cdd:cd03369 6 EIEVENLSVRYAPDlpPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALfRFLE-AEEGKIEIDGIDISTI--------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 82 adknQLRLLRTRLTMVFQHFNLWSHmTVLENVmeapiqvlglsKQEARERAVKYLAKVGIDERAQgkypvHLSGGQQQRV 161
Cdd:cd03369 76 ----PLEDLRSSLTIIPQDPTLFSG-TIRSNL-----------DPFDEYSDEEIYGALRVSEGGL-----NLSQGQRQLL 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 162 SIARALAMEPEVLLFDEPTSALDPE---LVGEVLRimqqlaEE--GKTMVVVTHEMG----FARhvsthVIFLHQGKIEE 232
Cdd:cd03369 135 CLARALLKRPRVLVLDEATASIDYAtdaLIQKTIR------EEftNSTILTIAHRLRtiidYDK-----ILVMDAGEVKE 203
|
....
gi 757799860 233 EGDP 236
Cdd:cd03369 204 YDHP 207
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
24-253 |
3.12e-11 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 62.51 E-value: 3.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 24 VSLQANAGDVISIIGSSGSGKSTFLRCInflekpsAGsivVSGQNIGLVRDK------DgQLKVADKNQLRLLRTRLTMV 97
Cdd:PRK15093 26 VSMTLTEGEIRGLVGESGSGKSLIAKAI-------CG---VTKDNWRVTADRmrfddiD-LLRLSPRERRKLVGHNVSMI 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 98 FQHFNlwSHMTVLENVMEAPIQVLGLSKQEAR---------ERAVKYLAKVGIDER--AQGKYPVHLSGGQQQRVSIARA 166
Cdd:PRK15093 95 FQEPQ--SCLDPSERVGRQLMQNIPGWTYKGRwwqrfgwrkRRAIELLHRVGIKDHkdAMRSFPYELTEGECQKVMIAIA 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 167 LAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQS 245
Cdd:PRK15093 173 LANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQnNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPHH 252
|
....*...
gi 757799860 246 PRLQQFLK 253
Cdd:PRK15093 253 PYTQALIR 260
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
152-257 |
3.13e-11 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 61.61 E-value: 3.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHqgkie 231
Cdd:cd03236 139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY----- 213
|
90 100 110
....*....|....*....|....*....|
gi 757799860 232 eeGDPEQ--VFGNPQSPR--LQQFLKGSLK 257
Cdd:cd03236 214 --GEPGAygVVTLPKSVRegINEFLDGYLP 241
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
153-212 |
3.44e-11 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 62.50 E-value: 3.44e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDpelVG---EVLRIMQQLAEEGKTMVVVTHEM 212
Cdd:NF040905 405 LSGGNQQKVVLSKWLFTDPDVLILDEPTRGID---VGakyEIYTIINELAAEGKGVIVISSEL 464
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
54-233 |
4.05e-11 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 62.38 E-value: 4.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 54 LEKPSAGSIVVSGQNIGlvrdkdgQLKVADknqlrllRTRLTMVF-----QHFNLWSHMTVLENVMEAPIQVLGLSKQEA 128
Cdd:PRK15439 312 LRPARGGRIMLNGKEIN-------ALSTAQ-------RLARGLVYlpedrQSSGLYLDAPLAWNVCALTHNRRGFWIKPA 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 129 RERAV--KYLAKVGIdERAQGKYPVH-LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 205
Cdd:PRK15439 378 RENAVleRYRRALNI-KFNHAEQAARtLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAV 456
|
170 180
....*....|....*....|....*...
gi 757799860 206 VVVTHEMGFARHVSTHVIFLHQGKIEEE 233
Cdd:PRK15439 457 LFISSDLEEIEQMADRVLVMHQGEISGA 484
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
152-240 |
5.21e-11 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 61.01 E-value: 5.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 152 HLSGGQQQRVSIARAL-----AMEPE--VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIF 224
Cdd:COG4138 126 QLSGGEWQRVRLAAVLlqvwpTINPEgqLLLLDEPMNSLDVAQQAALDRLLRELCQQGITVVMSSHDLNHTLRHADRVWL 205
|
90
....*....|....*.
gi 757799860 225 LHQGKIEEEGDPEQVF 240
Cdd:COG4138 206 LKQGKLVASGETAEVM 221
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
151-257 |
7.89e-11 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 59.51 E-value: 7.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEG-KTMVVVTHEMGFARHVSTHVIFLhqgk 229
Cdd:cd03222 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGkKTALVVEHDLAVLDYLSDRIHVF---- 145
|
90 100 110
....*....|....*....|....*....|..
gi 757799860 230 ieeEGDPEQ--VFGNPQSPR--LQQFLKGSLK 257
Cdd:cd03222 146 ---EGEPGVygIASQPKGTRegINRFLRGYLI 174
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
97-229 |
8.81e-11 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 61.48 E-value: 8.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 97 VFQHFNLWSHMTVLENV-MEAPIQVLGLSKQEA-RERAVKYLAKVGIDERAQgkYPV-HLSGGQQQRVSIARALAMEPEV 173
Cdd:PRK13549 87 IHQELALVKELSVLENIfLGNEITPGGIMDYDAmYLRAQKLLAQLKLDINPA--TPVgNLGLGQQQLVEIAKALNKQARL 164
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 757799860 174 LLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGK 229
Cdd:PRK13549 165 LILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
6-215 |
9.53e-11 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 59.43 E-value: 9.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKdgqlkvadkn 85
Cdd:PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE---------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 qlrllrtrltmvFQHFNLW--------SHMTVLENVMEApiqvLGLSKQEARERAVKYLAKVGIDERAQgkYPVH-LSGG 156
Cdd:PRK13538 72 ------------YHQDLLYlghqpgikTELTALENLRFY----QRLHGPGDDEALWEALAQVGLAGFED--VPVRqLSAG 133
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 757799860 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKtMVVVT--HEMGFA 215
Cdd:PRK13538 134 QQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGG-MVILTthQDLPVA 193
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
119-239 |
1.11e-10 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 61.57 E-value: 1.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 119 QVLGLSKQEARE---------RAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL---AMEPEVLLFDEPTSALDPE 186
Cdd:TIGR00630 787 DVLDMTVEEAYEffeavpsisRKLQTLCDVGLGYIRLGQPATTLSGGEAQRIKLAKELskrSTGRTLYILDEPTTGLHFD 866
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 187 LVGEVLRIMQQLAEEGKTMVVVTHEMGFARhVSTHVIFL------HQGKIEEEGDPEQV 239
Cdd:TIGR00630 867 DIKKLLEVLQRLVDKGNTVVVIEHNLDVIK-TADYIIDLgpeggdGGGTVVASGTPEEV 924
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
125-239 |
1.35e-10 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 61.08 E-value: 1.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 125 KQEArERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDpelVG---EVLRIMQQLAEE 201
Cdd:PRK11288 370 RWEA-ENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGID---VGakhEIYNVIYELAAQ 445
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 757799860 202 GKTMVVVTHE----MGfarhVSTHVIFLHQGKI-----EEEGDPEQV 239
Cdd:PRK11288 446 GVAVLFVSSDlpevLG----VADRIVVMREGRIagelaREQATERQA 488
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
44-229 |
2.57e-10 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 60.13 E-value: 2.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDGqlkvadknqlrlLRTRLTMVFQHFNLWSHMTVLENVM--EAPIQVL 121
Cdd:PRK10982 37 KSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEA------------LENGISMVHQELNLVLQRSVMDNMWlgRYPTKGM 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 122 GLSKQEARERAVKYLAKVGIDERAQGKYpVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE 201
Cdd:PRK10982 105 FVDQDKMYRDTKAIFDELDIDIDPRAKV-ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER 183
|
170 180
....*....|....*....|....*...
gi 757799860 202 GKTMVVVTHEMGFARHVSTHVIFLHQGK 229
Cdd:PRK10982 184 GCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
126-231 |
3.10e-10 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 59.80 E-value: 3.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 126 QEARERAVKYLAKVGIDERAQGKYpVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 205
Cdd:NF040905 114 NETNRRARELLAKVGLDESPDTLV-TDIGVGKQQLVEIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLELKAQGITS 192
|
90 100
....*....|....*....|....*..
gi 757799860 206 VVVTHEMGFARHVSTHVIFLHQGK-IE 231
Cdd:NF040905 193 IIISHKLNEIRRVADSITVLRDGRtIE 219
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
129-230 |
4.13e-10 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 59.26 E-value: 4.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 129 RERAVKYLAKVGIDERaQGKYPVH-LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKT-MV 206
Cdd:PRK10938 378 QKLAQQWLDILGIDKR-TADAPFHsLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETqLL 456
|
90 100
....*....|....*....|....*
gi 757799860 207 VVTHEMGFARHVSTH-VIFLHQGKI 230
Cdd:PRK10938 457 FVSHHAEDAPACITHrLEFVPDGDI 481
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
151-234 |
4.48e-10 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 59.26 E-value: 4.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPElvGEvlRIMQQLAEE---GKTMVVVTHEMgfarhvST-----HV 222
Cdd:PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTE--SE--RAIQAALDElqkNRTSLVIAHRL------STiekadEI 548
|
90
....*....|..
gi 757799860 223 IFLHQGKIEEEG 234
Cdd:PRK11176 549 LVVEDGEIVERG 560
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
148-212 |
4.95e-10 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 59.36 E-value: 4.95e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 757799860 148 KYPVH------LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212
Cdd:PRK10982 381 KTPGHrtqigsLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM 451
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
18-239 |
6.83e-10 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 58.88 E-value: 6.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 18 HEVLKGVSLQANAGDVisiigssgsgkSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdGQLKVADKNQLRLLRT---RL 94
Cdd:COG3845 271 VPALKDVSLEVRAGEIlgiagvagngqSELAEALAGLRPPASGSIRLDGEDI-------TGLSPRERRRLGVAYIpedRL 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 95 TM-VFQHFNLWSHMtVLENVMEAPIQVLG-LSKQEARERAVKYLAKVGIdeRAQG-KYPV-HLSGGQQQRVSIARALAME 170
Cdd:COG3845 344 GRgLVPDMSVAENL-ILGRYRRPPFSRGGfLDRKAIRAFAEELIEEFDV--RTPGpDTPArSLSGGNQQKVILARELSRD 420
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757799860 171 PEVLLFDEPTSALDpelVGEVLRIMQQL---AEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQV 239
Cdd:COG3845 421 PKLLIAAQPTRGLD---VGAIEFIHQRLlelRDAGAAVLLISEDLDEILALSDRIAVMYEGRIVGEVPAAEA 489
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
13-229 |
7.22e-10 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 58.68 E-value: 7.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 13 KHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLR--CINFLEKPSAGSIVVSGQNIGL--VRDKDgqlkvadknqlr 88
Cdd:TIGR02633 9 KTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKilSGVYPHGTWDGEIYWSGSPLKAsnIRDTE------------ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 89 llRTRLTMVFQHFNLWSHMTVLENV-MEAPIQVLG--LSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIAR 165
Cdd:TIGR02633 77 --RAGIVIIHQELTLVPELSVAENIfLGNEITLPGgrMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAK 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757799860 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGK 229
Cdd:TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
21-212 |
7.60e-10 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 58.48 E-value: 7.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGLVRDKDGQlkvadknqlrllRTRLTMVFQH 100
Cdd:PRK10762 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQ------------EAGIGIIHQE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 101 FNLWSHMTVLENVM--EAPIQVLGLSK-QEARERAVKYLAKVGIDERAQ---GKypvhLSGGQQQRVSIARALAMEPEVL 174
Cdd:PRK10762 88 LNLIPQLTIAENIFlgREFVNRFGRIDwKKMYAEADKLLARLNLRFSSDklvGE----LSIGEQQMVEIAKVLSFESKVI 163
|
170 180 190
....*....|....*....|....*....|....*...
gi 757799860 175 LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212
Cdd:PRK10762 164 IMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL 201
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
153-210 |
1.29e-09 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 57.90 E-value: 1.29e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTH 210
Cdd:PRK13409 454 LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEErEATALVVDH 512
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
107-254 |
3.57e-09 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 56.82 E-value: 3.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 107 MTVLENVmEAPIQVLGLSKQEARERAVKYLAKVGIderaqGKY---PVH-LSGGQQQRVSIARALAMEPEVLLFDEPTSA 182
Cdd:PRK13545 100 LTGIENI-ELKGLMMGLTKEKIKEIIPEIIEFADI-----GKFiyqPVKtYSSGMKSRLGFAISVHINPDILVIDEALSV 173
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757799860 183 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNpqsprLQQFLKG 254
Cdd:PRK13545 174 GDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH-----YDEFLKK 240
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
153-212 |
3.61e-09 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 56.72 E-value: 3.61e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEM 212
Cdd:COG1245 456 LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAENrGKTAMVVDHDI 516
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
153-246 |
3.80e-09 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 56.96 E-value: 3.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHVSThvIFLHQGKie 231
Cdd:PTZ00265 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLkGNENRITIIIAHRLSTIRYANT--IFVLSNR-- 655
|
90
....*....|....*
gi 757799860 232 EEGDPEQVFGNPQSP 246
Cdd:PTZ00265 656 ERGSTVDVDIIGEDP 670
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
83-230 |
5.03e-09 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 56.11 E-value: 5.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 83 DKNQLRLlrTRLTMVFQHFNLWShmtvLENVMEAPIQVLGLSkqearerAVKYLAKvgideraqgkypvhLSGGQQQRVS 162
Cdd:PRK11147 114 EKNLNEL--AKLQEQLDHHNLWQ----LENRINEVLAQLGLD-------PDAALSS--------------LSGGWLRKAA 166
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757799860 163 IARALAMEPEVLLFDEPTSALDPELVgEVLRimQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKI 230
Cdd:PRK11147 167 LGRALVSNPDVLLLDEPTNHLDIETI-EWLE--GFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKL 231
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
99-237 |
5.57e-09 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 56.29 E-value: 5.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 99 QHFNLWSHMTVLEN-VMEApiQVLGLSKQEARERAVKYLAKVGIDErAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFD 177
Cdd:NF033858 346 QAFSLYGELTVRQNlELHA--RLFHLPAAEIAARVAEMLERFDLAD-VADALPDSLPLGIRQRLSLAVAVIHKPELLILD 422
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 757799860 178 EPTSALDPELVGEVLRIMQQLA-EEGKTMVVVTHEMGFA----RhVSthviFLHQGKIEEEGDPE 237
Cdd:NF033858 423 EPTSGVDPVARDMFWRLLIELSrEDGVTIFISTHFMNEAercdR-IS----LMHAGRVLASDTPA 482
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
44-230 |
6.79e-09 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 55.48 E-value: 6.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVSGqniglvrdkdgqlKVADKNQLRLLRtRLTMVF-QHFNLWSHMTVLE--NVMEApiqV 120
Cdd:COG4586 61 KSTTIKMLTGILVPTSGEVRVLG-------------YVPFKRRKEFAR-RIGVVFgQRSQLWWDLPAIDsfRLLKA---I 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 121 LGLSKQEARERaVKYLAKV-GIDEraQGKYPV-HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP---ELVGEVLRIM 195
Cdd:COG4586 124 YRIPDAEYKKR-LDELVELlDLGE--LLDTPVrQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVvskEAIREFLKEY 200
|
170 180 190
....*....|....*....|....*....|....*
gi 757799860 196 QQlaEEGKTMVVVTHEMGFARHVSTHVIFLHQGKI 230
Cdd:COG4586 201 NR--ERGTTILLTSHDMDDIEALCDRVIVIDHGRI 233
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
119-212 |
8.23e-09 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 54.93 E-value: 8.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 119 QVLGLSKQEARE---------RAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME---PEVLLFDEPTSALDPE 186
Cdd:cd03271 127 DVLDMTVEEALEffenipkiaRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRstgKTLYILDEPTTGLHFH 206
|
90 100
....*....|....*....|....*.
gi 757799860 187 LVGEVLRIMQQLAEEGKTMVVVTHEM 212
Cdd:cd03271 207 DVKKLLEVLQRLVDKGNTVVVIEHNL 232
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
152-218 |
9.82e-09 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 55.33 E-value: 9.82e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 757799860 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPElvgEVLRIMQQLAEEGKTMVVVTHEMGFARHV 218
Cdd:TIGR03719 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAE---SVAWLERHLQEYPGTVVAVTHDRYFLDNV 224
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
44-242 |
1.09e-08 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 55.33 E-value: 1.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVsGQNIglvrdkdgqlKVADKNQLRLlrtrltmvfqhfNLWSHMTVLENVMEApIQVLGL 123
Cdd:TIGR03719 361 KSTLFRMITGQEQPDSGTIEI-GETV----------KLAYVDQSRD------------ALDPNKTVWEEISGG-LDIIKL 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 124 SKQEARERAvkYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPelvgEVLRIMQQ-LAEEG 202
Cdd:TIGR03719 417 GKREIPSRA--YVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV----ETLRALEEaLLNFA 490
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 757799860 203 KTMVVVTHEMGFARHVSTHVI-FlhqgkieeEGDPEQVF--GN 242
Cdd:TIGR03719 491 GCAVVISHDRWFLDRIATHILaF--------EGDSHVEWfeGN 525
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
153-211 |
1.52e-08 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 53.02 E-value: 1.52e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
Cdd:cd03232 109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQ 167
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
21-253 |
2.11e-08 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 53.67 E-value: 2.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIvvsgqniglvrDKDGQLKVADKNQlrllrtrltmvfqh 100
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV-----------DRNGEVSVIAISA-------------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 101 fNLWSHMTVLENVmEAPIQVLGLSKQEareraVKYLAKVGIDERAQGKY---PV-HLSGGQQQRVSIARALAMEPEVLLF 176
Cdd:PRK13546 95 -GLSGQLTGIENI-EFKMLCMGFKRKE-----IKAMTPKIIEFSELGEFiyqPVkKYSSGMRAKLGFSINITVNPDILVI 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 757799860 177 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFgnpqsPRLQQFLK 253
Cdd:PRK13546 168 DEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL-----PKYEAFLN 239
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
153-209 |
1.05e-07 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 50.72 E-value: 1.05e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVT 209
Cdd:cd03233 119 ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVS 175
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
152-210 |
1.85e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 51.66 E-value: 1.85e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPElvgEVLRIMQQLAEEGKTMVVVTH 210
Cdd:PRK11819 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE---SVAWLEQFLHDYPGTVVAVTH 218
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
70-210 |
2.20e-07 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 50.23 E-value: 2.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 70 GLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF-NLWSHMTVLENVMeapiQVLGLSKQEARERAVKYLAKVGIDERAQgK 148
Cdd:PRK13543 59 GLLHVESGQIQIDGKTATRGDRSRFMAYLGHLpGLKADLSTLENLH----FLCGLHGRRAKQMPGSALAIVGLAGYED-T 133
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 757799860 149 YPVHLSGGQQQRVSIARaLAMEPEVL-LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 210
Cdd:PRK13543 134 LVRQLSAGQKKRLALAR-LWLSPAPLwLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
153-234 |
3.59e-07 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 48.86 E-value: 3.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPE--VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHvSTHVIFL----- 225
Cdd:cd03238 88 LSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS-ADWIIDFgpgsg 166
|
90
....*....|
gi 757799860 226 -HQGKIEEEG 234
Cdd:cd03238 167 kSGGKVVFSG 176
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
153-257 |
6.02e-07 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 50.02 E-value: 6.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPE---VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARhVSTHVIFL---- 225
Cdd:COG0178 827 LSGGEAQRVKLASELSKRSTgktLYILDEPTTGLHFHDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWIIDLgpeg 905
|
90 100 110
....*....|....*....|....*....|....
gi 757799860 226 --HQGKIEEEGDPEQVFGNPQSPrLQQFLKGSLK 257
Cdd:COG0178 906 gdGGGEIVAEGTPEEVAKVKASY-TGRYLKEYLE 938
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
42-237 |
8.70e-07 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 49.41 E-value: 8.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 42 SGKSTFLRCINFLEKPSAGSIVVsgqniglvrdkDGQLkVADKNQLRlLRTRLTMVFQHFNLWSHmtvlenvmeapiqVL 121
Cdd:COG4615 369 SGKSTLAKLLTGLYRPESGEILL-----------DGQP-VTADNREA-YRQLFSAVFSDFHLFDR-------------LL 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 122 GLSKQEARERAVKYLAKVGIDER---AQGKY-PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP--------ELVG 189
Cdd:COG4615 423 GLDGEADPARARELLERLELDHKvsvEDGRFsTTDLSQGQRKRLALLVALLEDRPILVFDEWAADQDPefrrvfytELLP 502
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 757799860 190 EvlrimqqLAEEGKTMVVVTH-EMGFarHVSTHVIFLHQGKIEEEGDPE 237
Cdd:COG4615 503 E-------LKARGKTVIAISHdDRYF--DLADRVLKMDYGKLVELTGPA 542
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
110-231 |
1.75e-06 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 48.86 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 110 LENVMEAPIQVLGLSKQEareravkylakvgidERAQGKYpvhlSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVG 189
Cdd:TIGR01257 2047 IEKVANWSIQSLGLSLYA---------------DRLAGTY----SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARR 2107
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 757799860 190 EVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIE 231
Cdd:TIGR01257 2108 MLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQ 2149
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
43-211 |
1.95e-06 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 48.43 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 43 GKSTFLRCINFLEKPSAGSIVVSGQNIglvrdkdgqlkvaDKNQLRLLRTRLTMVFQHFNLWSHMtvlenvmeapiqvLG 122
Cdd:PRK10522 361 GKSTLAMLLTGLYQPQSGEILLDGKPV-------------TAEQPEDYRKLFSAVFTDFHLFDQL-------------LG 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 123 LSKQEARERAV-KYLAKVGIDERAQ---GKYP-VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQ 196
Cdd:PRK10522 415 PEGKPANPALVeKWLERLKMAHKLEledGRISnLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQvLLP 494
|
170
....*....|....*
gi 757799860 197 QLAEEGKTMVVVTHE 211
Cdd:PRK10522 495 LLQEMGKTIFAISHD 509
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
153-211 |
2.22e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 48.57 E-value: 2.22e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLF-DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
Cdd:TIGR00956 902 LNVEQRKRLTIGVELVAKPKLLLFlDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQ 961
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
6-211 |
2.33e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 46.87 E-value: 2.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 6 LNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIglvrDKDgqlkvadkn 85
Cdd:PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI----KKD--------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 86 qLRLLRTRLTMVFQHFNLWSHMTVLENVMEApiqvLGLSKQEARERAVKYLAKVG--IDeraqgkYPVH-LSGGQQQRVS 162
Cdd:PRK13540 69 -LCTYQKQLCFVGHRSGINPYLTLRENCLYD----IHFSPGAVGITELCRLFSLEhlID------YPCGlLSSGQKRQVA 137
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 757799860 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
Cdd:PRK13540 138 LLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ 186
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
126-245 |
3.09e-06 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 48.09 E-value: 3.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 126 QEARERaVKYLAKVGID----ERAQGKypvhLSGGQQQRVSIARALAMEPEVLLF--DEPTSALDPELVGEVLRIMQQLA 199
Cdd:TIGR00630 463 KEIRER-LGFLIDVGLDylslSRAAGT----LSGGEAQRIRLATQIGSGLTGVLYvlDEPSIGLHQRDNRRLINTLKRLR 537
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 757799860 200 EEGKTMVVVTHEMGFARHvSTHVIFL------HQGKIEEEGDPEQVFGNPQS 245
Cdd:TIGR00630 538 DLGNTLIVVEHDEDTIRA-ADYVIDIgpgageHGGEVVASGTPEEILANPDS 588
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
136-256 |
3.18e-06 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 47.90 E-value: 3.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 136 LAKVGIDERAQGKYPVHLSGGQQQRVSIARAL---AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212
Cdd:PRK00635 793 LCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELlapSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM 872
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 757799860 213 GFARhVSTHVIFLHqgkiEEEGD----------PEQVF--GNPQSPRLQQFLKGSL 256
Cdd:PRK00635 873 HVVK-VADYVLELG----PEGGNlggyllascsPEELIhlHTPTAKALRPYLSSPQ 923
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
153-240 |
3.21e-06 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 47.79 E-value: 3.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPelvGEVLRIMQQLAE--EGKTMVVVTHEMgfarhvST-----HVIFL 225
Cdd:PRK10790 477 LSVGQKQLLALARVLVQTPQILILDEATANIDS---GTEQAIQQALAAvrEHTTLVVIAHRL------STiveadTILVL 547
|
90
....*....|....*
gi 757799860 226 HQGKIEEEGDPEQVF 240
Cdd:PRK10790 548 HRGQAVEQGTHQQLL 562
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
152-239 |
3.23e-06 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 46.85 E-value: 3.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 152 HLSGGQQQRVSIA-------RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIF 224
Cdd:PRK03695 126 QLSGGEWQRVRLAavvlqvwPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWL 205
|
90
....*....|....*
gi 757799860 225 LHQGKIEEEGDPEQV 239
Cdd:PRK03695 206 LKQGKLLASGRRDEV 220
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
122-239 |
3.64e-06 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 47.13 E-value: 3.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 122 GLSKQEARERAVKYLAKVGIDERAqGKYPVHLSGGQQQRVSIARALAM---------EPEVLLFDEPTSALDPELVGEVL 192
Cdd:PRK13547 116 GALTHRDGEIAWQALALAGATALV-GRDVTTLSGGELARVQFARVLAQlwpphdaaqPPRYLLLDEPTAALDLAHQHRLL 194
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 757799860 193 RIMQQLAEEGKTMVV-VTHEMGF-ARHVSThVIFLHQGKIEEEGDPEQV 239
Cdd:PRK13547 195 DTVRRLARDWNLGVLaIVHDPNLaARHADR-IAMLADGAIVAHGAPADV 242
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
153-228 |
5.25e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 45.06 E-value: 5.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRI------MQQLAEEGKTMVVVTHEMGF-----ARHVSTH 221
Cdd:smart00382 61 GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLeelrllLLLKSEKNLTVILTTNDEKDlgpalLRRRFDR 140
|
....*..
gi 757799860 222 VIFLHQG 228
Cdd:smart00382 141 RIVLLLI 147
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
153-211 |
5.44e-06 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 47.15 E-value: 5.44e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
Cdd:PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1078
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
115-237 |
5.97e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 47.09 E-value: 5.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 115 EAPIQVLG-LSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDpelvgevLR 193
Cdd:PRK10636 392 ESPLQHLArLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD-------LD 464
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 757799860 194 IMQQLAE-----EGkTMVVVTHEMGFARHVSTHVIFLHQGKIEE-EGDPE 237
Cdd:PRK10636 465 MRQALTEalidfEG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPfDGDLE 513
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
151-235 |
6.13e-06 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 46.32 E-value: 6.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVS-THVIFLHQGK 229
Cdd:PRK09580 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKpDYVHVLYQGR 223
|
....*.
gi 757799860 230 IEEEGD 235
Cdd:PRK09580 224 IVKSGD 229
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
150-210 |
9.85e-06 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 45.84 E-value: 9.85e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757799860 150 PVHLSGGQQQ---RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 210
Cdd:pfam13304 234 AFELSDGTKRllaLLAALLSALPKGGLLLIDEPESGLHPKLLRRLLELLKELSRNGAQLILTTH 297
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
100-209 |
1.17e-05 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 46.26 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 100 HFnlwSHMTVLENV-----MEAP-IQVLGLSKQEARERAVKYLA-----------KVGiDERAQGkypvhLSGGQQQRVS 162
Cdd:TIGR00956 149 HF---PHLTVGETLdfaarCKTPqNRPDGVSREEYAKHIADVYMatyglshtrntKVG-NDFVRG-----VSGGERKRVS 219
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 757799860 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVT 209
Cdd:TIGR00956 220 IAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVA 266
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
44-242 |
1.32e-05 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 45.88 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 44 KSTFLRCINFLEKPSAGSIVVsGQNIglvrdkdgqlKVADKNQLRLlrtrltmvfqhfNLWSHMTVLENVMEApIQVLGL 123
Cdd:PRK11819 363 KSTLFKMITGQEQPDSGTIKI-GETV----------KLAYVDQSRD------------ALDPNKTVWEEISGG-LDIIKV 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 124 SKQEARERAvkYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDpelVgEVLRIMQQ-LAEEG 202
Cdd:PRK11819 419 GNREIPSRA--YVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD---V-ETLRALEEaLLEFP 492
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 757799860 203 KTMVVVTHEMGFARHVSTHVI-FlhqgkieeEGDPEQVF--GN 242
Cdd:PRK11819 493 GCAVVISHDRWFLDRIATHILaF--------EGDSQVEWfeGN 527
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
15-244 |
1.47e-05 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 45.10 E-value: 1.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 15 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIvvsgqniglvrDKDGQLKVADKNQLRLLRTRL 94
Cdd:PRK09544 14 FGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKLRIGYVPQKLYLDTTL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 95 TMVFQHFnlwshMTVLENVMEAPIqVLGLSKQEARERAVKYLAKvgideraqgkypvhLSGGQQQRVSIARALAMEPEVL 174
Cdd:PRK09544 83 PLTVNRF-----LRLRPGTKKEDI-LPALKRVQAGHLIDAPMQK--------------LSGGETQRVLLARALLNRPQLL 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 757799860 175 LFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQgKIEEEGDPEQVFGNPQ 244
Cdd:PRK09544 143 VLDEPTQGVDVNGQVALYDLIDQLRRElDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLHPE 212
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
154-245 |
2.11e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 45.50 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDpelVGEVLRIMQQLAEEGK--TMVVVTHEMGFARHvSTHVIFLHQGKIE 231
Cdd:PLN03130 1376 SVGQRQLLSLARALLRRSKILVLDEATAAVD---VRTDALIQKTIREEFKscTMLIIAHRLNTIID-CDRILVLDAGRVV 1451
|
90
....*....|....
gi 757799860 232 EEGDPEQVFGNPQS 245
Cdd:PLN03130 1452 EFDTPENLLSNEGS 1465
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
152-208 |
2.23e-05 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 45.01 E-value: 2.23e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 757799860 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVV 208
Cdd:PRK10938 135 YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLV 191
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
102-185 |
2.33e-05 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 45.12 E-value: 2.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 102 NLWSHMTVLENvmeapIQ----VLGLSKQEARERAVKYLAKVGID---ERAQGKypvhLSGGQQQRVSIARALAMEPEVL 174
Cdd:NF033858 88 NLYPTLSVFEN-----LDffgrLFGQDAAERRRRIDELLRATGLApfaDRPAGK----LSGGMKQKLGLCCALIHDPDLL 158
|
90
....*....|.
gi 757799860 175 LFDEPTSALDP 185
Cdd:NF033858 159 ILDEPTTGVDP 169
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-237 |
2.63e-05 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 44.25 E-value: 2.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 1 MSENKLNVIDLHKHYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCI------NFLEkpsaGSIVVSGQNIglvrd 74
Cdd:CHL00131 3 KNKPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIaghpayKILE----GDILFKGESI----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 75 kdGQLKVADKNQLRLLrtrltMVFQH---FNLWSHMTVLENVMEAPIQVLGLSKQEA---RERAVKYLAKVGIDERAQGK 148
Cdd:CHL00131 74 --LDLEPEERAHLGIF-----LAFQYpieIPGVSNADFLRLAYNSKRKFQGLPELDPlefLEIINEKLKLVGMDPSFLSR 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 149 YpVH--LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVS---THVI 223
Cdd:CHL00131 147 N-VNegFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKpdyVHVM 225
|
250
....*....|....
gi 757799860 224 flHQGKIEEEGDPE 237
Cdd:CHL00131 226 --QNGKIIKTGDAE 237
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
153-257 |
3.13e-05 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 44.68 E-value: 3.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPE---VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARhVSTHVIFL---- 225
Cdd:PRK00349 831 LSGGEAQRVKLAKELSKRSTgktLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWIIDLgpeg 909
|
90 100 110
....*....|....*....|....*....|....
gi 757799860 226 --HQGKIEEEGDPEQVFGNPQSpRLQQFLKGSLK 257
Cdd:PRK00349 910 gdGGGEIVATGTPEEVAKVEAS-YTGRYLKPVLE 942
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
129-223 |
3.30e-05 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 43.79 E-value: 3.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 129 RERaVKYLAKVGID----ERAQGKypvhLSGGQQQRVSIARALAMEPEVLL--FDEPTSALDPELVGEVLRIMQQLAEEG 202
Cdd:cd03270 115 RER-LGFLVDVGLGyltlSRSAPT----LSGGEAQRIRLATQIGSGLTGVLyvLDEPSIGLHPRDNDRLIETLKRLRDLG 189
|
90 100
....*....|....*....|.
gi 757799860 203 KTMVVVTHEMGFARHvSTHVI 223
Cdd:cd03270 190 NTVLVVEHDEDTIRA-ADHVI 209
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
20-239 |
3.60e-05 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 44.94 E-value: 3.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQN---IGLvRDKDGQLKVADKNQLrLLRTRLTM 96
Cdd:TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNiakIGL-HDLRFKITIIPQDPV-LFSGSLRM 1378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 97 VFQHFNLWSHMTVLENVMEAPIQVLgLSKQEAreravkylakvGID-ERAQGKYpvHLSGGQQQRVSIARALAMEPEVLL 175
Cdd:TIGR00957 1379 NLDPFSQYSDEEVWWALELAHLKTF-VSALPD-----------KLDhECAEGGE--NLSVGQRQLVCLARALLRKTKILV 1444
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 757799860 176 FDEPTSALDPE---LVGEVLRimQQLaeEGKTMVVVTHEMGFARHVsTHVIFLHQGKIEEEGDPEQV 239
Cdd:TIGR00957 1445 LDEATAAVDLEtdnLIQSTIR--TQF--EDCTVLTIAHRLNTIMDY-TRVIVLDKGEVAEFGAPSNL 1506
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
160-230 |
3.78e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 44.50 E-value: 3.78e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757799860 160 RVSIARALAMEPEVLLFDEPTSALDPelvgEVLRIMQQ-LAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKI 230
Cdd:PRK15064 163 RVLLAQALFSNPDILLLDEPTNNLDI----NTIRWLEDvLNERNSTMIIISHDRHFLNSVCTHMADLDYGEL 230
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
153-210 |
6.18e-05 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 43.97 E-value: 6.18e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGevlRIMQQLAEEGKTMVVVTH 210
Cdd:TIGR00954 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG---YMYRLCREFGITLFSVSH 637
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
20-245 |
7.32e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 44.00 E-value: 7.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIVVSGQNIGlvrdkdgqlkvadKNQLRLLRTRLTMVFQ 99
Cdd:PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIG-------------AYGLRELRRQFSMIPQ 1391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 100 HFNLWSHmTVLENV---MEA-------PIQVLGLSKQEARERAvkylakvGIDERAQ---GKYPVhlsgGQQQRVSIARA 166
Cdd:PTZ00243 1392 DPVLFDG-TVRQNVdpfLEAssaevwaALELVGLRERVASESE-------GIDSRVLeggSNYSV----GQRQLMCMARA 1459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 167 LAMEPE-VLLFDEPTSALDPELVGEV-LRIMQqlAEEGKTMVVVTHEMgfarHVSTH---VIFLHQGKIEEEGDPEQVFG 241
Cdd:PTZ00243 1460 LLKKGSgFILMDEATANIDPALDRQIqATVMS--AFSAYTVITIAHRL----HTVAQydkIIVMDHGAVAEMGSPRELVM 1533
|
....
gi 757799860 242 NPQS 245
Cdd:PTZ00243 1534 NRQS 1537
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
153-211 |
7.90e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 43.66 E-value: 7.90e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 757799860 153 LSGGQQQRVSIARALAMEPE--VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
Cdd:PRK00635 477 LSGGEQERTALAKHLGAELIgiTYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHD 537
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
153-245 |
1.73e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 42.66 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQqlaEEGK--TMVVVTHEMGFARHVStHVIFLHQGKI 230
Cdd:PLN03232 1372 FSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR---EEFKscTMLVIAHRLNTIIDCD-KILVLSSGQV 1447
|
90
....*....|....*
gi 757799860 231 EEEGDPEQVFGNPQS 245
Cdd:PLN03232 1448 LEYDSPQELLSRDTS 1462
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
108-228 |
1.74e-04 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 42.15 E-value: 1.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 108 TVLENVmeapiqVLGLSKQEARERAV-----------KYLAKvgiDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLF 176
Cdd:cd03291 113 TIKENI------IFGVSYDEYRYKSVvkacqleeditKFPEK---DNTVLGEGGITLSGGQRARISLARAVYKDADLYLL 183
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 757799860 177 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARhVSTHVIFLHQG 228
Cdd:cd03291 184 DSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEG 234
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
153-210 |
1.93e-04 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 40.81 E-value: 1.93e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757799860 153 LSGGQQQRVSIARALAME---PEVL-LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 210
Cdd:cd03227 78 LSGGEKELSALALILALAslkPRPLyILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITH 139
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
108-228 |
2.44e-04 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 42.20 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 108 TVLENVmeapiqVLGLSKQEARERAV-----------KYLAKvgiDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLF 176
Cdd:TIGR01271 502 TIKDNI------IFGLSYDEYRYTSVikacqleediaLFPEK---DKTVLGEGGITLSGGQRARISLARAVYKDADLYLL 572
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 757799860 177 DEPTSALDPELVGEVL-RIMQQLAEEgKTMVVVTHEMGFARHvSTHVIFLHQG 228
Cdd:TIGR01271 573 DSPFTHLDVVTEKEIFeSCLCKLMSN-KTRILVTSKLEHLKK-ADKILLLHEG 623
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
153-223 |
1.00e-03 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 39.13 E-value: 1.00e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 153 LSGGQQQRVSIARALAMEP------EVLLFDEPTSALDPELVGEVLR--IMQQLAEEGKTMVVVTHEMGFARHVStHVI 223
Cdd:cd03240 116 CSGGEKVLASLIIRLALAEtfgsncGILALDEPTTNLDEENIEESLAeiIEERKSQKNFQLIVITHDEELVDAAD-HIY 193
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
129-232 |
1.12e-03 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 40.15 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 129 RERAVKYLAKVGIDERaQGKYPVH-LSGGQQQRVSIARALAMEPEVLLFDEPTSALDpelVGEVLRIMQQLAEEGKTMVV 207
Cdd:PRK10636 126 RSRAASLLHGLGFSNE-QLERPVSdFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD---LDAVIWLEKWLKSYQGTLIL 201
|
90 100
....*....|....*....|....*
gi 757799860 208 VTHEMGFARHVSTHVIFLHQGKIEE 232
Cdd:PRK10636 202 ISHDRDFLDPIVDKIIHIEQQSLFE 226
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
153-230 |
1.68e-03 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 39.49 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVgEVLrimqQLAEE---GkTMVVVTHEMGFARHVSTHVIFLHQGK 229
Cdd:PRK15064 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESI-ESL----NMALEkyeG-TLIFVSHDREFVSSLATRIIEITPDG 512
|
.
gi 757799860 230 I 230
Cdd:PRK15064 513 V 513
|
|
| ABC_sbcCD |
cd03279 |
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are ... |
153-210 |
1.96e-03 |
|
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Pssm-ID: 213246 [Multi-domain] Cd Length: 213 Bit Score: 38.40 E-value: 1.96e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757799860 153 LSGGQQQRVSIARALAMEPEV---------LLF-DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 210
Cdd:cd03279 124 LSGGETFLASLSLALALSEVLqnrggarleALFiDEGFGTLDPEALEAVATALELIRTENRMVGVISH 191
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
153-211 |
3.44e-03 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 38.69 E-value: 3.44e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 757799860 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVgEVLriMQQLAEEGKTMVVVTHE 211
Cdd:PLN03073 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAV-EAL--IQGLVLFQGGVLMVSHD 683
|
|
| Rad50_Sulf |
NF041034 |
DNA double-strand break repair ATPase Rad50; |
153-211 |
5.87e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 468963 [Multi-domain] Cd Length: 872 Bit Score: 37.77 E-value: 5.87e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 757799860 153 LSGGQQ------QRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
Cdd:NF041034 780 LSGGERisialaLRLAIAKSLMDEIGFMILDEPTVHLDEERKKELIDIIRSSMEIVPQIIVVTHD 844
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
150-232 |
6.47e-03 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 37.62 E-value: 6.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 150 PVH-LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVgEVLRIMqqLAEEGKTMVVVTHEMGFARH-VSTHVIFLHQ 227
Cdd:PRK11147 437 PVKaLSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETL-ELLEEL--LDSYQGTVLLVSHDRQFVDNtVTECWIFEGN 513
|
....*
gi 757799860 228 GKIEE 232
Cdd:PRK11147 514 GKIGR 518
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
129-239 |
8.21e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 37.26 E-value: 8.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757799860 129 RERAVKY--LAKVGIDERAQGKYPVH-LSGGQQQRVSIARALAMEP----------EVLLFDEPTSALDPELVGEVLRIM 195
Cdd:TIGR00618 924 HVNARKYqgLALLVADAYTGSVRPSAtLSGGETFLASLSLALALADllstsggtvlDSLFIDEGFGSLDEDSLDRAIGIL 1003
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 757799860 196 QQLAEEGKTMVVVTHEMGFARHvsthviFLHQGKIEEEGDPEQV 239
Cdd:TIGR00618 1004 DAIREGSKMIGIISHVPEFRER------IPHRILVKKTNAGSHV 1041
|
|
| |
