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Conserved domains on  [gi|759404739|ref|WP_043129207|]
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YraN family protein [Photobacterium leiognathi]

Protein Classification

YraN family protein( domain architecture ID 10013993)

YraN family protein is a predicted endonuclease of the the PDDEXK nuclease superfamily

CATH:  3.40.960.10
Gene Ontology:  GO:0003677|GO:0004519
PubMed:  16011798|15972856
SCOP:  3000104

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12497 PRK12497
YraN family protein;
1-111 1.17e-48

YraN family protein;


:

Pssm-ID: 237119  Cd Length: 119  Bit Score: 151.11  E-value: 1.17e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   1 MNKRQQGQAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTAL 80
Cdd:PRK12497   3 MKKRQLGAAGEDLAARYLESKGLRILARNFRCRFGEIDLIARDGDTLVFVEVKTRRSDRFGGAAEAVTPRKQRRLRRAAQ 82

                         90       100       110
                 ....*....|....*....|....*....|.
gi 759404739  81 FWLQKNGFSIDqTECRFDVVTIEGQEHHIEW 111
Cdd:PRK12497  83 LWLARHPSLAD-LPCRFDVVAIGGPGPEIEH 112
 
Name Accession Description Interval E-value
PRK12497 PRK12497
YraN family protein;
1-111 1.17e-48

YraN family protein;


Pssm-ID: 237119  Cd Length: 119  Bit Score: 151.11  E-value: 1.17e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   1 MNKRQQGQAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTAL 80
Cdd:PRK12497   3 MKKRQLGAAGEDLAARYLESKGLRILARNFRCRFGEIDLIARDGDTLVFVEVKTRRSDRFGGAAEAVTPRKQRRLRRAAQ 82

                         90       100       110
                 ....*....|....*....|....*....|.
gi 759404739  81 FWLQKNGFSIDqTECRFDVVTIEGQEHHIEW 111
Cdd:PRK12497  83 LWLARHPSLAD-LPCRFDVVAIGGPGPEIEH 112
YraN COG0792
Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 ...
 2-115 1.22e-48

Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family [Replication, recombination and repair];


Pssm-ID: 440555  Cd Length: 116  Bit Score: 151.05  E-value: 1.22e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   2 NKRQQGQAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTALF 81
Cdd:COG0792    1 RRRELGRRGEDLAARYLERKGYRILARNWRCRGGEIDLIARDGDTLVFVEVKTRRSARFGGPAEAVTPRKQRRLRRAAEA 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 759404739  82 WLQKNGfSIDQTECRFDVVTIEGQEHHIEWHTNI 115
Cdd:COG0792   81 YLARHP-GLADLPVRFDVVAVTGDGREIEHIENA 113
UPF0102 pfam02021
Uncharacterized protein family UPF0102; The function of this family is unknown.
 10-102 8.78e-42

Uncharacterized protein family UPF0102; The function of this family is unknown.


Pssm-ID: 460416 [Multi-domain]  Cd Length: 92  Bit Score: 132.91  E-value: 8.78e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   10 YEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTALFWLQKNGFS 89
Cdd:pfam02021   1 GEDLAARYLEAKGYRILARNWRCRFGEIDIIARDGDTLVFVEVKTRSSTRFGSPAEAVTPRKQRRLRRAAAAYLAEHPLY 80

                          90
                  ....*....|...
gi 759404739   90 IDqTECRFDVVTI 102
Cdd:pfam02021  81 AD-LPCRFDVIAV 92
TIGR00252 TIGR00252
TIGR00252 family protein; the scores for Mycobacterium tuberculosis and Treponema pallidum are ...
 3-116 6.14e-32

TIGR00252 family protein; the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment [Hypothetical proteins, Conserved]


Pssm-ID: 129354  Cd Length: 119  Bit Score: 108.84  E-value: 6.14e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739    3 KRQQGQAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTALFW 82
Cdd:TIGR00252   5 KTQLGQAGESQARAWLEQKGLKFIAANWNSPWGEIDLIMHDTKTIAFVEVRTRSGGNYGGALLSVNARKQEKILQTANLW 84

                          90       100       110
                  ....*....|....*....|....*....|....
gi 759404739   83 LQKNGFSIDQTECRFDVVTIEGQEHHIEWHTNIL 116
Cdd:TIGR00252  85 LASQNPSWSDWNCRFDVMAFFPTGENAEWIFANL 118
PoNe_Nuclease cd20736
Polymorphic Nuclease effector (PoNe) co-occurring with an N-terminal nuclease domain; The ...
 11-83 3.99e-21

Polymorphic Nuclease effector (PoNe) co-occurring with an N-terminal nuclease domain; The DNase toxin domain called PoNe (Polymorphic Nuclease effector) belongs to a diverse superfamily of PD-(D/E)xK phosphodiesterases, and is associated with several toxin delivery systems including type V, type VI, and type VII. PoNe toxicity is antagonized by cognate immunity proteins (PoNi) containing DUF1911 and DUF1910 domains. This subfamily contains proteins with PoNe domains that typically co-occur with nuclease N-terminal domains such as endonucleases involved in methyl-directed DNA mismatch repair in gram negative bacteria.


Pssm-ID: 410645 [Multi-domain]  Cd Length: 80  Bit Score: 79.97  E-value: 3.99e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 759404739  11 EQMAEQFLSRHRLKLIERNFSCRSGEIDLIMR--QGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTALFWL 83
Cdd:cd20736    6 EDIAARYLREKGYRILERNYRGGGGEIDLIARdpETGTIVFVEVKTRRSDKFGHPGEAVTRAKQRRLIKAALEYL 80
 
Name Accession Description Interval E-value
PRK12497 PRK12497
YraN family protein;
1-111 1.17e-48

YraN family protein;


Pssm-ID: 237119  Cd Length: 119  Bit Score: 151.11  E-value: 1.17e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   1 MNKRQQGQAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTAL 80
Cdd:PRK12497   3 MKKRQLGAAGEDLAARYLESKGLRILARNFRCRFGEIDLIARDGDTLVFVEVKTRRSDRFGGAAEAVTPRKQRRLRRAAQ 82

                         90       100       110
                 ....*....|....*....|....*....|.
gi 759404739  81 FWLQKNGFSIDqTECRFDVVTIEGQEHHIEW 111
Cdd:PRK12497  83 LWLARHPSLAD-LPCRFDVVAIGGPGPEIEH 112
YraN COG0792
Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 ...
 2-115 1.22e-48

Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family [Replication, recombination and repair];


Pssm-ID: 440555  Cd Length: 116  Bit Score: 151.05  E-value: 1.22e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   2 NKRQQGQAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTALF 81
Cdd:COG0792    1 RRRELGRRGEDLAARYLERKGYRILARNWRCRGGEIDLIARDGDTLVFVEVKTRRSARFGGPAEAVTPRKQRRLRRAAEA 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 759404739  82 WLQKNGfSIDQTECRFDVVTIEGQEHHIEWHTNI 115
Cdd:COG0792   81 YLARHP-GLADLPVRFDVVAVTGDGREIEHIENA 113
UPF0102 pfam02021
Uncharacterized protein family UPF0102; The function of this family is unknown.
 10-102 8.78e-42

Uncharacterized protein family UPF0102; The function of this family is unknown.


Pssm-ID: 460416 [Multi-domain]  Cd Length: 92  Bit Score: 132.91  E-value: 8.78e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   10 YEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTALFWLQKNGFS 89
Cdd:pfam02021   1 GEDLAARYLEAKGYRILARNWRCRFGEIDIIARDGDTLVFVEVKTRSSTRFGSPAEAVTPRKQRRLRRAAAAYLAEHPLY 80

                          90
                  ....*....|...
gi 759404739   90 IDqTECRFDVVTI 102
Cdd:pfam02021  81 AD-LPCRFDVIAV 92
TIGR00252 TIGR00252
TIGR00252 family protein; the scores for Mycobacterium tuberculosis and Treponema pallidum are ...
 3-116 6.14e-32

TIGR00252 family protein; the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment [Hypothetical proteins, Conserved]


Pssm-ID: 129354  Cd Length: 119  Bit Score: 108.84  E-value: 6.14e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739    3 KRQQGQAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTALFW 82
Cdd:TIGR00252   5 KTQLGQAGESQARAWLEQKGLKFIAANWNSPWGEIDLIMHDTKTIAFVEVRTRSGGNYGGALLSVNARKQEKILQTANLW 84

                          90       100       110
                  ....*....|....*....|....*....|....
gi 759404739   83 LQKNGFSIDQTECRFDVVTIEGQEHHIEWHTNIL 116
Cdd:TIGR00252  85 LASQNPSWSDWNCRFDVMAFFPTGENAEWIFANL 118
PRK14673 PRK14673
hypothetical protein; Provisional
 2-111 3.70e-31

hypothetical protein; Provisional


Pssm-ID: 237786  Cd Length: 137  Bit Score: 107.45  E-value: 3.70e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   2 NKRQQGQAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQ-GKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTAL 80
Cdd:PRK14673  24 STRAVGAAFEDRALAFLQRAGLALVARNYRCRGGEIDLVMRErDGTLVFVEVRARASRRFGGAAASIGARKQRRLVAAAL 103

                         90       100       110
                 ....*....|....*....|....*....|..
gi 759404739  81 -FWLQKNGfsidQTECRFDVVTIEGQEhhIEW 111
Cdd:PRK14673 104 hFLARHGG----APACRFDVVAFEGGR--LEW 129
PRK14675 PRK14675
hypothetical protein; Provisional
 7-107 3.05e-26

hypothetical protein; Provisional


Pssm-ID: 173138  Cd Length: 125  Bit Score: 94.52  E-value: 3.05e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   7 GQAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTALFWLQKN 86
Cdd:PRK14675  11 GEIGESIAVTYLKGLRYKIVERNFRCRCGEIDIIARDGKTLVFVEVKTRKNYAYGVPQLAVTPFKQRQISKAALTWLAKK 90

                         90       100
                 ....*....|....*....|.
gi 759404739  87 GfsIDQTECRFDVVTIEGQEH 107
Cdd:PRK14675  91 K--LLDAEARFDVIAITQRDH 109
PRK14681 PRK14681
hypothetical protein; Provisional
 4-110 4.26e-22

hypothetical protein; Provisional


Pssm-ID: 237787  Cd Length: 158  Bit Score: 84.97  E-value: 4.26e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   4 RQQGQAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGK-CFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTALFW 82
Cdd:PRK14681  43 KQIGALGEQYAAAWLEEHGWTTLSRNWHCRYGELDIVALNPEyTIVFVEVKTRRSMHYGYPQEAVTAAKQHNLRKAACDW 122

                         90       100       110
                 ....*....|....*....|....*....|...
gi 759404739  83 LQKNGFSIDQTECRFDVVTIEGQE-----HHIE 110
Cdd:PRK14681 123 LLERRNRVPHIGVRFDVVTVVVRVgrplvHHIE 155
PoNe_Nuclease cd20736
Polymorphic Nuclease effector (PoNe) co-occurring with an N-terminal nuclease domain; The ...
 11-83 3.99e-21

Polymorphic Nuclease effector (PoNe) co-occurring with an N-terminal nuclease domain; The DNase toxin domain called PoNe (Polymorphic Nuclease effector) belongs to a diverse superfamily of PD-(D/E)xK phosphodiesterases, and is associated with several toxin delivery systems including type V, type VI, and type VII. PoNe toxicity is antagonized by cognate immunity proteins (PoNi) containing DUF1911 and DUF1910 domains. This subfamily contains proteins with PoNe domains that typically co-occur with nuclease N-terminal domains such as endonucleases involved in methyl-directed DNA mismatch repair in gram negative bacteria.


Pssm-ID: 410645 [Multi-domain]  Cd Length: 80  Bit Score: 79.97  E-value: 3.99e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 759404739  11 EQMAEQFLSRHRLKLIERNFSCRSGEIDLIMR--QGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTALFWL 83
Cdd:cd20736    6 EDIAARYLREKGYRILERNYRGGGGEIDLIARdpETGTIVFVEVKTRRSDKFGHPGEAVTRAKQRRLIKAALEYL 80
PRK14685 PRK14685
hypothetical protein; Provisional
 4-108 5.46e-20

hypothetical protein; Provisional


Pssm-ID: 173148  Cd Length: 177  Bit Score: 80.21  E-value: 5.46e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   4 RQQGQAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTALFWL 83
Cdd:PRK14685  42 QRCGQAYESAALRWLARQGLRPLARNLRCRAGEIDLAMRDGEVLVLVEVRARAHAGYGGAAASIGASKQGRLARAAALLL 121

                         90       100
                 ....*....|....*....|....*...
gi 759404739  84 Q---KNGFSIDQTECRFDVVTIEGQEHH 108
Cdd:PRK14685 122 PvllRRHWPGAPPPVRFDVVAFEAGRPH 149
PRK14674 PRK14674
hypothetical protein; Provisional
 4-100 3.78e-19

hypothetical protein; Provisional


Pssm-ID: 184788  Cd Length: 133  Bit Score: 76.55  E-value: 3.78e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   4 RQQGQAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTALFWL 83
Cdd:PRK14674   5 QQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTAMRFL 84

                         90
                 ....*....|....*..
gi 759404739  84 QKNGfSIDQTECRFDVV 100
Cdd:PRK14674  85 QRYP-SYQDFYCRFDVI 100
PRK14687 PRK14687
hypothetical protein; Provisional
 3-100 1.54e-18

hypothetical protein; Provisional


Pssm-ID: 237788  Cd Length: 173  Bit Score: 76.21  E-value: 1.54e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   3 KRQQGQAYEQMAEQFLSRHRLKLIERNFS-CRSGEIDLIM----RQGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKR 77
Cdd:PRK14687  29 KQRQGGGFEQLACEFLQEQGLILIARNWQqPKVGELDLVMlekgQAWSTLVFAEVRQRKLSGFGDAAASVTAGKQRKIIK 108

                         90       100
                 ....*....|....*....|...
gi 759404739  78 TALFWLQKNGFSIDqTECRFDVV 100
Cdd:PRK14687 109 TARYFLRQHPEYAD-YECRFDVI 130
PRK14682 PRK14682
hypothetical protein; Provisional
 1-114 2.37e-18

hypothetical protein; Provisional


Pssm-ID: 173145  Cd Length: 117  Bit Score: 74.32  E-value: 2.37e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   1 MNKRQQGQAYEQMAEQFLSRHRLKLIERNFSCRS-GEIDLIMRQGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTA 79
Cdd:PRK14682   1 MQTIEIGNKAELQACKFLHTQALEILAHNFKALPyGEIDIIALDKDTLVFIEVKYRSKTKFAQAEEMLTYSKQQKLVNSA 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 759404739  80 LFWLQKNGfSIDQTECRFDVVTIegQEHHIEWHTN 114
Cdd:PRK14682  81 SIYLQHNP-QYQDYQCRFDLIAI--NESNINWIKN 112
PRK14678 PRK14678
hypothetical protein; Provisional
 3-102 4.62e-17

hypothetical protein; Provisional


Pssm-ID: 173141  Cd Length: 120  Bit Score: 71.06  E-value: 4.62e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   3 KRQQGQAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKYRTHRHfgsASEAVNWHKQQKLKRTALFW 82
Cdd:PRK14678   5 KRRLGDWGEQVAAAYLERCGYTIIARNWRCRAGEIDIVAREGDQLVFVEVRTRRDQD---ALESITLAKRQRLVALAYHY 81

                         90       100
                 ....*....|....*....|
gi 759404739  83 LQKNGFSIDqTECRFDVVTI 102
Cdd:PRK14678  82 LAAHDLPAT-TPWRIDVIAL 100
PRK14684 PRK14684
hypothetical protein; Provisional
 11-116 7.82e-15

hypothetical protein; Provisional


Pssm-ID: 173147  Cd Length: 120  Bit Score: 65.44  E-value: 7.82e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739  11 EQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTALFWLQKNGFsI 90
Cdd:PRK14684  13 EKTACRYLQKQGLSFITKNFRYKQGEIDLIMSDQSMLVFIEVRYRRFSDFIHPVATVTPLKQRRLIKTALHYLQKHRL-L 91

                         90       100
                 ....*....|....*....|....*.
gi 759404739  91 DQTECRFDVVTIEGqEHHIEWHTNIL 116
Cdd:PRK14684  92 DKISCRFDIVGITA-DRQITWIKNAI 116
PRK14680 PRK14680
hypothetical protein; Provisional
 7-114 1.66e-12

hypothetical protein; Provisional


Pssm-ID: 173143  Cd Length: 134  Bit Score: 59.46  E-value: 1.66e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   7 GQAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTALFWL-QK 85
Cdd:PRK14680   9 GQHGEDAAAALLQRTGHRILARNWRHGGLELDIVCEDGDTIVFVEVKTRAAHGLTSPTDALTHSKRHRLIRAARAWLaAH 88

                         90       100       110
                 ....*....|....*....|....*....|.
gi 759404739  86 NGFSidqTECRFDVVTI--EGQEHHIEWHTN 114
Cdd:PRK14680  89 DAWD---KPCRFDLVCVtqRGATLTLEHYTH 116
PRK14689 PRK14689
hypothetical protein; Provisional
 1-111 2.80e-12

hypothetical protein; Provisional


Pssm-ID: 173152  Cd Length: 124  Bit Score: 58.59  E-value: 2.80e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   1 MNKRQQGQAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKYRT---HRHFGSAseAVNWHKQQKLKR 77
Cdd:PRK14689   5 MKSQALGAWAEERVLRLLQRRGWRLLDRNWSCRWGELDLVLEKQQRLLVVEVKGRRrrgLDGWGLA--AFHPRKRRRLAR 82

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 759404739  78 TALFWLQKNGFSIDQT-ECRFDVVTIEGQEHHIEW 111
Cdd:PRK14689  83 AINCWRAAHPYSAEHLlEVVLALVPLPPSRGTVRW 117
PRK14686 PRK14686
hypothetical protein; Provisional
 7-102 1.01e-11

hypothetical protein; Provisional


Pssm-ID: 184791  Cd Length: 119  Bit Score: 57.08  E-value: 1.01e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   7 GQAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTALFWLQKN 86
Cdd:PRK14686   8 GKEGEDLAVEFLIKKGYTILERNYRFQKAEIDIIAQKGNILVIVEVKTRSSSDFGNPQDFVKPKKIQLLVKAVNHYIEDK 87

                         90
                 ....*....|....*.
gi 759404739  87 GFSIdqtECRFDVVTI 102
Cdd:PRK14686  88 DLDV---EIRFDIIAI 100
PRK14688 PRK14688
hypothetical protein; Provisional
 3-103 3.21e-11

hypothetical protein; Provisional


Pssm-ID: 184792  Cd Length: 121  Bit Score: 55.82  E-value: 3.21e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   3 KRQQGQAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKYRTHRHFGSASEAVNWHKQQKLKRTALFW 82
Cdd:PRK14688   5 RKETGEFGEKLAAEYLKGMGYSIIQTNCRLPEGEIDIVGQDGEYLVFIEVRTKRRLGYGLPAESVTPRKKAHLMASAESY 84

                         90       100
                 ....*....|....*....|.
gi 759404739  83 LQKngFSIDQTECRFDVVTIE 103
Cdd:PRK14688  85 IQK--HRLEHFPCRIDFVSVD 103
PRK14679 PRK14679
hypothetical protein; Provisional
 26-100 4.82e-11

hypothetical protein; Provisional


Pssm-ID: 173142  Cd Length: 128  Bit Score: 55.68  E-value: 4.82e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 759404739  26 IERNFSCRSGEIDLIMRQGKCFVFIEVKYRTHRHfgSASEAVNWHKQQKLKRTALFWLQKNGFSIDQTeCRFDVV 100
Cdd:PRK14679  37 LARRFAAAGGEIDLIVRRGRTIAFVEVKARATLD--AAATAIDARKRARFSRAARAWLARHPLAAGAT-LRADAV 108
PRK14677 PRK14677
hypothetical protein; Provisional
 8-107 1.43e-08

hypothetical protein; Provisional


Pssm-ID: 184789  Cd Length: 107  Bit Score: 48.75  E-value: 1.43e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   8 QAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKyrTHRHFGSASEAVNWHKQQKLKRTALFWLQKNG 87
Cdd:PRK14677   4 KEAEELACKFLKKKGYKILERNYRTKYGEIDIVARDGREIVFVEVK--SGSGKVDPLERIDLKKVRNLEQTARFYMIQNK 81

                         90       100
                 ....*....|....*....|..
gi 759404739  88 FsidQTECRFDV--VTIEGQEH 107
Cdd:PRK14677  82 L---KGPARVDFvrVTPEGIDH 100
PRK14676 PRK14676
hypothetical protein; Provisional
 7-104 2.38e-07

hypothetical protein; Provisional


Pssm-ID: 173139  Cd Length: 117  Bit Score: 45.71  E-value: 2.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759404739   7 GQAYEQMAEQFLSRHRLKLIERNFSCRSGEIDLIMRQGKCFVFIEVKyrTHRHFGSASEAVNWHKQQKLKRTALFWLQkn 86
Cdd:PRK14676  10 GQTAEEAVARIYDRSGRPVAARRWRGVSGEIDLIAREGAEVIFIEVK--KSKSHAAAAARLSRRQMDRIYGAASEFLA-- 85

                         90
                 ....*....|....*....
gi 759404739  87 GFSIDQ-TECRFDVVTIEG 104
Cdd:PRK14676  86 GEPRGQlTASRFDVALVDA 104
NERD pfam08378
Nuclease-related domain; The nuclease-related domain (NERD) is found in a range of bacterial ...
 7-74 7.56e-03

Nuclease-related domain; The nuclease-related domain (NERD) is found in a range of bacterial as well as archaeal and plant proteins. It has distant similarity to endonucleases (hence its name) and its predicted secondary structure is helix - sheet - sheet - sheet - sheet - weak sheet/long loop - helix - sheet - sheet. The majority of NERD-containing proteins are single-domain, but in several cases proteins containing NERD have additional domains which in 75% of cases are involved in DNA processing.


Pssm-ID: 462454  Cd Length: 108  Bit Score: 33.58  E-value: 7.56e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 759404739    7 GQAYEQMAEQFLSRHRLKLIERNFSCR----SGEIDLIMRQGKCFVFIEVKYRTHRHFGSASEavNWHKQQK 74
Cdd:pfam08378   2 GAKGERRVAEYLKLPGGYIVLHNLRLPpgtgTAEIDHLVISPNGIFVIEVKNYSGWIFGDENG--QWTQKIG 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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