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Conserved domains on  [gi|759600645|ref|WP_043318928|]
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LLM class flavin-dependent oxidoreductase [Pseudomonas sp. PI1]

Protein Classification

LLM class flavin-dependent oxidoreductase( domain architecture ID 10023993)

LLM (luciferase-like monooxygenase) class flavin-dependent oxidoreductase transfers one oxygen atom of an oxygen molecule to a substrate while reducing the other oxygen atom to water

CATH:  3.20.20.30
EC:  1.-.-.-
Gene Ontology:  GO:0010181|GO:0016491
PubMed:  24361254|33460580
SCOP:  3000585

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FMN_nitrolo TIGR03860
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a ...
8-429 0e+00

FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity]


:

Pssm-ID: 274819 [Multi-domain]  Cd Length: 422  Bit Score: 572.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645    8 NLFeMNCVSHiVHGLWAHPENQRHRFNDIDYWTELAQLLEHGTFDGVFLADVVGVYDRfrggPETALREAVQVPSNDPLL 87
Cdd:TIGR03860   2 GAF-LNGVGH-HPGLWRHPRARADAYLDLDYWTELARTAERGKFDALFFADVLGVYDV----PDAALRRAAQLPRFEPLT 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645   88 VIPAMAAVTRNLGFGATFSTTYEPPFAFARRMSTLDHLTRGRVGWNIVTSYLPNAARNFGLDDEVPHDRRYEIADEYLDV 167
Cdd:TIGR03860  76 LLSALAAVTEHIGLGATASTTYEEPYNLARRFASLDHLSGGRAGWNIVTSYLDSAARNFGLDEHPPHDERYERAEEFVDV 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  168 LYKLWEgSWDDDAVIADRQRRIYTDPAKVRYIDHVGEHFRVAGPHLCQPSRQRTPVLFQATGSPAGTEFAGRHAEVVFTG 247
Cdd:TIGR03860 156 VYKLWD-SWEDDAFVRDKASGVFADPAKVHPINHKGKHFSVRGPLNIPRSPQGTPVLFQAGSSERGREFAARHAEAVFTA 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  248 GPTPAAVRRNIAHMRERARAHGRDPAGIKFIVQAAVIVGRNDLEVQAKLEDYRRLQSLDGALAHMQS--GVDLAAFPAHT 325
Cdd:TIGR03860 235 QPTLEDAQAFYADIKARAAAAGRDPDDVKILPGITPIVGRTEAEARAKYAELQDLISPEGGLALLSGwtGIDLSQYDLDA 314
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  326 PLAELPGGGPWAAL------LASDPQATVGQLVKRLGGFDEGRFFVaGTPKVVADEIEKWLDEDGIDGINLRQFLTPHTA 399
Cdd:TIGR03860 315 PLPDLPTEAGQKSRfdlileLARRENLTLRQLALRLAGGRGHPVFV-GTPEQVADQLEEWFEEGAADGFNLMPPVLPGGL 393
                         410       420       430
                  ....*....|....*....|....*....|
gi 759600645  400 RDFIELVVPEMRRRGRFREAYnDGETLRER 429
Cdd:TIGR03860 394 EDFVDLVVPELQRRGLFRTEY-EGGTLREH 422
 
Name Accession Description Interval E-value
FMN_nitrolo TIGR03860
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a ...
8-429 0e+00

FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 274819 [Multi-domain]  Cd Length: 422  Bit Score: 572.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645    8 NLFeMNCVSHiVHGLWAHPENQRHRFNDIDYWTELAQLLEHGTFDGVFLADVVGVYDRfrggPETALREAVQVPSNDPLL 87
Cdd:TIGR03860   2 GAF-LNGVGH-HPGLWRHPRARADAYLDLDYWTELARTAERGKFDALFFADVLGVYDV----PDAALRRAAQLPRFEPLT 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645   88 VIPAMAAVTRNLGFGATFSTTYEPPFAFARRMSTLDHLTRGRVGWNIVTSYLPNAARNFGLDDEVPHDRRYEIADEYLDV 167
Cdd:TIGR03860  76 LLSALAAVTEHIGLGATASTTYEEPYNLARRFASLDHLSGGRAGWNIVTSYLDSAARNFGLDEHPPHDERYERAEEFVDV 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  168 LYKLWEgSWDDDAVIADRQRRIYTDPAKVRYIDHVGEHFRVAGPHLCQPSRQRTPVLFQATGSPAGTEFAGRHAEVVFTG 247
Cdd:TIGR03860 156 VYKLWD-SWEDDAFVRDKASGVFADPAKVHPINHKGKHFSVRGPLNIPRSPQGTPVLFQAGSSERGREFAARHAEAVFTA 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  248 GPTPAAVRRNIAHMRERARAHGRDPAGIKFIVQAAVIVGRNDLEVQAKLEDYRRLQSLDGALAHMQS--GVDLAAFPAHT 325
Cdd:TIGR03860 235 QPTLEDAQAFYADIKARAAAAGRDPDDVKILPGITPIVGRTEAEARAKYAELQDLISPEGGLALLSGwtGIDLSQYDLDA 314
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  326 PLAELPGGGPWAAL------LASDPQATVGQLVKRLGGFDEGRFFVaGTPKVVADEIEKWLDEDGIDGINLRQFLTPHTA 399
Cdd:TIGR03860 315 PLPDLPTEAGQKSRfdlileLARRENLTLRQLALRLAGGRGHPVFV-GTPEQVADQLEEWFEEGAADGFNLMPPVLPGGL 393
                         410       420       430
                  ....*....|....*....|....*....|
gi 759600645  400 RDFIELVVPEMRRRGRFREAYnDGETLRER 429
Cdd:TIGR03860 394 EDFVDLVVPELQRRGLFRTEY-EGGTLREH 422
Nitrilotriacetate_monoxgenase cd01095
nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin ...
20-416 5.28e-98

nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2.


Pssm-ID: 238528 [Multi-domain]  Cd Length: 358  Bit Score: 298.47  E-value: 5.28e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  20 HGLWAHPENqRHRFNDIDYWTELAQLLEHGTFDGVFLADVVGVYDRFRGGPETALreavqvpsnDPLLVIPAMAAVTRNL 99
Cdd:cd01095   14 AAAWRHPAP-PDASIDFDHYVRLARTAERAKFDAVFLADGLAIRALSRPHPVARL---------EPLTLLAALAAVTERI 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645 100 GFGATFSTTYEPPFAFARRMSTLDHLTRGRVGWNIVTSYLPNAARNFGLDDEVPHDRRYEIADEYLDVLYKLWEgSWDDD 179
Cdd:cd01095   84 GLVATASTTYNEPYHLARRFASLDHISGGRAGWNVVTSANPGEARNFGRDEHPEHDERYARAEEFVEVVKGLWD-SWEDD 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645 180 AVIADRQRRIYTDPAKVRYIDHVGEHFRVAGPHLCQPSRQRTPVLFQATGSPAGTEFAGRHAEVVFTGGPTPAAVRRNIA 259
Cdd:cd01095  163 ALVRDKASGRFADPAKVHPLDHVGDHFGVRGPLNGPRSPQGRPVIVQAGSSEAGREFAARHAEAVFTAQQTLEEAQAFYA 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645 260 HMRERARAHGRDpagikfivqaavivgRNDLEVQAKLEDYRRLQSLdgalahmqsgvdlaafpahtPLAELPGGGPWAAL 339
Cdd:cd01095  243 DVKARAAAAGRL---------------DPPPPDLPDLGSRLSASRL--------------------LLADLLARGGLHRR 287
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 759600645 340 LASDPQatvgQLVKRLGGfdEGRFFVAGTPKVVADEIEKWLDEDGIDGINLRQFLTPHTARDFIELVVPEMRRRGRF 416
Cdd:cd01095  288 EVGTAR----EVADRLER--AAGGGTVVGPEQIADELEEWFEAGAADGFNIMPPYLPGGLDDFVDLVVPELQRRGLF 358
SsuD COG2141
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase ...
47-412 6.40e-67

Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) [Coenzyme transport and metabolism, General function prediction only]; Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) is part of the Pathway/BioSystem: Pyrimidine degradation


Pssm-ID: 441744 [Multi-domain]  Cd Length: 301  Bit Score: 216.72  E-value: 6.40e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  47 EHGTFDGVFLADVVGVYdrfrggpetalreavQVPSNDPLLVIPAMAAVTRNLGFGA-TFSTTYEPPFAFARRMSTLDHL 125
Cdd:COG2141    2 ERLGFDRVWVADHHFPP---------------GGASPDPWVLLAALAAATSRIRLGTgVVVLPLRHPLVVAEQFATLDHL 66
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645 126 TRGRVGWNIVTSYLPNAARNFGLDdevpHDRRYEIADEYLDVLYKLWEGswdddaviadrqrriytdpakvRYIDHVGEH 205
Cdd:COG2141   67 SGGRLDLGVGRGWGPDEFAAFGLD----HDERYERFEEALEVLRRLWTG----------------------EPVTFEGEF 120
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645 206 FRVAGPHLCQPSRQRT-PVLFQATGSPAGTEFAGRHAEVVFTGGPTPAAVRRNIAHMRERARAHGRDPAGIKFIVQAAVI 284
Cdd:COG2141  121 FTVEGARLVPRPVQGPhPPIWIAGSSPAGARLAARLGDGVFTAGGTPEELAEAIAAYREAAAAAGRDPDDLRVSVGLHVI 200
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645 285 VGRNDLEVQAKLEDYRRlqsldgALAHMQSGVDLAAFPAHTPLAElpgggpwaallasdpqatvgQLVKRLGgfdegrFF 364
Cdd:COG2141  201 VAETDEEARERARPYLR------ALLALPRGRPPEEAEEGLTVRE--------------------DLLELLG------AA 248
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 759600645 365 VAGTPKVVADEIEKWLDEDGIDGINLRQFLTPHTAR-----DFIELVVPEMRR 412
Cdd:COG2141  249 LVGTPEQVAERLEELAEAAGVDEFLLQFPGLDPEDRlrsleLFAEEVLPLLRR 301
Bac_luciferase pfam00296
Luciferase-like monooxygenase;
35-377 2.36e-43

Luciferase-like monooxygenase;


Pssm-ID: 425589 [Multi-domain]  Cd Length: 313  Bit Score: 155.21  E-value: 2.36e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645   35 DIDYWTELAQLLEHGTFDGVFLADVVGVYDRFrggpetalreavqvpsnDPLLVIPAMAAVTRNLGFGATFSTTYE-PPF 113
Cdd:pfam00296  21 SLRYLVELARAAEELGFDGVWLAEHHGGPGGP-----------------DPFVVLAALAAATSRIRLGTAVVPLPTrHPA 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  114 AFARRMSTLDHLTRGRVGWNIVTSYLPNAARNFGlddeVPHDRRYEIADEYLDVLYKLWEGswdddaviadrqrriytdp 193
Cdd:pfam00296  84 VLAEQAATLDHLSGGRFDLGLGTGGPAVEFRRFG----VDHDERYARLREFLEVLRRLWRG------------------- 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  194 akvRYIDHVGEHFRVAGPHLCQPSRQRTPVLFQATgSPAGTEFAGRHAEVVFTGGPTP-AAVRRNIAHMRERARAHGRDP 272
Cdd:pfam00296 141 ---EPVDFEGEFFTLDGAFLLPRPVQGIPVWVAAS-SPAMLELAARHADGLLLWGFAPpAAAAELIERVRAGAAEAGRDP 216
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  273 AGIKFIVQAAVIVGRNDLEVQAKLEDYRRLQSLDGALAHMQsGVDLAAFPAHtplaELPGGGPWAALLASDPQATVgqlv 352
Cdd:pfam00296 217 ADIRVGASLTVIVADTEEEARAEARALIAGLPFYRMDSEGA-GRLAEAREIG----EEYDAGDWAGAADAVPDELV---- 287
                         330       340
                  ....*....|....*....|....*
gi 759600645  353 krlggfdeGRFFVAGTPKVVADEIE 377
Cdd:pfam00296 288 --------RAFALVGTPEQVAERLA 304
PRK00719 PRK00719
alkanesulfonate monooxygenase; Provisional
84-285 1.18e-20

alkanesulfonate monooxygenase; Provisional


Pssm-ID: 234821 [Multi-domain]  Cd Length: 378  Bit Score: 93.09  E-value: 1.18e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  84 DPLLVIPAMAAVTRNLGFGATFSTTYEPPFAFARRMSTLDHLTRGRVGWNIVTSYLP--NAARNFGLDdevpHDRRYEIA 161
Cdd:PRK00719  55 DAWLVAASLIPVTQRLKFLVALRPGLMSPTVAARMAATLDRLSNGRLLINLVTGGDPaeLAGDGLFLD----HDERYEAS 130
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645 162 DEYLDVLYKLWEGSwdddaviadrqrriytdpakvrYIDHVGEHFRVAGPHLCQPSRQRT-PVLFQATGSPAGTEFAGRH 240
Cdd:PRK00719 131 AEFLRIWRRLLEGE----------------------TVDFEGKHIQVKGAKLLFPPVQQPyPPLYFGGSSDAAQELAAEQ 188
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 759600645 241 AEVVFTGGPTPAAVRRNIAHMRERARAHGRDpagIKFIVQAAVIV 285
Cdd:PRK00719 189 VDLYLTWGEPPAQVKEKIEQVRAKAAAHGRK---VRFGIRLHVIV 230
 
Name Accession Description Interval E-value
FMN_nitrolo TIGR03860
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a ...
8-429 0e+00

FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 274819 [Multi-domain]  Cd Length: 422  Bit Score: 572.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645    8 NLFeMNCVSHiVHGLWAHPENQRHRFNDIDYWTELAQLLEHGTFDGVFLADVVGVYDRfrggPETALREAVQVPSNDPLL 87
Cdd:TIGR03860   2 GAF-LNGVGH-HPGLWRHPRARADAYLDLDYWTELARTAERGKFDALFFADVLGVYDV----PDAALRRAAQLPRFEPLT 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645   88 VIPAMAAVTRNLGFGATFSTTYEPPFAFARRMSTLDHLTRGRVGWNIVTSYLPNAARNFGLDDEVPHDRRYEIADEYLDV 167
Cdd:TIGR03860  76 LLSALAAVTEHIGLGATASTTYEEPYNLARRFASLDHLSGGRAGWNIVTSYLDSAARNFGLDEHPPHDERYERAEEFVDV 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  168 LYKLWEgSWDDDAVIADRQRRIYTDPAKVRYIDHVGEHFRVAGPHLCQPSRQRTPVLFQATGSPAGTEFAGRHAEVVFTG 247
Cdd:TIGR03860 156 VYKLWD-SWEDDAFVRDKASGVFADPAKVHPINHKGKHFSVRGPLNIPRSPQGTPVLFQAGSSERGREFAARHAEAVFTA 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  248 GPTPAAVRRNIAHMRERARAHGRDPAGIKFIVQAAVIVGRNDLEVQAKLEDYRRLQSLDGALAHMQS--GVDLAAFPAHT 325
Cdd:TIGR03860 235 QPTLEDAQAFYADIKARAAAAGRDPDDVKILPGITPIVGRTEAEARAKYAELQDLISPEGGLALLSGwtGIDLSQYDLDA 314
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  326 PLAELPGGGPWAAL------LASDPQATVGQLVKRLGGFDEGRFFVaGTPKVVADEIEKWLDEDGIDGINLRQFLTPHTA 399
Cdd:TIGR03860 315 PLPDLPTEAGQKSRfdlileLARRENLTLRQLALRLAGGRGHPVFV-GTPEQVADQLEEWFEEGAADGFNLMPPVLPGGL 393
                         410       420       430
                  ....*....|....*....|....*....|
gi 759600645  400 RDFIELVVPEMRRRGRFREAYnDGETLRER 429
Cdd:TIGR03860 394 EDFVDLVVPELQRRGLFRTEY-EGGTLREH 422
Nitrilotriacetate_monoxgenase cd01095
nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin ...
20-416 5.28e-98

nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2.


Pssm-ID: 238528 [Multi-domain]  Cd Length: 358  Bit Score: 298.47  E-value: 5.28e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  20 HGLWAHPENqRHRFNDIDYWTELAQLLEHGTFDGVFLADVVGVYDRFRGGPETALreavqvpsnDPLLVIPAMAAVTRNL 99
Cdd:cd01095   14 AAAWRHPAP-PDASIDFDHYVRLARTAERAKFDAVFLADGLAIRALSRPHPVARL---------EPLTLLAALAAVTERI 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645 100 GFGATFSTTYEPPFAFARRMSTLDHLTRGRVGWNIVTSYLPNAARNFGLDDEVPHDRRYEIADEYLDVLYKLWEgSWDDD 179
Cdd:cd01095   84 GLVATASTTYNEPYHLARRFASLDHISGGRAGWNVVTSANPGEARNFGRDEHPEHDERYARAEEFVEVVKGLWD-SWEDD 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645 180 AVIADRQRRIYTDPAKVRYIDHVGEHFRVAGPHLCQPSRQRTPVLFQATGSPAGTEFAGRHAEVVFTGGPTPAAVRRNIA 259
Cdd:cd01095  163 ALVRDKASGRFADPAKVHPLDHVGDHFGVRGPLNGPRSPQGRPVIVQAGSSEAGREFAARHAEAVFTAQQTLEEAQAFYA 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645 260 HMRERARAHGRDpagikfivqaavivgRNDLEVQAKLEDYRRLQSLdgalahmqsgvdlaafpahtPLAELPGGGPWAAL 339
Cdd:cd01095  243 DVKARAAAAGRL---------------DPPPPDLPDLGSRLSASRL--------------------LLADLLARGGLHRR 287
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 759600645 340 LASDPQatvgQLVKRLGGfdEGRFFVAGTPKVVADEIEKWLDEDGIDGINLRQFLTPHTARDFIELVVPEMRRRGRF 416
Cdd:cd01095  288 EVGTAR----EVADRLER--AAGGGTVVGPEQIADELEEWFEAGAADGFNIMPPYLPGGLDDFVDLVVPELQRRGLF 358
SsuD COG2141
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase ...
47-412 6.40e-67

Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) [Coenzyme transport and metabolism, General function prediction only]; Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) is part of the Pathway/BioSystem: Pyrimidine degradation


Pssm-ID: 441744 [Multi-domain]  Cd Length: 301  Bit Score: 216.72  E-value: 6.40e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  47 EHGTFDGVFLADVVGVYdrfrggpetalreavQVPSNDPLLVIPAMAAVTRNLGFGA-TFSTTYEPPFAFARRMSTLDHL 125
Cdd:COG2141    2 ERLGFDRVWVADHHFPP---------------GGASPDPWVLLAALAAATSRIRLGTgVVVLPLRHPLVVAEQFATLDHL 66
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645 126 TRGRVGWNIVTSYLPNAARNFGLDdevpHDRRYEIADEYLDVLYKLWEGswdddaviadrqrriytdpakvRYIDHVGEH 205
Cdd:COG2141   67 SGGRLDLGVGRGWGPDEFAAFGLD----HDERYERFEEALEVLRRLWTG----------------------EPVTFEGEF 120
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645 206 FRVAGPHLCQPSRQRT-PVLFQATGSPAGTEFAGRHAEVVFTGGPTPAAVRRNIAHMRERARAHGRDPAGIKFIVQAAVI 284
Cdd:COG2141  121 FTVEGARLVPRPVQGPhPPIWIAGSSPAGARLAARLGDGVFTAGGTPEELAEAIAAYREAAAAAGRDPDDLRVSVGLHVI 200
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645 285 VGRNDLEVQAKLEDYRRlqsldgALAHMQSGVDLAAFPAHTPLAElpgggpwaallasdpqatvgQLVKRLGgfdegrFF 364
Cdd:COG2141  201 VAETDEEARERARPYLR------ALLALPRGRPPEEAEEGLTVRE--------------------DLLELLG------AA 248
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 759600645 365 VAGTPKVVADEIEKWLDEDGIDGINLRQFLTPHTAR-----DFIELVVPEMRR 412
Cdd:COG2141  249 LVGTPEQVAERLEELAEAAGVDEFLLQFPGLDPEDRlrsleLFAEEVLPLLRR 301
Bac_luciferase pfam00296
Luciferase-like monooxygenase;
35-377 2.36e-43

Luciferase-like monooxygenase;


Pssm-ID: 425589 [Multi-domain]  Cd Length: 313  Bit Score: 155.21  E-value: 2.36e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645   35 DIDYWTELAQLLEHGTFDGVFLADVVGVYDRFrggpetalreavqvpsnDPLLVIPAMAAVTRNLGFGATFSTTYE-PPF 113
Cdd:pfam00296  21 SLRYLVELARAAEELGFDGVWLAEHHGGPGGP-----------------DPFVVLAALAAATSRIRLGTAVVPLPTrHPA 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  114 AFARRMSTLDHLTRGRVGWNIVTSYLPNAARNFGlddeVPHDRRYEIADEYLDVLYKLWEGswdddaviadrqrriytdp 193
Cdd:pfam00296  84 VLAEQAATLDHLSGGRFDLGLGTGGPAVEFRRFG----VDHDERYARLREFLEVLRRLWRG------------------- 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  194 akvRYIDHVGEHFRVAGPHLCQPSRQRTPVLFQATgSPAGTEFAGRHAEVVFTGGPTP-AAVRRNIAHMRERARAHGRDP 272
Cdd:pfam00296 141 ---EPVDFEGEFFTLDGAFLLPRPVQGIPVWVAAS-SPAMLELAARHADGLLLWGFAPpAAAAELIERVRAGAAEAGRDP 216
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  273 AGIKFIVQAAVIVGRNDLEVQAKLEDYRRLQSLDGALAHMQsGVDLAAFPAHtplaELPGGGPWAALLASDPQATVgqlv 352
Cdd:pfam00296 217 ADIRVGASLTVIVADTEEEARAEARALIAGLPFYRMDSEGA-GRLAEAREIG----EEYDAGDWAGAADAVPDELV---- 287
                         330       340
                  ....*....|....*....|....*
gi 759600645  353 krlggfdeGRFFVAGTPKVVADEIE 377
Cdd:pfam00296 288 --------RAFALVGTPEQVAERLA 304
Alkanesulfonate_monoxygenase cd01094
Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the ...
16-298 3.25e-39

Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin mononucleotide (FMNH2), which is provided by the NADPH-dependent FMN oxidoreductase (SsuE).


Pssm-ID: 238527 [Multi-domain]  Cd Length: 244  Bit Score: 142.03  E-value: 3.25e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  16 SHIVHGLWAHPENQRHRFNDIDYWTELAQLLEHGTFDGVFLAdvvgvydrFRGGPEtalreavqvpsnDPLLVIPAMAAV 95
Cdd:cd01094    7 IPNVSGGWSLSTPPRGRPWDFEYNRQIAQAAEELGFDGALSP--------TGSSGP------------DGWTVAAALAAA 66
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  96 TRNLGFGATFSTTYEPPFAFARRMSTLDHLTRGRVGWNIVTSYLPNAARNFGLDDEvpHDRRYEIADEYLDVLYKLWEGs 175
Cdd:cd01094   67 TERLKFLVAIRPGLIAPTVAARQAATLDHISGGRLGLNVVTGGDPAELRMDGDFLD--HDERYARADEFLEVLRRLWTS- 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645 176 wdDDAViadrqrriytdpakvryiDHVGEHFRVAGPHLCQPSRQRTPVLFQATG-SPAGTEFAGRHAEVVFTGGPTPAAV 254
Cdd:cd01094  144 --DEPF------------------DFEGKFYRFKNAFLRPKPPQQPHPPIYFGGsSEAAIEFAARHADVYFTWGEPPAQV 203
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 759600645 255 RRNIAHMRERARAHGRDpagIKFIVQAAVIVGRNDLEVQAKLED 298
Cdd:cd01094  204 AEAIARVRAAAAAAGRD---VRFGIRLHVIVRDTEEEAWAYADR 244
PRK00719 PRK00719
alkanesulfonate monooxygenase; Provisional
84-285 1.18e-20

alkanesulfonate monooxygenase; Provisional


Pssm-ID: 234821 [Multi-domain]  Cd Length: 378  Bit Score: 93.09  E-value: 1.18e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  84 DPLLVIPAMAAVTRNLGFGATFSTTYEPPFAFARRMSTLDHLTRGRVGWNIVTSYLP--NAARNFGLDdevpHDRRYEIA 161
Cdd:PRK00719  55 DAWLVAASLIPVTQRLKFLVALRPGLMSPTVAARMAATLDRLSNGRLLINLVTGGDPaeLAGDGLFLD----HDERYEAS 130
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645 162 DEYLDVLYKLWEGSwdddaviadrqrriytdpakvrYIDHVGEHFRVAGPHLCQPSRQRT-PVLFQATGSPAGTEFAGRH 240
Cdd:PRK00719 131 AEFLRIWRRLLEGE----------------------TVDFEGKHIQVKGAKLLFPPVQQPyPPLYFGGSSDAAQELAAEQ 188
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 759600645 241 AEVVFTGGPTPAAVRRNIAHMRERARAHGRDpagIKFIVQAAVIV 285
Cdd:PRK00719 189 VDLYLTWGEPPAQVKEKIEQVRAKAAAHGRK---VRFGIRLHVIV 230
F420_Rv2161c TIGR03619
probable F420-dependent oxidoreductase, Rv2161c family; Coenzyme F420 has a limited ...
40-302 8.82e-19

probable F420-dependent oxidoreductase, Rv2161c family; Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a domain found in a distinctive subset of bacterial luciferase homologs, found only in F420-biosynthesizing members of the Actinobacteria. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 274680 [Multi-domain]  Cd Length: 246  Bit Score: 85.39  E-value: 8.82e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645   40 TELAQLLEHGTFDGVFLAD-VVGVYDRFRGGPETALREAVQvPSNDPLLVIPAMAAVTRNLGFGaTFSTT--YEPPFAFA 116
Cdd:TIGR03619   1 AELARAAEELGFDSLLAYEhVAIPARRETPWPDSGGGDAPD-RTLDPFVALAFAAAVTSRLRLG-TGVLVlpQRDPLLLA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  117 RRMSTLDHLTRGRVGWNIVTSYLPNAARNFGlddeVPHDRRYEIADEYLDVLYKLWEGswdddaviadrqrriytDPAkv 196
Cdd:TIGR03619  79 KQAATLDLLSGGRLRLGVGVGWLREEFRALG----VDFDERGRLLDEAIEALRALWTQ-----------------DPV-- 135
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 759600645  197 ryiDHVGEHFRVAGPHLCQPSRQRTPVLFQATGSPAGTEFAGRHAEVVFTGGPTPAAVRRNIAHMRERARAHGRDPAGIK 276
Cdd:TIGR03619 136 ---SFHGEFVDFDPAVVRPKPVQRPPPIWIGGNSEAALRRAARLGDGWMPFGPPVDRLAAAVARLRDLAAAAGRDPDAVE 212
                         250       260
                  ....*....|....*....|....*.
gi 759600645  277 FIVQAAVIVGRNDlEVQAKLEDYRRL 302
Cdd:TIGR03619 213 VVLVRTDPDGDAD-ADAEDLAAYADL 237
Flavin_utilizing_monoxygenases cd00347
Flavin-utilizing monoxygenases
224-270 3.62e-05

Flavin-utilizing monoxygenases


Pssm-ID: 238209 [Multi-domain]  Cd Length: 90  Bit Score: 42.35  E-value: 3.62e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 759600645 224 LFQATGSPAGTEFAGRHAEVVFTGG-PTPAAVRRNIAHMRERARAHGR 270
Cdd:cd00347   43 IWFGGSSPPVAEQAGESGDGLLFAArEPPEEVAEALARYREAAAAAGR 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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