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Conserved domains on  [gi|760171044|ref|WP_043851730|]
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MULTISPECIES: autotransporter [Aeromonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LptD super family cl34269
LPS assembly outer membrane protein LptD (organic solvent tolerance protein OstA) [Cell wall ...
 145-211 1.82e-03

LPS assembly outer membrane protein LptD (organic solvent tolerance protein OstA) [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG1452:

Pssm-ID: 441061 [Multi-domain]  Cd Length: 702  Bit Score: 38.81  E-value: 1.82e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 760171044 145 GEVGLRYDIGNVELSTAYRYA------NMTGDMHDFKVGGAYKLNQNWALTADYTYrkwDVQQGSI--SSLGVKY 211
Cdd:COG1452  589 GNAGLRYRPDRRNLNLGYRYLrddpdyGYSDDIEQLDLSGSWPLTDNWSVVGRYRY---DLTDNRLveTLLGLEY 660
 
Name Accession Description Interval E-value
LptD COG1452
LPS assembly outer membrane protein LptD (organic solvent tolerance protein OstA) [Cell wall ...
 145-211 1.82e-03

LPS assembly outer membrane protein LptD (organic solvent tolerance protein OstA) [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441061 [Multi-domain]  Cd Length: 702  Bit Score: 38.81  E-value: 1.82e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 760171044 145 GEVGLRYDIGNVELSTAYRYA------NMTGDMHDFKVGGAYKLNQNWALTADYTYrkwDVQQGSI--SSLGVKY 211
Cdd:COG1452  589 GNAGLRYRPDRRNLNLGYRYLrddpdyGYSDDIEQLDLSGSWPLTDNWSVVGRYRY---DLTDNRLveTLLGLEY 660
 
Name Accession Description Interval E-value
LptD COG1452
LPS assembly outer membrane protein LptD (organic solvent tolerance protein OstA) [Cell wall ...
 145-211 1.82e-03

LPS assembly outer membrane protein LptD (organic solvent tolerance protein OstA) [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441061 [Multi-domain]  Cd Length: 702  Bit Score: 38.81  E-value: 1.82e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 760171044 145 GEVGLRYDIGNVELSTAYRYA------NMTGDMHDFKVGGAYKLNQNWALTADYTYrkwDVQQGSI--SSLGVKY 211
Cdd:COG1452  589 GNAGLRYRPDRRNLNLGYRYLrddpdyGYSDDIEQLDLSGSWPLTDNWSVVGRYRY---DLTDNRLveTLLGLEY 660
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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