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Conserved domains on  [gi|762786863|ref|WP_043883777|]
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hypothetical protein [Caldanaerobacter subterraneus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RocR super family cl34674
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ...
 2-39 1.60e-03

RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];


The actual alignment was detected with superfamily member COG3829:

Pssm-ID: 443041 [Multi-domain]  Cd Length: 448  Bit Score: 35.13  E-value: 1.60e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 762786863   2 NVNKVALKELLiKEFNGNYNKMAKALNVSPAQLYRILE 39
Cdd:COG3829  407 EVEKELIEEAL-EKTGGNKSKAAKALGISRSTLYRKLK 443
 
Name Accession Description Interval E-value
RocR COG3829
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ...
 2-39 1.60e-03

RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];


Pssm-ID: 443041 [Multi-domain]  Cd Length: 448  Bit Score: 35.13  E-value: 1.60e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 762786863   2 NVNKVALKELLiKEFNGNYNKMAKALNVSPAQLYRILE 39
Cdd:COG3829  407 EVEKELIEEAL-EKTGGNKSKAAKALGISRSTLYRKLK 443
 
Name Accession Description Interval E-value
RocR COG3829
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ...
 2-39 1.60e-03

RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];


Pssm-ID: 443041 [Multi-domain]  Cd Length: 448  Bit Score: 35.13  E-value: 1.60e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 762786863   2 NVNKVALKELLiKEFNGNYNKMAKALNVSPAQLYRILE 39
Cdd:COG3829  407 EVEKELIEEAL-EKTGGNKSKAAKALGISRSTLYRKLK 443
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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